Query psy4337
Match_columns 174
No_of_seqs 129 out of 232
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:01:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04065 Not3: Not1 N-terminal 100.0 2.7E-37 5.8E-42 260.3 9.9 131 12-142 97-233 (233)
2 KOG2150|consensus 99.9 3.1E-25 6.8E-30 204.4 6.8 122 11-153 96-222 (575)
3 COG5665 NOT5 CCR4-NOT transcri 99.9 3E-22 6.4E-27 178.6 7.7 107 12-139 87-198 (548)
4 KOG3160|consensus 95.8 0.0038 8.3E-08 52.8 1.2 42 1-42 140-182 (220)
5 PF04065 Not3: Not1 N-terminal 95.8 0.018 3.9E-07 49.2 5.1 92 74-166 124-231 (233)
6 PF11123 DNA_Packaging_2: DNA 92.4 0.83 1.8E-05 33.0 6.9 74 45-130 4-80 (82)
7 PHA00425 DNA packaging protein 90.1 1.7 3.7E-05 31.8 6.6 64 49-124 11-76 (88)
8 PF03962 Mnd1: Mnd1 family; I 80.6 15 0.00032 30.2 8.6 112 4-121 24-150 (188)
9 KOG2150|consensus 71.0 3.7 8.1E-05 39.4 2.9 28 140-167 183-210 (575)
10 PF02609 Exonuc_VII_S: Exonucl 60.7 13 0.00027 24.3 3.2 32 86-117 3-35 (53)
11 PF03357 Snf7: Snf7; InterPro 58.7 41 0.0009 25.7 6.3 29 95-124 94-122 (171)
12 cd07909 YciF YciF bacterial st 57.1 56 0.0012 25.9 6.9 52 73-124 34-87 (147)
13 PF01544 CorA: CorA-like Mg2+ 56.8 68 0.0015 26.4 7.7 71 49-120 128-206 (292)
14 cd07631 BAR_APPL1 The Bin/Amph 55.0 39 0.00085 28.7 5.9 84 34-121 93-187 (215)
15 PRK10947 global DNA-binding tr 46.4 73 0.0016 25.0 5.9 53 49-109 24-76 (135)
16 COG4911 Uncharacterized conser 45.5 34 0.00073 26.5 3.7 60 38-105 17-77 (123)
17 PRK10328 DNA binding protein, 45.5 1E+02 0.0023 24.1 6.6 53 49-109 24-76 (134)
18 cd07632 BAR_APPL2 The Bin/Amph 45.5 82 0.0018 26.8 6.4 62 34-96 93-165 (215)
19 cd07602 BAR_RhoGAP_OPHN1-like 45.2 76 0.0017 26.7 6.2 81 36-121 97-188 (207)
20 PTZ00446 vacuolar sorting prot 45.1 38 0.00083 28.2 4.3 23 100-122 124-146 (191)
21 cd07978 TAF13 The TATA Binding 44.9 85 0.0018 22.9 5.7 72 20-97 8-80 (92)
22 PF09210 DUF1957: Domain of un 42.4 50 0.0011 24.7 4.2 35 78-112 54-88 (102)
23 TIGR01280 xseB exodeoxyribonuc 41.9 35 0.00076 23.5 3.1 34 87-120 6-40 (67)
24 PRK00977 exodeoxyribonuclease 40.7 47 0.001 23.7 3.7 33 87-119 15-48 (80)
25 cd07635 BAR_GRAF2 The Bin/Amph 40.5 98 0.0021 26.1 6.1 82 35-121 96-188 (207)
26 PF04568 IATP: Mitochondrial A 39.0 59 0.0013 24.4 4.1 24 72-95 72-99 (100)
27 PRK14066 exodeoxyribonuclease 38.8 41 0.00089 23.8 3.1 32 87-118 9-41 (75)
28 cd07637 BAR_ACAP3 The Bin/Amph 37.4 1E+02 0.0023 25.5 5.8 79 36-120 91-180 (200)
29 COG5509 Uncharacterized small 36.9 28 0.00061 24.1 1.9 19 49-67 35-54 (65)
30 cd07601 BAR_APPL The Bin/Amphi 36.8 1.1E+02 0.0024 25.8 5.9 67 50-120 120-186 (215)
31 PRK07639 acyl carrier protein; 35.6 48 0.001 23.6 3.1 38 109-146 8-45 (86)
32 PF05974 DUF892: Domain of unk 34.6 1.2E+02 0.0027 23.8 5.6 46 76-121 39-86 (159)
33 PRK14064 exodeoxyribonuclease 34.4 46 0.001 23.5 2.8 22 87-108 11-32 (75)
34 PRK14069 exodeoxyribonuclease 32.8 56 0.0012 24.4 3.1 22 88-109 14-35 (95)
35 PRK14067 exodeoxyribonuclease 32.1 60 0.0013 23.3 3.1 22 87-108 12-33 (80)
36 PRK14063 exodeoxyribonuclease 31.7 54 0.0012 23.2 2.8 23 87-109 10-32 (76)
37 COG3074 Uncharacterized protei 31.4 1.8E+02 0.0038 20.9 5.3 18 41-58 13-30 (79)
38 PF10805 DUF2730: Protein of u 30.4 2E+02 0.0044 21.2 5.9 87 7-98 7-98 (106)
39 COG1722 XseB Exonuclease VII s 30.2 1.2E+02 0.0026 21.8 4.4 35 87-121 15-50 (81)
40 PRK14068 exodeoxyribonuclease 30.1 69 0.0015 22.7 3.1 22 87-108 11-32 (76)
41 PRK14070 exodeoxyribonuclease 29.8 54 0.0012 22.9 2.5 21 89-109 2-22 (69)
42 cd07638 BAR_ACAP2 The Bin/Amph 29.4 1.6E+02 0.0034 24.6 5.6 83 36-121 91-181 (200)
43 PF10779 XhlA: Haemolysin XhlA 29.3 1.3E+02 0.0028 20.6 4.4 46 71-116 5-51 (71)
44 PF02269 TFIID-18kDa: Transcri 28.3 33 0.00071 25.0 1.2 74 19-97 6-80 (93)
45 PF09537 DUF2383: Domain of un 28.1 1.1E+02 0.0023 22.1 4.0 28 72-99 31-58 (111)
46 cd07603 BAR_ACAPs The Bin/Amph 27.3 1.8E+02 0.0038 24.1 5.6 59 36-97 91-160 (200)
47 PRK10698 phage shock protein P 27.2 2.4E+02 0.0052 23.6 6.4 29 9-37 4-32 (222)
48 KOG0964|consensus 26.9 93 0.002 32.3 4.4 53 49-101 716-770 (1200)
49 cd07606 BAR_SFC_plant The Bin/ 25.8 2.3E+02 0.0049 23.6 6.0 41 77-120 143-183 (202)
50 PRK09458 pspB phage shock prot 25.8 2.3E+02 0.0051 20.3 5.2 25 71-95 41-65 (75)
51 KOG1656|consensus 25.5 1.8E+02 0.0038 24.9 5.2 74 37-110 22-106 (221)
52 KOG2911|consensus 25.4 3.5E+02 0.0076 25.5 7.5 62 41-102 238-310 (439)
53 COG1561 Uncharacterized stress 24.8 2.8E+02 0.006 24.7 6.6 103 4-108 77-204 (290)
54 cd00238 ERp29c ERp29 and ERp38 24.7 1.5E+02 0.0033 21.5 4.2 39 75-113 46-85 (93)
55 PTZ00464 SNF-7-like protein; P 24.6 3E+02 0.0064 23.1 6.5 24 100-123 118-141 (211)
56 PF10925 DUF2680: Protein of u 24.3 1.3E+02 0.0028 20.3 3.5 35 93-127 23-57 (59)
57 PF07106 TBPIP: Tat binding pr 23.4 3.7E+02 0.0079 21.0 8.4 48 73-120 110-159 (169)
58 cd07634 BAR_GAP10-like The Bin 22.8 2.8E+02 0.006 23.4 5.9 68 49-121 121-188 (207)
59 PF06667 PspB: Phage shock pro 22.5 2.7E+02 0.0058 19.8 5.0 26 70-95 40-65 (75)
60 cd07666 BAR_SNX7 The Bin/Amphi 22.0 1.8E+02 0.0039 25.0 4.7 66 49-122 159-226 (243)
61 COG5665 NOT5 CCR4-NOT transcri 21.6 38 0.00083 31.6 0.6 28 139-166 172-199 (548)
62 cd07636 BAR_GRAF The Bin/Amphi 21.2 2.9E+02 0.0063 23.2 5.8 79 35-121 96-188 (207)
63 COG3685 Uncharacterized protei 21.1 2.5E+02 0.0054 23.1 5.1 45 75-124 42-86 (167)
64 COG4026 Uncharacterized protei 20.8 2.8E+02 0.0061 24.2 5.6 41 70-116 161-201 (290)
65 PF11262 Tho2: Transcription f 20.6 1.4E+02 0.0031 26.0 4.0 29 71-99 59-87 (298)
66 PF05783 DLIC: Dynein light in 20.5 1.9E+02 0.0041 27.2 4.9 44 72-125 115-158 (472)
No 1
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=2.7e-37 Score=260.35 Aligned_cols=131 Identities=45% Similarity=0.672 Sum_probs=118.9
Q ss_pred HHHhhhc-chhhHHHhcCCchhhhhccCcchhhHHHHH----HhhhHHHHHH-hhccCCCCCCchhhhHHHHHHHHHHhH
Q psy4337 12 LQTCVKS-KGPEILAQFGDRTDALEGRKFVPTIVIDDL----DQFESEIESL-LVGKKKRLDKDKQDRMDELKAKVERHR 85 (174)
Q Consensus 12 i~~C~~s-~G~eLLak~gd~T~al~e~~~wL~~~Id~L----e~~EaEvEsL-~~~kKkK~~~~~~~r~~~l~~~ierhk 85 (174)
.++.++| .|....++++|.++++.+++.||+++|++| |++|+|+|+| +++||||+++.+++|+++++.+++||+
T Consensus 97 sKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk 176 (233)
T PF04065_consen 97 SKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHK 176 (233)
T ss_pred hcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHH
Confidence 3566777 465555667899999999999999999999 9999999999 566666677778999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCCCCCccccccccccCcchh
Q psy4337 86 YHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVE 142 (174)
Q Consensus 86 ~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd~df~ede~iYd~L~Lde~ 142 (174)
|||.+||+|||+|+|+.|+|++|++|||||+|||++|++|||+++++|||+|+|++.
