Query psy4335
Match_columns 152
No_of_seqs 120 out of 1081
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 22:58:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4335.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4335hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uube2 d.50.1.2 (E:5-73) Ribo 99.9 1.3E-27 9.5E-32 161.2 8.9 67 38-104 1-67 (69)
2 d2qale2 d.50.1.2 (E:9-77) Ribo 99.9 1.3E-27 9.2E-32 161.3 5.7 68 38-105 1-68 (69)
3 d1pkpa2 d.50.1.2 (A:4-77) Ribo 99.9 2.8E-27 2E-31 161.5 6.8 69 36-104 5-73 (74)
4 d1pkpa1 d.14.1.1 (A:78-148) Ri 99.4 9.3E-14 6.8E-18 93.1 3.1 37 115-151 2-42 (71)
5 d2uube1 d.14.1.1 (E:74-154) Ri 99.3 7.9E-13 5.7E-17 90.6 3.3 36 116-151 2-41 (81)
6 d2qale1 d.14.1.1 (E:78-158) Ri 99.2 9.6E-13 7E-17 90.1 1.8 36 116-151 2-41 (81)
7 d1nu5a2 d.54.1.1 (A:1-126) Chl 84.8 0.14 1E-05 34.4 1.2 37 56-93 24-68 (126)
8 d1jpdx2 d.54.1.1 (X:-2-113) L- 79.4 0.14 1E-05 33.7 -0.5 50 10-83 2-52 (116)
9 d1wuea2 d.54.1.1 (A:1001-1126) 78.5 0.18 1.3E-05 33.1 -0.2 21 61-81 30-50 (126)
10 d1wufa2 d.54.1.1 (A:1001-1126) 73.9 0.38 2.7E-05 32.3 0.4 25 56-80 24-49 (126)
11 d1rvka2 d.54.1.1 (A:1-126) Hyp 73.5 0.41 3E-05 32.3 0.6 69 10-97 1-71 (126)
12 d2chra2 d.54.1.1 (A:1-126) Chl 72.1 0.61 4.4E-05 31.0 1.2 48 10-81 1-49 (126)
13 d1jpma2 d.54.1.1 (A:1-125) L-A 66.9 0.88 6.4E-05 29.9 1.1 20 62-81 31-50 (125)
14 d1di2a_ d.50.1.1 (A:) Double-s 66.3 8.5 0.00062 22.9 5.8 39 56-99 29-67 (69)
15 d2nuga2 d.50.1.1 (A:151-218) R 64.6 9.1 0.00066 22.6 5.6 39 54-97 27-65 (68)
16 d1p42a1 d.14.1.7 (A:2-127) UDP 62.2 2.5 0.00018 29.0 2.8 13 126-138 25-37 (120)
17 d2dixa1 d.50.1.1 (A:7-79) Inte 61.7 10 0.00076 22.6 5.6 43 51-98 25-67 (73)
18 d2mnra2 d.54.1.1 (A:3-132) Man 60.4 0.99 7.2E-05 29.5 0.3 51 9-82 1-52 (130)
19 d1o0wa2 d.50.1.1 (A:168-236) R 57.2 15 0.0011 21.4 5.7 39 57-99 30-68 (69)
20 d2cpna1 d.50.1.1 (A:150-225) T 54.7 18 0.0013 21.6 5.8 37 56-97 38-74 (76)
21 d2gl5a2 d.54.1.1 (A:1-122) Put 54.4 3.9 0.00028 26.7 2.7 42 10-79 1-42 (122)
22 d1sjda2 d.54.1.1 (A:1-125) N-a 51.0 1.9 0.00014 27.7 0.5 16 10-26 1-16 (125)
23 d1uhza_ d.50.1.1 (A:) staufen 50.8 20 0.0015 22.3 5.8 39 56-99 35-73 (89)
24 d1r0ma2 d.54.1.1 (A:6-132) N-a 48.9 1.4 9.9E-05 28.7 -0.5 19 8-27 1-19 (127)
25 d1x47a1 d.50.1.1 (A:8-92) Dgcr 40.2 16 0.0012 22.4 3.9 41 56-100 36-76 (85)
26 d1t4oa_ d.50.1.1 (A:) RNase II 39.0 36 0.0026 20.5 5.4 42 55-99 32-73 (81)
27 d2cc6a1 d.230.2.1 (A:2-65) Fla 37.3 11 0.00082 22.9 2.6 22 82-103 13-34 (64)
28 d2ux9a1 d.230.2.1 (A:2-67) Unc 36.8 12 0.00085 22.9 2.6 23 82-104 15-37 (66)
29 d1bf4a_ b.34.13.1 (A:) DNA-bin 34.0 16 0.0011 21.7 2.8 43 40-86 10-52 (63)
30 d1x49a1 d.50.1.1 (A:8-92) dsRN 33.9 33 0.0024 20.9 4.6 40 56-99 35-74 (85)
31 d1whqa_ d.50.1.1 (A:) ATP-depe 30.5 50 0.0037 20.8 5.3 41 56-99 33-73 (99)
32 d1x48a1 d.50.1.1 (A:8-83) dsRN 29.7 37 0.0027 20.3 4.3 40 56-99 26-65 (76)
33 d1muca2 d.54.1.1 (A:4-130) Muc 28.4 6.4 0.00047 24.9 0.3 20 62-81 31-50 (127)
34 d1w5fa2 d.79.2.1 (A:216-336) C 27.7 16 0.0011 24.4 2.2 25 71-95 20-45 (121)
35 d1kn0a_ d.50.1.3 (A:) The homo 25.7 1E+02 0.0076 21.6 7.8 73 25-97 42-128 (184)
36 d2b7ta1 d.50.1.1 (A:1-73) dsRN 25.2 63 0.0046 19.0 5.1 38 58-100 33-70 (73)
37 d1qu6a1 d.50.1.1 (A:1-90) dsRN 25.1 26 0.0019 21.7 2.9 41 55-99 40-80 (90)
38 d2b7va1 d.50.1.1 (A:1-71) dsRN 24.2 52 0.0038 19.3 4.2 39 57-100 29-67 (71)
39 d2dmya1 d.50.1.1 (A:8-91) Sper 21.8 81 0.0059 19.0 5.9 39 56-99 36-74 (84)
40 d2pifa1 d.382.1.1 (A:7-262) Un 21.5 20 0.0015 27.3 2.0 56 70-134 108-171 (256)
41 d2vapa2 d.79.2.1 (A:232-354) C 21.2 27 0.002 23.0 2.5 25 71-95 17-42 (123)
No 1
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.94 E-value=1.3e-27 Score=161.18 Aligned_cols=67 Identities=30% Similarity=0.491 Sum_probs=65.7
Q ss_pred CccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcceeeee
Q psy4335 38 SLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR 104 (152)
Q Consensus 38 ~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli~v~r 104 (152)
+|+|++|+++||++||++||++||+|+|++||+||++|+|.|||+|+++||+||+.+|++||++|+.
