RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4335
         (152 letters)



>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 74

 Score =  103 bits (258), Expect = 2e-30
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 39  LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLS 98
           L++ V+ +  V K  + G+R RF A V +GD NGH+G G   ++EV  AIR AI  AK +
Sbjct: 8   LEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKN 67

Query: 99  VVPV 102
           ++ V
Sbjct: 68  LIEV 71


>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 69

 Score =  101 bits (254), Expect = 6e-30
 Identities = 19/67 (28%), Positives = 37/67 (55%)

Query: 39  LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLS 98
           L+++++ +  V K  + G+   F A   +GD NG +G G   ++EV  AI+ A+  A+ +
Sbjct: 2   LQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRN 61

Query: 99  VVPVRRG 105
           ++ V   
Sbjct: 62  MINVALN 68


>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 69

 Score = 98.9 bits (247), Expect = 6e-29
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 39  LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIRGAIILAKLS 98
            +++++ I    +    G+R RF A V +GD  G +GLG   + EV  A++ A   A+ +
Sbjct: 2   FEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRN 61

Query: 99  VVPV 102
           +V V
Sbjct: 62  MVEV 65


>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR
          {Escherichia coli [TaxId: 562]}
          Length = 118

 Score = 24.5 bits (53), Expect = 4.8
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 62 KAFVAIGDSNGHIGLGVKCSKEVATAIR 89
            F  + +      + +K S E+A  +R
Sbjct: 34 VLFAMVKEVENRPAVSLKTSPELAELLR 61


>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
           {Crithidia fasciculata [TaxId: 5656]}
          Length = 240

 Score = 24.1 bits (51), Expect = 8.6
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 57  QRTRFKAFVAIGDSNGHIGLGVKCSKEVATAIR 89
            +T      AIGD    + L      E A  + 
Sbjct: 197 SKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVD 229


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0743    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 560,153
Number of extensions: 24535
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 7
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.6 bits)