T Consensus 177 ~Hi~kLE~lLR~L~N~~l~~e~V~~ikedieyYve~n~d~Df~ede~iYddl~Ldee 233 (233)
T PF04065_consen 177 FHIEKLELLLRLLDNDELDPEQVEDIKEDIEYYVESNQDPDFEEDEDIYDDLNLDEE 233 (233)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCCcccchHhHhhccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999863
No 2
>KOG2150|consensus
Probab=99.91 E-value=3.1e-25 Score=204.35 Aligned_cols=122 Identities=34% Similarity=0.506 Sum_probs=110.4
Q ss_pred hHHHhhhcc-hhhHHHhcCCchhhhhccCcchhhHHHHH----HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhH
Q psy4337 11 KLQTCVKSK-GPEILAQFGDRTDALEGRKFVPTIVIDDL----DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHR 85 (174)
Q Consensus 11 ~i~~C~~s~-G~eLLak~gd~T~al~e~~~wL~~~Id~L----e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk 85 (174)
.+++.++|+ |.-...+.+++++++.++.+||+++|++| |+||+ ++++++++||+
T Consensus 96 e~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea---------------------~~~e~~~erh~ 154 (575)
T KOG2150|consen 96 EMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEA---------------------EELERFIERHR 154 (575)
T ss_pred HhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 456777874 55555567899999999999999999999 66666 77999999999
Q ss_pred HHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCCCCCccccccccccCcchhhhhhcccCCCc
Q psy4337 86 YHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDF 153 (174)
Q Consensus 86 ~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd~df~ede~iYd~L~Lde~~~~~~~~~~~~ 153 (174)
|||.+||++||+|+|+.++|+.|++++|||.|||++||+|||.+++.+|++|+|++.........+.+
T Consensus 155 ~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqdpdF~e~e~iYd~l~le~~e~~~~~~~~~~ 222 (575)
T KOG2150|consen 155 WHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQDPDFLEDETIYDDLNLEELEASMDAVAPGS 222 (575)
T ss_pred HHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccCchhhhhhHHhhccCchhhhhhHhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999998888877776
No 3
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=99.86 E-value=3e-22 Score=178.56 Aligned_cols=107 Identities=27% Similarity=0.483 Sum_probs=94.2
Q ss_pred HHHhhhc-chhhHHHhcCCchhhhhccCcchhhHHHHH----HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHH
Q psy4337 12 LQTCVKS-KGPEILAQFGDRTDALEGRKFVPTIVIDDL----DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRY 86 (174)
Q Consensus 12 i~~C~~s-~G~eLLak~gd~T~al~e~~~wL~~~Id~L----e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~ 86 (174)
|+..+-| .|.-.-...++++..+...+.||.+++++| |++||+ +++.+++||+|
T Consensus 87 mk~k~fske~ls~~~~~dpke~~k~d~i~~i~~~~~el~~q~e~~ea~---------------------e~e~~~erh~~ 145 (548)
T COG5665 87 MKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQYEAQ---------------------ENEEQTERHEF 145 (548)
T ss_pred HHHHHhhHhhccCcccCChhHhccccceehHHHHHHHHHHHHHHHHHH---------------------HhHHHHHHHHH
Confidence 3444555 355555566888888889999999999999 666665 68999999999
Q ss_pred HHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCCCCCccccccccccCc
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIED 139 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd~df~ede~iYd~L~L 139 (174)
||.+||+|||.|+|.+++|+-|++|++||.||||+|++|||.++++||++||.
