Query psy4339
Match_columns 303
No_of_seqs 373 out of 1211
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 23:03:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840|consensus 100.0 4.3E-29 9.2E-34 214.3 30.5 259 2-278 209-489 (508)
2 KOG1840|consensus 99.9 3.7E-25 8E-30 190.1 27.0 221 12-266 177-398 (508)
3 KOG4626|consensus 99.9 1.2E-23 2.5E-28 178.4 18.9 208 5-262 265-483 (966)
4 KOG4626|consensus 99.9 1.3E-23 2.9E-28 178.1 13.5 190 31-262 249-449 (966)
5 TIGR00990 3a0801s09 mitochondr 99.8 2.1E-17 4.5E-22 150.7 21.6 225 7-265 309-572 (615)
6 TIGR00990 3a0801s09 mitochondr 99.8 4.7E-17 1E-21 148.4 21.3 198 31-261 288-492 (615)
7 KOG1126|consensus 99.8 2.9E-18 6.2E-23 147.1 12.0 193 28-259 415-614 (638)
8 COG3063 PilF Tfp pilus assembl 99.7 3.2E-16 6.9E-21 118.6 15.8 195 31-262 32-233 (250)
9 KOG1126|consensus 99.7 6.5E-17 1.4E-21 138.9 12.0 216 15-262 335-583 (638)
10 KOG1130|consensus 99.7 1.1E-15 2.3E-20 124.8 18.2 221 5-269 108-349 (639)
11 TIGR02521 type_IV_pilW type IV 99.7 6.5E-15 1.4E-19 117.7 20.8 195 31-262 28-229 (234)
12 KOG1155|consensus 99.7 3.6E-15 7.9E-20 123.3 19.2 189 7-262 345-533 (559)
13 PRK11189 lipoprotein NlpI; Pro 99.7 1.4E-14 3E-19 120.0 22.1 211 8-262 42-262 (296)
14 TIGR02521 type_IV_pilW type IV 99.7 6.4E-15 1.4E-19 117.7 19.5 159 77-262 28-195 (234)
15 PRK12370 invasion protein regu 99.7 2.6E-15 5.6E-20 134.9 18.7 209 6-259 275-496 (553)
16 TIGR03302 OM_YfiO outer membra 99.7 2.7E-14 5.9E-19 114.8 21.2 179 30-262 29-229 (235)
17 PRK11788 tetratricopeptide rep 99.7 3.2E-14 7E-19 123.1 21.1 216 16-262 52-275 (389)
18 COG3063 PilF Tfp pilus assembl 99.6 2.6E-14 5.7E-19 108.3 16.6 154 8-206 51-204 (250)
19 KOG1125|consensus 99.6 2.1E-14 4.6E-19 121.9 17.0 194 3-262 296-525 (579)
20 PRK11788 tetratricopeptide rep 99.6 1.6E-13 3.5E-18 118.7 22.8 195 33-262 106-309 (389)
21 KOG1155|consensus 99.6 4.9E-14 1.1E-18 116.7 18.3 151 50-262 342-492 (559)
22 KOG1130|consensus 99.6 8.6E-14 1.9E-18 113.9 17.9 179 5-206 168-346 (639)
23 PRK15174 Vi polysaccharide exp 99.6 1.2E-13 2.5E-18 126.3 21.1 49 7-67 91-139 (656)
24 PF14938 SNAP: Soluble NSF att 99.6 6.2E-13 1.3E-17 109.4 22.9 210 10-261 2-221 (282)
25 PRK15174 Vi polysaccharide exp 99.6 1E-13 2.2E-18 126.8 20.1 180 49-262 188-378 (656)
26 PRK11447 cellulose synthase su 99.6 2.1E-13 4.6E-18 132.5 23.5 223 8-262 367-697 (1157)
27 PRK09782 bacteriophage N4 rece 99.6 8.5E-14 1.8E-18 130.7 19.3 186 37-262 545-738 (987)
28 PRK09782 bacteriophage N4 rece 99.6 1.5E-13 3.2E-18 129.1 20.5 185 37-262 512-703 (987)
29 PRK12370 invasion protein regu 99.6 1.6E-13 3.5E-18 123.3 20.1 204 8-262 320-532 (553)
30 PRK11447 cellulose synthase su 99.6 2E-13 4.3E-18 132.7 21.6 215 7-262 284-555 (1157)
31 KOG1173|consensus 99.6 2.5E-13 5.4E-18 115.1 16.7 200 9-262 292-516 (611)
32 TIGR02917 PEP_TPR_lipo putativ 99.6 5.3E-13 1.2E-17 127.0 20.7 116 133-258 771-893 (899)
33 KOG0547|consensus 99.5 1.6E-12 3.4E-17 108.6 19.6 197 31-266 357-568 (606)
