Query psy4335
Match_columns 152
No_of_seqs 120 out of 1081
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:58:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_C Guanine nucleotide-bind 100.0 4.6E-65 1.6E-69 419.9 15.0 147 4-151 42-192 (254)
2 3j20_F 30S ribosomal protein S 100.0 1.8E-64 6.2E-69 412.9 11.9 147 4-151 23-179 (236)
3 2xzm_E Ribosomal protein S5 co 100.0 7.3E-62 2.5E-66 407.4 13.5 147 4-151 34-193 (296)
4 3iz6_E 40S ribosomal protein S 100.0 2.5E-64 8.6E-69 418.9 -24.6 147 4-151 51-201 (274)
5 3bbn_E Ribosomal protein S5; s 100.0 6.3E-49 2.2E-53 330.7 10.1 136 3-151 122-261 (308)
6 3r8n_E 30S ribosomal protein S 100.0 1.8E-43 6E-48 272.8 9.0 106 38-151 1-110 (150)
7 1pkp_A Ribosomal protein S5; 2 100.0 7.8E-43 2.7E-47 269.1 9.9 107 37-151 9-119 (150)
8 2vqe_E 30S ribosomal protein S 100.0 3.1E-42 1.1E-46 268.7 12.3 107 37-151 4-114 (162)
9 3i1m_E 30S ribosomal protein S 100.0 8.1E-43 2.8E-47 273.1 8.7 107 37-151 9-119 (167)
10 1t4o_A Ribonuclease III; RNT1P 58.9 8.3 0.00028 27.9 3.3 40 57-99 36-75 (117)
11 3adl_A RISC-loading complex su 55.9 23 0.00079 23.7 5.0 38 57-99 45-82 (88)
12 3my9_A Muconate cycloisomerase 50.1 4.3 0.00015 33.8 0.6 53 6-81 2-56 (377)
13 1c8c_A DNA-binding protein 7A; 49.6 11 0.00037 24.1 2.3 44 40-87 11-54 (64)
14 2dix_A Interferon-inducible do 48.4 48 0.0016 21.7 5.7 38 57-99 37-74 (84)
15 1uhz_A Staufen (RNA binding pr 46.2 46 0.0016 22.2 5.3 37 58-99 37-73 (89)
16 1t4n_A Ribonuclease III; DSRBD 44.0 38 0.0013 23.3 4.7 40 57-99 34-73 (94)
17 2khx_A Ribonuclease 3; drosha, 42.9 39 0.0013 22.4 4.5 41 59-103 38-78 (85)
18 3llh_A RISC-loading complex su 42.8 49 0.0017 22.0 5.0 38 57-99 43-80 (90)
19 2chr_A Chloromuconate cycloiso 42.8 7 0.00024 32.1 0.8 48 10-81 1-49 (370)
20 3i6e_A Muconate cycloisomerase 41.7 10 0.00035 31.7 1.7 50 9-81 7-58 (385)
21 3i4k_A Muconate lactonizing en 40.5 9.1 0.00031 31.9 1.2 50 8-80 4-54 (383)
22 3r0u_A Enzyme of enolase super 40.1 9 0.00031 32.1 1.1 50 9-81 2-52 (379)
23 3mwc_A Mandelate racemase/muco 39.0 16 0.00056 30.6 2.6 50 8-81 5-55 (400)
24 4hpn_A Putative uncharacterize 38.8 7.7 0.00026 32.0 0.5 27 56-82 24-51 (378)
25 4h83_A Mandelate racemase/muco 37.7 14 0.00047 30.9 1.9 50 8-80 18-68 (388)
26 2k75_A Uncharacterized protein 37.3 72 0.0025 21.7 5.3 38 38-77 17-54 (106)
27 3ro6_B Putative chloromuconate 36.1 12 0.0004 30.8 1.2 49 10-81 1-50 (356)
28 3ik4_A Mandelate racemase/muco 35.5 18 0.00063 29.9 2.3 51 8-81 3-54 (365)
29 1wvl_A DNA-binding proteins 7A 35.3 43 0.0015 22.1 3.6 42 40-86 11-52 (80)
30 3fcp_A L-Ala-D/L-Glu epimerase 34.8 16 0.00056 30.3 1.9 49 9-80 4-53 (381)
31 3fv9_G Mandelate racemase/muco 33.8 17 0.00058 30.3 1.8 51 9-81 2-54 (386)
32 3dgb_A Muconate cycloisomerase 33.4 13 0.00045 30.9 1.1 19 62-80 36-54 (382)
33 1di2_A XLRBPA, double stranded 33.3 86 0.0029 19.3 5.3 36 57-97 30-65 (69)
34 2cc6_A VNG1446H, dodecin; flav 31.4 34 0.0011 22.4 2.6 21 82-102 14-34 (68)
35 1chr_A Chloromuconate cycloiso 31.4 11 0.00039 31.1 0.3 47 10-80 1-48 (370)
36 2nug_A Ribonuclease III, RNAse 31.3 75 0.0026 24.1 5.1 37 58-99 181-217 (221)
37 3adg_A F21M12.9 protein; HYL1, 31.1 72 0.0025 20.0 4.2 37 57-97 32-69 (73)
38 2ux9_A Dodecin; flavoprotein; 30.9 35 0.0012 22.3 2.6 22 82-103 16-37 (69)
39 4e8g_A Enolase, mandelate race 30.6 21 0.00072 29.9 1.9 51 8-81 21-73 (391)
40 2yiz_A Dodecin; flavoprotein, 30.2 40 0.0014 22.1 2.8 22 82-103 16-37 (69)
41 1x48_A Interferon-induced, dou 30.0 73 0.0025 21.1 4.2 36 60-99 37-72 (88)
42 2vxa_A Dodecin; flavoprotein, 30.0 37 0.0013 22.4 2.6 22 82-103 17-38 (72)
43 3s5s_A Mandelate racemase/muco 29.8 16 0.00055 30.6 1.0 51 8-81 3-54 (389)
44 2cpn_A TAR RNA-binding protein 29.2 1.3E+02 0.0043 19.9 5.5 38 57-99 46-83 (89)
45 4h2h_A Mandelate racemase/muco 28.8 27 0.00091 28.9 2.2 56 3-80 3-59 (376)
46 2b7v_A Double-stranded RNA-spe 28.6 99 0.0034 19.2 4.5 38 57-99 29-66 (71)
47 2xiw_A DNA-binding protein 7D; 28.4 68 0.0023 21.2 3.7 52 39-95 21-72 (79)
48 3tj4_A Mandelate racemase; eno 28.1 27 0.00091 28.9 2.1 51 10-82 1-52 (372)
49 3onr_A Protein transport prote 28.0 33 0.0011 22.7 2.1 19 82-100 16-34 (72)
50 1x47_A DGCR8 protein; structur 27.9 97 0.0033 20.9 4.6 38 59-100 46-83 (98)
51 3dg3_A Muconate cycloisomerase 27.9 23 0.00077 29.2 1.6 47 10-79 1-48 (367)
52 3eez_A Putative mandelate race 27.6 19 0.00063 30.0 1.0 50 9-81 2-54 (378)
53 3ozy_A Putative mandelate race 27.4 20 0.00067 29.9 1.1 50 9-81 2-54 (389)
54 3q45_A Mandelate racemase/muco 26.1 17 0.00059 30.0 0.5 20 62-81 31-50 (368)
55 3jva_A Dipeptide epimerase; en 25.8 32 0.0011 28.1 2.1 19 62-80 31-49 (354)
56 3sjn_A Mandelate racemase/muco 25.8 20 0.00067 29.7 0.8 16 63-78 29-44 (374)
57 3u9i_A Mandelate racemase/muco 25.3 31 0.0011 28.9 2.0 20 62-81 57-76 (393)
58 2pif_A UPF0317 protein pspto_5 25.0 65 0.0022 26.5 3.8 56 70-134 114-177 (276)
59 2b7t_A Double-stranded RNA-spe 24.5 1.2E+02 0.0039 19.0 4.3 38 57-99 32-69 (73)
60 3p3c_A UDP-3-O-[3-hydroxymyris 24.5 35 0.0012 28.0 2.1 13 126-138 25-37 (274)
61 1h2i_A RAD52, DNA repair prote 23.5 2.7E+02 0.0092 21.8 7.9 59 37-95 82-146 (209)
62 3ddm_A Putative mandelate race 23.4 25 0.00085 29.4 1.0 49 8-79 8-57 (392)
63 3qld_A Mandelate racemase/muco 22.9 46 0.0016 27.7 2.6 19 62-80 31-49 (388)
64 3uhm_A UDP-3-O-[3-hydroxymyris 21.5 41 0.0014 27.9 1.9 14 126-139 26-39 (299)
65 3p3g_A UDP-3-O-[3-hydroxymyris 21.5 41 0.0014 27.9 1.9 14 126-139 26-39 (300)
66 2nql_A AGR_PAT_674P, isomerase 21.4 44 0.0015 27.6 2.1 20 62-81 52-71 (388)
67 1ekz_A DSRBDIII, maternal effe 20.5 20 0.00069 22.9 -0.1 32 59-95 38-69 (76)
68 4dye_A Isomerase; enolase fami 20.5 43 0.0015 28.1 1.9 20 62-81 54-73 (398)
No 1
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1, RACK1); translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B 3o2z_B 3u5g_C 3jyv_E* 1s1h_E
Probab=100.00 E-value=4.6e-65 Score=419.87 Aligned_cols=147 Identities=54% Similarity=0.914 Sum_probs=145.8
Q ss_pred ceeeccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchh
Q psy4335 4 CLAFRDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKE 83 (152)
Q Consensus 4 ~~~vk~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~e 83 (152)
|||||||||+||||||+|||||+|+||||||| ++|+|+||+|+||||||++||++||+|||+|||+||+||+|+|||+|
T Consensus 42 G~lVk~~kiksleei~~~slpikE~eiiD~~l-~~Lke~Vl~I~rVqK~tkgGrr~rF~AlVVVGD~nG~VGlG~gkakE 120 (254)
T 3u5c_C 42 GRLVKAGKITTIEEIFLHSLPVKEFQIIDTLL-PGLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKE 120 (254)
T ss_dssp HHHHHTTCCCCHHHHHHTTCCCCCHHHHHHHC-CCCBCCEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESS
T ss_pred cchhhcCccccHHHHHHcCCCccchHHHHHHH-HhhhhhEEEEeeeEEEecCCcEEEEEEEEEecCCCCceeecccccch
Confidence 89999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcceeeeecccCCcCCCCceeeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 84 VATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 84 v~~Ai~kA~~~Ak~nli~v~rgy~~~~~~~~hTI~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
|++||++|+.+|++||+||+|+||+|+++++|||||+++|+ | |+|+|||+||||+|++++++||+|||
T Consensus 121 V~~AIrkAi~~Ak~nlipV~rgyWg~~~g~~hTIp~~V~Gk~Gs~~V~L~PAp~GtGIiag~~~r~vLelAG 192 (254)
T 3u5c_C 121 VAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAG 192 (254)
T ss_dssp HHHHHHHHHHHHHHTCEECCEECSSSCCSSCCEESSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCeEEeccccccccCCCCcceeeEEEeeecceEEEEecCCCCcCeecCcHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999 6 99999999999999999999999998
No 2
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-64 Score=412.88 Aligned_cols=147 Identities=33% Similarity=0.587 Sum_probs=145.4