T Consensus 146 h~~~le~i~~~l~n~~~~pe~v~~~q~di~yyve~~~~~df~e~~~~y~~~~~ 198 (548)
T COG5665 146 HIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEYDTIYEDMGC 198 (548)
T ss_pred HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHhhcCCCcchhhhhhHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999994
No 4
>KOG3160|consensus
Probab=95.80 E-value=0.0038 Score=52.81 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=38.5
Q ss_pred CCCCCCCChhhHHHhhhc-chhhHHHhcCCchhhhhccCcchh
Q psy4337 1 CAPVAGVNFRKLQTCVKS-KGPEILAQFGDRTDALEGRKFVPT 42 (174)
Q Consensus 1 Ca~~~~v~~~~i~~C~~s-~G~eLLak~gd~T~al~e~~~wL~ 42 (174)
|++..+.+++.|+.|+.| .|.+|+.++|.+|.++.|.+.|+-
T Consensus 140 C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VP 182 (220)
T KOG3160|consen 140 CLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVP 182 (220)
T ss_pred HHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcC
Confidence 888999999999999999 799999999999999888877763
No 5
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.75 E-value=0.018 Score=49.19 Aligned_cols=92 Identities=37% Similarity=0.579 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhCC-------CCChhHHhhhhhHHH---HHHhh------CCCCCCcccccccccc
Q psy4337 74 MDELKAKVERHRYHIRKLETLLRMLDNM-------SVEVDQIRRIKDDVE---YYIES------SQDIDFEENEYIYDDI 137 (174)
Q Consensus 74 ~~~l~~~ierhk~Hi~kLE~llR~L~N~-------~l~~e~v~~ikedie---yYve~------nqd~df~ede~iYd~L 137 (174)
..=|...|+..+-+|..+|.=+-.|.+. .-..+.+..++.-|+ +.|.. .-+-+..+++.+. +|
T Consensus 124 ~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~-~i 202 (233)
T PF04065_consen 124 RDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVE-DI 202 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HH
Confidence 3445556666777777777766655543 233444444443332 22211 0122345555565 36
Q ss_pred CcchhhhhhcccCCCcccccccccccccc
Q psy4337 138 EDDVEYYIESSQDIDFEENEYIYDDIEDE 166 (174)
Q Consensus 138 ~Lde~~~~~~~~~~~~~~~~~~y~d~~~~ 166 (174)
.=+-.+|+++.+.|+|.+.+.|||||+++
T Consensus 203 kedieyYve~n~d~Df~ede~iYddl~Ld 231 (233)
T PF04065_consen 203 KEDIEYYVESNQDPDFEEDEDIYDDLNLD 231 (233)
T ss_pred HHHHHHHHHcCCCCcccchHhHhhccCCC
Confidence 66779999999999999999999999875
No 6
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=92.42 E-value=0.83 Score=33.03 Aligned_cols=74 Identities=14% Similarity=0.311 Sum_probs=46.4
Q ss_pred HHHH-HhhhHHHHHH--hhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhh
Q psy4337 45 IDDL-DQFESEIESL--LVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIES 121 (174)
Q Consensus 45 Id~L-e~~EaEvEsL--~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~ 121 (174)
+..| +++..|+.+. +-.|--- +....=-..+...++||||||+|| ..+..-+-++...++-|-+-
T Consensus 4 L~klLemlDtEmA~~mL~DLr~de--kRsPQLYnAI~k~L~RHkF~iskl----------~pd~~~LG~L~~aL~ey~~~ 71 (82)
T PF11123_consen 4 LEKLLEMLDTEMAQQMLADLRDDE--KRSPQLYNAIGKLLDRHKFQISKL----------QPDENILGELAAALEEYKKM 71 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchh--hcChHHHHHHHHHHHHccchhhhc----------CccHHHHHHHHHHHHHHHHH
Confidence 3444 7777777775 3332111 111344567889999999999998 23444455788888888776
Q ss_pred CCCCCCccc
Q psy4337 122 SQDIDFEEN 130 (174)
Q Consensus 122 nqd~df~ed 130 (174)
-...++.++
T Consensus 72 ~g~~~l~~d 80 (82)
T PF11123_consen 72 VGADGLTDD 80 (82)
T ss_pred cCCCCCCcC
Confidence 555444443
No 7
>PHA00425 DNA packaging protein, small subunit
Probab=90.09 E-value=1.7 Score=31.78 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=39.0
Q ss_pred HhhhHHHHHH--hhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCC
Q psy4337 49 DQFESEIESL--LVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQD 124 (174)
Q Consensus 49 e~~EaEvEsL--~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd 124 (174)
+.+..|+.+. +-.|--- +....=-..+...++||||||+||. .+..-+-++-..++-|-+--..
T Consensus 11 emlDTE~a~~mL~DL~dde--kRtPQLYnAIgKlL~RHkF~isKl~----------pD~~iLg~la~~l~ey~~~~g~ 76 (88)
T PHA00425 11 EMLDTEMAQRMLADLKDDE--KRTPQLYNAIGKLLDRHKFQISKLQ----------PDENILGGLAAALEEYKEKVGA 76 (88)
T ss_pred HHHhHHHHHHHHHHhcCcc--ccChHHHHHHHHHHHHhcccccccC----------CcHHHHHHHHHHHHHHHHhcCC
Confidence 7788888776 3332111 1123456678899999999999982 2222334566667767654333
No 8
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.61 E-value=15 Score=30.17 Aligned_cols=112 Identities=18% Similarity=0.289 Sum_probs=54.7
Q ss_pred CCCCChhhHHHhhhcchhhHHHhc---CC-------chhhhhccCcchhhHHHHHHhhhHHHHHH----hhccCCCCCCc
Q psy4337 4 VAGVNFRKLQTCVKSKGPEILAQF---GD-------RTDALEGRKFVPTIVIDDLDQFESEIESL----LVGKKKRLDKD 69 (174)
Q Consensus 4 ~~~v~~~~i~~C~~s~G~eLLak~---gd-------~T~al~e~~~wL~~~Id~Le~~EaEvEsL----~~~kKkK~~~~ 69 (174)
.-||....|+.++++...++|=.. |- +.++..-....+.....+++..+..++.| ...+++|..+.
T Consensus 24 ~~gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~ 103 (188)
T PF03962_consen 24 EKGIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESE 103 (188)
T ss_pred ccCCchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 368999999999998544555433 21 11222222222222222224444444444 23344444431
Q ss_pred -hhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhh
Q psy4337 70 -KQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIES 121 (174)
Q Consensus 70 -~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~ 121 (174)
....+++++..-..++--...|+ .+ ...+|+.|..++.++...++.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~----~~--~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELE----KY--SENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HH--HhcCHHHHHHHHHHHHHHHHH
Confidence 22223333332222222222222 11 346999999999988887765
No 9
>KOG2150|consensus
Probab=71.00 E-value=3.7 Score=39.35 Aligned_cols=28 Identities=57% Similarity=0.902 Sum_probs=24.9
Q ss_pred chhhhhhcccCCCcccccccccccccce
Q psy4337 140 DVEYYIESSQDIDFEENEYIYDDIEDEC 167 (174)
Q Consensus 140 de~~~~~~~~~~~~~~~~~~y~d~~~~~ 167 (174)
+-.+|.++.++|+|-+.++|||+++++-
T Consensus 183 di~yyVe~nqdpdF~e~e~iYd~l~le~ 210 (575)
T KOG2150|consen 183 DITYYVESNQDPDFLEDETIYDDLNLEE 210 (575)
T ss_pred HHHHHHHhccCchhhhhhHHhhccCchh
Confidence 4468999999999999999999998874
No 10
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=60.71 E-value=13 Score=24.27 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhCCCCChhHHhh-hhhHHHH
Q psy4337 86 YHIRKLETLLRMLDNMSVEVDQIRR-IKDDVEY 117 (174)
Q Consensus 86 ~Hi~kLE~llR~L~N~~l~~e~v~~-ikediey 117 (174)
-.+.+||.+++.|+|+.++.++.-. .++.+.-
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l 35 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMEL 35 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999998766554 3444433
No 11
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=58.73 E-value=41 Score=25.74 Aligned_cols=29 Identities=21% Similarity=0.535 Sum_probs=22.2
Q ss_pred HHhhhCCCCChhHHhhhhhHHHHHHhhCCC
Q psy4337 95 LRMLDNMSVEVDQIRRIKDDVEYYIESSQD 124 (174)
Q Consensus 95 lR~L~N~~l~~e~v~~ikedieyYve~nqd 124 (174)
|+.+ |..++++.|..+-+++.--++....
T Consensus 94 Lk~~-~~~i~~~~v~~~~d~~~e~~e~~~e 122 (171)
T PF03357_consen 94 LKKI-NKQINLDKVEKLMDDFQEEMEDQDE 122 (171)
T ss_dssp HHHH-HHSTTSCCHHHHHHHHHHHHHHHTS
T ss_pred HHHH-HHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444 5568899999999999998887554
No 12
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=57.14 E-value=56 Score=25.88 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHhhhCC--CCChhHHhhhhhHHHHHHhhCCC
Q psy4337 73 RMDELKAKVERHRYHIRKLETLLRMLDNM--SVEVDQIRRIKDDVEYYIESSQD 124 (174)
Q Consensus 73 r~~~l~~~ierhk~Hi~kLE~llR~L~N~--~l~~e~v~~ikedieyYve~nqd 124 (174)
=.+.++.+++--+.||.+||.|+..+.-. ....+-+..|-....-.+....+
T Consensus 34 Lk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~~~~ 87 (147)
T cd07909 34 LKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEETGD 87 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhccCC
Confidence 34557777777889999999999999665 22335566665555556554433
No 13
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=56.84 E-value=68 Score=26.37 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=46.9
Q ss_pred HhhhHHHHHH-hhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHH-Hhhh---CCCCChhH---HhhhhhHHHHHHh
Q psy4337 49 DQFESEIESL-LVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLL-RMLD---NMSVEVDQ---IRRIKDDVEYYIE 120 (174)
Q Consensus 49 e~~EaEvEsL-~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~ll-R~L~---N~~l~~e~---v~~ikedieyYve 120 (174)
+.++.+++.+ ... .+...+..-.++..+++.+-+.+..+..+..++ +++. ...++++. +.++.++++...+
T Consensus 128 ~~l~~~l~~le~~~-~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (292)
T PF01544_consen 128 EELEDELDELEDEL-DDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLE 206 (292)
T ss_dssp HHHHHHHHHHHHHH-THTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-ccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6667777777 222 222233345689999999999888888888888 8887 33444444 5566666666544
No 14
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=55.04 E-value=39 Score=28.73 Aligned_cols=84 Identities=7% Similarity=0.091 Sum_probs=46.0
Q ss_pred hhccCcchhhHHHHH----H-------hhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCC
Q psy4337 34 LEGRKFVPTIVIDDL----D-------QFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMS 102 (174)
Q Consensus 34 l~e~~~wL~~~Id~L----e-------~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~ 102 (174)
..|-..|+++-|... . .+++=+++-++..|+|.....+.. +.-.-...|..||...|+.++.+= .