34 TIGR02917 PEP_TPR_lipo putativ 99.5 8.3E-13 1.8E-17 125.7 20.8 215 6-260 479-727 (899)
35 PF13424 TPR_12: Tetratricopep 99.5 2E-13 4.4E-18 89.6 9.9 77 128-206 1-77 (78)
36 TIGR03302 OM_YfiO outer membra 99.5 9.5E-12 2.1E-16 100.0 20.6 171 6-204 47-232 (235)
37 PF13424 TPR_12: Tetratricopep 99.5 5.6E-13 1.2E-17 87.5 10.3 78 76-164 1-78 (78)
38 PF13429 TPR_15: Tetratricopep 99.5 2.7E-13 5.7E-18 111.9 10.4 216 15-257 24-269 (280)
39 KOG1129|consensus 99.5 3.7E-13 8E-18 107.1 10.4 189 35-262 257-455 (478)
40 KOG2003|consensus 99.5 1.1E-11 2.3E-16 103.1 19.1 210 16-262 436-686 (840)
41 COG2956 Predicted N-acetylgluc 99.5 2.8E-11 6E-16 96.4 20.0 215 17-262 53-275 (389)
42 PRK15359 type III secretion sy 99.4 3.7E-12 8E-17 93.8 13.4 112 57-206 12-123 (144)
43 PRK15359 type III secretion sy 99.4 4.5E-12 9.8E-17 93.3 13.8 125 12-185 13-137 (144)
44 KOG1173|consensus 99.4 3.6E-12 7.8E-17 108.2 13.9 208 15-262 260-481 (611)
45 PF14938 SNAP: Soluble NSF att 99.4 1.2E-10 2.5E-15 96.0 22.0 178 6-206 49-227 (282)
46 PRK11189 lipoprotein NlpI; Pro 99.4 3.3E-11 7.2E-16 99.9 18.4 161 6-206 78-267 (296)
47 KOG1941|consensus 99.4 2.5E-10 5.4E-15 92.4 19.9 198 31-270 80-281 (518)
48 PRK15179 Vi polysaccharide bio 99.3 1.1E-10 2.3E-15 106.2 18.9 127 77-257 83-209 (694)
49 PRK10049 pgaA outer membrane p 99.3 1.3E-10 2.8E-15 108.6 18.9 191 15-262 253-453 (765)
50 PRK15179 Vi polysaccharide bio 99.3 1.8E-10 4E-15 104.6 19.1 139 29-206 81-219 (694)
51 KOG2002|consensus 99.3 8.4E-10 1.8E-14 99.5 22.7 205 31-262 411-672 (1018)
52 KOG0548|consensus 99.3 1.2E-09 2.5E-14 92.7 21.7 198 5-262 237-453 (539)
53 KOG0547|consensus 99.3 1.9E-10 4.1E-15 96.4 16.7 164 33-262 325-488 (606)
54 KOG2002|consensus 99.3 4.6E-10 1E-14 101.1 19.7 212 15-262 252-479 (1018)
55 PRK10049 pgaA outer membrane p 99.3 1.1E-09 2.3E-14 102.5 22.3 214 8-262 65-336 (765)
56 cd05804 StaR_like StaR_like; a 99.3 5.2E-10 1.1E-14 95.6 18.0 171 33-262 42-212 (355)
57 CHL00033 ycf3 photosystem I as 99.3 4.6E-10 9.9E-15 85.2 15.6 139 15-173 15-154 (168)
58 PRK10370 formate-dependent nit 99.3 1.3E-10 2.7E-15 90.3 12.6 120 52-206 53-175 (198)
59 PRK15363 pathogenicity island 99.2 3.4E-10 7.3E-15 82.3 12.9 103 77-206 32-134 (157)
60 KOG1125|consensus 99.2 1.1E-10 2.4E-15 99.6 11.9 158 10-206 337-529 (579)
61 PRK15363 pathogenicity island 99.2 1.1E-09 2.3E-14 79.7 15.3 102 31-162 32-133 (157)
62 PRK04841 transcriptional regul 99.2 8.2E-09 1.8E-13 99.0 26.1 213 8-262 425-638 (903)
63 PRK04841 transcriptional regul 99.2 1.1E-08 2.3E-13 98.3 26.5 218 5-265 504-761 (903)
64 KOG2003|consensus 99.2 1.9E-09 4.1E-14 90.0 18.2 89 172-262 624-719 (840)
65 TIGR02552 LcrH_SycD type III s 99.2 3.4E-10 7.5E-15 82.6 12.5 104 76-206 13-116 (135)
66 PF13429 TPR_15: Tetratricopep 99.2 3.3E-10 7.2E-15 93.5 13.4 133 32-203 144-276 (280)
67 PRK10370 formate-dependent nit 99.2 3.2E-10 6.9E-15 88.0 12.2 118 102-262 51-170 (198)
68 CHL00033 ycf3 photosystem I as 99.2 8.8E-10 1.9E-14 83.7 14.2 134 50-206 11-144 (168)
69 PF13525 YfiO: Outer membrane 99.2 1.9E-08 4.2E-13 78.6 21.9 170 33-256 4-198 (203)
