Query psy4337
Match_columns 174
No_of_seqs 129 out of 232
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 23:01:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4337.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4337hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b5dx1 a.8.3.3 (X:415-528) Al 52.4 12 0.00088 25.8 5.2 36 78-113 61-96 (114)
2 d2gyqa1 a.25.1.4 (A:1-160) Hyp 47.8 26 0.0019 25.1 6.7 53 72-124 44-98 (160)
3 d1vp7a_ a.7.13.1 (A:) Exonucle 38.7 11 0.00078 23.7 2.8 22 87-108 11-32 (68)
4 d2gs4a1 a.25.1.4 (A:3-161) Hyp 37.3 19 0.0014 25.9 4.4 50 74-123 39-91 (159)
5 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 27.1 34 0.0025 21.3 3.7 23 73-95 27-49 (67)
6 d2bbha1 d.328.1.1 (A:13-244) M 24.4 1.1E+02 0.0081 21.5 7.0 51 49-100 174-225 (232)
7 d2elba1 a.238.1.1 (A:6-273) DC 22.0 84 0.0061 22.7 5.9 19 79-97 162-180 (268)
8 d1urfa_ a.2.6.1 (A:) Protein k 16.9 88 0.0064 19.8 4.2 34 70-103 6-39 (81)
9 d1lrza1 a.2.7.4 (A:245-309) Me 16.7 1.1E+02 0.0081 18.5 5.9 50 43-92 3-57 (65)
10 d1i4da_ a.238.1.2 (A:) Arfapti 15.3 1.2E+02 0.0089 20.2 5.1 19 103-121 168-186 (200)
No 1
>d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}
Probab=52.41 E-value=12 Score=25.77 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhCCCCChhHHhhhhh
Q psy4337 78 KAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKD 113 (174)
Q Consensus 78 ~~~ierhk~Hi~kLE~llR~L~N~~l~~e~v~~ike 113 (174)
+...+|.+-|+.++-.+..+|.++.++..-+..+..
T Consensus 61 eYA~~R~~~Hl~rF~~L~~~l~~~~id~~~L~~~E~ 96 (114)
T d2b5dx1 61 QYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEW 96 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 667889999999999999999999999876666653
No 2
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=47.80 E-value=26 Score=25.12 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhhhCC--CCChhHHhhhhhHHHHHHhhCCC
Q psy4337 72 DRMDELKAKVERHRYHIRKLETLLRMLDNM--SVEVDQIRRIKDDVEYYIESSQD 124 (174)
Q Consensus 72 ~r~~~l~~~ierhk~Hi~kLE~llR~L~N~--~l~~e~v~~ikedieyYve~nqd 124 (174)
+=.+.++.+++--+-||.+||.|++.|.-. .+...-+..|-..-.-.+....+
T Consensus 44 eLk~~l~~H~~eT~~qi~rLe~i~~~lg~~p~~~~c~am~gli~e~~~~~~~~~~ 98 (160)
T d2gyqa1 44 DLSQGLTSHLEETQKQIERLDQVFKKLGQKPSGVNCPAIDGLIKEADETAGEIAD 98 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCCCHHHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHHhhcCC
Confidence 344556667777789999999999999765 23333445555555555555333
No 3
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=38.74 E-value=11 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhCCCCChhHH
Q psy4337 87 HIRKLETLLRMLDNMSVEVDQI 108 (174)
Q Consensus 87 Hi~kLE~llR~L~N~~l~~e~v 108 (174)
-+.+||.|++.|+++.+.-++.
T Consensus 11 ~l~~LE~IV~~LE~g~l~Lees 32 (68)
T d1vp7a_ 11 ALAELESLVSAMENGTLPLEQS 32 (68)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHH
Confidence 3578999999999999986544
No 4
>d2gs4a1 a.25.1.4 (A:3-161) Hypothetical protein YciF {Escherichia coli [TaxId: 562]}
Probab=37.33 E-value=19 Score=25.88 Aligned_cols=50 Identities=12% Similarity=0.272 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhh-hC-CC-CChhHHhhhhhHHHHHHhhCC
Q psy4337 74 MDELKAKVERHRYHIRKLETLLRML-DN-MS-VEVDQIRRIKDDVEYYIESSQ 123 (174)
Q Consensus 74 ~~~l~~~ierhk~Hi~kLE~llR~L-~N-~~-l~~e~v~~ikedieyYve~nq 123 (174)
.+.++.+++--+-||.+||.|++.+ +. -. ...+-+..|-..-.-.+....