T Consensus 93 ~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~ee-a~~~v~~tR~~F~~~aLdYv~qLn---~ 168 (215)
T cd07631 93 MFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYE-VTEDVYTSRKKQHQTMMHYFCALN---T 168 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 346667777777766 3 344444444444444432111111 223444599999999999998642 3
Q ss_pred CChhHHhhhhhHHHHHHhh
Q psy4337 103 VEVDQIRRIKDDVEYYIES 121 (174)
Q Consensus 103 l~~e~v~~ikedieyYve~ 121 (174)
|..-.--+|.+.|--|+..
T Consensus 169 lQ~rKKfefLe~lLs~m~A 187 (215)
T cd07631 169 LQYKKKIALLEPLLGYMQA 187 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334555655555543
No 15
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=46.41 E-value=73 Score=25.03 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=37.0
Q ss_pred HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHh
Q psy4337 49 DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIR 109 (174)
Q Consensus 49 e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~ 109 (174)
+++|.=.|+|. .-.++|.++-+.......-+..+|+.+..+|....|+|+++-
T Consensus 24 e~Lee~~ekl~--------~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis~~eL~ 76 (135)
T PRK10947 24 ETLEEMLEKLE--------VVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL 76 (135)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 56666666661 112345555555566666788899999999999999998873
No 16
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=45.55 E-value=34 Score=26.45 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=49.1
Q ss_pred CcchhhHHHHHHhhhHHHHHH-hhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCCh
Q psy4337 38 KFVPTIVIDDLDQFESEIESL-LVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEV 105 (174)
Q Consensus 38 ~~wL~~~Id~Le~~EaEvEsL-~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~ 105 (174)
.-|+.+.+-+++.+-.++|+| +|.- ..++.++++.+.+|---|..+=.|+|-++++-+|-
T Consensus 17 ~P~l~d~~~~~r~~~n~~e~L~~qed--------k~~l~e~e~q~k~~l~~i~e~G~iird~d~glVDF 77 (123)
T COG4911 17 LPWLRDRLIQLRKIKNEIELLLVQED--------KYALQEYESQTKKILDEIIEKGIIIRDIDIGLVDF 77 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHcCceeeccccccccc
Confidence 348888888888899999999 6643 25888899888888888888888999999998873
No 17
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=45.52 E-value=1e+02 Score=24.13 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=37.2
Q ss_pred HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHh
Q psy4337 49 DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIR 109 (174)
Q Consensus 49 e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~ 109 (174)
+++|.=.|+|.. -.++|-++-+.......-...+|+.+..++....|+|+++-
T Consensus 24 e~Lee~~ekl~~--------vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~~Git~eeL~ 76 (134)
T PRK10328 24 DVLEEMLEKFRV--------VTKERREEEEQQQRELAERQEKINTWLELMKADGINPEELL 76 (134)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 566665666611 12345555555666677788899999999999999998873
No 18
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=45.51 E-value=82 Score=26.85 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=36.4
Q ss_pred hhccCcchhhHHHHH-----------HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHH
Q psy4337 34 LEGRKFVPTIVIDDL-----------DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLR 96 (174)
Q Consensus 34 l~e~~~wL~~~Id~L-----------e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR 96 (174)
..|-..|+++-|... |.+++=+++.++..|||.. .....-...+-...|.+||..-|+.++.
T Consensus 93 ~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~-E~~eae~~~~l~~sRr~F~~~ALdYV~q 165 (215)
T cd07632 93 VLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKREN-EKVKAEVAKEVAYSRRKQHLSSLQYYCA 165 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777666 4455555555555444421 1111112224567788899999999885
No 19
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=45.17 E-value=76 Score=26.66 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=44.3
Q ss_pred ccCcchhhHHHHH-----------HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCC
Q psy4337 36 GRKFVPTIVIDDL-----------DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVE 104 (174)
Q Consensus 36 e~~~wL~~~Id~L-----------e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~ 104 (174)
|-..|++.-|... +.+++-+++-++..|+|+.. .-.-++-.-...|+.||...|+.|..+= .|.
T Consensus 97 pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~--~~~ea~~~l~~~r~~f~~~~l~Yv~~l~---~vq 171 (207)
T cd07602 97 PLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKEN--QLQEADAQLDMERRNFHQASLEYVFKLQ---EVQ 171 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 5556666655555 33444444434444444221 2233445667789999999999998742 223
Q ss_pred hhHHhhhhhHHHHHHhh
Q psy4337 105 VDQIRRIKDDVEYYIES 121 (174)
Q Consensus 105 ~e~v~~ikedieyYve~ 121 (174)
.-.--++-+.|--|+..
T Consensus 172 ~rKkfefle~ll~~m~a 188 (207)
T cd07602 172 ERKKFEFVETLLSFMYG 188 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333455555555543
No 20
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=45.14 E-value=38 Score=28.17 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=16.7
Q ss_pred CCCCChhHHhhhhhHHHHHHhhC
Q psy4337 100 NMSVEVDQIRRIKDDVEYYIESS 122 (174)
Q Consensus 100 N~~l~~e~v~~ikedieyYve~n 122 (174)
|..++.+.|++|.|+|.-.++-.
T Consensus 124 ~k~~~idkVd~lmDei~E~~e~~ 146 (191)
T PTZ00446 124 NNEINTQKVEKIIDTIQENKDIQ 146 (191)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHH
Confidence 35567888888888888777653
No 21
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=44.89 E-value=85 Score=22.93 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=45.3
Q ss_pred hhhHHHhcCCchhhhhccCcchhhHHHHH-HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHh
Q psy4337 20 GPEILAQFGDRTDALEGRKFVPTIVIDDL-DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRM 97 (174)
Q Consensus 20 G~eLLak~gd~T~al~e~~~wL~~~Id~L-e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~ 97 (174)
-.++|..||+-...+.++...|.+++-+- -.+-.+.-.+++ .++++ -.++.+.-.+-+..-.++||+.+|.+
T Consensus 8 i~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~--~r~~k----~~~eD~~FliR~D~~Kl~Rl~~lL~~ 80 (92)
T cd07978 8 IRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ--RRRGK----VKVEDLIFLLRKDPKKLARLRELLSM 80 (92)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCC----CCHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56788999998776666654443333222 222223333344 22222 16788999999999999999999884
No 22
>PF09210 DUF1957: Domain of unknown function (DUF1957); InterPro: IPR015293 This C-terminal domain is found in a set of hypothetical bacterial proteins that have a N-terminal domain related to the glycoside hydrolase family 57 family GH57 from CAZY. The exact function of this domain has not, as yet, been defined. ; PDB: 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=42.42 E-value=50 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=27.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhh
Q psy4337 78 KAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIK 112 (174)
Q Consensus 78 ~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ik 112 (174)
+...+|-+.|+.+...|..+|.++.++.+-+..+.
T Consensus 54 ~YA~~R~~~Hl~rF~~L~~~l~~~~id~~~L~~~E 88 (102)
T PF09210_consen 54 EYARERFKEHLNRFWRLYDMLESGRIDEEWLEELE 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 67788999999999999999999999977666655
No 23
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=41.90 E-value=35 Score=23.51 Aligned_cols=34 Identities=9% Similarity=0.243 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhCCCCChhHHhh-hhhHHHHHHh
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQIRR-IKDDVEYYIE 120 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v~~-ikedieyYve 120 (174)
-+.+||.|++.|+++.+.-++.-. .++-+...-.