T Consensus 1 d~~e~vv~i~rV~k~tk~Gr~~~f~alvvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nm~~Vpl 67 (69)
T d2uube2 1 DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPL 67 (69)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHSEEECCC
T ss_pred CceeEEEEEEeeeEEEcCCceeEEEEEEEEECCCCcEeeccccchHHHHHHHHHHHHHHhCcEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999999999986
No 2
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=1.3e-27 Score=161.25 Aligned_cols=68 Identities=28% Similarity=0.516 Sum_probs=66.3
Q ss_pred CccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcceeeeec
Q psy4335 38 SLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRG 105 (152)
Q Consensus 38 ~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli~v~rg 105 (152)
+|+|++|+++||++||++||++||+|+|++||+||++|+|+|||+|+++||+||+..|++||++|+++
T Consensus 1 dl~e~vi~i~Rv~k~t~~Gr~~~f~alVvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nl~~V~l~ 68 (69)
T d2qale2 1 ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALN 68 (69)
T ss_dssp CCEEEEEEEECCCCCBTTBCCCCCEEEEEEECSSSBCCEEEEECSSHHHHHHHHHHHHHSSCCBCCCB
T ss_pred CceeEEEEEeeeEEEecCCceeEEEEEEEeeCCCCcEeEeeeccccHHHHHHHHHHHHHhCcEEEeCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999983
No 3
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.94 E-value=2.8e-27 Score=161.50 Aligned_cols=69 Identities=39% Similarity=0.595 Sum_probs=66.6
Q ss_pred CCCccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcceeeee
Q psy4335 36 GSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR 104 (152)
Q Consensus 36 ~~~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli~v~r 104 (152)
..+|+|++|+++||||||++||++||+|+|++||+||++|+|.|||+|+.+||+||..+|++||++|+.
T Consensus 5 ~~~l~e~vi~i~rV~k~tk~Gr~~~f~a~VvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nl~~Vpl 73 (74)
T d1pkpa2 5 KLELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPI 73 (74)
T ss_dssp GSCCEEEEEEEECSSSBCSSCCSSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSCEECCC
T ss_pred cCCceEEEEEEeeeeEEecCCceeEEEEEEEeeCCCCcEEEEEEEchHHHHHHHHHHHHHHhCCEEeec
Confidence 358999999999999999999999999999999999999999999999999999999999999999874
No 4
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.37 E-value=9.3e-14 Score=93.13 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=36.1
Q ss_pred ceeeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 115 HTVPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 115 hTI~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
+||||++.|| + |.|+|||+|+||+|++.+++||+|||
T Consensus 2 ~TIph~v~gk~gs~~V~l~PAp~GtGliag~~vr~il~laG 42 (71)
T d1pkpa1 2 TTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAG 42 (71)
T ss_dssp TBCSSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHHT
T ss_pred CeeeEEEEEEECeEEEEEEECCCCCccccCHHHHHHHHHcC
Confidence 7999999999 6 99999999999999999999999998
No 5
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.27 E-value=7.9e-13 Score=90.59 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=35.2
Q ss_pred eeeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 116 TVPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 116 TI~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
||||++.|| + |.|+|||+||||+|++.+++||++||
T Consensus 2 TIph~v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaG 41 (81)
T d2uube1 2 TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAG 41 (81)
T ss_dssp BCSSCEEEEETTEEEEEEECCTTCCEECCHHHHHHHHHTT
T ss_pred ccceEEEEEECcEEEEEEECCCCCcccccHHHHHHHHHhC
Confidence 999999999 6 99999999999999999999999998
No 6
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.22 E-value=9.6e-13 Score=90.13 Aligned_cols=36 Identities=8% Similarity=-0.025 Sum_probs=35.2
Q ss_pred eeeeeeeee-e---EEEeecCCCcceeeChhhHHhhcccC
Q psy4335 116 TVPCKRLTH-G---DQQIPGGRKSKVLSSPENLKVTSTSK 151 (152)
Q Consensus 116 TI~~~v~gk-g---V~l~Pap~GtGiva~~~~k~il~lAg 151 (152)
||||++.|| + |.|+|||+|+||+|++.+++||++||
T Consensus 2 TIph~v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaG 41 (81)
T d2qale1 2 TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAG 41 (81)
T ss_dssp BCSSCBCCEETTEEEEBCBCCTTSCEECCHHHHHHHHHHT
T ss_pred cccEEEEEEECcEEEEEEECCCCCccccCHHHHHHHHHcC
Confidence 899999999 6 99999999999999999999999998
No 7
>d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}
Probab=84.80 E-value=0.14 Score=34.45 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=21.6
Q ss_pred CeeEEEE-EEEEecCCCceEEeeeecc-------hhHHHHHHHHHH
Q psy4335 56 GQRTRFK-AFVAIGDSNGHIGLGVKCS-------KEVATAIRGAII 93 (152)
Q Consensus 56 Gr~~rf~-alVvvGn~nG~vG~G~gks-------~ev~~Ai~kA~~ 93 (152)
|...... .+|-+-+ ||.+|+|...+ .|..+++..++.
