RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4337
         (174 letters)



>d1ev7a_ c.52.1.9 (A:) Restriction endonuclease NaeI {Nocardia
           aerocolonigenes [TaxId: 68170]}
          Length = 302

 Score = 29.1 bits (65), Expect = 0.24
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 52  ESEIESLLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRI 111
               + +   K  R ++  Q R++EL  +V         + T+ +  D M       +R+
Sbjct: 170 GDVRDQIFSAKSSRGNQHGQARVNELFRRVHGRLIGRAVIATVAQQDDFM-------KRV 222

Query: 112 KDD 114
           +  
Sbjct: 223 RGS 225


>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite
           reductase subunit beta, DsrB {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 179

 Score = 26.5 bits (58), Expect = 1.3
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 5/86 (5%)

Query: 58  LLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRIKDDVEY 117
           ++V             +  +K  +E    +  K E L+  +D +  E     R  +    
Sbjct: 97  VVVPWVPNEPPRWPTLVKYVKQILEAWAANANKHERLIEWVDRIGWE-----RFFELTGL 151

Query: 118 YIESSQDIDFEENEYIYDDIEDDVEY 143
                   D+    Y Y +     ++
Sbjct: 152 EFTQHLIDDYRITPYFYSEFRASTQF 177


>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 388

 Score = 25.7 bits (56), Expect = 3.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 66  LDKDKQDRMDELKAKVERHRYHIR 89
           L+K   D ++ELK  V +HR + +
Sbjct: 363 LEKFSSDNLEELKEAVAKHRDYTK 386


>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
           {Bacillus subtilis [TaxId: 1423]}
          Length = 276

 Score = 24.9 bits (54), Expect = 6.5
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 67  DKDKQDRMDELKAKVERHRYHIRK---------LETLLRMLDNMSVEVDQIRRIKDDVEY 117
           D++  D M +LK  V ++ Y  +           +T  +  D  + + D +      ++Y
Sbjct: 42  DQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPN--TYLQY 99

Query: 118 YIESSQDIDFEENEYIY-DDIEDDVEYYIESSQDIDFEENEYIYDDIE 164
           Y+     +      +   +++ +  E +I S  D+   E      +I+
Sbjct: 100 YLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIK 147


>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
           halodurans [TaxId: 86665]}
          Length = 132

 Score = 24.1 bits (52), Expect = 7.2
 Identities = 5/31 (16%), Positives = 10/31 (32%)

Query: 62  KKKRLDKDKQDRMDELKAKVERHRYHIRKLE 92
            +          +DE +  +  H Y    L+
Sbjct: 89  VRNEETALIWKLVDEAEEWLNTHTYETPILK 119


>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 397

 Score = 24.6 bits (53), Expect = 7.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 66  LDKDKQDRMDELKAKVERHRYHIR 89
           L+K   D M+E+K + E +  H++
Sbjct: 372 LEKLGGDFMEEVKKRFEDYVNHVK 395


>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase
           (ATP-PRTase, HisG), catalytic domain {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 210

 Score = 24.2 bits (52), Expect = 8.0
 Identities = 7/29 (24%), Positives = 18/29 (62%)

Query: 54  EIESLLVGKKKRLDKDKQDRMDELKAKVE 82
           + E++L+ +     +D+ +  D+L A+V+
Sbjct: 176 DSEAVLIERAGTDGQDQTEARDQLVARVQ 204


>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 116

 Score = 23.8 bits (51), Expect = 9.2
 Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 8/54 (14%)

Query: 58  LLVGKKKRLDKDKQDRMDELKAKVERHRYHIRKLETLLRMLDNMSVEVDQIRRI 111
           L+ GK K       D   ++   V  +              +      + +R I
Sbjct: 23  LVSGKTKEFLFSPNDSASDIAKHVYDNWPM--------DWEEEQVSSPNILRLI 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,393
Number of extensions: 34440
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 45
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)