T Consensus 6 ~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~ 40 (67)
T TIGR01280 6 ALSELEQIVQKLESGDLALEEALNLFERGMALARR 40 (67)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999998665543 4444444433
No 24
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=40.69 E-value=47 Score=23.67 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhCCCCChhHHhh-hhhHHHHHH
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQIRR-IKDDVEYYI 119 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v~~-ikedieyYv 119 (174)
-+.+||.|++.|+++.+.-++.-. .++-+..+-
T Consensus 15 a~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k 48 (80)
T PRK00977 15 ALAELEEIVTRLESGDLPLEESLAAFERGVALAR 48 (80)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 356789999999999998765543 444444443
No 25
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=40.49 E-value=98 Score=26.06 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=45.8
Q ss_pred hccCcchhhHHHHH-----------HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCC
Q psy4337 35 EGRKFVPTIVIDDL-----------DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSV 103 (174)
Q Consensus 35 ~e~~~wL~~~Id~L-----------e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l 103 (174)
.|-..|+.+-|... +.+++=+++.++..++|+....+ -+.-.-...|+.||...|+.++.+= .|
T Consensus 96 ~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~--EA~~~l~~~r~~F~~~sLdYv~qin---~l 170 (207)
T cd07635 96 KPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQ--EADVQVEQNRQHFYELSLEYVCKLQ---EI 170 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 35666777766665 34444444433333333332222 2333555689999999999998752 23
Q ss_pred ChhHHhhhhhHHHHHHhh
Q psy4337 104 EVDQIRRIKDDVEYYIES 121 (174)
Q Consensus 104 ~~e~v~~ikedieyYve~ 121 (174)
..-.--+|-+.|--|+..
T Consensus 171 Q~rKKfe~le~ll~~m~a 188 (207)
T cd07635 171 QERKKFECVEPMLSFFQG 188 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333566666666554
No 26
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.96 E-value=59 Score=24.39 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHH----hHHHHHHHHHHH
Q psy4337 72 DRMDELKAKVER----HRYHIRKLETLL 95 (174)
Q Consensus 72 ~r~~~l~~~ier----hk~Hi~kLE~ll 95 (174)
+++..|+..+.. |+-||.+||..+
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555555555 888888887655
No 27
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.78 E-value=41 Score=23.82 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhCCCCChhHHhh-hhhHHHHH
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQIRR-IKDDVEYY 118 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v~~-ikedieyY 118 (174)
-+.+||.|++.|+++.+.-++.-. .++-+...
T Consensus 9 al~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~ 41 (75)
T PRK14066 9 ALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHA 41 (75)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999998665432 44444333
No 28
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.38 E-value=1e+02 Score=25.52 Aligned_cols=79 Identities=8% Similarity=0.101 Sum_probs=44.5
Q ss_pred ccCcchhhHHHHH-----------HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCC
Q psy4337 36 GRKFVPTIVIDDL-----------DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVE 104 (174)
Q Consensus 36 e~~~wL~~~Id~L-----------e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~ 104 (174)
|-.+|+++-|... +.+++=+++.++.++||.. .-+-+.-+-...|..||...|+.++.+= .|.
T Consensus 91 pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~---~l~Ea~~~L~~~Rk~f~~asLdyv~~ln---~iq 164 (200)
T cd07637 91 QLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPH---EVEEATSTLTITRKCFRHLALDYVLQIN---VLQ 164 (200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 5566666666655 3344444444555544432 1233445677789999999999998742 223
Q ss_pred hhHHhhhhhHHHHHHh
Q psy4337 105 VDQIRRIKDDVEYYIE 120 (174)
Q Consensus 105 ~e~v~~ikedieyYve 120 (174)
.-.--++-+.|--|+.
T Consensus 165 ~kKk~e~le~ll~~~~ 180 (200)
T cd07637 165 AKKKFEILDSMLSFMH 180 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333345555555544
No 29
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=36.92 E-value=28 Score=24.12 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=13.1
Q ss_pred HhhhHHHHHH-hhccCCCCC
Q psy4337 49 DQFESEIESL-LVGKKKRLD 67 (174)
Q Consensus 49 e~~EaEvEsL-~~~kKkK~~ 67 (174)
-.+-+||+.| ++.+||+..
T Consensus 35 alLq~EIeRlkAe~~kK~~s 54 (65)
T COG5509 35 ALLQAEIERLKAELAKKKAS 54 (65)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 3567899999 666655544
No 30
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.78 E-value=1.1e+02 Score=25.83 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=36.3
Q ss_pred hhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHh
Q psy4337 50 QFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIE 120 (174)
Q Consensus 50 ~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve 120 (174)
.+++=+++.++.+|+|... ....-++-+-...|..||...|+.+..+= .|..-.--++-+.|--|++
T Consensus 120 ~~d~al~K~~~l~k~k~~~-~~~~Ea~~~l~~~R~~F~~~~ldYv~~ln---~iq~kKk~e~Le~ll~~m~ 186 (215)
T cd07601 120 DHDGVLSKYSRLSKKRENT-KVKIEVNDEVYACRKKQHQTAMNYYCALN---LLQYKKTTALLEPMIGYLQ 186 (215)
T ss_pred HHHHHHHHHhhCCcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554321 12113334557789999999999998642 2233333345555554544
No 31
>PRK07639 acyl carrier protein; Provisional
Probab=35.62 E-value=48 Score=23.59 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHhhCCCCCCccccccccccCcchhhhhh
Q psy4337 109 RRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIE 146 (174)
Q Consensus 109 ~~ikedieyYve~nqd~df~ede~iYd~L~Lde~~~~~ 146 (174)
+.|+.-|.-++....-+++.++..++++|+||..++.+
T Consensus 8 ~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~ve 45 (86)
T PRK07639 8 NAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQ 45 (86)
T ss_pred HHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHH
Confidence 35666666666433324678888999999999876654
No 32
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=34.60 E-value=1.2e+02 Score=23.78 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=29.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhCCCC-Ch-hHHhhhhhHHHHHHhh
Q psy4337 76 ELKAKVERHRYHIRKLETLLRMLDNMSV-EV-DQIRRIKDDVEYYIES 121 (174)
Q Consensus 76 ~l~~~ierhk~Hi~kLE~llR~L~N~~l-~~-e~v~~ikedieyYve~ 121 (174)
.++.+++--+-|+.+||.+++.|.-.-- .+ +-+..|-...+-.++.
T Consensus 39 ~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~ 86 (159)
T PF05974_consen 39 ALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEE 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhc
Confidence 3455555557899999999999964421 22 4555666666666655
No 33
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=34.38 E-value=46 Score=23.51 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhCCCCChhHH
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQI 108 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v 108 (174)
-+.+||.|++.|+++.+.-++.
T Consensus 11 ~l~~LE~IV~~LE~~~l~Lees 32 (75)
T PRK14064 11 AIAELETIVEALENGSASLEDS 32 (75)
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
Confidence 3567899999999999976543
No 34
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.84 E-value=56 Score=24.36 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhCCCCChhHHh
Q psy4337 88 IRKLETLLRMLDNMSVEVDQIR 109 (174)
Q Consensus 88 i~kLE~llR~L~N~~l~~e~v~ 109 (174)
+.+||.|++.|+++.+.-++.-
T Consensus 14 l~~LEeIV~~LEsgdl~LEesl 35 (95)
T PRK14069 14 LRELEQIAEKLERQDFSLEESL 35 (95)
T ss_pred HHHHHHHHHHHHCCCCCHHHHH
Confidence 5678899999999999866543
No 35
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.13 E-value=60 Score=23.28 Aligned_cols=22 Identities=9% Similarity=0.382 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhCCCCChhHH
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQI 108 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v 108 (174)
-+.+||.|++.|+++.+..++.