T Consensus 24 ~~~~~~~~~~V~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~i~ 68 (126)
T d1nu5a2 24 TTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIID 68 (126)
T ss_dssp EEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHH
T ss_pred eEEEeeeEEEEEEEc-CCeEEEeeccccCCCccccccHHHHHHHHH
Confidence 3344333 4444565 79999999754 355555555444
No 8
>d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}
Probab=79.38 E-value=0.14 Score=33.67 Aligned_cols=50 Identities=14% Similarity=0.309 Sum_probs=29.4
Q ss_pred CCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEEEEEEEE-ecCCCceEEeeeecchh
Q psy4335 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVA-IGDSNGHIGLGVKCSKE 83 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~rf~alVv-vGn~nG~vG~G~gks~e 83 (152)
.||+++ ++|..++|++++=. |..|..+....+++ +-| +|.+|+|...+..
T Consensus 2 ~kI~~i-~~~~~~~pl~~pf~----------------------~s~g~~~~~~~liV~lt~-~G~~G~GE~~~~~ 52 (116)
T d1jpdx2 2 SHMRTV-KVFEEAWPLHTPFV----------------------IARGSRSEARVVVVELEE-EGIKGTGECTPYP 52 (116)
T ss_dssp CSCCEE-EEEEEEEEBSCC----------------------------CCSEEEEEEEEEEE-TTEEEEEEECCCG
T ss_pred CeeEEE-EEEEEEEeccCCEE----------------------CCCceEEEeEEEEEEEEE-CCEEEEEEEEccC
Confidence 478888 47888888764321 12234444444433 455 8999999987753
No 9
>d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}
Probab=78.50 E-value=0.18 Score=33.14 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=15.0
Q ss_pred EEEEEEecCCCceEEeeeecc
Q psy4335 61 FKAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 61 f~alVvvGn~nG~vG~G~gks 81 (152)
...+|-+=+.+|.+|+|...+
T Consensus 30 ~~~~v~i~t~~G~~G~GE~~~ 50 (126)
T d1wuea2 30 AFDLFVITDEQGNQGFGELVA 50 (126)
T ss_dssp EEEEEEEEETTSCEEEEEECC
T ss_pred eEEEEEEEECCCcEEEEEEec
Confidence 344555677899999998653
No 10
>d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}
Probab=73.87 E-value=0.38 Score=32.34 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=16.4
Q ss_pred CeeEEEE-EEEEecCCCceEEeeeec
Q psy4335 56 GQRTRFK-AFVAIGDSNGHIGLGVKC 80 (152)
Q Consensus 56 Gr~~rf~-alVvvGn~nG~vG~G~gk 80 (152)
|...... .+|-+=+.+|.+|+|...
T Consensus 24 ~~~~~~~~~iv~i~t~~G~~G~GE~~ 49 (126)
T d1wufa2 24 GELKSKDFYIIELINEEGIHGYGELE 49 (126)
T ss_dssp EEEEEEEEEEEEEECSSSCEEEEEEC
T ss_pred EEEEEEEEEEEEEEECCCcEEEEEEe
Confidence 4344444 444467889999999754
No 11
>d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=73.48 E-value=0.41 Score=32.26 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=38.5
Q ss_pred CCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEEE-EEEEEecCCCceEEeeeecchhH-HHH
Q psy4335 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRF-KAFVAIGDSNGHIGLGVKCSKEV-ATA 87 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~rf-~alVvvGn~nG~vG~G~gks~ev-~~A 87 (152)
|||++++ ++.+++|++++- |. ... +..|..... .++|-+=+.+|..|+|...+.+. ...
T Consensus 1 MkIt~v~-~~~~~~pl~~~~--~~----a~~------------~~~g~~~~~~~v~V~v~td~G~~G~Ge~~~~~~~~~~ 61 (126)
T d1rvka2 1 MIITDVE-VRVFRTTTRRHS--DS----AGH------------AHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEIVRPHV 61 (126)
T ss_dssp CBEEEEE-EEEEEEEEEEEE--CT----TSC------------EEEEEEEEEEEEEEEEEETTSCEEEEEECGGGGCHHH
T ss_pred CEEEEEE-EEEEEeeCCCcc--cc----ccc------------cCCCCcceeEEEEEEEEECCCCEEEEEeCCHHHHHHH
Confidence 6788884 677777765433 11 110 011223333 34555677799999999886654 344
Q ss_pred HHHHHHHHhh
Q psy4335 88 IRGAIILAKL 97 (152)
Q Consensus 88 i~kA~~~Ak~ 97 (152)
+++.+.....