Q ss_pred ceeeccCCccCHHHHhhcCCCCCchhhhhcccCCCcc----ceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeee
Q psy4335 4 CLAFRDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLK----DEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVK 79 (152)
Q Consensus 4 ~~~vk~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~----~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~g 79 (152)
|||||||||+||||||+|||||+|+||||||| ++|+ |+||+|+||||||++||++||+|||+|||+||+||+|+|
T Consensus 23 G~lVk~~ki~sleei~~~~lpike~eiid~~l-~~Lk~~~~e~Vl~I~rV~K~tkgGrr~rF~AlVvVGD~nG~VGlG~g 101 (236)
T 3j20_F 23 GMMVKEGQITDIHEIFRRGYQIKEPEIIDVLL-PEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIG 101 (236)
T ss_dssp HHHHHTTCSCCHHHHHHHTCCCCCSHHHHHHC-CSSSSCCEEEEEEECCCEEEETTEEEECEEEEEEEEETTTEEEEEEE
T ss_pred cceeecCccccHHHHHhcCCCcccHHHHHHHH-HhhcccCCcEEEEEeeeEEeecCCcEEEEEEEEEEECCCCcCccccc
Confidence 89999999999999999999999999999999 8999 999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcceeeeec--ccCCcCCCCceeeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 80 CSKEVATAIRGAIILAKLSVVPVRRG--YWGNKIGKPHTVPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 80 ks~ev~~Ai~kA~~~Ak~nli~v~rg--y~~~~~~~~hTI~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
||+|+++||++|+.+|++||++|+|+ ||+|+++++|||||+++|+ | |+|+|||+||||+|+|+++++|+|||
T Consensus 102 KakEV~~AIrkAi~~Ak~nli~V~r~~g~W~~~~g~~hTIp~~V~Gk~Gs~~V~L~PAp~GtGIiag~~~r~vLelAG 179 (236)
T 3j20_F 102 HGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAG 179 (236)
T ss_dssp EESSHHHHHHHHHHHHHHSEEECCCBSSCSSSCCSSCCBCSSCEEEEETTEEEEEECCCSSCCCBSCHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHhCeEEEecccccccccCCCCCceeeEEEEEECCEEEEEEcCCCcCCcccCcHHHHHHHhCC
Confidence 99999999999999999999999998 9999999999999999999 6 99999999999999999999999998
No 3
>2xzm_E Ribosomal protein S5 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_E
Probab=100.00 E-value=7.3e-62 Score=407.43 Aligned_cols=147 Identities=54% Similarity=0.848 Sum_probs=144.9
Q ss_pred ceeeccCCccCHHHHhhcCCCCCchhhhhcccCCC---------ccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceE
Q psy4335 4 CLAFRDGKIQSLEQIYLFSLPIKEFEIIDFFIGSS---------LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHI 74 (152)
Q Consensus 4 ~~~vk~~~i~~~~~~~~~~l~i~e~eiid~~~~~~---------l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~v 74 (152)
|||||||||+||||||+|||||+|+||||||| ++ |+|+||+|+||||||++||++||+|||+|||+||+|
T Consensus 34 GrlVk~gkI~sleei~~~slpIkE~eIiD~ll-~~~~~~~~~~~L~ekVv~I~rVqKvTkgGRr~rF~AlVVVGD~nG~V 112 (296)
T 2xzm_E 34 GRLVKYGKISSLDEIFKYSIPIKEPEIIDHFY-PKNKDVQAEHKLMEEVLQITPVQKQTQAGQRTRFKGFVVVGDSNGHI 112 (296)
T ss_dssp HHHHHTTCSCCHHHHHHTTCCCCCSHHHHHHS-CTTCCSCCTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEE
T ss_pred cccccCCccCCHHHHHhcCCCcCchhhhHHHh-ccCcccchhhhheeEEEEEEeEEEEecCCcEEEEEEEEEEeCCCccC
Confidence 89999999999999999999999999999999 55 999999999999999999999999999999999999
Q ss_pred EeeeecchhHHHHHHHHHHHHhhcceeeeecccCCcCCCCceeeeeeeee-e---EEEeecCCCcceeeChhhHHhhccc
Q psy4335 75 GLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTS 150 (152)
Q Consensus 75 G~G~gks~ev~~Ai~kA~~~Ak~nli~v~rgy~~~~~~~~hTI~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lA 150 (152)
|||+|||+||++||+||+.+|++||++|+|+||||+++++|||||+++|+ | |+|+|||+||||+|++++++||+||
T Consensus 113 GlG~GKAkEV~~AIrKAi~~Ak~nli~V~rg~wen~~g~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiAg~~~r~VLelA 192 (296)
T 2xzm_E 113 GLGWKVAKEVQGAIKGAITHAKLNMVPVRKGYWGNKIANAHTIPQKITGKSGSVRIRLVPAPRGTGIVAAPIPKKVLQFA 192 (296)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTEEECCCBCSSSCCSSCCBCSSCEEEEETTEEEEEECCCSSCCCBSCHHHHHHHHTT
T ss_pred ccceeechHHHHHHHHHHHHHHhCcEEEecccccccCCCCCeeeEEEEEEECcEEEEEEECCCCcceecCcHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 6 9999999999999999999999999
Q ss_pred C
Q psy4335 151 K 151 (152)
Q Consensus 151 g 151 (152)
|
T Consensus 193 G 193 (296)
T 2xzm_E 193 G 193 (296)
T ss_dssp T
T ss_pred C
Confidence 8
No 4
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e
Probab=100.00 E-value=2.5e-64 Score=418.91 Aligned_cols=147 Identities=62% Similarity=1.015 Sum_probs=145.6
Q ss_pred ceeeccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchh
Q psy4335 4 CLAFRDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKE 83 (152)
Q Consensus 4 ~~~vk~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~e 83 (152)
||||||||||||||||+|||||+|+||||||| ++|+|+||+|+||||||++||++||+|||+|||+||+||||++||+|
T Consensus 51 G~lVk~~kiksleei~~~slpIkE~eIiD~~l-~~Lke~Vl~I~rVqK~tkgGrr~rF~AlVVVGD~nG~VGlG~gKakE 129 (274)
T 3iz6_E 51 GRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKE 129 (274)
T ss_dssp TCCCSSCTTHHHHHHHTTHHHHHHHTCCSSSS-HHHHHHHHCCSHHHHHHTTTCSSSCSSCCSHHHHCCCCEEEEEEECC
T ss_pred cceeccCccccHHHHHHcCCCccchHHHHHHH-HhhhhcEEEEeeeEeEecCCcEEEEEEEEEecCCCCceeccccccch
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcceeeeecccCCcCCCCceeeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 84 VATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 84 v~~Ai~kA~~~Ak~nli~v~rgy~~~~~~~~hTI~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
|++||++|+.+|++||+||+|+||+|+++++|||||+++|+ + |+|+|||+||||+|++++++||+|||
T Consensus 130 V~~AIrkAi~~AK~nlipV~rgyWg~~~g~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiag~~~r~vLelAG 201 (274)
T 3iz6_E 130 VATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAG 201 (274)
T ss_dssp EEECSSCEEECEEEEEEECSSSBCCCCEEESSHHHHHHHHHHHHHSSCBCCCBCSSSCBSSCEECCCSSCEE
T ss_pred HHHHHHHHHHHHHhCcEEeccccccccCCCCcccceEEEEEEcCEEEEEeeCCCCcCeecCcHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999 6 99999999999999999999999998
No 5
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=6.3e-49 Score=330.65 Aligned_cols=136 Identities=24% Similarity=0.303 Sum_probs=103.8
Q ss_pred cceeeccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecch
Q psy4335 3 QCLAFRDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSK 82 (152)
Q Consensus 3 ~~~~vk~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ 82 (152)
-||+|+|++||+. |+|.|||||+|+||+|+ |+|+||+|+||||||++||++||+|||+|||+||+||+|+|||+
T Consensus 122 lGrlVk~~kik~~-~~~~fsl~ike~ei~d~-----f~ekVv~I~RV~KvTkgGRr~rF~AlVVVGDgnG~VGlG~GKAk 195 (308)
T 3bbn_E 122 LGNDVYAMDSKIK-KATGFGSKSKKEKIRDG-----FEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAK 195 (308)
T ss_dssp ------------------------------C-----CEEEEEEEECCEEEETTEEEECCEEEEEEECSSSEEEEEEEECS
T ss_pred cCccCCCccccch-hhhcccccccccccccc-----ceeeEEEEeeeEEEecCCcEEEEEEEEEEeCCCceEeeeeeecc
Confidence 4999999999976 89999999999999994 56999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcceeeeecccCCcCCCCceeeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 83 EVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 83 ev~~Ai~kA~~~Ak~nli~v~rgy~~~~~~~~hTI~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
||++||+||+.+|++||++|+|+ ++|||||+++|| | |+|+|||+||||+|++++|+||+|||
T Consensus 196 EV~~AIrKAi~~Akknli~V~r~-------~~hTIph~V~Gk~Gs~~V~L~PAP~GTGIiAg~~vr~VLelAG 261 (308)
T 3bbn_E 196 EVVSAVQKAAVDARRNIITVPMT-------KYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAG 261 (308)
T ss_dssp SHHHHHHHHHHTTTTSCEECCCC-------SSSBCSSCEEEEETTEEEEEEECCTTCCEECCTTTHHHHTTTT
T ss_pred hHHHHHHHHHHHHHhCeEEEecC-------CCcccceEEEEEEeeEEEEEEECCCCCceecCcHHHHHHHhcC
Confidence 99999999999999999999995 679999999999 6 99999999999999999999999998
No 6
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_E 3fih_E* 3iy8_E 3j18_E* 2wwl_E 3oar_E 3oaq_E 3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E 3r8o_E 4a2i_E 4gd1_E 4gd2_E 2qal_E* 1p6g_E 1p87_E ...