T Consensus 12 al~~LEeIV~~LE~~~l~Lees 33 (80)
T PRK14067 12 QLARLQEIVDALEGGDLPLEES 33 (80)
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
Confidence 3567899999999999986654
No 36
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.75 E-value=54 Score=23.20 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhCCCCChhHHh
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQIR 109 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v~ 109 (174)
-+.+||.|++.|+++.++-++.-
T Consensus 10 al~~LE~Iv~~LE~~~l~Leesl 32 (76)
T PRK14063 10 AISQLEHLVSKLEQGDVPLEEAI 32 (76)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHH
Confidence 36789999999999999866543
No 37
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.42 E-value=1.8e+02 Score=20.89 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=11.2
Q ss_pred hhhHHHHHHhhhHHHHHH
Q psy4337 41 PTIVIDDLDQFESEIESL 58 (174)
Q Consensus 41 L~~~Id~Le~~EaEvEsL 58 (174)
++.+||++-.+-.|||.|
T Consensus 13 iqqAvdTI~LLQmEieEL 30 (79)
T COG3074 13 VQQAIDTITLLQMEIEEL 30 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666665556667776
No 38
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.37 E-value=2e+02 Score=21.22 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=41.5
Q ss_pred CChhhHHHhhhcchhhHHHhcCCchhhhhccCcchhhHHHHH----HhhhHHHHHHhhccCCCCC-CchhhhHHHHHHHH
Q psy4337 7 VNFRKLQTCVKSKGPEILAQFGDRTDALEGRKFVPTIVIDDL----DQFESEIESLLVGKKKRLD-KDKQDRMDELKAKV 81 (174)
Q Consensus 7 v~~~~i~~C~~s~G~eLLak~gd~T~al~e~~~wL~~~Id~L----e~~EaEvEsL~~~kKkK~~-~~~~~r~~~l~~~i 81 (174)
-+|.-|.++...-|.-+...... +.+......=+...++.. .++|++++.|-.. .+ ..-+-++++++..+
T Consensus 7 ~~w~ii~a~~~~~~~~~~~~l~~-~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~----~dv~~L~l~l~el~G~~ 81 (106)
T PF10805_consen 7 KNWGIIWAVFGIAGGIFWLWLRR-TYAKREDIEKLEERLDEHDRRLQALETKLEHLPTR----DDVHDLQLELAELRGEL 81 (106)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHhHH
Confidence 36777777775444444333322 222222222233444444 6677777777110 00 00223555555555
Q ss_pred HHhHHHHHHHHHHHHhh
Q psy4337 82 ERHRYHIRKLETLLRML 98 (174)
Q Consensus 82 erhk~Hi~kLE~llR~L 98 (174)
..-..++.-+..++++|
T Consensus 82 ~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 82 KELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555665555555544
No 39
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=30.15 E-value=1.2e+02 Score=21.84 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhCCCCChhHHh-hhhhHHHHHHhh
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQIR-RIKDDVEYYIES 121 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v~-~ikedieyYve~ 121 (174)
-+..||.|.+.|+||.+.-++.- ..+.-+..|-.+
T Consensus 15 ~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c 50 (81)
T COG1722 15 ALAELEEIVESLESGELPLEEALKEFERGMALYKEC 50 (81)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888765544 355556555544
No 40
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.06 E-value=69 Score=22.75 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhCCCCChhHH
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQI 108 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v 108 (174)
-+.+||.|++.|+|+.+.-++.
T Consensus 11 al~~Le~IV~~LE~gdl~Lees 32 (76)
T PRK14068 11 MMQELEQIVQKLDNETVSLEES 32 (76)
T ss_pred HHHHHHHHHHHHHcCCCCHHHH
Confidence 4677899999999999986654
No 41
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.76 E-value=54 Score=22.95 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhCCCCChhHHh
Q psy4337 89 RKLETLLRMLDNMSVEVDQIR 109 (174)
Q Consensus 89 ~kLE~llR~L~N~~l~~e~v~ 109 (174)
.+||.|++.|+++.++-++.-
T Consensus 2 ~~LEeIV~~LE~gel~Leesl 22 (69)
T PRK14070 2 KELEEIVNRLENEDLPLEESI 22 (69)
T ss_pred HHHHHHHHHHHCCCCCHHHHH
Confidence 689999999999999866543
No 42
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.38 E-value=1.6e+02 Score=24.60 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=42.9
Q ss_pred ccCcchhhHHHHH----HhhhHHHHHH--hhccCCCCCCchhhhHHHH--HHHHHHhHHHHHHHHHHHHhhhCCCCChhH
Q psy4337 36 GRKFVPTIVIDDL----DQFESEIESL--LVGKKKRLDKDKQDRMDEL--KAKVERHRYHIRKLETLLRMLDNMSVEVDQ 107 (174)
Q Consensus 36 e~~~wL~~~Id~L----e~~EaEvEsL--~~~kKkK~~~~~~~r~~~l--~~~ierhk~Hi~kLE~llR~L~N~~l~~e~ 107 (174)
|-.+|+++-|... ..|+-.-++. +-.|..+.++.++..+++. +-...|..||...|+.|..+= .|..-.
T Consensus 91 ~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln---~vq~kK 167 (200)
T cd07638 91 QLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNKQHEVEEATNILTATRKCFRHIALDYVLQIN---VLQSKR 167 (200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 4455555555544 3444444444 1122122222223344443 556789999999999998642 233333
Q ss_pred HhhhhhHHHHHHhh
Q psy4337 108 IRRIKDDVEYYIES 121 (174)
Q Consensus 108 v~~ikedieyYve~ 121 (174)
--+|-+.|--|+..
T Consensus 168 kfe~le~ll~~m~a 181 (200)
T cd07638 168 RSEILKSMLSFMYA 181 (200)
T ss_pred HHHHHHHHHHHHHH
Confidence 33455655555543
No 43
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.26 E-value=1.3e+02 Score=20.55 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHhhhCC-CCChhHHhhhhhHHH
Q psy4337 71 QDRMDELKAKVERHRYHIRKLETLLRMLDNM-SVEVDQIRRIKDDVE 116 (174)
Q Consensus 71 ~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~-~l~~e~v~~ikedie 116 (174)
++++..++..+..|.--+.+||.-...++.. .--..++..|++...
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555566666555555444 222444555555443
No 44
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=28.30 E-value=33 Score=25.03 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=19.1
Q ss_pred chhhHHHhcCCchhhhhccCcchhhHHHHH-HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHh
Q psy4337 19 KGPEILAQFGDRTDALEGRKFVPTIVIDDL-DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRM 97 (174)
Q Consensus 19 ~G~eLLak~gd~T~al~e~~~wL~~~Id~L-e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~ 97 (174)
.-.++|..||+-...+.++...|.+.|-+- -.+=.+.-.+++. ++.+ .-.++.+--.+.+.+-.++||..+|++
T Consensus 6 eI~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~-rg~~----~i~~eDl~F~lR~D~~Kl~Rl~~~L~~ 80 (93)
T PF02269_consen 6 EIRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQR-RGSK----KIKVEDLLFLLRKDPKKLARLRELLSM 80 (93)
T ss_dssp CCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccC----cCcHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 356889999998888877765544443322 1111111112222 2222 136777888888999999999888764
No 45
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=28.06 E-value=1.1e+02 Score=22.10 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhhh
Q psy4337 72 DRMDELKAKVERHRYHIRKLETLLRMLD 99 (174)
Q Consensus 72 ~r~~~l~~~ierhk~Hi~kLE~llR~L~ 99 (174)
.=...++.....|+-|+..|...+..+.
T Consensus 31 ~lk~~f~~~~~~~~~~~~~L~~~i~~~G 58 (111)
T PF09537_consen 31 ELKSLFQEFAQERQQHAEELQAEIQELG 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456688888999999999999999885
No 46
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.32 E-value=1.8e+02 Score=24.06 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=35.5
Q ss_pred ccCcchhhHHHHH-----------HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHh
Q psy4337 36 GRKFVPTIVIDDL-----------DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRM 97 (174)
Q Consensus 36 e~~~wL~~~Id~L-----------e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~ 97 (174)
|-..|+++-|... +.+++=+++.++..|+|.. .-+-+..+-...|..||...|+.|+.+
T Consensus 91 pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K~~---~~~Ea~~~L~~~Rk~f~~~sldyv~~i 160 (200)
T cd07603 91 QLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSKPQ---EAEEATNILTATRSCFRHTALDYVLQI 160 (200)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455665555555 2344444444445554421 234444567778999999999999874
No 47
>PRK10698 phage shock protein PspA; Provisional
Probab=27.24 E-value=2.4e+02 Score=23.58 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=22.2
Q ss_pred hhhHHHhhhcchhhHHHhcCCchhhhhcc
Q psy4337 9 FRKLQTCVKSKGPEILAQFGDRTDALEGR 37 (174)
Q Consensus 9 ~~~i~~C~~s~G~eLLak~gd~T~al~e~ 37 (174)
|+.|.+=+.|..+.++-+..++.+.+.-.