T Consensus 62 i~~~l~~~li 71 (126)
T d1rvka2 62 IEKFVKKVLI 71 (126)
T ss_dssp HHHTHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555444433
No 12
>d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=72.13 E-value=0.61 Score=31.04 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEEEEEE-EEecCCCceEEeeeecc
Q psy4335 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAF-VAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~rf~al-VvvGn~nG~vG~G~gks 81 (152)
|||+++| ++.+++|++++- .+..|.......+ |-+-+ +|.+|+|.+.+
T Consensus 1 MkI~~ie-~~~~~~Pl~~p~----------------------~~s~~~~~~~~~v~v~i~~-dG~~G~GE~~~ 49 (126)
T d2chra2 1 MKIDAIE-AVIVDVPTKRPI----------------------QMSITTVHQQSYVIVRVYS-EGLVGVGEGGS 49 (126)
T ss_dssp CCCCEEE-EEEEEEEEEEEE----------------------ECSSCEEEEEEEEEEEEEB-TTBCCEEECCC
T ss_pred CEEEEEE-EEEEeccccCce----------------------EeccceEeeeeEEEEEEEc-CCceEeEeecc
Confidence 5777773 666666654321 1223444444443 33556 69999998754
No 13
>d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}
Probab=66.89 E-value=0.88 Score=29.94 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=14.5
Q ss_pred EEEEEecCCCceEEeeeecc
Q psy4335 62 KAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 62 ~alVvvGn~nG~vG~G~gks 81 (152)
.++|-+=+.+|.+|+|...+
T Consensus 31 ~~iv~i~t~~G~~G~GE~~~ 50 (125)
T d1jpma2 31 SVIVRITYDSGAVGWGEAPP 50 (125)
T ss_dssp EEEEEEEETTSCEEEEEECC
T ss_pred EEEEEEEECCCCEEEEEecc
Confidence 34555666789999998753
No 14
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=66.34 E-value=8.5 Score=22.86 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=25.2
Q ss_pred CeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 56 GQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 56 Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
.....|.+-|.++| ..+.|.|+++ ..|-+.|-..|..+|
T Consensus 29 ~h~~~F~~~v~v~~---~~~~g~g~sK--K~Aeq~AA~~aL~~L 67 (69)
T d1di2a_ 29 PHKREFTITCRVET---FVETGSGTSK--QVAKRVAAEKLLTKF 67 (69)
T ss_dssp GGGCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEEEee---EEEecCcCcH--HHHHHHHHHHHHHHh
Confidence 45567888888876 4555666665 456667766665543
No 15
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=64.56 E-value=9.1 Score=22.56 Aligned_cols=39 Identities=21% Similarity=0.053 Sum_probs=25.1
Q ss_pred cCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhh
Q psy4335 54 RAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKL 97 (152)
Q Consensus 54 k~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~ 97 (152)
.......|.+-|.++| ..+.|.|+++ ..|=+.|-..|..
T Consensus 27 g~~h~~~F~~~v~v~~---~~~~g~g~sK--K~Aeq~AA~~aL~ 65 (68)
T d2nuga2 27 GPHHKKKFIVEAKIKE---YRTLGEGKSK--KEAEQRAAEELIK 65 (68)
T ss_dssp SCGGGCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEEECC---EEEEEecCCH--HHHHHHHHHHHHH
Confidence 3355678899899876 4466677765 4566666555543
No 16
>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=62.25 E-value=2.5 Score=28.98 Aligned_cols=13 Identities=8% Similarity=-0.092 Sum_probs=12.4
Q ss_pred EEEeecCCCccee
Q psy4335 126 DQQIPGGRKSKVL 138 (152)
Q Consensus 126 V~l~Pap~GtGiv 138 (152)
+.++|||.++|++
T Consensus 25 v~l~PA~~~~GI~ 37 (120)
T d1p42a1 25 LIIHPEKEGTGIR 37 (120)
T ss_dssp EEEEECCTTCCEE
T ss_pred EEEEeCCCCcEEE
Confidence 9999999999997
No 17
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.65 E-value=10 Score=22.62 Aligned_cols=43 Identities=23% Similarity=0.085 Sum_probs=28.2
Q ss_pred eeecCCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhc
Q psy4335 51 KQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLS 98 (152)
Q Consensus 51 k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~n 98 (152)
+.+.......|.+.|.+|+ ..+.|.|+++- .|-+.|-..|...
T Consensus 25 ~~~Gp~h~~~F~~~v~v~~---~~~~g~g~sKK--~Aeq~AA~~al~~ 67 (73)
T d2dixa1 25 RSDVQIHVPTFTFRVTVGD---ITCTGEGTSKK--LAKHRAAEAAINI 67 (73)
T ss_dssp EEECSSSSCEEEEEEEETT---EEEEECSSCTT--HHHHHHHHHHHHH
T ss_pred eeeCCCCCcEEEEEEEEEE---EEEEeccccHH--HHHHHHHHHHHHH
Confidence 3444466778999999965 46777777764 5566665555543
No 18
>d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]}
Probab=60.37 E-value=0.99 Score=29.46 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=30.3
Q ss_pred cCCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeE-EEEEEEEecCCCceEEeeeecch
Q psy4335 9 DGKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRT-RFKAFVAIGDSNGHIGLGVKCSK 82 (152)
Q Consensus 9 ~~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~-rf~alVvvGn~nG~vG~G~gks~ 82 (152)
|++|++++ ++..++|++.+ |. +..|... +-..+|-+=..+|.+|+|...+.