T Consensus 39 k~~l~~H~~eT~~qi~rLe~i~~~~g~~~~~~~~c~am~Gli~e~~~~~~~~~ 91 (159)
T d2gs4a1 39 SQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIESTE 91 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCcHHHHHHHHHHHHHHhccC
Confidence 3445555556689999999999876 32 12 223456666555666665433
No 5
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.08 E-value=34 Score=21.31 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHH
Q psy4337 73 RMDELKAKVERHRYHIRKLETLL 95 (174)
Q Consensus 73 r~~~l~~~ierhk~Hi~kLE~ll 95 (174)
.+..++.-++|.|..|.+||+.+
T Consensus 27 sV~diE~eLerCk~~irrLeqel 49 (67)
T d1k1fa_ 27 SVGDIEQELERAKASIRRLEQEV 49 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHH
Confidence 35556666667777777766655
No 6
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.43 E-value=1.1e+02 Score=21.51 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=35.3
Q ss_pred HhhhHHHHHH-hhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHHHHHHhhhC
Q psy4337 49 DQFESEIESL-LVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDN 100 (174)
Q Consensus 49 e~~EaEvEsL-~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N 100 (174)
+.++.+++.| ...-. +..+....++..+++.+-+.|.++.-+.-++..|..
T Consensus 174 ~~l~~~id~lE~~v~~-~~~~~~l~~i~~lrr~l~~lrr~l~p~revl~~L~r 225 (232)
T d2bbha1 174 EKIDDEIDVLEEEVLE-RPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYR 225 (232)
T ss_dssp HHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888888888 22221 222234568999999999999999988888877754
No 7
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.95 E-value=84 Score=22.70 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=13.4
Q ss_pred HHHHHhHHHHHHHHHHHHh
Q psy4337 79 AKVERHRYHIRKLETLLRM 97 (174)
Q Consensus 79 ~~ierhk~Hi~kLE~llR~ 97 (174)
-...|.+||...++.+..+
T Consensus 162 l~~~r~~f~~~~~d~~~~l 180 (268)
T d2elba1 162 VYTSRKKQHQTMMHYFCAL 180 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456788888888877553
No 8
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.95 E-value=88 Score=19.79 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHhhhCCCC
Q psy4337 70 KQDRMDELKAKVERHRYHIRKLETLLRMLDNMSV 103 (174)
Q Consensus 70 ~~~r~~~l~~~ierhk~Hi~kLE~llR~L~N~~l 103 (174)
...|++.|+..+..-.--..=-|.++|++.++..
T Consensus 6 ~~~rl~~L~~~L~iE~kvkeGaEnm~k~~~~~~~ 39 (81)
T d1urfa_ 6 NLSRVAGLEKQLAIELKVKQGAENMIQTYSNGST 39 (81)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 3468999988888877777778899999988753
No 9
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=16.72 E-value=1.1e+02 Score=18.49 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=25.8
Q ss_pred hHHHHH----HhhhHHHHHH-hhccCCCCCCchhhhHHHHHHHHHHhHHHHHHHH
Q psy4337 43 IVIDDL----DQFESEIESL-LVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLE 92 (174)
Q Consensus 43 ~~Id~L----e~~EaEvEsL-~~~kKkK~~~~~~~r~~~l~~~ierhk~Hi~kLE 92 (174)
+.|..| +.++.+|..+ ..-.+.-.++....++.+|...++.+.--|..-+
T Consensus 3 eYl~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~ 57 (65)
T d1lrza1 3 EYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 6777777777 3332222222234456666666655554444433
No 10
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.33 E-value=1.2e+02 Score=20.16 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=12.7
Q ss_pred CChhHHhhhhhHHHHHHhh
Q psy4337 103 VEVDQIRRIKDDVEYYIES 121 (174)
Q Consensus 103 l~~e~v~~ikedieyYve~ 121 (174)
+....+..+..-+.-|++.
T Consensus 168 l~~~r~~~~~~~l~~~~~~ 186 (200)
T d1i4da_ 168 LEENKIKVMHKQLLLFHNA 186 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3456667777777777754
Done!