BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4337
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
PE=1 SV=1
Length = 751
Score = 114 bits (284), Expect = 4e-25, Method: Composition-based stats.
Identities = 62/92 (67%), Positives = 80/92 (86%), Gaps = 1/92 (1%)
Query: 48 LDQFESEIESLLV-GKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
+DQFESE+ESL V +KK+ DKDKQDR++ LK +E+HRYH+R LET+LRMLDN S+ VD
Sbjct: 139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198
Query: 107 QIRRIKDDVEYYIESSQDIDFEENEYIYDDIE 138
IR+IKDDVEYY++SSQD DFEENE++YDD++
Sbjct: 199 AIRKIKDDVEYYVDSSQDPDFEENEFLYDDLD 230
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
PE=1 SV=1
Length = 753
Score = 113 bits (282), Expect = 7e-25, Method: Composition-based stats.
Identities = 62/92 (67%), Positives = 80/92 (86%), Gaps = 1/92 (1%)
Query: 48 LDQFESEIESLLV-GKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
+DQFESE+ESL V +KK+ DKDKQDR++ LK +E+HRYH+R LET+LRMLDN S+ VD
Sbjct: 139 VDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVD 198
Query: 107 QIRRIKDDVEYYIESSQDIDFEENEYIYDDIE 138
IR+IKDDVEYY++SSQD DFEENE++YDD++
Sbjct: 199 AIRKIKDDVEYYVDSSQDPDFEENEFLYDDLD 230
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not3 PE=1 SV=2
Length = 640
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 52 ESEIESLLVG-KKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRR 110
E+E ESL K+ + D K + EL++++ERH++H KLE ++R L+N + + +
Sbjct: 142 EAEAESLKATFKRGKKDLSKLSHLSELESRIERHKWHQDKLELIMRRLENSQISPEAVND 201
Query: 111 IKDDVEYYIESSQDIDFEENEYIYDDI 137
I++D+ YY+E SQ DF E+E +YD++
Sbjct: 202 IQEDIMYYVECSQSEDFAEDENLYDEL 228
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT3 PE=1 SV=2
Length = 836
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 40/55 (72%)
Query: 83 RHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDI 137
R+R+H +++E LR+L N ++ ++ ++DD+ Y++ES+QD DF E+E IYD +
Sbjct: 176 RYRWHQQQMELALRLLANEELDPQDVKNVQDDINYFVESNQDPDFVEDETIYDGL 230
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT5 PE=1 SV=1
Length = 560
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 80 KVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDI 137
+ ERH +HI LE +L+ L N ++ + + +DD++YY+E++ D DF E + IY+D+
Sbjct: 153 QTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEYDTIYEDM 210
>sp|Q5DU05|CE164_MOUSE Centrosomal protein of 164 kDa OS=Mus musculus GN=Cep164 PE=2 SV=2
Length = 1446
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 IDDLDQFESEIESLLVGKKKRLDKDKQDRMDELKAK------VERHRYHIRKLETLLRML 98
+ + ++E E+ SLL K++ ++++ + +MD++K + R RY + + +L
Sbjct: 813 VHQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRADLL 872
Query: 99 DNMSVEVDQIRRIKDDVEYYIESSQDIDFEE 129
+++ E++++RR + + QD E+
Sbjct: 873 GHLTGELERLRRAHERELESMRQEQDQQLED 903
>sp|Q54DH8|TAF1_DICDI Transcription initiation factor TFIID subunit 1 OS=Dictyostelium
discoideum GN=taf1 PE=3 SV=1
Length = 2310
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 35/55 (63%)
Query: 119 IESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDFEENEYIYDDIEDECFIAVFI 173
++ S ++D EEN+ ++ D++ D+E + +SSQ I F++ I +D ++ +V +
Sbjct: 19 VKESGELDVEENDQVFKDLKKDLELFAKSSQHISFKKTIGIDEDDKNAVTDSVIV 73
>sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm OS=Chlamydomonas
reinhardtii GN=ODA2 PE=1 SV=1
Length = 4485
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 79 AKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIE 138
+ +E+H HI L+T+L+ L+N+ +D ++R D+ Y ++ D DF E +D+E
Sbjct: 441 SSLEQHT-HIEGLDTMLKSLNNI---IDDVKRKPYDLLDYSRNAFDTDFLEFNVQINDLE 496
Query: 139 DDVEYYIESS 148
++ ++ +S
Sbjct: 497 LQLQGFVNAS 506
>sp|Q21653|YNG2_CAEEL Uncharacterized protein R02F2.2 OS=Caenorhabditis elegans
GN=R02F2.2/R02F2.3 PE=4 SV=4
Length = 1182
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 40 VPTIVIDDLDQFESEIESLLVGKKKRLD-KDKQDRMDELKAKVERHRYHIRKLETLLRML 98
+P+I ++ L + I + + R++ + D E+ ++E + + +++L R+L
Sbjct: 95 MPSIDVEALQKLLLSIPKFVSASRNRINQRHDSDSGGEMTTEIEELKDAAKSIQSLQRVL 154