T Consensus 1 ~~~I~~i~-~~~~~~Pl~~p-----~~-----------------~s~~~~~~~~~~~V~i~t~~G~~G~Ge~~~~ 52 (130)
T d2mnra2 1 EVLITGLR-TRAVNVPLAYP-----VH-----------------TAVGTVGTAPLVLIDLATSAGVVGHSYLFAY 52 (130)
T ss_dssp CCBEEEEE-EEEEEECCSSC-----EE-----------------ETTEEECSEEEEEEEEEETTSCEEEEEEECS
T ss_pred CCEEEEEE-EEEEEecccCC-----ee-----------------ccceEEeeceEEEEEEEECCccceeeeeeec
Confidence 67888884 77777776533 11 0111111 22355666555899999987654
No 19
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=57.19 E-value=15 Score=21.44 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=24.9
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....|.+-|.++|. .+|-|.|+++ ..|=+.|-..|..+|
T Consensus 30 h~~~F~~~v~v~~~--~~~~g~g~sK--K~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 30 GDRIFVVEVRVNGK--TIATGKGRTK--KEAEKEAARIAYEKL 68 (69)
T ss_dssp TSCEEEEEEEETTE--EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCE--EEEEEEeCCH--HHHHHHHHHHHHHHh
Confidence 44578888888763 2455666554 467777777776554
No 20
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.67 E-value=18 Score=21.61 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=22.5
Q ss_pred CeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhh
Q psy4335 56 GQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKL 97 (152)
Q Consensus 56 Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~ 97 (152)
.....|.+-|.++| ..|.|.|+++ ..|-+.|-..|..
T Consensus 38 ~h~~~F~~~v~v~~---~~~~g~G~SK--K~Aeq~AA~~aL~ 74 (76)
T d2cpna1 38 AHRKEFTMTCRVER---FIEIGSGTSK--KLAKRNAAAKMLL 74 (76)
T ss_dssp SSSCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHH
T ss_pred CCCccEEEEEEecc---eeeccccccH--HHHHHHHHHHHHH
Confidence 34556777777765 5566776665 4566666555543
No 21
>d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Probab=54.37 E-value=3.9 Score=26.75 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=28.7
Q ss_pred CCccCHHHHhhcCCCCCchhhhhcccCCCccceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeee
Q psy4335 10 GKIQSLEQIYLFSLPIKEFEIIDFFIGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVK 79 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~e~eiid~~~~~~l~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~g 79 (152)
|||+++ |+|..++|.+++ .. .+++ ..+|-+-+.+|..|+|..
T Consensus 1 MKI~~I-e~~~~~~p~~~~-----~~-~~~~---------------------~iiV~i~td~Gi~G~Ge~ 42 (122)
T d2gl5a2 1 LKITSI-EVFDCELKKRDQ-----TM-SSYN---------------------PVLIRVNTDSGLSGIGEV 42 (122)
T ss_dssp CCEEEE-EEEECCGGGTCG-----GG-TTCC---------------------CEEEEEEETTSCEEEEEE
T ss_pred CEEeEE-EEEEEcCCCCCC-----cc-ccce---------------------eEEEEEEECCCCEEEEee
Confidence 799999 589888886643 11 1111 146777767899999975
No 22
>d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}
Probab=50.96 E-value=1.9 Score=27.69 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=10.7
Q ss_pred CCccCHHHHhhcCCCCC
Q psy4335 10 GKIQSLEQIYLFSLPIK 26 (152)
Q Consensus 10 ~~i~~~~~~~~~~l~i~ 26 (152)
|||++++ ++..++|++
T Consensus 1 MKI~~i~-~~~i~~Pl~ 16 (125)
T d1sjda2 1 MKLSGVE-LRRVQMPLV 16 (125)
T ss_dssp CCCCEEE-EEEEEEEEE
T ss_pred CEEEEEE-EEEEecccc
Confidence 6787774 666666654
No 23
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.79 E-value=20 Score=22.30 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=24.8
Q ss_pred CeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 56 GQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 56 Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
.+...|.+.|.++| ....|.|+++ ..|-+.|-..|...|
T Consensus 35 ~h~~~F~~~v~v~~---~~~~g~g~SK--K~Ae~~AA~~aL~~l 73 (89)
T d1uhza_ 35 PRRREFVMQVKVGN---EVATGTGPNK--KIAKKNAAEAMLLQL 73 (89)
T ss_dssp STTCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCceeEEEEEEEee---eeccccchHH--HHHHHHHHHHHHHHh
Confidence 34567888888865 4445666665 566666666665544
No 24
>d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}
Probab=48.93 E-value=1.4 Score=28.74 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=13.4
Q ss_pred ccCCccCHHHHhhcCCCCCc
Q psy4335 8 RDGKIQSLEQIYLFSLPIKE 27 (152)
Q Consensus 8 k~~~i~~~~~~~~~~l~i~e 27 (152)
+.+||+++ |++..++|++.
