RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4337
         (174 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.3 bits (75), Expect = 0.040
 Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 49/205 (23%)

Query: 10  RKLQTCVKSKGPEILAQFGDRTDALEGR-KFVPTIVIDDLDQFESEIESLLVGKKKRLDK 68
            +L   + SK  E++ +F +  + L    KF+ + +  +  Q  S +  + + ++ RL  
Sbjct: 65  LRLFWTLLSKQEEMVQKFVE--EVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYN 121

Query: 69  DKQDRMDELKAKVERHRYHIRKLETLLRMLDN--------M-----SV---EVDQIRRIK 112
           D Q      K  V R +    KL   L  L          +     +    +V    +++
Sbjct: 122 DNQVFA---KYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 113 DDVE---YYI-----ESSQDI---------DFEENEYIYDDIEDDVEYYIESSQDID--- 152
             ++   +++      S + +           + N     D   +++  I S Q      
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 153 FEENEY-----IYDDIEDECFIAVF 172
            +   Y     +  ++++      F
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAF 262



 Score = 29.4 bits (65), Expect = 0.69
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 24/95 (25%)

Query: 77  LKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDD 136
           L+ K+           ++L  L                +++Y     D D  + E + + 
Sbjct: 503 LEQKIRHDSTAWNASGSILNTL--------------QQLKFYKPYICDND-PKYERLVNA 547

Query: 137 IED---DVEYYIESSQDID------FEENEYIYDD 162
           I D    +E  +  S+  D        E+E I+++
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582



 Score = 29.4 bits (65), Expect = 0.70
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 13/45 (28%)

Query: 125 IDFEENE--YIYDDI-EDDVEYYIESSQDIDFEENEYIYDDIEDE 166
           +DFE  E  Y Y DI     + +++   + D +       D++D 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVD---NFDCK-------DVQDM 41



 Score = 28.3 bits (62), Expect = 1.9
 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 64/196 (32%)

Query: 1   CAPVAGVNFRKLQTCVKSKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIESLLV 60
                    + L   V +  P  L+   +       R  + T      D +         
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESI-----RDGLATW-----DNW--------- 347

Query: 61  GKKKRLDKDKQDRM-----DELKAKVERHRYHIRKL----------ETLLRML-DNMSVE 104
              K ++ DK   +     + L+    R  +   +L            LL ++  ++   
Sbjct: 348 ---KHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 105 VDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDD---------------VEYY--IES 147
              +  + + +  Y  S  +   +E+      I  +               V++Y   ++
Sbjct: 403 DVMV--VVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 148 SQDIDF---EENEYIY 160
               D      ++Y Y
Sbjct: 459 FDSDDLIPPYLDQYFY 474


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.7 bits (74), Expect = 0.063
 Identities = 26/177 (14%), Positives = 60/177 (33%), Gaps = 49/177 (27%)

Query: 21  PEILAQF----GDRTDALEGRKFVPTIVIDDLDQFES------EIESLLVGKKKRLDKDK 70
            E++ +F        +  +  +F   ++   L +FE+      +I +L      +L ++ 
Sbjct: 58  AELVGKFLGYVSSLVEPSKVGQFDQ-VLNLCLTEFENCYLEGNDIHALAA----KLLQEN 112

Query: 71  QDRMDELKAKVERHRYHIRKLET----------LLRMLDNMSVEVDQIRRIKDDVEYYIE 120
              + + K ++ ++    R +            L R     +V     + +       I 
Sbjct: 113 DTTLVKTK-ELIKNYITARIMAKRPFDKKSNSALFR-----AVGEGNAQ-L-----VAIF 160

Query: 121 SSQ-DID--FEENEYIYDDIEDDVEYYIESSQDI------DFEENEYIYD---DIED 165
             Q + D  FEE   +Y      V   I+ S +          + E ++    +I +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217



 Score = 28.5 bits (63), Expect = 1.5
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 120  ESSQDIDFEEN--EYIYDDIEDDVEYYIESSQDIDFEENEYIYDDIEDECF 168
            E  + I   EN    I++ I D      +  ++I+     Y +   +    
Sbjct: 1679 EKGKRI--RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727


>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone
           demethylation, oxygenase, chromatin modification; HET:
           8XQ; 1.80A {Homo sapiens}
          Length = 332