T Consensus 4 f~Rl~~ii~a~in~~ldkaEDP~k~l~q~ 32 (222)
T PRK10698 4 FSRFADIVNANINALLEKAEDPQKLVRLM 32 (222)
T ss_pred HHHHHHHHHhHHHHHHHhhcCHHHHHHHH
Confidence 66777778888888899998888766443
No 48
>KOG0964|consensus
Probab=26.88 E-value=93 Score=32.34 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=38.3
Q ss_pred HhhhHHHHHH-hhccCCCCC-CchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCC
Q psy4337 49 DQFESEIESL-LVGKKKRLD-KDKQDRMDELKAKVERHRYHIRKLETLLRMLDNM 101 (174)
Q Consensus 49 e~~EaEvEsL-~~~kKkK~~-~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~ 101 (174)
.+|..+++.| ...+..|+. ...++.+......++..+.|+.+++.=++.++++
T Consensus 716 ~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~e 770 (1200)
T KOG0964|consen 716 NAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESE 770 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4677788888 333333332 2356778888889999999999998888888775
No 49
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.79 E-value=2.3e+02 Score=23.56 Aligned_cols=41 Identities=5% Similarity=0.155 Sum_probs=24.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHh
Q psy4337 77 LKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIE 120 (174)
Q Consensus 77 l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve 120 (174)
-+-...|+.||...|+.++.+= .|..-.--++-+.|--|+.
T Consensus 143 ~~l~~~R~~F~~~~ldyv~~ln---~~q~kKk~e~le~ll~~m~ 183 (202)
T cd07606 143 EDLGTTRSAFETARFDLMNRLH---AADARKRVEFLERLSGSMD 183 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999998742 2222222244555555544
No 50
>PRK09458 pspB phage shock protein B; Provisional
Probab=25.75 E-value=2.3e+02 Score=20.25 Aligned_cols=25 Identities=44% Similarity=0.662 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHH
Q psy4337 71 QDRMDELKAKVERHRYHIRKLETLL 95 (174)
Q Consensus 71 ~~r~~~l~~~ierhk~Hi~kLE~ll 95 (174)
..++++|-..-+|-.--|..||.||
T Consensus 41 ~~~L~~L~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 41 QQRLAQLTEKAERMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666555
No 51
>KOG1656|consensus
Probab=25.48 E-value=1.8e+02 Score=24.89 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=32.9
Q ss_pred cCcchhhHHHHH--------HhhhHHHHHHhhccCCCCCCc---hhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCCh
Q psy4337 37 RKFVPTIVIDDL--------DQFESEIESLLVGKKKRLDKD---KQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEV 105 (174)
Q Consensus 37 ~~~wL~~~Id~L--------e~~EaEvEsL~~~kKkK~~~~---~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~ 105 (174)
++.-|+.+.+-| -+++.|++..+.+-..|++.. --.|.-..+..+.+.---+.++|.=+-+|+|-+...
T Consensus 22 aI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~ 101 (221)
T KOG1656|consen 22 AIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNT 101 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccH
Confidence 455666666666 244556665422222222210 111333333334444444455555555666655444
Q ss_pred hHHhh
Q psy4337 106 DQIRR 110 (174)
Q Consensus 106 e~v~~ 110 (174)
+-++.
T Consensus 102 Evl~~ 106 (221)
T KOG1656|consen 102 EVLDA 106 (221)
T ss_pred HHHHH
Confidence 44333
No 52
>KOG2911|consensus
Probab=25.41 E-value=3.5e+02 Score=25.49 Aligned_cols=62 Identities=24% Similarity=0.221 Sum_probs=37.1
Q ss_pred hhhHHHHH----HhhhHHHHHH-----hhccCCCCCCch--hhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCC
Q psy4337 41 PTIVIDDL----DQFESEIESL-----LVGKKKRLDKDK--QDRMDELKAKVERHRYHIRKLETLLRMLDNMS 102 (174)
Q Consensus 41 L~~~Id~L----e~~EaEvEsL-----~~~kKkK~~~~~--~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~ 102 (174)
|..++..| +.++.|+|.. +..|++++.-+. -.+..-++..++|.---..+|+.||-.++|-.
T Consensus 238 L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~ 310 (439)
T KOG2911|consen 238 LIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQ 310 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444445 6777788776 334444332111 11334456677887788889999988777643
No 53
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=24.83 E-value=2.8e+02 Score=24.70 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=57.4
Q ss_pred CCCCChhhHHHhhhcchhhHHHhcCCch-----hhhh--ccCcchh--hHHHHH-----HhhhHHHHHHhhccCCCCCC-
Q psy4337 4 VAGVNFRKLQTCVKSKGPEILAQFGDRT-----DALE--GRKFVPT--IVIDDL-----DQFESEIESLLVGKKKRLDK- 68 (174)
Q Consensus 4 ~~~v~~~~i~~C~~s~G~eLLak~gd~T-----~al~--e~~~wL~--~~Id~L-----e~~EaEvEsL~~~kKkK~~~- 68 (174)
...+||.-++.|+. -++.+-+.++... .-+. .....-. ...+.| ..++.=++.+..+|++-|.+
T Consensus 77 ~l~in~~ll~~~~~-~~~~i~~~~~~~~~~~~~~lL~~~gVl~~~e~~e~~~~l~~~i~~al~~AL~~l~~~R~~EG~~L 155 (290)
T COG1561 77 ELEINEDLLKQLVT-LLKELAAQFDLAAELSLDDLLRLPGVLAIEEEEEDLEALEALILAALEEALDDLIEMREREGAAL 155 (290)
T ss_pred ceeeCHHHHHHHHH-HHHHHHHHcCccCCCCHHHHhCCcceeecccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999988 5666767776531 1110 1111111 223333 56666666665555555533
Q ss_pred --chhhhHHHHHHHHHH--------hHHHHHHHHHHHHhhhCCCCChhHH
Q psy4337 69 --DKQDRMDELKAKVER--------HRYHIRKLETLLRMLDNMSVEVDQI 108 (174)
Q Consensus 69 --~~~~r~~~l~~~ier--------hk~Hi~kLE~llR~L~N~~l~~e~v 108 (174)
.-..+++.++..++. .+||..+|..-+.-+. .+++|+.|
T Consensus 156 ~~~l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~-~~~d~~rl 204 (290)
T COG1561 156 KADLLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQ-DQLDEDRL 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHh-cccChHHH
Confidence 234566666666554 5566666665555444 56666544
No 54
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=24.70 E-value=1.5e+02 Score=21.51 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHHHHHH-HHHHHHhhhCCCCChhHHhhhhh
Q psy4337 75 DELKAKVERHRYHIRK-LETLLRMLDNMSVEVDQIRRIKD 113 (174)
Q Consensus 75 ~~l~~~ierhk~Hi~k-LE~llR~L~N~~l~~e~v~~ike 113 (174)
.-++..+++..-.+.+ ++.|-|+|.++.+.|+.+++++-
T Consensus 46 kvm~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~ 85 (93)
T cd00238 46 KVMEKILEKGEDYVEKELARLERLLEKKGLAPEKADELTR 85 (93)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3344455455555555 88888999998899999998764
No 55
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.56 E-value=3e+02 Score=23.09 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=19.9
Q ss_pred CCCCChhHHhhhhhHHHHHHhhCC
Q psy4337 100 NMSVEVDQIRRIKDDVEYYIESSQ 123 (174)
Q Consensus 100 N~~l~~e~v~~ikedieyYve~nq 123 (174)
|..++.++|++|.|+|.-.++...