70 COG5010 TadD Flp pilus assembl 99.2 8.1E-10 1.8E-14 85.9 13.7 164 29-259 62-225 (257)
71 KOG0553|consensus 99.2 5.9E-10 1.3E-14 88.3 12.7 104 79-209 80-183 (304)
72 TIGR02552 LcrH_SycD type III s 99.2 2.2E-09 4.8E-14 78.3 14.6 103 30-162 13-115 (135)
73 KOG0553|consensus 99.2 6.2E-10 1.4E-14 88.2 12.1 122 32-192 79-200 (304)
74 COG2956 Predicted N-acetylgluc 99.2 1.6E-08 3.5E-13 80.9 19.9 212 16-262 86-309 (389)
75 PLN02789 farnesyltranstransfer 99.2 7.3E-09 1.6E-13 86.1 18.8 151 17-207 55-215 (320)
76 PRK10866 outer membrane biogen 99.1 2.9E-08 6.4E-13 79.5 21.3 176 33-262 31-238 (243)
77 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.2E-09 2.5E-14 77.8 11.9 105 81-206 3-107 (119)
78 KOG1941|consensus 99.1 5.5E-08 1.2E-12 79.1 22.2 210 6-257 136-352 (518)
79 KOG1129|consensus 99.1 9.2E-11 2E-15 93.7 6.4 165 17-221 274-438 (478)
80 PRK10747 putative protoheme IX 99.1 1.1E-08 2.3E-13 88.6 19.3 187 49-262 129-354 (398)
81 KOG2076|consensus 99.1 7.3E-09 1.6E-13 92.9 18.4 96 131-261 413-508 (895)
82 PRK02603 photosystem I assembl 99.1 1.3E-08 2.7E-13 77.6 17.3 117 28-171 29-152 (172)
83 KOG1839|consensus 99.1 1.6E-09 3.5E-14 100.8 14.5 201 49-283 943-1143(1236)
84 cd05804 StaR_like StaR_like; a 99.1 5.4E-09 1.2E-13 89.4 15.9 172 30-261 2-173 (355)
85 KOG1839|consensus 99.1 4.4E-09 9.6E-14 98.0 15.9 190 15-238 954-1143(1236)
86 KOG0624|consensus 99.1 2.1E-08 4.5E-13 81.0 17.4 126 128-262 185-368 (504)
87 PRK10747 putative protoheme IX 99.1 3.2E-08 6.9E-13 85.7 20.1 165 49-260 164-385 (398)
88 KOG0548|consensus 99.1 1.2E-08 2.7E-13 86.7 16.4 146 33-209 297-460 (539)
89 PF09976 TPR_21: Tetratricopep 99.1 3.8E-08 8.3E-13 72.7 17.1 123 50-202 23-145 (145)
90 PF13414 TPR_11: TPR repeat; P 99.0 1.7E-09 3.8E-14 68.9 8.0 66 132-206 3-69 (69)
91 TIGR00540 hemY_coli hemY prote 99.0 9.1E-08 2E-12 83.3 21.1 218 5-261 97-360 (409)
92 PRK02603 photosystem I assembl 99.0 4.9E-08 1.1E-12 74.4 17.1 109 74-206 29-144 (172)
93 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.2E-08 2.5E-13 72.6 12.4 104 35-162 3-106 (119)
94 PF12895 Apc3: Anaphase-promot 99.0 9.1E-09 2E-13 68.3 10.6 83 103-201 2-84 (84)
95 KOG0550|consensus 99.0 1.2E-08 2.6E-13 84.1 13.1 175 31-259 166-344 (486)
96 PF09976 TPR_21: Tetratricopep 99.0 7E-08 1.5E-12 71.3 16.1 120 102-260 23-142 (145)
97 PRK14574 hmsH outer membrane p 99.0 5.3E-08 1.1E-12 90.5 18.8 192 30-260 30-227 (822)
98 PLN02789 farnesyltranstransfer 99.0 1.3E-07 2.8E-12 78.7 19.3 136 32-206 35-173 (320)
99 PF12569 NARP1: NMDA receptor- 99.0 3.7E-07 8.1E-12 80.5 23.1 133 131-272 193-342 (517)
100 KOG0550|consensus 99.0 3.2E-08 6.8E-13 81.7 15.0 168 16-207 186-353 (486)
101 KOG4162|consensus 99.0 2.1E-07 4.5E-12 82.5 20.9 121 133-262 651-780 (799)
102 TIGR00540 hemY_coli hemY prote 99.0 8.4E-08 1.8E-12 83.5 18.4 201 15-265 169-400 (409)
103 KOG1174|consensus 99.0 4.8E-08 1E-12 80.7 15.2 158 50-262 312-498 (564)
104 PLN03088 SGT1, suppressor of 99.0 1.5E-08 3.3E-13 86.0 12.9 92 98-206 10-101 (356)