T Consensus 1 rm~kI~~i-e~~~~~~Pl~~ 19 (127)
T d1r0ma2 1 RMFKIEAA-EIVVARLPLKF 19 (127)
T ss_dssp CCEECCEE-EEEEEEEEBC-
T ss_pred CCceEEEE-EEEEEeecccC
Confidence 45788888 47877778653
No 25
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.16 E-value=16 Score=22.44 Aligned_cols=41 Identities=24% Similarity=0.177 Sum_probs=26.8
Q ss_pred CeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcce
Q psy4335 56 GQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVV 100 (152)
Q Consensus 56 Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli 100 (152)
|....|.+-|.++|. .+|.|.|+++ ..|=+.|-..|-..|+
T Consensus 36 g~~~~F~~~v~i~g~--~~~~g~G~sK--K~Aeq~AA~~AL~~L~ 76 (85)
T d1x47a1 36 NPSEPFGASVTIDGV--TYGSGTASSK--KLAKNKAARATLEILI 76 (85)
T ss_dssp SSSCCEEEEEEETTE--EEEEEEESSH--HHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEEECCE--EEecCCcchH--HHHHHHHHHHHHHHHH
Confidence 334458888888652 3477777766 5677777777766554
No 26
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.98 E-value=36 Score=20.53 Aligned_cols=42 Identities=19% Similarity=0.031 Sum_probs=25.3
Q ss_pred CCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 55 AGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 55 ~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
++...+|.+.+++.|+ ..+|.|.|.++- .|=+.|-..|..|+
T Consensus 32 ~~~~~~f~v~~~v~~~-~~~~~g~g~SKK--~AEq~AA~~aL~~~ 73 (81)
T d1t4oa_ 32 TAVDPNSIVECRVGDG-TVLGTGVGRNIK--IAGIRAAENALRDK 73 (81)
T ss_dssp CSSCCCEEEEEECTTC-CEEEEEEESSHH--HHHHHHHHHHHHCH
T ss_pred CCCCCCEEEEEEEecC-ceEEecccchhh--HHHHHHHHHHHHhc
Confidence 3444456666776653 366777777764 55566666665543
No 27
>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=37.31 E-value=11 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHhhcceeee
Q psy4335 82 KEVATAIRGAIILAKLSVVPVR 103 (152)
Q Consensus 82 ~ev~~Ai~kA~~~Ak~nli~v~ 103 (152)
....+|++.|+..|.+.+.-++
T Consensus 13 ~S~edAi~~Ai~~AskTl~ni~ 34 (64)
T d2cc6a1 13 ESFTAAADDAIDRAEDTLDNVV 34 (64)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEE
T ss_pred CCHHHHHHHHHHHHhhCccCce
Confidence 3488999999999998775554
No 28
>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431 {Thermus thermophilus [TaxId: 274]}
Probab=36.82 E-value=12 Score=22.91 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHhhcceeeee
Q psy4335 82 KEVATAIRGAIILAKLSVVPVRR 104 (152)
Q Consensus 82 ~ev~~Ai~kA~~~Ak~nli~v~r 104 (152)
....+|++.|+..|.+.|.-++-
T Consensus 15 ~S~edAi~~Ai~~AskTl~ni~~ 37 (66)
T d2ux9a1 15 EGLEAAIQAALARARKTLRHLDW 37 (66)
T ss_dssp SCHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCHHHHHHHHHHHhhhCccCcEE
Confidence 34889999999999987765543
No 29
>d1bf4a_ b.34.13.1 (A:) DNA-binding protein {Archaeon Sulfolobus solfataricus, Sso7d [TaxId: 2287]}
Probab=34.00 E-value=16 Score=21.72 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=33.0
Q ss_pred cceeEEEeeeeeeecCCeeEEEEEEEEecCCCceEEeeeecchhHHH
Q psy4335 40 KDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVAT 86 (152)
Q Consensus 40 ~~~vl~i~rV~k~tk~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~ 86 (152)
+|+-+++..+.|+.+-|+..||.. -|+||.-|-|--.-++.+.