T Consensus 118 ~k~i~id~Vd~l~Dei~E~~e~~~ 141 (211)
T PTZ00464 118 FKKLNVDKVEDLQDELADLYEDTQ 141 (211)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999987643
No 56
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=24.31 E-value=1.3e+02 Score=20.29 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=27.8
Q ss_pred HHHHhhhCCCCChhHHhhhhhHHHHHHhhCCCCCC
Q psy4337 93 TLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDF 127 (174)
Q Consensus 93 ~llR~L~N~~l~~e~v~~ikedieyYve~nqd~df 127 (174)
.|=..+++|.|..++-+.|+.-|+...+.....-|
T Consensus 23 ~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~qnGf 57 (59)
T PF10925_consen 23 IIDKYVEAGVITQEQADAIKKHIDQRQEYMQQNGF 57 (59)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677999999999999999999988776544444
No 57
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.39 E-value=3.7e+02 Score=21.05 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHhhhCC--CCChhHHhhhhhHHHHHHh
Q psy4337 73 RMDELKAKVERHRYHIRKLETLLRMLDNM--SVEVDQIRRIKDDVEYYIE 120 (174)
Q Consensus 73 r~~~l~~~ierhk~Hi~kLE~llR~L~N~--~l~~e~v~~ikedieyYve 120 (174)
..++|...|...+--+..|+.-|..|..+ .++|+++..+......|..
T Consensus 110 t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 110 TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 34556666666666677777666666554 5689999999888777754
No 58
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=22.76 E-value=2.8e+02 Score=23.38 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=35.5
Q ss_pred HhhhHHHHHHhhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhh
Q psy4337 49 DQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIES 121 (174)
Q Consensus 49 e~~EaEvEsL~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~ 121 (174)
+.+++-+++-++..++|+. ..-.-++-+-..+|..|+...|+.|+.+= .|..-.--++-+.|--|+..
T Consensus 121 e~y~~aleK~l~l~~~kk~--~~~~ea~~~l~~~R~~F~~~~ldYv~~i~---~vq~kKkfefle~ll~~~~A 188 (207)
T cd07634 121 EKYYSILEKHLNLSAKKKE--SHLQRADTQIDREHQNFYEASLEYVFKIQ---EVQEKKKFEFVEPLLAFLQG 188 (207)
T ss_pred hHHHHHHHHHHhccccCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3455555554333333321 11223333455678889999999999742 22333333455555555543
No 59
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.45 E-value=2.7e+02 Score=19.80 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHH
Q psy4337 70 KQDRMDELKAKVERHRYHIRKLETLL 95 (174)
Q Consensus 70 ~~~r~~~l~~~ierhk~Hi~kLE~ll 95 (174)
...++++|-...+|-.--|+.||.||
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 40 DEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777777777777766
No 60
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.03 E-value=1.8e+02 Score=25.03 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=32.4
Q ss_pred HhhhHHHHHH-hhccCCCCCCc-hhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhC
Q psy4337 49 DQFESEIESL-LVGKKKRLDKD-KQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESS 122 (174)
Q Consensus 49 e~~EaEvEsL-~~~kKkK~~~~-~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~n 122 (174)
++..+++|++ -..-|+|.++. ....+.+++..++.- ...|| -+=+...-..+.++|.-+--|++.+
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a-------~~~~k-~e~~Rf~~~k~~D~k~~~~~yae~~ 226 (243)
T cd07666 159 DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA-------NNALK-ADWERWKQNMQTDLRSAFTDMAENN 226 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888887 22222333221 233444444444433 22222 1111334556667777777777664
No 61
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.56 E-value=38 Score=31.62 Aligned_cols=28 Identities=46% Similarity=0.882 Sum_probs=24.6
Q ss_pred cchhhhhhcccCCCcccccccccccccc
Q psy4337 139 DDVEYYIESSQDIDFEENEYIYDDIEDE 166 (174)
Q Consensus 139 Lde~~~~~~~~~~~~~~~~~~y~d~~~~ 166 (174)
-|-.+|.+.++.|+|-+-+-||||+++|
T Consensus 172 ~di~yyve~~~~~df~e~~~~y~~~~~e 199 (548)
T COG5665 172 DDIKYYVENNDDPDFIEYDTIYEDMGCE 199 (548)
T ss_pred HHHHHHhhcCCCcchhhhhhHHHhhccc
Confidence 3457899999999999999999999855
No 62
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=21.21 E-value=2.9e+02 Score=23.24 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=45.3
Q ss_pred hccCcchhhHHHHH-----------HhhhHHHHHHhhcc-CCCCCCchhhhHHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q psy4337 35 EGRKFVPTIVIDDL-----------DQFESEIESLLVGK-KKRLDKDKQDRMDE--LKAKVERHRYHIRKLETLLRMLDN 100 (174)
Q Consensus 35 ~e~~~wL~~~Id~L-----------e~~EaEvEsL~~~k-KkK~~~~~~~r~~~--l~~~ierhk~Hi~kLE~llR~L~N 100 (174)
.|-..|+++-|... +.+++-+++.++.. |+|.. .+++ -.-...|+.|+...|+.|+.+-
T Consensus 96 ~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~-----~~eEA~~~L~~~r~~F~~~sLdYV~qi~-- 168 (207)
T cd07636 96 TPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKES-----QLHEADSQVDLVRQHFYEVSLEYVFKVQ-- 168 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 35566777777666 44555555555543 34432 3333 3444568889999999998743
Q ss_pred CCCChhHHhhhhhHHHHHHhh
Q psy4337 101 MSVEVDQIRRIKDDVEYYIES 121 (174)
Q Consensus 101 ~~l~~e~v~~ikedieyYve~ 121 (174)
.|..-.--+|-+.|--||..
T Consensus 169 -~vq~rKkfefle~llsfm~a 188 (207)
T cd07636 169 -EVQERKMFEFVEPLLAFLQG 188 (207)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 22333333455665555544
No 63
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.05 E-value=2.5e+02 Score=23.10 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCC
Q psy4337 75 DELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQD 124 (174)
Q Consensus 75 ~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd 124 (174)
+.++.+++--+-||.+||.|+..+....- ..+++.++-.|+..|.
T Consensus 42 a~~E~Hl~ET~~qi~rLe~Vfe~~g~~~~-----~~~cda~~giiaegq~ 86 (167)
T COG3685 42 AAIEKHLEETKGQIERLEQVFERLGKKAR-----RVTCDAMEGLIAEGQE 86 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccc-----cchHHHHHHHHHHHHH
Confidence 34455555557899999999998533211 1355555555555444
No 64
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.82 E-value=2.8e+02 Score=24.22 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHH
Q psy4337 70 KQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVE 116 (174)
Q Consensus 70 ~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedie 116 (174)
.+...++.+.++.|..-.-++||-.+|.| |..|.+++.-.+
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~~l------~~ev~~L~~r~~ 201 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLKKL------PGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc------hhHHHHHHHHHH
Confidence 35677888888888888889999988887 777777776544
No 65
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=20.59 E-value=1.4e+02 Score=25.96 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHhhh
Q psy4337 71 QDRMDELKAKVERHRYHIRKLETLLRMLD 99 (174)
Q Consensus 71 ~~r~~~l~~~ierhk~Hi~kLE~llR~L~ 99 (174)
...++.|..-..+|..|..+.-.-|+..-
T Consensus 59 ~~~i~~L~~E~~~h~~~~~~v~~~L~~~k 87 (298)
T PF11262_consen 59 KNLIDKLPEELKKHQEHVEKVKKRLQEEK 87 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666666677777776665555543
No 66
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=20.53 E-value=1.9e+02 Score=27.23 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhhHHHHHHhhCCCC
Q psy4337 72 DRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDI 125 (174)
Q Consensus 72 ~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ikedieyYve~nqd~ 125 (174)
.=++.|+.|+.-.+-||.+|- ++++.+.++++.+..++.++.++
T Consensus 115 ~~~esL~~W~~vl~~~i~~L~----------~~~e~~~e~~~kl~~~~q~Y~ep 158 (472)
T PF05783_consen 115 NIMESLEKWLSVLREHIEKLK----------SDPEEREELRQKLERQWQEYVEP 158 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------ccHHHHHHHHHHHHHHHHHhhhc
Confidence 358889999999999998872 36777788888887777655443
Done!