 Score = 32.1 bits (72), Expect = 0.084
 Identities = 16/77 (20%), Positives = 31/77 (40%)

Query: 90  KLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQ 149
             +TL+      +VEV    +   D  + +  ++ I   E+   +  I    +Y   S Q
Sbjct: 57  STKTLVEASGEHTVEVRTQVQQPSDENWDLTGTRQIWPCESSRSHTTIAKYAQYQASSFQ 116

Query: 150 DIDFEENEYIYDDIEDE 166
           +   EE E   ++ E+ 
Sbjct: 117 ESLQEEKESEDEESEEP 133


>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
           inhibitor, lysine specific HI demethylase; HET: K0I;
           1.86A {Homo sapiens} PDB: 2xue_A*
          Length = 510

 Score = 31.4 bits (70), Expect = 0.14
 Identities = 16/77 (20%), Positives = 31/77 (40%)

Query: 90  KLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQ 149
             +TL+      +VEV    +   D  + +  ++ I   E+   +  I    +Y   S Q
Sbjct: 91  STKTLVEASGEHTVEVRTQVQQPSDENWDLTGTRQIWPCESSRSHTTIAKYAQYQASSFQ 150

Query: 150 DIDFEENEYIYDDIEDE 166
           +   EE E   ++ E+ 
Sbjct: 151 ESLQEEKESEDEESEEP 167


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.3 bits (67), Expect = 0.20
 Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 11/32 (34%)

Query: 82  ERHRYHIRKLETLLRML--D-------NMSVE 104
           E+    ++KL+  L++   D         ++E
Sbjct: 18  EKQA--LKKLQASLKLYADDSAPALAIKATME 47



 Score = 26.8 bits (58), Expect = 2.8
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 22/49 (44%)

Query: 8  NFRKLQTCVKSKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIE 56
            +KLQ  +K              D+       P + I      ++ +E
Sbjct: 21 ALKKLQASLKLYAD----------DS------APALAI------KATME 47


>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
           alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
           2e8z_A* 2e9b_A*
          Length = 718

 Score = 29.3 bits (66), Expect = 0.66
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 1/102 (0%)

Query: 62  KKKRLDKDKQDRMDELKAKVERHRYHIRKLE-TLLRMLDNMSVEVDQIRRIKDDVEYYIE 120
             +R  +   D M+ +   +   +  I      L   + +  + V +   ++   +Y   
Sbjct: 3   SIRRSFEAYVDDMNIITVLIPAEQKEIMTPPFRLETEITDFPLAVREEYSLEAKYKYVCV 62

Query: 121 SSQDIDFEENEYIYDDIEDDVEYYIESSQDIDFEENEYIYDD 162
           S   + F +   +        +  I +       ++E+ YD 
Sbjct: 63  SDHPVTFGKIHCVRASSGHKTDLQIGAVIRTAAFDDEFYYDG 104


>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
           oxidoreductase, competence, redox-active center; 1.40A
           {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
          Length = 202

 Score = 28.5 bits (64), Expect = 0.91
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 16/73 (21%)

Query: 4   VAGVNFRKLQTCVKSKGPEILAQFGDRTDALEGRKF----VPTIVID--------DLDQF 51
              +    L+  +        +Q     D+   +K      PTI ++        D D+ 
Sbjct: 128 TTKIKPETLKENLDK--ETFASQV--EKDSDLNQKMNIQATPTIYVNDKVIKNFADYDEI 183

Query: 52  ESEIESLLVGKKK 64
           +  IE  L GK +
Sbjct: 184 KETIEKELKGKLE 196


>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
            2, heavy meromyosin, essential light chain, motor
            protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
            PDB: 3j04_A 3dtp_B 3dtp_A
          Length = 1184

 Score = 28.6 bits (64), Expect = 1.1
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 17/122 (13%)

Query: 45   IDDLDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVE 104
              +L + +++ ES++   + RL K+++ R +  K K        RKLE     L      
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK--------RKLEGESSDLH----- 1073

Query: 105  VDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDFEENEYIYDDIE 164
             +QI  ++  +          + EE +     +ED+      + + I   E+     D++
Sbjct: 1074 -EQIAELQAQIAELKAQLAKKE-EELQAALARLEDETSQKNNALKKIRELESH--ISDLQ 1129