Probab=100.00 E-value=1.8e-43 Score=272.77 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=103.4
Q ss_pred CccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcceeeeecccCCcCCCCcee
Q psy4335 38 SLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 117 (152)
Q Consensus 38 ~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli~v~rgy~~~~~~~~hTI 117 (152)
+|+|+||+|+||||||++||++||+|||++||+||+||||+|||+|+++||++|+++|++||+||+| ++|||
T Consensus 1 ~l~e~vv~i~rV~K~tk~Gr~~~F~alVvvGd~nG~vG~G~gka~ev~~Ai~kA~~~Ak~nli~V~~--------~~~Ti 72 (150)
T 3r8n_E 1 ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVAL--------NNGTL 72 (150)
T ss_dssp CCCEEEEEEEECCCCCSSSCCCCEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSCCCCCC--------SSSSC
T ss_pred CceEEEEEEeeeEEEecCCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHHHHHhCeEEEec--------CCCee
Confidence 5899999999999999999999999999999999999999999999999999999999999999999 36999
Q ss_pred eeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 118 PCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 118 ~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
||+++|+ | |+|+|||+||||+|+|+++++|+|||
T Consensus 73 p~~v~gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aG 110 (150)
T 3r8n_E 73 QHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAG 110 (150)
T ss_dssp SSCEEEEETTEEEEEECCCCSSCCBSCTTTHHHHHHTC
T ss_pred eeEEeeEEccEEEEEEcCCCcCceecCcHHHHHHHhCC
Confidence 9999999 6 99999999999999999999999998
No 7
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Probab=100.00 E-value=7.8e-43 Score=269.14 Aligned_cols=107 Identities=32% Similarity=0.460 Sum_probs=104.1
Q ss_pred CCccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcceeeeecccCCcCCCCce
Q psy4335 37 SSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 116 (152)
Q Consensus 37 ~~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli~v~rgy~~~~~~~~hT 116 (152)
++|+|++|+|+||||||++||++||+|||+|||+||++|||+|||+|+++||+||+.+|++||++|+|+ + ||
T Consensus 9 ~~l~e~vv~i~rV~K~tk~Gr~~~F~alVvVGd~nG~vG~G~gka~ev~~Ai~kA~~~Ak~nl~~V~~~-------~-~T 80 (150)
T 1pkp_A 9 LELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIV-------G-TT 80 (150)
T ss_dssp SCCEEEEEEEECSSSBCSSCCSSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSCEECCCB-------T-TB
T ss_pred CCceEEEEEEEeEEEEeCCCcEEEEEEEEEEeCCCCeEeeeEEecchHHHHHHHHHHHHHHCCeEEccC-------C-ce
Confidence 479999999999999999999999999999999999999999999999999999999999999999994 3 99
Q ss_pred eeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 117 VPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 117 I~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
|||+++|+ | |+|+|||+||||+|+++++++|+|||
T Consensus 81 ip~~v~gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aG 119 (150)
T 1pkp_A 81 IPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAG 119 (150)
T ss_dssp CSSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHHT
T ss_pred eeEEEEEEECCEEEEEEECCCCCccccCcHHHHHHHhcC
Confidence 99999999 6 99999999999999999999999998
No 8
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Probab=100.00 E-value=3.1e-42 Score=268.67 Aligned_cols=107 Identities=23% Similarity=0.353 Sum_probs=103.5
Q ss_pred CCccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcceeeeecccCCcCCCCce
Q psy4335 37 SSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 116 (152)
Q Consensus 37 ~~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli~v~rgy~~~~~~~~hT 116 (152)
.+|+|++|+|+||||||++||++||+|||+|||+||++|||+|||+|+++||+||+++|++||++|+|+ +||
T Consensus 4 ~~l~e~vv~I~rV~K~tkgGr~~~F~alVvvGd~nG~vG~G~gKa~ev~~AIrkA~~~Ak~nli~V~~~--------~~T 75 (162)
T 2vqe_E 4 TDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQ--------NGT 75 (162)
T ss_dssp -CCEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSEEECCCS--------TTS
T ss_pred cCceeEEEEEEeEEEEeCCCcEEEEEEEEEEeCCCCeEecceEecccHHHHHHHHHHHHHhCcEEEecC--------CCc
Confidence 479999999999999999999999999999999999999999999999999999999999999999994 389
Q ss_pred eeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 117 VPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 117 I~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
|||+++|+ | |+|+|||+||||+|+++++++|+|||
T Consensus 76 Ip~~v~gk~gs~~V~l~Pap~GtGiiag~~~r~vl~~aG 114 (162)
T 2vqe_E 76 IPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAG 114 (162)
T ss_dssp CSSCEEEEETTEEEEEEECCTTSCEESCHHHHHHHHTTT
T ss_pred ccEEEEEEeCcEEEEEEECCCCcceecCcHHHHHHHhcC
Confidence 99999999 6 99999999999999999999999998
No 9
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E 3or9_E 3ora_E 3sfs_E* 3uoq_E* 4gaq_E* 4gas_E*
Probab=100.00 E-value=8.1e-43 Score=273.11 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=103.6
Q ss_pred CCccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcceeeeecccCCcCCCCce
Q psy4335 37 SSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 116 (152)
Q Consensus 37 ~~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli~v~rgy~~~~~~~~hT 116 (152)
.+|+|+||+|+||||||++||++||+|||+|||+||+||||+|||+|+++||++|+++|++||+||+| ++||
T Consensus 9 ~~l~e~vv~I~rV~K~tk~Gr~~~F~AlVvvGd~nG~VG~G~gka~Ev~~AI~kAi~~Ak~nli~V~~--------~~~T 80 (167)
T 3i1m_E 9 GELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVAL--------NNGT 80 (167)
T ss_dssp -CCCEEEEEEEEEECCBTTBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSEECCCC--------BTTB
T ss_pred CceeEEEEEEEeeEEEEcCCcEEEEEEEEEEECCCCcEeecccccccHHHHHHHHHHHHHhCeEEEec--------CCCe
Confidence 36999999999999999999999999999999999999999999999999999999999999999999 3699
Q ss_pred eeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 117 VPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 117 I~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
|||+++|+ | |+|+|||+||||+|+|+++++|+|||
T Consensus 81 ip~~v~gk~gs~~V~l~Pap~GtGiia~~~~r~vl~~aG 119 (167)
T 3i1m_E 81 LQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAG 119 (167)
T ss_dssp CSSCEEEEETTEEEEEECCCCSSSCBCCSSSSSHHHHHT
T ss_pred eeeEeeeeeccEEEEEEcCCCccceecCcHHHHHHHhCC
Confidence 99999999 6 99999999999999999999999998
No 10
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=58.86 E-value=8.3 Score=27.90 Aligned_cols=40 Identities=20% Similarity=0.023 Sum_probs=26.5
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....|.+-|.++| ....|.|.|+|+- .|=+.|-..|..++
T Consensus 36 H~k~F~v~V~i~g-~~~~g~G~G~SKK--~AEQ~AA~~AL~~l 75 (117)
T 1t4o_A 36 VDPNSIVECRVGD-GTVLGTGVGRNIK--IAGIRAAENALRDK 75 (117)
T ss_dssp SCCCEEEEEECTT-CCEEEEEEESSHH--HHHHHHHHHHHHCH
T ss_pred CCCeEEEEEEECC-EEEEEEEEeCCHH--HHHHHHHHHHHHHH
Confidence 3456888888887 2268888888874 45556655555444
No 11
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=55.91 E-value=23 Score=23.71 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=26.1
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....|.+-|.+++ . .|.|.|+++ ..|-+.|-..|...|
T Consensus 45 H~~~F~~~v~v~g-~--~~~G~G~SK--K~Aeq~AA~~AL~~L 82 (88)
T 3adl_A 45 HRKEFTMTCRVER-F--IEIGSGTSK--KLAKRNAAAKMLLRV 82 (88)
T ss_dssp TSCEEEEEEEETT-E--EEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECC-E--EEEEeeCCH--HHHHHHHHHHHHHHH
Confidence 3456888888876 2 677777776 467777766666544
No 12
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}
Probab=50.08 E-value=4.3 Score=33.78 Aligned_cols=53 Identities=19% Similarity=0.418 Sum_probs=31.9
Q ss_pred eeccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EE-EEEEEecCCCceEEeeeecc
Q psy4335 6 AFRDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RF-KAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 6 ~vk~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf-~alVvvGn~nG~vG~G~gks 81 (152)
|-+|+||+++ ++|.+++|++++--.- .|..+ +- ..+|-+-+.+|.+|+|....