Query: 99 ---DNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIE 138
S + RR+ D VE +ESS D +E+ D IE
Sbjct: 155 AYPSQTSSDRGGNRRLADPVESCLESSVFSDVDESSLATDTIE 197
>sp|Q2FS27|SYS_METHJ Serine--tRNA ligase OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=serS PE=3 SV=1
Length = 425
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 63 KKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESS 122
KKR D +K +D+L + RHR I + L R +++S ++++ ++ +D I +
Sbjct: 19 KKRNDMEKLAWIDDLLVQDIRHRELIGQTNELRRRRNSISYDINRAKKAGEDASALIAEA 78
Query: 123 QDID--FEENEYIYDDIEDDVEYYIESSQDIDFEENEYIYDDIED 165
+ +ENE ++I + YY+ +I E DD ++
Sbjct: 79 AGLPGRIKENEAEMEEISKKIRYYLMRIPNILHESVPVGADDTQN 123
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 113 DDVEYYIESSQDIDFEENEYIY-DDIEDDVEYYIESSQDIDFE 154
+D Y IES +D++ E +++ +D E+D Y IES +D++ E
Sbjct: 432 NDTSYVIESDEDLEMEMLKHLSPNDNENDTSYVIESDEDLEME 474
>sp|Q1ACM9|ATPF_CHAVU ATP synthase subunit b, chloroplastic OS=Chara vulgaris GN=atpF
PE=3 SV=1
Length = 186
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 18 SKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIESLLVGKKKRLDKDKQDRMDEL 77
SK P + +QFG D LE +VI L F +E+ S L+ K+K + ++ +
Sbjct: 12 SKWP-LASQFGFNLDILETNLINLGVVIGTLLYFGNEVISNLLNKRKEII------LNSI 64
Query: 78 KAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDI 137
+ +R+ KL+ R L+ + ++IR I+ S I+ E+ E IY
Sbjct: 65 RDAEQRYEDATEKLKQANRDLEKAKFKANEIR---------IQGSTQIEIEKKELIYAAD 115
Query: 138 EDDVEYYIESSQDI 151
D ++E S++I
Sbjct: 116 RDS--KHLEESKNI 127
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 29 DRTDALEGRKFVPTIVIDDLDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHI 88
D +DAL ++++ I +L++ E E+ +++ +DKD + D KAK R R
Sbjct: 1320 DYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPV-KEDVEKAKKRRGRPPA 1378
Query: 89 RKL---------------ETLLRMLDNMSVEVD----QIRRIKDDVEYYIESSQDIDFEE 129
KL +T++ D+ ++ Q+ KD EYY + +DF++
Sbjct: 1379 EKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKDLPEYYELIRKPVDFKK 1438
Query: 130 -NEYIYD-------DIEDDVEYYIESSQDIDFEENEYIYDD 162
E I + D+E DV ++Q + E ++ IY+D
Sbjct: 1439 IKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQ-IYED 1478
>sp|O59757|SPC7_SCHPO Kinetochore protein spc7 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=spc7 PE=1 SV=1
Length = 1364
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 71 QDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEEN 130
Q+++++LK +VER R + + E + L +++++Q+ D+E + QD +
Sbjct: 1079 QEKLEKLKVEVERRRRLLSEKEERRKEL---AIKIEQVTNSCSDLELRTNAEQDFYAKNQ 1135
Query: 131 EYIYDDIE 138
++ +D+I+
Sbjct: 1136 DFEFDEIK 1143
>sp|P12844|MYO3_CAEEL Myosin-3 OS=Caenorhabditis elegans GN=myo-3 PE=2 SV=1
Length = 1969
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 85 RYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYY 144
R H R LE++ L+ + + ++ RIK +E I + +I + Y D + ++ Y
Sbjct: 1601 RNHQRALESMQATLEAETKQKEEALRIKKKLESDI-NDLEIALDHANRAYADAQKTIKKY 1659
Query: 145 IESSQDIDF--EENEYIYDDIEDECFIA 170
+E+ Q++ F EE + D+I ++ F+A
Sbjct: 1660 METVQELQFQIEEEQRQKDEIREQ-FLA 1686
>sp|A3LRM6|SNU71_PICST U1 small nuclear ribonucleoprotein component SNU71
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=SNU71 PE=3 SV=2
Length = 579
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 35 EGRKFVPTIVIDDLDQF-ESEIESLL-VGKKKRLDKDKQDRMDELKAKVERHR-YHIRKL 91
E K +P+ ++++ D + E E LL G+KK+LDK QD+ +L++ R R Y +KL
Sbjct: 330 ETTKDLPSNIVNEYDDLSDDEYEELLKTGEKKKLDKLYQDKSHQLQSLETRERLYLTKKL 389
Query: 92 ETL 94
E L
Sbjct: 390 EDL 392
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.139 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,424,456
Number of Sequences: 539616
Number of extensions: 2809225
Number of successful extensions: 16677
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 389
Number of HSP's that attempted gapping in prelim test: 16083
Number of HSP's gapped (non-prelim): 929
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)