T Consensus 10 eekevd~skikkvwrvgkmvsfty----d~g~gktgrgavsekdapk 52 (63)
T d1bf4a_ 10 EEKEVDISKIKKVWRVGKMISFTY----DEGGGKTGRGAVSEKDAPK 52 (63)
T ss_dssp EEEEEEGGGEEEEEEETTEEEEEE----ECGGGCEEEEEEETTTCCH
T ss_pred ccccccHHHHHHHHhhcceEEEEE----ecCCCcccccccccccChH
Confidence 456677778888888899999975 6789999888766666443
No 30
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.87 E-value=33 Score=20.91 Aligned_cols=40 Identities=25% Similarity=0.120 Sum_probs=26.3
Q ss_pred CeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 56 GQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 56 Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
.....|.+-|.+++.. +|-|.|+++ ..|=+.|-..|...|
T Consensus 35 ~h~~~F~~~v~v~g~~--~~~g~g~sK--K~Aeq~AA~~aL~~L 74 (85)
T d1x49a1 35 PHDRRFTFQVLIDEKE--FPEAKGRSK--QEARNAAAKLAVDIL 74 (85)
T ss_dssp SSSCEEEEEEEESSCC--CCCEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEecCceE--eeccccccH--HHHHHHHHHHHHHHH
Confidence 4456899999998743 456666665 466666666665544
No 31
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.54 E-value=50 Score=20.76 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=25.2
Q ss_pred CeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 56 GQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 56 Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....+|.+-|.|-| .-++|.|.|+++. .|=+.|-..|...|
T Consensus 33 ~h~~~F~~~v~v~g-~~~~~~g~g~sKK--~AEq~AA~~al~~L 73 (99)
T d1whqa_ 33 KNRQKFMCEVRVEG-FNYAGMGNSTNKK--DAQSNAARDFVNYL 73 (99)
T ss_dssp SSSEEEEEEEECTT-CSCCEEEEESSHH--HHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEecc-ccceeccCCccHH--HHHHHHHHHHHHHH
Confidence 34467888888854 3456777777763 45555555555444
No 32
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.71 E-value=37 Score=20.33 Aligned_cols=40 Identities=25% Similarity=0.186 Sum_probs=26.5
Q ss_pred CeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 56 GQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 56 Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
....+|.+-|+|+|.. +|-|.|+++ ..|=+.|-..|-..|
T Consensus 26 ~h~~~F~~~v~v~~~~--~~~g~G~sK--K~Aeq~AA~~Al~~L 65 (76)
T d1x48a1 26 ELPQRFICKCKIGQTM--YGTGSGVTK--QEAKQLAAKEAYQKL 65 (76)
T ss_dssp SSSCCEEEEEEESSCE--EEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEECCEE--eCCcCccHH--HHHHHHHHHHHHHHH
Confidence 3445788889997743 466777665 566667766665544
No 33
>d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]}
Probab=28.43 E-value=6.4 Score=24.92 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=14.6
Q ss_pred EEEEEecCCCceEEeeeecc
Q psy4335 62 KAFVAIGDSNGHIGLGVKCS 81 (152)
Q Consensus 62 ~alVvvGn~nG~vG~G~gks 81 (152)
.++|-+=+.+|.+|+|...+
T Consensus 31 ~~iV~i~td~G~~G~Ge~~~ 50 (127)
T d1muca2 31 LVVLRVRCSDGVEGIGEATT 50 (127)
T ss_dssp EEEEEEEETTSCEEEEEEEC
T ss_pred EEEEEEEeCCCcEEEEEeec
Confidence 45566666699999998754
No 34
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}
Probab=27.65 E-value=16 Score=24.42 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=17.7
Q ss_pred CceEEeeeecchh-HHHHHHHHHHHH
Q psy4335 71 NGHIGLGVKCSKE-VATAIRGAIILA 95 (152)
Q Consensus 71 nG~vG~G~gks~e-v~~Ai~kA~~~A 95 (152)
..++|+|.+.+.+ +..|+++|+...
T Consensus 20 ~A~iG~G~a~G~~ra~~Av~~Al~sP 45 (121)
T d1w5fa2 20 AAILGIGVGKGEHRAREAAKKAMESK 45 (121)
T ss_dssp EEEEEEEEEESTTHHHHHHHHHHTCT
T ss_pred eEEEEEEEeCCCchHHHHHHHHHhCc
Confidence 4578999998876 666777766543
No 35
>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.65 E-value=1e+02 Score=21.64 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=37.4
Q ss_pred CCchhhhhccc---C-CCccceeEEEeeeeeeecCCeeE-EEEEEE--EecCCC--ceEEeeeec-----chhHHHHHHH
Q psy4335 25 IKEFEIIDFFI---G-SSLKDEVLKIMPVQKQTRAGQRT-RFKAFV--AIGDSN--GHIGLGVKC-----SKEVATAIRG 90 (152)
Q Consensus 25 i~e~eiid~~~---~-~~l~~~vl~i~rV~k~tk~Gr~~-rf~alV--vvGn~n--G~vG~G~gk-----s~ev~~Ai~k 90 (152)
|.-..+|+.+. | ..|..+|+.+.....-...|+.. .+.|.| .+.|+. .-+|+|... +.....|.+.