T Consensus 2 ~~~~~kI~~i-~~~~~~~Pl~~p~~~s----------------------~~~~~~~~~~~~V~v~td~G~~G~GE~~~ 56 (377)
T 3my9_A 2 LSWDSVVERI-RIFLVESPIKMARLQG----------------------VGNVKGSVKRVLLEVTSADGIVGWGEAAP 56 (377)
T ss_dssp -CCCCBEEEE-EEEEEEECEEC--------------------------------CCEEEEEEEEEETTSCEEEEEECC
T ss_pred CcccCEEEEE-EEEEEeccccCCeecc----------------------ceEEEeeeeEEEEEEEECCCCEEEEeccc
Confidence 4578999999 5888888876542111 01111 22 45666666689999998753
No 13
>1c8c_A DNA-binding protein 7A; protein-DNA interaction, protein stability, hyperthermophIle, achaeabacteria, X-RAY crystallography; 1.45A {Sulfolobus solfataricus} SCOP: b.34.13.1 PDB: 1bnz_A 1bbx_C* 1jic_A 1sso_A 1bf4_A* 2cvr_A 1b4o_A 1azp_A* 1azq_A* 1ca5_A 1ca6_A 1sap_A 1wd0_A 1wd1_A 1wtw_A 1wtx_A 1wtq_A 1wtp_A 1wtv_A 1wtr_A ...
Probab=49.64 E-value=11 Score=24.11 Aligned_cols=44 Identities=20% Similarity=0.398 Sum_probs=33.8
Q ss_pred cceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHH
Q psy4335 40 KDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATA 87 (152)
Q Consensus 40 ~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~A 87 (152)
+|+-+++..+.|+.+-|+..||.. -|+||.-|-|--.-++.+.-
T Consensus 11 eekevdiskikkvwrvgkmisfty----ddgngktgrgavsekdapke 54 (64)
T 1c8c_A 11 EEKQVDISKIKKVWRVGKMISFTY----DEGGGKTGRGAVSEKDAPKE 54 (64)
T ss_dssp SEEEEEGGGEEEEEEETTEEEEEE----ECGGGCEEEEEEESTTCCHH
T ss_pred cceeecHHHHHHHHhhcceEEEEE----ecCCCcccccccccccChHH
Confidence 456677788888888899999975 68899999887766664443
No 14
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=48.43 E-value=48 Score=21.70 Aligned_cols=38 Identities=26% Similarity=0.145 Sum_probs=25.7
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....|.+-|.+++ ..|.|.|+++. .|-+.|-..|...|
T Consensus 37 h~~~F~~~v~v~~---~~~~G~G~SKK--~Aeq~AA~~aL~~L 74 (84)
T 2dix_A 37 HVPTFTFRVTVGD---ITCTGEGTSKK--LAKHRAAEAAINIL 74 (84)
T ss_dssp SSCEEEEEEEETT---EEEEECSSCTT--HHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECC---EEEEeeeCCHH--HHHHHHHHHHHHHH
Confidence 3456888888865 78888888875 45556655555544
No 15
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=46.20 E-value=46 Score=22.19 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=24.6
Q ss_pred eEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 58 RTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 58 ~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
...|.+-|.+++ ..|.|.|+++ ..|-+.|-..|...|
T Consensus 37 ~~~F~~~v~v~g---~~~~G~G~SK--K~Aeq~AA~~AL~~L 73 (89)
T 1uhz_A 37 RREFVMQVKVGN---EVATGTGPNK--KIAKKNAAEAMLLQL 73 (89)
T ss_dssp TCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECC---EEEEEeeCCH--HHHHHHHHHHHHHHH
Confidence 456888888875 2677777776 456666666665544
No 16
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=44.04 E-value=38 Score=23.31 Aligned_cols=40 Identities=20% Similarity=0.023 Sum_probs=26.9
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
-...|.+-|.++| +...|.|.|+|+- .|=+.|-..|-.++
T Consensus 34 H~k~F~v~v~i~~-~~~~g~G~G~SKK--~AEQ~AA~~AL~~l 73 (94)
T 1t4n_A 34 VDPNSIVECRVGD-GTVLGTGVGRNIK--IAGIRAAENALRDK 73 (94)
T ss_dssp SCCSEEEEEECSS-SCEEEEEEESSHH--HHHHHHHHHHHHCH
T ss_pred CCCeEEEEEEECC-EEEEEEEEeCCHH--HHHHHHHHHHHHHH
Confidence 3456888888877 3378888888874 45566666665544
No 17
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=42.88 E-value=39 Score=22.35 Aligned_cols=41 Identities=22% Similarity=0.069 Sum_probs=28.1
Q ss_pred EEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcceeee
Q psy4335 59 TRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVR 103 (152)
Q Consensus 59 ~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli~v~ 103 (152)
..|.+-|.+++ -..|.|.|+|+ ..|-+.|-..|...|....
T Consensus 38 ~~F~v~V~v~g--~~~~~G~G~SK--K~AEq~AA~~AL~~L~~~~ 78 (85)
T 2khx_A 38 RTYTVAVYFKG--ERIGCGKGPSI--QQAEMGAAMDALEKYNFPQ 78 (85)
T ss_dssp CCEEEEEEETT--EECCCEEESSH--HHHHHHHHHHHHTTCCSSC
T ss_pred CcEEEEEEECC--EEEEEEeeCCH--HHHHHHHHHHHHHHHhHhh
Confidence 45788888876 34566777666 5777888788877665443
No 18
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=42.82 E-value=49 Score=21.96 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=24.5
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....|.+-|.+++ ..|.|.|+|+ ..|=+.|-..|-..|
T Consensus 43 H~~~F~~~v~v~g---~~~~G~G~SK--K~Aeq~AA~~aL~~L 80 (90)
T 3llh_A 43 HQPNFTFRVTVGD---TSCTGQGPSK--KAAKHKAAEVALKHL 80 (90)
T ss_dssp --CCEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEECC---EEEEEEeCCH--HHHHHHHHHHHHHHH
Confidence 3456888888864 4677777776 566667766665544
No 19
>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1
Probab=42.82 E-value=7 Score=32.12 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EEEEEEEecCCCceEEeeeecc
Q psy4335 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvGn~nG~vG~G~gks 81 (152)
|||+++| +|..++|++++- .|..|... +-..+|-+=+ +|.+|+|...+
T Consensus 1 MKI~~i~-~~~~~~Pl~~p~----------------------~~s~~~~~~~~~v~V~i~t-dG~~G~GE~~~ 49 (370)
T 2chr_A 1 MKIDAIE-AVIVDVPTKRPI----------------------QMSITTVHQQSYVIVRVYS-EGLVGVGEGGS 49 (370)
T ss_dssp CCCCEEE-EEEEEEEEEEEE----------------------ECSSCEEEEEEEEEEEEEB-TTBCCEEECCC
T ss_pred CEEEEEE-EEEEEcccCCce----------------------EccceEEEEEEEEEEEEEE-CCcEEEEEecC
Confidence 7888884 677777755331 01122222 2234444545 69999998643
No 20
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A
Probab=41.66 E-value=10 Score=31.67 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=28.0
Q ss_pred cCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCee-EE-EEEEEEecCCCceEEeeeecc
Q psy4335 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQR-TR-FKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 9 ~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~-~r-f~alVvvGn~nG~vG~G~gks 81 (152)
.+||+++ ++|.+++|++.+--. ..|.. ++ -..+|-+-+.+|.+|+|....
T Consensus 7 ~mkI~~i-~~~~~~~Pl~~p~~~----------------------s~g~~~~~~~~~~V~v~td~G~~G~GE~~~ 58 (385)
T 3i6e_A 7 EQKIIAM-DLWHLALPVVSARDH----------------------GIGRVEGSCEIVVLRLVAEGGAEGFGEASP 58 (385)
T ss_dssp CSBEEEE-EEEEEECCC------------------------------------CEEEEEEEEETTSCEEEEEECC
T ss_pred hcEEEEE-EEEEEecccCCCeec----------------------cCcEEeceeeEEEEEEEECCCCEEEEeecc
Confidence 3789998 488888887654211 11222 22 235666666689999999753
No 21
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=40.49 E-value=9.1 Score=31.89 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=29.9
Q ss_pred ccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEE-EEEEEEecCCCceEEeeeec
Q psy4335 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTR-FKAFVAIGDSNGHIGLGVKC 80 (152)
Q Consensus 8 k~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~r-f~alVvvGn~nG~vG~G~gk 80 (152)
.+|||+++ ++|.+++|++++-. +..|.... -..+|-+-+.+|.+|+|...
T Consensus 4 ~~MkI~~i-~~~~~~~pl~~p~~----------------------~s~~~~~~~~~~~V~v~td~G~~G~GE~~ 54 (383)
T 3i4k_A 4 SDLTIQKV-ESRILDVPLIRPHG----------------------FATTTSTEQHILLVSVHLENGVIGYGEGV 54 (383)
T ss_dssp -CCBEEEE-EEEEEEEEEEEEEE----------------------CSSCEEEEEEEEEEEEEETTSCEEEEEEC
T ss_pred CCCEEEEE-EEEEEeccccCCeE----------------------ecceEEEeeeEEEEEEEECCCCEEEEecc
Confidence 35899988 47777777654311 11122222 23455566568999999964
No 22
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=40.11 E-value=9 Score=32.07 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=31.0
Q ss_pred cCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EEEEEEEecCCCceEEeeeecc
Q psy4335 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 9 ~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvGn~nG~vG~G~gks 81 (152)
.|||+++ +++.+++|++.+-. |..|... +-..+|-+-+.+|.+|+|....
T Consensus 2 ~MkI~~i-~~~~~~~Pl~~p~~----------------------~a~~~~~~~~~~~V~v~td~G~~G~Ge~~~ 52 (379)
T 3r0u_A 2 VSKIIDI-KTSIIKIPLKRTFI----------------------TAVRSTNHIDSLAVELTLDNGVKGYGVAPA 52 (379)
T ss_dssp CCBEEEE-EEEEEEEEEEEEEE----------------------CSSCEEEEEEEEEEEEEETTSCEEEEEEEC
T ss_pred CCEEEEE-EEEEEEeecCCceE----------------------ccCceEEEeEEEEEEEEECCCCEEEEEEEC
Confidence 3788888 47777777654311 1112222 3345666666689999998754
No 23
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}
Probab=39.04 E-value=16 Score=30.63 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=31.8
Q ss_pred ccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCe-eEEEEEEEEecCCCceEEeeeecc
Q psy4335 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQ-RTRFKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 8 k~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr-~~rf~alVvvGn~nG~vG~G~gks 81 (152)
..|||+++ +.|.+++|++++--+- .|. ..+-..+|-+-+ +|.+|+|....