Query: 165  DE 166
            ++
Sbjct: 1130 ED 1131


>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
           TRI/dimethyllysine demethylase, oxidoredu structural
           protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
           PDB: 3avs_A*
          Length = 531

 Score = 28.7 bits (63), Expect = 1.1
 Identities = 16/77 (20%), Positives = 27/77 (35%)

Query: 90  KLETLLRMLDNMSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQ 149
             +TL+   +   VEV        D  +    ++ I   E+   +  I    +Y   S Q
Sbjct: 115 STKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWHCESNRSHTTIAKYAQYQASSFQ 174

Query: 150 DIDFEENEYIYDDIEDE 166
           +   EENE      +  
Sbjct: 175 ESLREENEKRSHHKDHS 191


>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
           enzyme, aminopeptidas manganese enzyme, protease,
           manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
           c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
           1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
           2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
           2bwu_A* 2bww_A* ...
          Length = 440

 Score = 28.4 bits (64), Expect = 1.4
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 47  DLDQFESEIESLLVGKKK-RLDKDKQDRMD-ELKAKVERHRYHIRKLETLLRMLDNMSVE 104
              +   ++  LL G       + +    D  + + +E+ R   R+  T    + +    
Sbjct: 109 AFSEINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPV 168

Query: 105 VDQIRRIKDDVE 116
           V ++R  K   E
Sbjct: 169 VHEMRLFKSPEE 180


>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
           iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
           {Methanosarcina barkeri}
          Length = 807

 Score = 28.2 bits (62), Expect = 1.5
 Identities = 15/123 (12%), Positives = 45/123 (36%), Gaps = 17/123 (13%)

Query: 44  VIDDLDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSV 103
           +    ++ + ++     G++  +    +  +   +   +     + K    +R  DN   
Sbjct: 666 IAKTYEEDKWKVYDARNGQEMPIPPAPEFLLTTAETW-QEAIPMMAKA--CIRPSDN--- 719

Query: 104 EVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDFEENEYIYDDI 163
                R IK  + +++E  +       +Y+     +D   ++ +  D+     E +  ++
Sbjct: 720 --SMGRAIK--LTHWMELHK-------KYLGGKEPEDWWKFVRTEADLPLATREALLKEL 768

Query: 164 EDE 166
           E E
Sbjct: 769 EKE 771


>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
           {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
           c.37.1.20
          Length = 854

 Score = 28.3 bits (64), Expect = 1.5
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 45  IDDLD----QFESEIESLL----VGKKKRLDK------DKQDRMDELKAKVERHRYHIRK 90
           ID L+    Q E E E+L        ++RL           + + +L+A+ ER R  +RK
Sbjct: 403 IDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRK 462

Query: 91  LETLLRMLDNMSVEVDQIRRIKD 113
           L      LD +  E++   R  D
Sbjct: 463 LREAQHRLDEVRREIELAERQYD 485


>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
           P3S ADP; 3.50A {Bacteroides fragilis}
          Length = 729

 Score = 27.6 bits (61), Expect = 2.3
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 60  VGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEV----DQIRRIKDDV 115
           +G+   +  D  DR          +R+  R   +       M        +Q+   K  V
Sbjct: 445 IGRIPEILLDTTDRNRTSPFAFTGNRFEFRAAGSSANCAAAMIAINAAMANQLNEFKASV 504

Query: 116 EYYIESSQDIDFEENEYIYDDIEDDVEYYIESSQDIDFEENEY 158
           +  +E     D      + +         I +S+ I FE + Y
Sbjct: 505 DKLMEEGIGKDEAIFRILKE--------NIIASELIRFEGDGY 539


>2x5q_A SSO1986; unknown function; 2.05A {Sulfolobus solfataricus}
          Length = 198

 Score = 26.4 bits (57), Expect = 4.2
 Identities = 20/110 (18%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 39  FVPTIVIDDLDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLR-- 96
           +V  I+I       +  + + +   K     K+D    +   +    ++    +  LR  
Sbjct: 80  YVKGILISGKILKGNHFKIIGIPSNKLYIIRKKDVHGNITFSLPIKNFNTGTYQVDLRDK 139