105 COG5010 TadD Flp pilus assembl 98.9 1.8E-08 3.9E-13 78.5 11.3 133 29-200 95-227 (257)
106 KOG2076|consensus 98.9 1.7E-07 3.7E-12 84.3 18.1 187 34-259 139-339 (895)
107 PLN03218 maturation of RBCL 1; 98.9 2.7E-07 5.9E-12 88.2 20.6 191 35-262 580-780 (1060)
108 PLN03088 SGT1, suppressor of 98.9 3.2E-08 6.9E-13 84.1 13.0 111 37-185 5-115 (356)
109 PF12688 TPR_5: Tetratrico pep 98.9 6.3E-08 1.4E-12 68.1 12.2 95 98-203 9-103 (120)
110 PLN03218 maturation of RBCL 1; 98.9 4.3E-07 9.3E-12 86.9 21.7 134 35-202 508-641 (1060)
111 KOG0624|consensus 98.9 3E-07 6.5E-12 74.5 17.3 200 27-262 31-250 (504)
112 KOG0543|consensus 98.9 9E-08 2E-12 79.3 14.7 124 98-257 216-346 (397)
113 PF12895 Apc3: Anaphase-promot 98.9 3.9E-08 8.5E-13 65.3 10.4 83 144-261 1-83 (84)
114 PF13525 YfiO: Outer membrane 98.9 3.7E-07 8E-12 71.4 17.5 149 80-259 5-164 (203)
115 PRK14574 hmsH outer membrane p 98.9 2.6E-07 5.6E-12 86.0 19.1 198 10-259 303-507 (822)
116 PRK10803 tol-pal system protei 98.9 6.1E-08 1.3E-12 78.3 13.2 95 101-206 154-248 (263)
117 cd00189 TPR Tetratricopeptide 98.9 3.3E-08 7.1E-13 66.7 10.0 92 98-206 8-99 (100)
118 PF12688 TPR_5: Tetratrico pep 98.9 1.3E-07 2.8E-12 66.6 12.7 99 134-262 3-102 (120)
119 PRK14720 transcript cleavage f 98.9 3.9E-07 8.5E-12 84.3 19.3 220 8-262 6-249 (906)
120 PRK10866 outer membrane biogen 98.9 6.3E-07 1.4E-11 71.9 18.3 175 6-200 46-237 (243)
121 KOG1585|consensus 98.9 9.2E-06 2E-10 63.0 23.4 157 28-206 25-181 (308)
122 PF13432 TPR_16: Tetratricopep 98.9 3.1E-08 6.7E-13 62.2 8.6 63 137-208 2-64 (65)
123 KOG1128|consensus 98.8 6.2E-08 1.3E-12 85.3 13.0 118 101-262 496-613 (777)
124 PF13414 TPR_11: TPR repeat; P 98.8 4.8E-08 1E-12 62.2 9.2 64 80-161 3-67 (69)
125 KOG2376|consensus 98.8 1.2E-06 2.6E-11 75.7 19.7 193 14-261 27-249 (652)
126 KOG1174|consensus 98.8 7.5E-07 1.6E-11 73.9 17.5 202 31-261 229-463 (564)
127 cd00189 TPR Tetratricopeptide 98.8 7.5E-08 1.6E-12 64.9 10.2 93 134-262 2-94 (100)
128 PLN03081 pentatricopeptide (PP 98.8 4.7E-07 1E-11 84.4 17.8 85 176-262 464-554 (697)
129 KOG2376|consensus 98.8 1.1E-06 2.3E-11 76.1 17.6 178 13-218 60-268 (652)
130 PRK10803 tol-pal system protei 98.8 4.6E-07 1E-11 73.2 14.7 105 35-162 143-247 (263)
131 PLN03081 pentatricopeptide (PP 98.7 9.1E-07 2E-11 82.5 17.8 143 16-202 276-418 (697)
132 KOG1156|consensus 98.7 1.4E-06 3E-11 76.1 17.2 208 15-262 23-245 (700)
133 KOG4234|consensus 98.7 7.4E-07 1.6E-11 66.8 13.3 97 98-206 103-199 (271)
134 PRK14720 transcript cleavage f 98.7 1.8E-06 3.8E-11 80.2 18.1 166 14-206 46-254 (906)
135 KOG3060|consensus 98.7 3.1E-05 6.8E-10 60.5 21.8 125 50-209 64-188 (289)
136 KOG1127|consensus 98.7 1E-06 2.3E-11 80.3 15.6 164 30-257 488-651 (1238)
137 KOG0543|consensus 98.7 1.2E-06 2.7E-11 72.7 14.7 143 33-206 207-357 (397)
138 PF04733 Coatomer_E: Coatomer 98.6 2.1E-07 4.5E-12 76.5 9.5 147 49-262 113-262 (290)
139 PLN03077 Protein ECB2; Provisi 98.6 7.5E-06 1.6E-10 78.3 21.3 150 98-262 562-717 (857)
140 KOG3785|consensus 98.6 2.6E-06 5.7E-11 69.5 15.2 216 15-261 38-310 (557)