T Consensus 5 ~~MkI~~i-~~~~~~~pl~~p~~~s----------------------~g~~~~~~~~lV~v~t-~G~~G~GE~~~ 55 (400)
T 3mwc_A 5 ESARIDGV-SLYEIVIPMKIPFQIS----------------------SGTCYTRRSLVVEIRE-GDLFGYGESAP 55 (400)
T ss_dssp CCCCCCEE-EEEEEEEECSSCCCBT----------------------TBCCCEEEEEEEEEEE-TTEEEEEEECC
T ss_pred CCcEEEEE-EEEEEeccccCceEcc----------------------CceEeeeeEEEEEEEE-CCeEEEEeccc
Confidence 45899999 4788888876542111 111 123345666777 89999999753
No 24
>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A
Probab=38.76 E-value=7.7 Score=32.01 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=17.0
Q ss_pred CeeEEE-EEEEEecCCCceEEeeeecch
Q psy4335 56 GQRTRF-KAFVAIGDSNGHIGLGVKCSK 82 (152)
Q Consensus 56 Gr~~rf-~alVvvGn~nG~vG~G~gks~ 82 (152)
|+..+. ..+|-+=+.+|.+|+|...+.
T Consensus 24 ~~~~~~~~vlV~i~td~G~~G~GE~~~~ 51 (378)
T 4hpn_A 24 MRFDRRAHVLVEIECDDGTVGWGECLGP 51 (378)
T ss_dssp CEEEEEEEEEEEEEETTSCEEEEEECSC
T ss_pred EEEEEEEEEEEEEEECCCCEEEEEecCC
Confidence 444333 345556666899999986543
No 25
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=37.70 E-value=14 Score=30.88 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=26.2
Q ss_pred ccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEE-EEEEEEecCCCceEEeeeec
Q psy4335 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTR-FKAFVAIGDSNGHIGLGVKC 80 (152)
Q Consensus 8 k~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~r-f~alVvvGn~nG~vG~G~gk 80 (152)
.+|||+++ |+|.+++|++++=- |..|.... -..+|-+=..+|.+|+|...
T Consensus 18 ~~MkIt~I-e~~~~~~Pl~~p~~----------------------~s~g~~~~~~~vlV~i~td~G~~G~Ge~~ 68 (388)
T 4h83_A 18 HGLTITRI-ETIPMVAPLAREFR----------------------GSHYHMTHRATIVTRVHTDAGIIGEAYTG 68 (388)
T ss_dssp --CBEEEE-EEEEEEEEC--------------------------------CCEEEEEEEEEEETTSCEEEEEEC
T ss_pred CCCEEEEE-EEEEEEeeccCCEE----------------------CCCEEEEEEEEEEEEEEECCCCEEEEEec
Confidence 46899999 47888888764311 11122222 23444455568999999853
No 26
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=37.34 E-value=72 Score=21.71 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=27.6
Q ss_pred CccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEee
Q psy4335 38 SLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLG 77 (152)
Q Consensus 38 ~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G 77 (152)
++.-+|+++.... .++.|+..++.. +.+||..|.+-+-
T Consensus 17 ~v~~~V~~~~~~~-~~k~G~~~~v~~-~~l~DeTG~I~~t 54 (106)
T 2k75_A 17 SVIGKITGIHKKE-YESDGTTKSVYQ-GYIEDDTARIRIS 54 (106)
T ss_dssp EEEEEEEEEEEEE-EEETTEEEEEEE-EEEECSSCEEEEE
T ss_pred EEEEEEEEccccc-cccCCCeeEEEE-EEEEcCCCeEEEE
Confidence 3456788887766 778887666666 5679999987663
No 27
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A
Probab=36.09 E-value=12 Score=30.85 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EEEEEEEecCCCceEEeeeecc
Q psy4335 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvGn~nG~vG~G~gks 81 (152)
|||+++ +.|.+++|++++-... .|... +-..+|-+-+.+|.+|+|....
T Consensus 1 MkI~~i-~~~~~~~pl~~p~~~s----------------------~~~~~~~~~~~V~v~td~G~~G~GE~~~ 50 (356)
T 3ro6_B 1 MKIADI-QVRTEHFPLTRPYRIA----------------------FRSIEEIDNLIVEIRTADGLLGLGAASP 50 (356)
T ss_dssp CBEEEE-EEEEEEEEBC--------------------------------CEEEEEEEEEEETTSCEEEEEECC
T ss_pred CEEEEE-EEEEEEecccCCEEec----------------------CeEEEeeeEEEEEEEECCCCEEEecccC
Confidence 678888 4777788876432110 11222 2345666666789999999763
No 28
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=35.49 E-value=18 Score=29.85 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=30.5
Q ss_pred ccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EEEEEEEecCCCceEEeeeecc
Q psy4335 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 8 k~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvGn~nG~vG~G~gks 81 (152)
.++||+++ +++.+++|++++--. ..|... +-..+|-+-+.+|.+|+|....
T Consensus 3 ~~mkI~~i-~~~~~~~pl~~p~~~----------------------s~g~~~~~~~~~V~l~td~G~~G~GE~~~ 54 (365)
T 3ik4_A 3 LPTTIQAI-SAEAINLPLTEPFAI----------------------ASGAQAVAANVLVKVQLADGTLGLGEAAP 54 (365)
T ss_dssp CTTBEEEE-EEEEEEEEBSCC------------------------------CEEEEEEEEEEETTSCEEEEEECC
T ss_pred CCCEEEEE-EEEEEEEecCCCeEc----------------------cCeEEEeeeEEEEEEEECCCCEEEEeccc
Confidence 45899999 478888887643211 112222 2244666666689999999753
No 29
>1wvl_A DNA-binding proteins 7A/7B/7D, GCN4; leucine zipper, protein engineering, synchrotron radiation, thermophIle, X-RAY crystallography; 2.60A {Sulfolobus acidocaldarius} SCOP: b.34.13.1
Probab=35.34 E-value=43 Score=22.10 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=30.9
Q ss_pred cceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHH
Q psy4335 40 KDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVAT 86 (152)
Q Consensus 40 ~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~ 86 (152)
+|+-+++..+.++.+-|+..||.. |.||.-|-|--.-++.+.
T Consensus 11 eekevd~skikkvwrvgkmvsfty-----ddngktgrgavsekdapk 52 (80)
T 1wvl_A 11 EEKEVDTSKIKKVWRVGKMVSFTY-----DDNGKTGRGAVSEKDAPK 52 (80)
T ss_dssp EEEEEEGGGEEEEEEETTEEEEEE-----EETTEEEEEEEEGGGCCH
T ss_pred ccccccHHHHHHHHhhcceEEEEE-----cCCCcccccccccccChH
Confidence 355667777888888899999874 668988888766655443
No 30
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}
Probab=34.78 E-value=16 Score=30.29 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=28.5
Q ss_pred cCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EEEEEEEecCCCceEEeeeec
Q psy4335 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIGDSNGHIGLGVKC 80 (152)
Q Consensus 9 ~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvGn~nG~vG~G~gk 80 (152)
.+||+++ +.|.+++|++++--.. .|..+ +-..+|-+-+.+|.+|+|...
T Consensus 4 ~mkI~~i-~~~~~~~pl~~p~~~s----------------------~~~~~~~~~~~V~i~td~G~~G~GE~~ 53 (381)
T 3fcp_A 4 TATVEQI-ESWIVDVPTIRPHKLS----------------------MTTMGCQSLVIVRLTRSDGICGIGEAT 53 (381)
T ss_dssp CCBEEEE-EEEEEEECBC---------------------------------CEEEEEEEEEETTSCEEEEEEE
T ss_pred CcEEEEE-EEEEEeccccCCeEec----------------------ccEEEeeeEEEEEEEECCCCEEEeccc
Confidence 4899999 4888888876542111 01111 224466666568999999874
No 31
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A
Probab=33.85 E-value=17 Score=30.33 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=29.5
Q ss_pred cCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCC-eeEEE-EEEEEecCCCceEEeeeecc
Q psy4335 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAG-QRTRF-KAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 9 ~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~G-r~~rf-~alVvvGn~nG~vG~G~gks 81 (152)
+|||++++ +|..++|++++- | .+..| ..+.+ ..+|-+=+.+|.+|+|....
T Consensus 2 ~MkI~~i~-~~~~~~pl~~p~---------~------------~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~ 54 (386)
T 3fv9_G 2 SLKITRID-IHRTDLPVRGGV---------Y------------RLSGGREYHSYDATIVSIETDTGLTGWGESTP 54 (386)
T ss_dssp -CCEEEEE-EEEEEEEBSSSC---------E------------EETTTEEESEEEEEEEEEEETTSCEEEEEECC
T ss_pred CCEEEEEE-EEEEEeecCCCc---------e------------EecCceEEeeeeEEEEEEEECCCCEEEEeccc
Confidence 47888884 777777765331 0 01112 22222 35666656689999998753
No 32
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Probab=33.42 E-value=13 Score=30.92 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=13.9
Q ss_pred EEEEEecCCCceEEeeeec
Q psy4335 62 KAFVAIGDSNGHIGLGVKC 80 (152)
Q Consensus 62 ~alVvvGn~nG~vG~G~gk 80 (152)
..+|-+-+.+|.+|+|...
T Consensus 36 ~~~V~v~td~G~~G~GE~~ 54 (382)
T 3dgb_A 36 LVLIRLRCADGIEGLGEST 54 (382)
T ss_dssp EEEEEEEETTSCEEEEEEE
T ss_pred EEEEEEEECCCCEEEEecc
Confidence 3456666568999999875
No 33
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=33.34 E-value=86 Score=19.34 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=23.4
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhh
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKL 97 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~ 97 (152)
....|.+-|.+++ . .|.|.|+++. .|-+.|-..|..