Query: 97  MLDNMSVEVDQIRRIKDDV--EYYIESSQDIDFEENEYIYDDIEDDVEYY 144
           +   +S++ D  + I D+V  + Y +    ++ E+ + +Y D+E+   YY
Sbjct: 140 VTSFVSLDRDVAKTIVDNVLAKIYAKIYNSLNKEQKDKLYRDVEEIFNYY 189


>2qe9_A Uncharacterized protein YIZA; DINB/YFIT-like putative
           metalloenzymes fold, structural GENO joint center for
           structural genomics, JCSG; HET: CIT; 1.90A {Bacillus
           subtilis}
          Length = 178

 Score = 26.1 bits (57), Expect = 5.6
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 3/103 (2%)

Query: 17  KSKGPEILAQFGDRTDALEGRKFVPTIVIDDLDQFESEIESLLVGKKKRLDKDKQDRMDE 76
           K       A +              T +ID L     +I+  LV      +       DE
Sbjct: 78  KEDIAVQFADYQTLNKVKSLSNTFRTEIIDVLQTHSDQIKDELV--SVPWETGVLYTRDE 135

Query: 77  LKAKVERHR-YHIRKLETLLRMLDNMSVEVDQIRRIKDDVEYY 118
           +   +  H  +HI +L    R L    V    I R    +  Y
Sbjct: 136 ILHHIIAHEIHHIGQLSVWARELKLSPVSASFIGRTLKPIHSY 178


>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
           activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
           c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
          Length = 888

 Score = 26.4 bits (59), Expect = 5.8
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 51  FESEIESLLVGKKK----RLDKDKQDRMDELKAKVERHRYHIRKL-ETLLRMLDNMSVEV 105
           F    E L   +       L+K +  R   L        + IR L E  +R  D   V+ 
Sbjct: 4   FAHLAEPLDPVQPGKKFFNLNKLEDSRYGRLP-------FSIRVLLEAAIRNCDEFLVKK 56

Query: 106 DQIRRIKD 113
             I  I  
Sbjct: 57  QDIENILH 64


>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; HET: SSA; 2.60A {Pyrococcus
           horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
          Length = 455

 Score = 26.0 bits (58), Expect = 7.4
 Identities = 19/100 (19%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 47  DLDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVD 106
           D+       E +     KR + +K   +DE+       R  ++++  L    + ++VE+ 
Sbjct: 3   DIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIG 62

Query: 107 QIRRIKDDVEYYIESSQDI--DFEENEYIYDDIEDDVEYY 144
           + R+  + V+  +  S++I     E E   ++++  ++YY
Sbjct: 63  KRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102


>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
           segregation, cell adhesion, kleisin, MIT cell cycle;
           HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
           c.37.1.12
          Length = 430

 Score = 26.2 bits (58), Expect = 7.7
 Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 45  IDDLDQFESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVE 104
           I +  +   E+++            +  R         R      + E L      +  +
Sbjct: 200 IKNRRRIHGELKTY--KSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQ 257

Query: 105 VDQIRR 110
             +I++
Sbjct: 258 FLKIKK 263


>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia
           coli} PDB: 2wz7_A
          Length = 83

 Score = 24.6 bits (53), Expect = 8.1
 Identities = 13/68 (19%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 46  DDLDQFESEIES---LLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMS 102
           D + Q E    +   LL   +++L  D Q  +D L+ +++ ++Y   +L  ++     + 
Sbjct: 6   DRVTQLERISNAHSQLLTQLQQQLS-DNQSDIDSLRGQIQENQY---QLNQVVERQKQIL 61

Query: 103 VEVDQIRR 110
           +++D +  
Sbjct: 62  LQIDSLSS 69


>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces
           cerevisiae} PDB: 4ejs_C
          Length = 280

 Score = 25.5 bits (55), Expect = 9.8
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 86  YHIRKLETLLRMLDN-MSVEVDQIRRIKDDVEYYIESSQDIDFEENEYIYDDIEDDVEYY 144
           +    +   L  L    + +V     +         S+  +   ENEY+Y + ++  + +
Sbjct: 219 FIKSMINLNLNPLKTGFAKDVTGSLHVCRGGAPIATSNTSLHVVENEYLYLNEKESTKLF 278


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0816    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,831,637
Number of extensions: 176308
Number of successful extensions: 757
Number of sequences better than 10.0: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 112
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)