141 KOG1585|consensus 98.6 2.6E-05 5.6E-10 60.6 19.7 174 8-206 47-221 (308)
142 PF13432 TPR_16: Tetratricopep 98.6 2.6E-07 5.5E-12 58.0 7.4 57 98-162 5-61 (65)
143 KOG1586|consensus 98.6 1.9E-05 4.2E-10 60.8 18.2 138 98-262 42-180 (288)
144 KOG4162|consensus 98.6 2.2E-06 4.7E-11 76.3 14.6 126 49-209 661-788 (799)
145 KOG3060|consensus 98.6 9.2E-06 2E-10 63.3 16.2 122 49-206 97-222 (289)
146 COG1729 Uncharacterized protei 98.6 6.6E-07 1.4E-11 70.8 10.1 98 98-206 149-246 (262)
147 KOG1128|consensus 98.6 1.3E-06 2.7E-11 77.3 12.7 122 98-262 458-580 (777)
148 KOG1156|consensus 98.6 3.8E-06 8.3E-11 73.4 15.4 122 50-206 19-140 (700)
149 PRK10153 DNA-binding transcrip 98.6 3.2E-06 7E-11 75.1 15.4 131 50-208 354-486 (517)
150 KOG1586|consensus 98.6 2E-05 4.4E-10 60.7 17.4 156 31-209 31-188 (288)
151 KOG4340|consensus 98.5 5.8E-06 1.3E-10 66.0 14.3 177 14-259 25-201 (459)
152 COG4783 Putative Zn-dependent 98.5 2.6E-06 5.7E-11 72.2 12.8 93 98-207 314-406 (484)
153 PF12569 NARP1: NMDA receptor- 98.5 3.1E-05 6.8E-10 68.6 19.7 59 173-259 193-251 (517)
154 KOG4555|consensus 98.5 2.7E-05 5.9E-10 54.4 15.0 96 98-206 51-146 (175)
155 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 7.2E-07 1.6E-11 75.7 8.9 72 127-204 70-141 (453)
156 PLN03077 Protein ECB2; Provisi 98.5 1.4E-05 3.1E-10 76.4 18.6 62 133-202 555-616 (857)
157 KOG0495|consensus 98.5 3.1E-05 6.8E-10 68.1 18.5 117 101-262 629-745 (913)
158 COG4783 Putative Zn-dependent 98.5 1.3E-05 2.7E-10 68.2 15.5 137 31-206 303-439 (484)
159 KOG0495|consensus 98.5 2.3E-05 4.9E-10 69.0 17.0 122 98-263 659-781 (913)
160 PRK15331 chaperone protein Sic 98.4 4.1E-06 8.9E-11 61.5 10.7 101 30-160 33-133 (165)
161 KOG4555|consensus 98.4 7.1E-06 1.5E-10 57.3 11.2 110 134-275 45-155 (175)
162 PRK10153 DNA-binding transcrip 98.4 4.5E-06 9.8E-11 74.2 12.9 126 4-162 354-483 (517)
163 KOG1127|consensus 98.4 2.1E-05 4.6E-10 72.1 16.9 173 30-259 522-694 (1238)
164 PF13374 TPR_10: Tetratricopep 98.4 5.6E-07 1.2E-11 50.9 4.7 41 132-172 2-42 (42)
165 PRK15331 chaperone protein Sic 98.4 3.6E-06 7.9E-11 61.7 9.6 101 77-204 34-134 (165)
166 COG1729 Uncharacterized protei 98.4 9E-06 1.9E-10 64.5 12.5 102 37-162 144-245 (262)
167 KOG3081|consensus 98.4 0.00017 3.8E-09 56.8 19.1 145 49-262 119-268 (299)
168 PRK11906 transcriptional regul 98.4 1.7E-05 3.6E-10 67.7 14.4 132 52-206 272-403 (458)
169 PF14559 TPR_19: Tetratricopep 98.4 1.3E-06 2.7E-11 55.3 5.8 56 143-207 2-57 (68)
170 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.7E-05 3.8E-10 67.6 14.1 114 49-200 180-293 (395)
171 PRK11906 transcriptional regul 98.4 2.1E-05 4.6E-10 67.1 14.4 154 6-200 272-432 (458)
172 PF13512 TPR_18: Tetratricopep 98.3 1.7E-05 3.6E-10 57.0 11.5 98 98-206 18-130 (142)
173 COG4105 ComL DNA uptake lipopr 98.3 0.00042 9.2E-09 54.7 20.1 175 34-262 34-230 (254)
174 PF13371 TPR_9: Tetratricopept 98.3 2.2E-06 4.7E-11 55.1 6.4 62 138-208 1-62 (73)
175 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.3E-05 2.9E-10 68.3 12.6 118 98-262 177-294 (395)