T Consensus 30 h~~~F~~~v~v~~-~--~~~G~G~sKK--~Aeq~AA~~al~ 65 (69)
T 1di2_A 30 HKREFTITCRVET-F--VETGSGTSKQ--VAKRVAAEKLLT 65 (69)
T ss_dssp GGCEEEEEEEETT-E--EEEEEESSHH--HHHHHHHHHHHH
T ss_pred CCCeEEEEEEECC-E--EEEeecCCHH--HHHHHHHHHHHH
Confidence 3456888888876 2 6777777764 566666555543
No 34
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=31.42 E-value=34 Score=22.39 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHhhcceee
Q psy4335 82 KEVATAIRGAIILAKLSVVPV 102 (152)
Q Consensus 82 ~ev~~Ai~kA~~~Ak~nli~v 102 (152)
....+|++.|+..|.+.|.-+
T Consensus 14 ~S~edAi~nAi~~AskTl~ni 34 (68)
T 2cc6_A 14 ESFTAAADDAIDRAEDTLDNV 34 (68)
T ss_dssp SCHHHHHHHHHHHHHHHCSCE
T ss_pred CCHHHHHHHHHHHHHhcccCC
Confidence 458899999999998765444
No 35
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=31.42 E-value=11 Score=31.06 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=29.2
Q ss_pred CCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EEEEEEEecCCCceEEeeeec
Q psy4335 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIGDSNGHIGLGVKC 80 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvGn~nG~vG~G~gk 80 (152)
|||+++ ++|.+++|++++--.. . |..+ +-..+|-+- .+|.+|+|...
T Consensus 1 MkI~~i-~~~~~~~pl~~p~~~s------~----------------~~~~~~~~~~V~v~-d~G~~G~GE~~ 48 (370)
T 1chr_A 1 MKIDAI-EAVIVDVPTKRPIQMS------I----------------TTVHQQSYVIVRVY-SEGLVGVGEGG 48 (370)
T ss_dssp CCCCCC-CEECCCCCCCCCCTTC------C----------------SSCCCCCCEECCBC-SSSCBCCEECC
T ss_pred CEEEEE-EEEEEEccCCCCeEcc------c----------------eEEeeeeEEEEEEE-ECCcEEEEccc
Confidence 689999 5899999987542111 0 1111 112455555 58999999965
No 36
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=31.34 E-value=75 Score=24.10 Aligned_cols=37 Identities=22% Similarity=0.064 Sum_probs=25.5
Q ss_pred eEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 58 RTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 58 ~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
...|.+-|.+++. +|.|.|+++ ..|-+.|-..|-..|
T Consensus 181 ~~~F~v~v~v~~~---~~~G~G~sk--K~Ae~~AA~~AL~~L 217 (221)
T 2nug_A 181 KKKFIVEAKIKEY---RTLGEGKSK--KEAEQRAAEELIKLL 217 (221)
T ss_dssp GCEEEEEEEETTE---EEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCE---EEEEecCCH--HHHHHHHHHHHHHHh
Confidence 4578888888773 677777665 467777777766544
No 37
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=31.13 E-value=72 Score=20.01 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=22.8
Q ss_pred eeEEEEEEEEecCCCceEEeeee-cchhHHHHHHHHHHHHhh
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVK-CSKEVATAIRGAIILAKL 97 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~g-ks~ev~~Ai~kA~~~Ak~ 97 (152)
....|.+-|.+++ -..|-|.| +++ ..|-+.|-..|..
T Consensus 32 h~~~F~~~v~v~g--~~~~~G~G~~sK--K~Aeq~AA~~al~ 69 (73)
T 3adg_A 32 HKSLFQSTVILDG--VRYNSLPGFFNR--KAAEQSAAEVALR 69 (73)
T ss_dssp TSCEEEEEEEETT--EEEECCSCBSSH--HHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECC--EEEEeeeccCCH--HHHHHHHHHHHHH
Confidence 3456888888875 24677777 565 4555566555543
No 38
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=30.88 E-value=35 Score=22.34 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHhhcceeee
Q psy4335 82 KEVATAIRGAIILAKLSVVPVR 103 (152)
Q Consensus 82 ~ev~~Ai~kA~~~Ak~nli~v~ 103 (152)
....+|++.|+..|.+.|.-++
T Consensus 16 ~S~edAi~nAi~~AskTl~ni~ 37 (69)
T 2ux9_A 16 EGLEAAIQAALARARKTLRHLD 37 (69)
T ss_dssp SCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCHHHHHHHHHHHHHhcccCCe
Confidence 4588999999999987665443
No 39
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans}
Probab=30.58 E-value=21 Score=29.93 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=25.0
Q ss_pred ccCCccCHHHHhhcCCCC-CchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EEEEEEEecCCCceEEeeeecc
Q psy4335 8 RDGKIQSLEQIYLFSLPI-KEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 8 k~~~i~~~~~~~~~~l~i-~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvGn~nG~vG~G~gks 81 (152)
++|||+++ +++..++|+ +++-.+ ..|... +-..+|-+=+.+|.+|+|....
T Consensus 21 ~~MkI~~i-~~~~~~~pl~~~p~~~----------------------s~g~~~~~~~~~V~i~td~G~~G~GE~~~ 73 (391)
T 4e8g_A 21 QSMKIAEI-HVYAHDLPVKDGPYTI----------------------ASSTVWSLQTTLVKIVADSGLAGWGETCP 73 (391)
T ss_dssp --CCEEEE-EEEEEEC-------------------------------------CCEEEEEEEEETTSCEEEEEECC
T ss_pred cCCEEEEE-EEEEEeeeCCCCCccc----------------------ccceeeeeeEEEEEEEECCCCEEEecCcC
Confidence 45888888 477777776 433110 112222 2244555655689999999753
No 40
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=30.19 E-value=40 Score=22.09 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHhhcceeee
Q psy4335 82 KEVATAIRGAIILAKLSVVPVR 103 (152)
Q Consensus 82 ~ev~~Ai~kA~~~Ak~nli~v~ 103 (152)
....+|++.|+..|.+.|.-++
T Consensus 16 ~S~edAi~nAi~~AskTl~ni~ 37 (69)
T 2yiz_A 16 DGVDAAIQGGLARAAQTMRALD 37 (69)
T ss_dssp TCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCHHHHHHHHHHHHHhcccCCe
Confidence 4588999999999987665443
No 41
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=29.97 E-value=73 Score=21.06 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=23.2
Q ss_pred EEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 60 RFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 60 rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
+|.+-|.+++ -..|.|.|+++. .|-+.|-..|...|
T Consensus 37 ~F~~~v~v~g--~~~~~G~G~SKK--~Aeq~AA~~AL~~L 72 (88)
T 1x48_A 37 RFICKCKIGQ--TMYGTGSGVTKQ--EAKQLAAKEAYQKL 72 (88)
T ss_dssp CEEEEEEESS--CEEEEEEESSHH--HHHHHHHHHHHHHH
T ss_pred eEEEEEEECC--EEEEEeecCCHH--HHHHHHHHHHHHHH
Confidence 5888888866 346777777764 45555555555444
No 42
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=29.95 E-value=37 Score=22.42 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHhhcceeee
Q psy4335 82 KEVATAIRGAIILAKLSVVPVR 103 (152)
Q Consensus 82 ~ev~~Ai~kA~~~Ak~nli~v~ 103 (152)
....+|++.|+..|.+.|.-++
T Consensus 17 ~S~edAi~nAi~~AskTl~ni~ 38 (72)
T 2vxa_A 17 NGIEEAVNNAIARAGETLRHLR 38 (72)
T ss_dssp SCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCHHHHHHHHHHHHHhhccCCe
Confidence 4588999999999987665443
No 43
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}
Probab=29.82 E-value=16 Score=30.55 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=31.4
Q ss_pred ccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EEEEEEEecCCCceEEeeeecc
Q psy4335 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 8 k~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvGn~nG~vG~G~gks 81 (152)
.++||+++ +++.+++|++++-. |..|... +-..+|-+-+.+|.+|+|....
T Consensus 3 ~~mkI~~i-~~~~~~~pl~~p~~----------------------~s~g~~~~~~~~~V~l~td~G~~G~GE~~~ 54 (389)
T 3s5s_A 3 TPTLIRRV-SIEALDIPLHEPFG----------------------IAGGAQERAANLLVTVELADGTLGFGEAAP 54 (389)
T ss_dssp CTTBEEEE-EEEEEEEEEEEEEE----------------------ETTEEEEEEEEEEEEEEETTSCEEEEEECC
T ss_pred CCCEEEEE-EEEEEEEecCCcee----------------------ccCceEEeeeEEEEEEEECCCCEEEEeccC
Confidence 46888888 47777777653210 1123332 2344666667789999998753
No 44
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=29.18 E-value=1.3e+02 Score=19.92 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=24.5
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....|.+-|.+++ ..|.|.|+++ ..|-+.|-..|...|
T Consensus 46 h~~~F~~~v~i~g---~~~~G~G~SK--K~Aeq~AA~~AL~~L 83 (89)
T 2cpn_A 46 HRKEFTMTCRVER---FIEIGSGTSK--KLAKRNAAAKMLLRV 83 (89)
T ss_dssp SSCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECC---EEEEeeeCCH--HHHHHHHHHHHHHHH
Confidence 4456888888876 2677777665 456666666665443
No 45
>4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A*
Probab=28.77 E-value=27 Score=28.89 Aligned_cols=56 Identities=21% Similarity=0.397 Sum_probs=29.9
Q ss_pred cceeeccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEEE-EEEEEecCCCceEEeeeec
Q psy4335 3 QCLAFRDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRF-KAFVAIGDSNGHIGLGVKC 80 (152)
Q Consensus 3 ~~~~vk~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~rf-~alVvvGn~nG~vG~G~gk 80 (152)
+=..=.+|||++++ +|..++|..+. .|. +..|..... .++|-+=+.+|.+|+|...