T Consensus 42 I~~~~vi~~aNeVFGfdGWs~~i~~~~~d~~d~~~~~~~v~v~a~VrvtlkDGt~~e~~G~G~~~~~~~k~~a~~~a~Ke 121 (184)
T d1kn0a_ 42 IEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKE 121 (184)
T ss_dssp ECHHHHHHHHHHHHCTTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTSCEEEEEEEEEECSCSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCceeEEEEEEeecccccCCceeEEEEEEEEEEEECCEEEeccccccccCccchhhhHHHHHHH
Confidence 34445555442 4 35888888886655545555432 333333 344543 235666433 2223456666
Q ss_pred HHHHHhh
Q psy4335 91 AIILAKL 97 (152)
Q Consensus 91 A~~~Ak~ 97 (152)
|+..|.+
T Consensus 122 A~TDAlK 128 (184)
T d1kn0a_ 122 AVTDGLK 128 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 36
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.16 E-value=63 Score=18.96 Aligned_cols=38 Identities=24% Similarity=-0.005 Sum_probs=23.7
Q ss_pred eEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcce
Q psy4335 58 RTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVV 100 (152)
Q Consensus 58 ~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli 100 (152)
...|.+.|.|+|.. -.|.|+|+ ..|-+.|-..|.++++
T Consensus 33 ~~~F~~~v~v~~~~---~~g~G~SK--K~Aeq~AA~~aL~~l~ 70 (73)
T d2b7ta1 33 APLFVMSVEVNGQV---FEGSGPTK--KKAKLHAAEKALRSFV 70 (73)
T ss_dssp SCEEEEEEESSSSE---EEEEESSH--HHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCEE---EEcCCCcH--HHHHHHHHHHHHHHHh
Confidence 34588888886532 24555555 5667777777766553
No 37
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.15 E-value=26 Score=21.73 Aligned_cols=41 Identities=27% Similarity=0.158 Sum_probs=25.9
Q ss_pred CCeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 55 AGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 55 ~Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
-.....|.+-|.++|.. ++.|.|+++ ..|-+.|-..|...|
T Consensus 40 p~h~~~F~v~v~v~~~~--~~~g~G~sK--K~Aeq~AA~~aL~~L 80 (90)
T d1qu6a1 40 PPHDRRFTFQVIIDGRE--FPEGEGRSK--KEAKNAAAKLAVEIL 80 (90)
T ss_dssp TTTBCCEEEEEESSSSC--CCEEECCSS--HHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEEECcee--eeccCCCcH--HHHHHHHHHHHHHHH
Confidence 34566899999997743 355666655 456666666665433
No 38
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.24 E-value=52 Score=19.31 Aligned_cols=39 Identities=21% Similarity=0.074 Sum_probs=24.9
Q ss_pred eeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcce
Q psy4335 57 QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSVV 100 (152)
Q Consensus 57 r~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nli 100 (152)
....|.+-|.|++.. . .|.|+|+ ..|-+.|-..|...|+
T Consensus 29 h~~~F~~~v~v~~~~-~--~g~G~SK--K~Ak~~AA~~aL~~L~ 67 (71)
T d2b7va1 29 HAKSFVMSVVVDGQF-F--EGSGRNK--KLAKARAAQSALATVF 67 (71)
T ss_dssp TTCCEEEEEECSSCE-E--EEEESSH--HHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCEE-E--EecCCCH--HHHHHHHHHHHHHHHH
Confidence 345688888887653 2 5566665 4677777777665443
No 39
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.80 E-value=81 Score=19.02 Aligned_cols=39 Identities=15% Similarity=-0.026 Sum_probs=25.2
Q ss_pred CeeEEEEEEEEecCCCceEEeeeecchhHHHHHHHHHHHHhhcc
Q psy4335 56 GQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLSV 99 (152)
Q Consensus 56 Gr~~rf~alVvvGn~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl 99 (152)
.....|.+-|.+++ ....|.|+|+ ..|=+.|-..|...|
T Consensus 36 ~h~~~F~~~v~v~g---~~~~g~G~SK--K~Aeq~AA~~aL~~L 74 (84)
T d2dmya1 36 VHAPVFTMSVDVDG---TTYEASGPSK--KTAKLHVAVKVLQAM 74 (84)
T ss_dssp SSSCEEEEEEEETT---EEEEEEESSH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECC---EEEEcCCCCH--HHHHHHHHHHHHHHh
Confidence 44567888888865 3445666665 567777767666544
No 40
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=21.51 E-value=20 Score=27.27 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=37.3
Q ss_pred CCceEEeeeecchhHHHHHHHHHHHHhhcc---eeeeecccCCcCCCCceeeeeeeee--e---EEEeecCCC
Q psy4335 70 SNGHIGLGVKCSKEVATAIRGAIILAKLSV---VPVRRGYWGNKIGKPHTVPCKRLTH--G---DQQIPGGRK 134 (152)
Q Consensus 70 ~nG~vG~G~gks~ev~~Ai~kA~~~Ak~nl---i~v~rgy~~~~~~~~hTI~~~v~gk--g---V~l~Pap~G 134 (152)
.+.+|+|-+|||=.+..|+.+|-.--+ |+ .-|+- |. .+|+|.-.|. | |-|+|-|+.
T Consensus 108 ~dD~V~F~iGCSFSFE~AL~~aGip~r-hi~~~~nVpM-Y~-------Tni~c~paG~F~g~mVVSMRp~~~~ 171 (256)
T d2pifa1 108 HDDMVAFLIGCSFTFETPLQEAGIEVR-HITDGCNVPM-YR-------TNRACRPAGRLHGEMVVSMRPIPAD 171 (256)
T ss_dssp CSSEEEEEECCSCCSHHHHHHHTCCCH-HHHTTCCCCE-EE-------EEEECCCBTTBCCEEEEEEEEEEGG
T ss_pred cCCEEEEEeccccchHHHHHHCCCCch-hcccCCccce-ee-------cccccccCCCcCCceEEEEEecCHH
Confidence 468899999999998887766632211 11 12222 31 4788887787 4 899998764
No 41
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.16 E-value=27 Score=23.04 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=17.7
Q ss_pred CceEEeeeecchh-HHHHHHHHHHHH
Q psy4335 71 NGHIGLGVKCSKE-VATAIRGAIILA 95 (152)
Q Consensus 71 nG~vG~G~gks~e-v~~Ai~kA~~~A 95 (152)
..++|+|.+.+.+ +..|++.|+...
T Consensus 17 ~a~~giG~a~g~~ra~~Av~~Al~sp 42 (123)
T d2vapa2 17 LAMIGIGESDSEKRAKEAVSMALNSP 42 (123)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHTCT
T ss_pred eEEEEeeccCCCchHHHHHHHHHhCc
Confidence 4578999888866 666777776543
Done!