176 KOG2300|consensus 98.3 0.00051 1.1E-08 58.7 21.1 174 5-206 288-476 (629)
177 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 5.4E-06 1.2E-10 70.5 9.1 73 74-161 69-141 (453)
178 COG4235 Cytochrome c biogenesi 98.2 7.2E-05 1.6E-09 60.2 14.1 124 29-183 151-274 (287)
179 KOG4234|consensus 98.2 0.00012 2.6E-09 55.3 13.8 105 33-162 94-198 (271)
180 PF14559 TPR_19: Tetratricopep 98.2 6.7E-06 1.4E-10 51.9 6.4 54 101-162 2-55 (68)
181 PF04733 Coatomer_E: Coatomer 98.2 3.6E-05 7.9E-10 63.4 11.8 129 49-210 142-271 (290)
182 COG3071 HemY Uncharacterized e 98.2 0.0012 2.5E-08 55.2 20.0 100 134-262 265-388 (400)
183 COG4235 Cytochrome c biogenesi 98.2 0.00013 2.8E-09 58.8 14.1 104 76-206 152-258 (287)
184 PF13374 TPR_10: Tetratricopep 98.1 5.7E-06 1.2E-10 46.6 4.7 42 33-78 1-42 (42)
185 COG4785 NlpI Lipoprotein NlpI, 98.1 0.00014 3E-09 55.7 13.2 99 29-157 60-158 (297)
186 COG3071 HemY Uncharacterized e 98.1 0.0022 4.8E-08 53.5 21.0 187 49-262 129-354 (400)
187 PF13512 TPR_18: Tetratricopep 98.1 0.0001 2.3E-09 52.9 11.7 90 132-251 10-99 (142)
188 COG4700 Uncharacterized protei 98.1 0.00072 1.6E-08 50.6 16.1 123 98-262 97-220 (251)
189 KOG3785|consensus 98.1 0.00035 7.5E-09 57.5 15.5 173 50-249 34-232 (557)
190 KOG4648|consensus 98.1 2.3E-05 5E-10 63.8 8.8 105 98-219 105-209 (536)
191 PF13371 TPR_9: Tetratricopept 98.1 2.7E-05 5.8E-10 49.9 7.3 57 98-162 3-59 (73)
192 KOG2300|consensus 98.0 0.0034 7.4E-08 53.9 20.5 144 33-206 366-516 (629)
193 PF12968 DUF3856: Domain of Un 98.0 0.0019 4.1E-08 44.5 15.6 105 100-206 19-131 (144)
194 PF09986 DUF2225: Uncharacteri 98.0 0.00026 5.7E-09 55.5 12.4 104 101-206 88-196 (214)
195 PF10300 DUF3808: Protein of u 98.0 0.0023 5.1E-08 56.6 19.6 172 50-275 200-383 (468)
196 KOG4642|consensus 98.0 0.00014 2.9E-09 56.5 10.1 93 98-207 18-110 (284)
197 COG4105 ComL DNA uptake lipopr 97.9 0.0027 5.8E-08 50.3 17.5 172 5-198 47-227 (254)
198 KOG4340|consensus 97.9 0.0011 2.4E-08 53.3 15.4 187 28-258 72-263 (459)
199 PF12968 DUF3856: Domain of Un 97.9 0.0025 5.5E-08 43.9 15.4 123 33-167 6-135 (144)
200 KOG4648|consensus 97.9 0.00011 2.5E-09 59.9 9.7 96 37-162 100-195 (536)
201 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0047 1E-07 48.4 19.5 120 99-259 139-259 (291)
202 PF10345 Cohesin_load: Cohesin 97.9 0.019 4.1E-07 53.0 27.0 198 29-267 54-256 (608)
203 KOG3617|consensus 97.9 0.0061 1.3E-07 55.8 20.8 128 127-262 853-993 (1416)
204 KOG1464|consensus 97.9 0.0035 7.6E-08 49.9 17.2 210 8-262 43-258 (440)
205 KOG2796|consensus 97.9 0.0036 7.7E-08 49.6 16.7 139 36-206 179-317 (366)
206 KOG3616|consensus 97.9 0.0025 5.4E-08 57.5 17.6 181 49-257 672-903 (1636)
207 PF04184 ST7: ST7 protein; In 97.8 0.0015 3.2E-08 56.4 15.4 124 50-201 180-321 (539)
208 COG4785 NlpI Lipoprotein NlpI, 97.8 0.00069 1.5E-08 52.0 12.1 160 76-262 61-263 (297)
209 KOG3617|consensus 97.8 0.015 3.3E-07 53.3 22.0 206 32-262 856-1106(1416)
210 KOG4642|consensus 97.8 0.0003 6.5E-09 54.6 9.9 102 34-165 10-111 (284)