T Consensus 3 ~~~~~~sMKI~~I~-~~~~~lPl~~~---------p~~------------~a~g~~~~~~~~lV~v~td~G~~G~GE~~ 59 (376)
T 4h2h_A 3 HHHHHHSLKIAEIQ-LFQHDLPVVNG---------PYR------------IASGDVWSLTTTIVKIIAEDGTIGWGETC 59 (376)
T ss_dssp ------CCBEEEEE-EEEEEEEBTTC---------CBC------------CTTCCBSEEEEEEEEEEETTSCEEEEEEC
T ss_pred CcCCCCCeEEeEEE-EEEEecccCCC---------CeE------------ecCEEEEEEEEEEEEEEECCCCEEEEeec
Confidence 33445689999995 78877774211 111 112333322 3455566668999999864
No 46
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=28.65 E-value=99 Score=19.21 Aligned_cols=38 Identities=21% Similarity=0.031 Sum_probs=23.6
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....|.+-|.+++.. +.|.|+|+ ..|-+.|-..|...|
T Consensus 29 h~~~F~~~v~v~~~~---~~G~G~SK--K~Aeq~AA~~al~~L 66 (71)
T 2b7v_A 29 HAKSFVMSVVVDGQF---FEGSGRNK--KLAKARAAQSALATV 66 (71)
T ss_dssp TTCCEEEEEECSSCE---EEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCEE---EEEeeCCH--HHHHHHHHHHHHHHH
Confidence 345788888887753 35666666 456666666655443
No 47
>2xiw_A DNA-binding protein 7D; HET: MSE; 1.50A {Sulfolobus acidocaldarius}
Probab=28.39 E-value=68 Score=21.15 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=34.9
Q ss_pred ccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHH
Q psy4335 39 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILA 95 (152)
Q Consensus 39 l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~A 95 (152)
=+|+-+++..+.++.+-|+..+|.. |.||.-|-|--.-++.+.-+-..+.+|
T Consensus 21 GeekEVDtSKikkVwrvGKmvsFtY-----ddnGKtGrGaVsEKDAPKELL~Ml~r~ 72 (79)
T 2xiw_A 21 GEEKEVDTSKIRDVSRQGKNVKFLY-----NDNGKYGAGNVDEKDAPKELLDMLARA 72 (79)
T ss_dssp TEEEEEEGGGEEEEEEETTEEEEEE-----EETTEEEEEEEEGGGSCHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHhcceeEEEE-----cCCCcccCCccCcccChHHHHHHHHHH
Confidence 3566677777788888899988864 558998888766665444443333333
No 48
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=28.06 E-value=27 Score=28.88 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEEE-EEEEEecCCCceEEeeeecch
Q psy4335 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRF-KAFVAIGDSNGHIGLGVKCSK 82 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~rf-~alVvvGn~nG~vG~G~gks~ 82 (152)
|||+++ +.+...+|++++-+.+ ..|..+.+ .++|-+=..+|.+|+|.....
T Consensus 1 MkI~~i-~~~~~~~Pl~~p~~~~---------------------a~~~~~~~~~v~V~v~td~G~~G~GE~~~~ 52 (372)
T 3tj4_A 1 MKITAV-EPFILHLPLTSESISD---------------------STHSITHWGVVGAKITTSDGIEGYGFTGTH 52 (372)
T ss_dssp CBEEEE-EEEEEEEECC---------------------------------EEEEEEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEE-EEEEEEecCCCCccCC---------------------CccccCceeEEEEEEEECCCCEEEEeccCc
Confidence 688888 4777788876542111 01222222 345555555899999986543
No 49
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=28.04 E-value=33 Score=22.71 Aligned_cols=19 Identities=26% Similarity=0.057 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHhhcce
Q psy4335 82 KEVATAIRGAIILAKLSVV 100 (152)
Q Consensus 82 ~ev~~Ai~kA~~~Ak~nli 100 (152)
....+|++.|+..|.+.+.
T Consensus 16 ~S~edAi~nAi~~AskTl~ 34 (72)
T 3onr_A 16 TSWEQAAAEAVQRARDSVD 34 (72)
T ss_dssp SCHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 3478999999999986443
No 50
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=27.90 E-value=97 Score=20.89 Aligned_cols=38 Identities=26% Similarity=0.170 Sum_probs=25.8
Q ss_pred EEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcce
Q psy4335 59 TRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVV 100 (152)
Q Consensus 59 ~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli 100 (152)
..|.+-|.+++ -..|.|.|+++ ..|-+.|-..|...|.
T Consensus 46 ~~F~~~V~v~g--~~~~~G~G~SK--K~Aeq~AA~~AL~~L~ 83 (98)
T 1x47_A 46 EPFGASVTIDG--VTYGSGTASSK--KLAKNKAARATLEILI 83 (98)
T ss_dssp CCEEEEEEETT--EEEEEEEESSH--HHHHHHHHHHHHHHHC
T ss_pred CcEEEEEEECC--EEEEEeeeCCH--HHHHHHHHHHHHHHHH
Confidence 56888888876 34677777766 4677777777766553
No 51
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*
Probab=27.89 E-value=23 Score=29.21 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=26.5
Q ss_pred CCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCee-EEEEEEEEecCCCceEEeeee
Q psy4335 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQR-TRFKAFVAIGDSNGHIGLGVK 79 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~-~rf~alVvvGn~nG~vG~G~g 79 (152)
|||+++ +.+.+++|++++-.+. .|.. .+-..+|-+-+.+|.+|+|..
T Consensus 1 MkI~~i-~~~~~~~pl~~p~~~s----------------------~~~~~~~~~~~V~v~td~G~~G~GE~ 48 (367)
T 3dg3_A 1 MKIVAI-GAIPFSIPYTKPLRFA----------------------SGEVHAAEHVLVRVHTDDGIVGVAEA 48 (367)
T ss_dssp CBEEEE-EEEEEEECBC---------------------------------CEEEEEEEEEETTSCEEEEEE
T ss_pred CEEEEE-EEEEEEeeccCCeecc----------------------CeEEeeeeEEEEEEEECCCCEEEEec
Confidence 678888 4788888876542111 1111 123456666566899999984
No 52
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=27.63 E-value=19 Score=29.97 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=29.4
Q ss_pred cCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCe--e-EEEEEEEEecCCCceEEeeeecc
Q psy4335 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQ--R-TRFKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 9 ~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr--~-~rf~alVvvGn~nG~vG~G~gks 81 (152)
.|||+++ +++.+++|++++- . |..|+ . .+-..+|-+=+.+|.+|+|....
T Consensus 2 ~MkI~~i-~~~~~~~pl~~p~-----~-----------------~s~g~~~~~~~~~~~V~v~td~G~~G~GE~~~ 54 (378)
T 3eez_A 2 SLKITRI-TVYQVDLPLEHPY-----W-----------------LSGGRLKFELLDATLVKLETDAGITGWGEGTP 54 (378)
T ss_dssp -CCEEEE-EEEEEEEEBSSCC-----C-----------------------CCCEEEEEEEEEEETTCCCEEEEECC
T ss_pred CcEEEEE-EEEEEeccCCCce-----e-----------------ecCCcceeeeeeEEEEEEEECCCCEEEecccC
Confidence 4889998 4788888876541 0 11121 1 22345555656689999999753
No 53
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=27.38 E-value=20 Score=29.95 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=30.6
Q ss_pred cCCccCHHHHhhcCCCCCc--hhhhhcccCCCccceeEEEeeeeeeecCCee-EEEEEEEEecCCCceEEeeeecc
Q psy4335 9 DGKIQSLEQIYLFSLPIKE--FEIIDFFIGSSLKDEVLKIMPVQKQTRAGQR-TRFKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 9 ~~~i~~~~~~~~~~l~i~e--~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~-~rf~alVvvGn~nG~vG~G~gks 81 (152)
.|||++++ +|..++|+++ +--. ..|.. .+-..+|-+=+.+|.+|+|...+
T Consensus 2 ~MkI~~i~-~~~~~~pl~~~~p~~~----------------------a~~~~~~~~~~~V~v~td~G~~G~GE~~~ 54 (389)
T 3ozy_A 2 SLKITEVK-AHALSTPIPERMRVES----------------------GAGLKLNRQMILVEVRTDEGVTGVGSPSG 54 (389)
T ss_dssp CCCEEEEE-EEEEEEECCGGGCCEE----------------------TTEEBCEEEEEEEEEEETTSCCEEECCCS
T ss_pred CCEEEEEE-EEEEeccCcCCCcccc----------------------cccccccceEEEEEEEECCCCEEEEecCC
Confidence 48899984 7877777664 2111 11111 12345666666689999999764
No 54
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=26.06 E-value=17 Score=29.98 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=14.9
Q ss_pred EEEEEecCCCceEEeeeecc
Q psy4335 62 KAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 62 ~alVvvGn~nG~vG~G~gks 81 (152)
..+|-+-+.+|.+|+|...+
T Consensus 31 ~~~V~v~td~G~~G~GE~~~ 50 (368)
T 3q45_A 31 NVIVRIHTASGHIGYGECSP 50 (368)
T ss_dssp EEEEEEEETTCCEEEEEECC
T ss_pred EEEEEEEECCCCEEEeeccC
Confidence 45666666689999999753
No 55
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=25.82 E-value=32 Score=28.13 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=14.3
Q ss_pred EEEEEecCCCceEEeeeec
Q psy4335 62 KAFVAIGDSNGHIGLGVKC 80 (152)
Q Consensus 62 ~alVvvGn~nG~vG~G~gk 80 (152)
..+|-+-+.+|.+|+|...
T Consensus 31 ~~~V~v~td~G~~G~GE~~ 49 (354)
T 3jva_A 31 SAIVEIETEEGLVGYGEGG 49 (354)
T ss_dssp EEEEEEEETTSCEEEEEEC
T ss_pred EEEEEEEECCCCEEEEeec
Confidence 4566666678999999864
No 56
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=25.78 E-value=20 Score=29.74 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.8
Q ss_pred EEEEecCCCceEEeee
Q psy4335 63 AFVAIGDSNGHIGLGV 78 (152)
Q Consensus 63 alVvvGn~nG~vG~G~ 78 (152)
++|-+=..+|.+|+|.