211 PF09986 DUF2225: Uncharacteri 97.8 0.00053 1.2E-08 53.8 11.6 99 6-119 91-194 (214)
212 KOG2796|consensus 97.8 0.0024 5.2E-08 50.6 14.7 99 98-206 185-283 (366)
213 COG2976 Uncharacterized protei 97.8 0.0087 1.9E-07 45.3 18.3 94 98-206 97-190 (207)
214 KOG1070|consensus 97.8 0.0049 1.1E-07 59.4 19.0 182 49-261 1469-1659(1710)
215 KOG2047|consensus 97.8 0.0052 1.1E-07 54.6 18.0 180 3-206 398-581 (835)
216 COG4700 Uncharacterized protei 97.8 0.0026 5.6E-08 47.7 13.7 137 33-206 88-224 (251)
217 COG2909 MalT ATP-dependent tra 97.7 0.021 4.6E-07 52.8 21.8 176 49-262 469-644 (894)
218 PF06552 TOM20_plant: Plant sp 97.7 0.0035 7.5E-08 46.9 13.9 94 54-163 7-104 (186)
219 PF06552 TOM20_plant: Plant sp 97.7 0.00088 1.9E-08 50.0 10.6 92 105-206 6-111 (186)
220 PF12862 Apc5: Anaphase-promot 97.7 0.0012 2.6E-08 44.6 10.6 81 101-183 9-90 (94)
221 PF13176 TPR_7: Tetratricopept 97.7 0.00012 2.7E-09 39.5 4.7 31 134-164 1-31 (36)
222 PF10300 DUF3808: Protein of u 97.7 0.0052 1.1E-07 54.5 17.4 124 53-206 248-378 (468)
223 PF00515 TPR_1: Tetratricopept 97.7 0.00012 2.7E-09 38.9 4.5 32 174-206 1-32 (34)
224 KOG0551|consensus 97.6 0.019 4.1E-07 47.1 17.8 105 79-206 80-184 (390)
225 PF10602 RPN7: 26S proteasome 97.6 0.0086 1.9E-07 45.6 15.4 129 57-205 15-143 (177)
226 KOG0545|consensus 97.6 0.0016 3.5E-08 50.9 11.2 100 98-206 186-295 (329)
227 PF07719 TPR_2: Tetratricopept 97.6 0.00019 4.1E-09 38.1 4.6 31 175-206 2-32 (34)
228 PF00515 TPR_1: Tetratricopept 97.6 0.00022 4.7E-09 37.9 4.7 30 133-162 2-31 (34)
229 PF03704 BTAD: Bacterial trans 97.6 0.015 3.3E-07 42.7 16.4 112 50-172 18-136 (146)
230 PF04184 ST7: ST7 protein; In 97.6 0.0048 1E-07 53.3 14.6 122 101-258 179-317 (539)
231 KOG2047|consensus 97.6 0.016 3.4E-07 51.7 17.9 219 12-262 367-612 (835)
232 PF10602 RPN7: 26S proteasome 97.6 0.013 2.9E-07 44.5 15.7 124 110-262 16-140 (177)
233 PF13176 TPR_7: Tetratricopept 97.5 0.00025 5.5E-09 38.3 4.4 30 176-206 1-30 (36)
234 PF08631 SPO22: Meiosis protei 97.5 0.041 8.9E-07 45.4 22.1 139 4-161 5-150 (278)
235 COG0457 NrfG FOG: TPR repeat [ 97.5 0.031 6.7E-07 43.7 20.7 165 34-259 59-225 (291)
236 KOG1915|consensus 97.4 0.07 1.5E-06 46.2 21.6 142 101-257 185-343 (677)
237 COG2909 MalT ATP-dependent tra 97.4 0.11 2.3E-06 48.4 21.4 176 8-206 474-649 (894)
238 PF07719 TPR_2: Tetratricopept 97.4 0.00059 1.3E-08 36.1 4.7 30 133-162 2-31 (34)
239 KOG0545|consensus 97.4 0.0077 1.7E-07 47.3 12.2 115 33-162 177-294 (329)
240 KOG0551|consensus 97.3 0.015 3.3E-07 47.6 14.2 105 32-163 79-184 (390)
241 KOG2610|consensus 97.3 0.0058 1.3E-07 50.2 11.8 143 29-202 132-274 (491)
242 PF13428 TPR_14: Tetratricopep 97.3 0.00043 9.3E-09 39.3 4.0 42 133-182 2-43 (44)
243 PF13428 TPR_14: Tetratricopep 97.3 0.00064 1.4E-08 38.6 4.7 31 175-206 2-32 (44)
244 PF12862 Apc5: Anaphase-promot 97.3 0.012 2.6E-07 39.7 11.6 80 50-141 10-90 (94)
245 PF03704 BTAD: Bacterial trans 97.3 0.021 4.5E-07 42.0 13.9 97 101-206 17-127 (146)
246 PF13431 TPR_17: Tetratricopep 97.3 0.00021 4.6E-09 37.9 2.2 32 113-152 2-33 (34)