T Consensus 29 ~~V~v~td~G~~G~GE 44 (374)
T 3sjn_A 29 VIVKVHTDKGIVGVGE 44 (374)
T ss_dssp EEEEEEETTSCEEEEE
T ss_pred EEEEEEECCCCEEEEc
Confidence 5666666689999999
No 57
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Probab=25.27 E-value=31 Score=28.90 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=14.6
Q ss_pred EEEEEecCCCceEEeeeecc
Q psy4335 62 KAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 62 ~alVvvGn~nG~vG~G~gks 81 (152)
..+|-+-+.+|.+|+|....
T Consensus 57 ~~~V~v~td~G~~G~GE~~~ 76 (393)
T 3u9i_A 57 NLLVAVELTDGTRGYGEAAP 76 (393)
T ss_dssp EEEEEEEETTSCEEEEEECC
T ss_pred EEEEEEEECCCCEEEEEeeC
Confidence 34566666689999999753
No 58
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=25.03 E-value=65 Score=26.51 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCceEEeeeecchhHHHHHHHHHHHHhhcc---eeeeecccCCcCCCCceeeeeeeee--e---EEEeecCCC
Q psy4335 70 SNGHIGLGVKCSKEVATAIRGAIILAKLSV---VPVRRGYWGNKIGKPHTVPCKRLTH--G---DQQIPGGRK 134 (152)
Q Consensus 70 ~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl---i~v~rgy~~~~~~~~hTI~~~v~gk--g---V~l~Pap~G 134 (152)
.+.+|+|-+|||=.+..|+..|-.-.+. + .-|+- |. .+|+|.-.|. | |-|+|-|+-
T Consensus 114 ~dD~V~FliGCSFSFE~AL~~aGip~Rh-ie~g~nVpM-Yr-------Tni~c~paG~F~g~mVVSMRPip~~ 177 (276)
T 2pif_A 114 HDDMVAFLIGCSFTFETPLQEAGIEVRH-ITDGCNVPM-YR-------TNRACRPAGRLHGEMVVSMRPIPAD 177 (276)
T ss_dssp CSSEEEEEECCSCCSHHHHHHHTCCCHH-HHTTCCCCE-EE-------EEEECCCBTTBCCEEEEEEEEEEGG
T ss_pred cCceEEEeccccccHHHHHHHCCCCccc-ccCCCcccc-Ee-------cccccccccCcCCCeEEEeecCCHH
Confidence 6899999999999988888776422111 1 11121 31 4788887777 4 999998854
No 59
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=24.53 E-value=1.2e+02 Score=19.04 Aligned_cols=38 Identities=21% Similarity=-0.010 Sum_probs=23.2
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....|.+-|.+++.. ..|.|+|+- .|=+.|-..|...|
T Consensus 32 h~~~F~~~v~v~g~~---~~G~G~SKK--~Aeq~AA~~al~~L 69 (73)
T 2b7t_A 32 HAPLFVMSVEVNGQV---FEGSGPTKK--KAKLHAAEKALRSF 69 (73)
T ss_dssp SSCEEEEEEESSSSE---EEEEESSHH--HHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCEE---EEeecCCHH--HHHHHHHHHHHHHH
Confidence 456788888888754 255666654 45555555554433
No 60
>3p3c_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3; 1.25A {Aquifex aeolicus} PDB: 1xxe_A* 2jt2_A* 1p42_A* 1yh8_A* 1yhc_A* 3p76_A* 2ies_A* 2ier_A* 2o3z_A* 2j65_A* 2go3_A* 2go4_A*
Probab=24.52 E-value=35 Score=27.98 Aligned_cols=13 Identities=8% Similarity=-0.092 Sum_probs=11.9
Q ss_pred EEEeecCCCccee
Q psy4335 126 DQQIPGGRKSKVL 138 (152)
Q Consensus 126 V~l~Pap~GtGiv 138 (152)
+.++|||.++|++
T Consensus 25 ltl~PA~~~tGi~ 37 (274)
T 3p3c_A 25 LIIHPEKEGTGIR 37 (274)
T ss_dssp EEEEECCTTCCEE
T ss_pred EEEEeCCCCCCEE
Confidence 7889999999986
No 61
>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A
Probab=23.48 E-value=2.7e+02 Score=21.81 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=28.3
Q ss_pred CCccceeEEEeeeeeeecCCeeE-EEEEEEEec--CCCc--eEEeeeecc-hhHHHHHHHHHHHH
Q psy4335 37 SSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIG--DSNG--HIGLGVKCS-KEVATAIRGAIILA 95 (152)
Q Consensus 37 ~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvG--n~nG--~vG~G~gks-~ev~~Ai~kA~~~A 95 (152)
..|..+++.+..-.--+..|+.. .+.|.|=|- |+.- -+|+|.... +.-..|+++|...|
T Consensus 82 NGWSs~I~~~~vd~~d~~~gk~~v~~~aiVRVtLkDGt~~EdiG~G~~~n~~~kg~A~ekAKKeA 146 (209)
T 1h2i_A 82 NGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEA 146 (209)
T ss_dssp TTEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEETTSCEEEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred CCCeeEEEEeeceeEeccCCeEEEEEEEEEEEEECCCCEecceeeEEEecCchHHHHHHHHHHHH
Confidence 35777887775322122344432 344444333 3332 477776552 33444444444444
No 62
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=23.43 E-value=25 Score=29.43 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=27.4
Q ss_pred ccCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCee-EEEEEEEEecCCCceEEeeee
Q psy4335 8 RDGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQR-TRFKAFVAIGDSNGHIGLGVK 79 (152)
Q Consensus 8 k~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~-~rf~alVvvGn~nG~vG~G~g 79 (152)
.+|||++++ +|..++|++++--+- .|.. .+-.++|-+=..+|.+|+|..
T Consensus 8 ~~mkI~~i~-~~~~~~pl~~p~~~s----------------------~~~~~~~~~~~V~v~td~G~~G~GE~ 57 (392)
T 3ddm_A 8 ASITPARVR-AHVFRYPVSTPVKTS----------------------FGTMHDRPAVLVEVEDSDGAVGWGEV 57 (392)
T ss_dssp CCBCCCEEE-EEEEEEEC---------------------------------CEEEEEEEEEECTTSCEEEEEC
T ss_pred CCCEEEEEE-EEEEeccCCCcccCc----------------------CceeecceEEEEEEEECCCCEEEEEe
Confidence 368898884 777777765431110 0111 123456666666899999997
No 63
>3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1}
Probab=22.87 E-value=46 Score=27.74 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=14.1
Q ss_pred EEEEEecCCCceEEeeeec
Q psy4335 62 KAFVAIGDSNGHIGLGVKC 80 (152)
Q Consensus 62 ~alVvvGn~nG~vG~G~gk 80 (152)
..+|-+=+.+|.+|+|...
T Consensus 31 ~~~V~v~td~G~~G~GE~~ 49 (388)
T 3qld_A 31 AILVQLVDADGIEGWSECV 49 (388)
T ss_dssp EEEEEEEETTSCEEEEEEC
T ss_pred EEEEEEEECCCCEEEEecc
Confidence 3456666668999999865
No 64
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Probab=21.50 E-value=41 Score=27.94 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=12.4
Q ss_pred EEEeecCCCcceee
Q psy4335 126 DQQIPGGRKSKVLS 139 (152)
Q Consensus 126 V~l~Pap~GtGiva 139 (152)
+.++|||.++|++=
T Consensus 26 ltl~PA~~~tGi~F 39 (299)
T 3uhm_A 26 LTLKPAPVDTGIVF 39 (299)
T ss_dssp EEEECCCTTCCEEE
T ss_pred EEEEeCCCCCCEEE
Confidence 78999999999873
No 65
>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB: 3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A*
Probab=21.45 E-value=41 Score=27.95 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=12.4
Q ss_pred EEEeecCCCcceee
Q psy4335 126 DQQIPGGRKSKVLS 139 (152)
Q Consensus 126 V~l~Pap~GtGiva 139 (152)
+.++|||.++|++=
T Consensus 26 ltl~PA~~~tGi~F 39 (300)
T 3p3g_A 26 LTLRPAPANTGVIY 39 (300)
T ss_dssp EEEECCCTTCCEEE
T ss_pred EEEEeCCCCCCEEE
Confidence 78999999999873
No 66
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=21.39 E-value=44 Score=27.58 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.1
Q ss_pred EEEEEecCCCceEEeeeecc
Q psy4335 62 KAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 62 ~alVvvGn~nG~vG~G~gks 81 (152)
..+|-+=+.+|.+|+|...+
T Consensus 52 ~~~V~v~td~G~~G~GE~~~ 71 (388)
T 2nql_A 52 SVLVRMTTEAGTVGWGETYG 71 (388)
T ss_dssp EEEEEEEETTCCEEEEEEEC
T ss_pred EEEEEEEECCCCEEEEEecC
Confidence 56676765689999998763
No 67
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=20.50 E-value=20 Score=22.94 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=20.0
Q ss_pred EEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHH
Q psy4335 59 TRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILA 95 (152)
Q Consensus 59 ~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~A 95 (152)
..|.+-|.+++ ..|.|.|+++. .|-+.|-..|
T Consensus 38 ~~F~~~v~i~~---~~~~G~G~sKK--~Aeq~AA~~a 69 (76)
T 1ekz_A 38 KNFITACIVGS---IVTEGEGNGKK--VSKKRAAEKM 69 (76)
T ss_dssp SCSSEEEEETT---EEEEECCCSTT--SSSHHHHHHH
T ss_pred CcEEEEEEECC---EEEEEeeCCHH--HHHHHHHHHH
Confidence 45677777754 78888888875 3334443333
No 68
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Probab=20.49 E-value=43 Score=28.10 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=15.4
Q ss_pred EEEEEecCCCceEEeeeecc
Q psy4335 62 KAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 62 ~alVvvGn~nG~vG~G~gks 81 (152)
..+|-+-+.+|.+|+|....
T Consensus 54 ~~~V~v~td~G~~G~GE~~~ 73 (398)
T 4dye_A 54 RTVVRVRTDSGVEGWGETMW 73 (398)
T ss_dssp EEEEEEEETTSCEEEEEEEC
T ss_pred EEEEEEEECCCCEEEEeecC
Confidence 45666666689999999765
Done!