247 PF13181 TPR_8: Tetratricopept 97.3 0.0009 1.9E-08 35.4 4.7 31 175-206 2-32 (34)
248 PF13431 TPR_17: Tetratricopep 97.2 0.00027 5.8E-09 37.6 2.1 24 234-257 11-34 (34)
249 PF13181 TPR_8: Tetratricopept 97.2 0.0011 2.4E-08 35.1 4.5 30 133-162 2-31 (34)
250 PF02259 FAT: FAT domain; Int 97.2 0.078 1.7E-06 45.2 18.3 147 13-185 123-303 (352)
251 KOG1915|consensus 97.2 0.13 2.8E-06 44.6 20.6 154 101-260 333-495 (677)
252 KOG2610|consensus 97.2 0.077 1.7E-06 43.9 16.3 146 101-259 114-270 (491)
253 KOG3081|consensus 97.1 0.025 5.4E-07 45.0 13.0 118 49-199 148-265 (299)
254 PF08631 SPO22: Meiosis protei 97.1 0.023 5E-07 46.8 13.7 140 49-205 4-151 (278)
255 KOG1464|consensus 97.1 0.097 2.1E-06 42.0 15.9 141 50-206 117-262 (440)
256 KOG3616|consensus 97.0 0.083 1.8E-06 48.2 16.6 150 98-257 669-845 (1636)
257 KOG1070|consensus 96.9 0.077 1.7E-06 51.7 16.2 160 7-207 1473-1632(1710)
258 PF00244 14-3-3: 14-3-3 protei 96.9 0.086 1.9E-06 42.2 14.5 108 56-163 89-200 (236)
259 PF13281 DUF4071: Domain of un 96.9 0.13 2.7E-06 43.9 16.0 151 33-206 178-336 (374)
260 KOG2471|consensus 96.8 0.0049 1.1E-07 53.1 7.2 129 34-185 240-380 (696)
261 PF13281 DUF4071: Domain of un 96.7 0.35 7.5E-06 41.3 19.9 177 34-262 141-331 (374)
262 KOG1550|consensus 96.6 0.38 8.3E-06 43.9 18.5 142 33-205 243-394 (552)
263 KOG2471|consensus 96.6 0.009 2E-07 51.5 7.2 111 98-210 248-370 (696)
264 COG2976 Uncharacterized protei 96.6 0.22 4.8E-06 37.9 19.4 131 98-262 39-186 (207)
265 KOG2053|consensus 96.5 0.31 6.8E-06 45.5 16.4 124 50-209 21-144 (932)
266 KOG2041|consensus 96.4 0.53 1.1E-05 43.0 17.2 55 51-115 747-821 (1189)
267 PF13174 TPR_6: Tetratricopept 96.4 0.0074 1.6E-07 31.4 3.9 30 176-206 2-31 (33)
268 PF11207 DUF2989: Protein of u 96.4 0.3 6.5E-06 37.6 14.2 85 141-257 115-199 (203)
269 PF05843 Suf: Suppressor of fo 96.3 0.23 5E-06 41.0 14.0 122 98-260 9-131 (280)
270 PF10579 Rapsyn_N: Rapsyn N-te 96.3 0.12 2.5E-06 33.0 9.2 64 137-206 11-74 (80)
271 smart00101 14_3_3 14-3-3 homol 96.3 0.43 9.4E-06 38.2 14.8 106 56-161 91-200 (244)
272 KOG1463|consensus 96.3 0.55 1.2E-05 39.0 16.0 151 35-206 49-199 (411)
273 PF13174 TPR_6: Tetratricopept 96.3 0.013 2.8E-07 30.4 4.3 29 134-162 2-30 (33)
274 PF10345 Cohesin_load: Cohesin 96.2 1 2.2E-05 41.8 24.5 165 6-206 5-170 (608)
275 PF05843 Suf: Suppressor of fo 96.2 0.097 2.1E-06 43.2 11.2 129 49-209 12-141 (280)
276 PF10516 SHNi-TPR: SHNi-TPR; 96.2 0.021 4.6E-07 31.0 4.7 35 133-167 2-36 (38)
277 PF10952 DUF2753: Protein of u 96.1 0.22 4.8E-06 34.7 10.5 99 135-234 4-115 (140)
278 KOG0376|consensus 96.1 0.016 3.6E-07 49.8 6.1 88 49-162 15-102 (476)
279 KOG0376|consensus 95.9 0.0074 1.6E-07 51.9 3.4 99 98-213 12-110 (476)
280 COG5159 RPN6 26S proteasome re 95.9 0.77 1.7E-05 37.3 17.1 172 14-206 18-196 (421)
281 PF11817 Foie-gras_1: Foie gra 95.8 0.36 7.7E-06 39.0 12.4 92 105-201 153-244 (247)
282 KOG4814|consensus 95.6 0.31 6.7E-06 43.9 11.9 98 98-206 362-459 (872)
283 PF02259 FAT: FAT domain; Int 95.6 1.2 2.6E-05 37.9 15.7 104 98-206 154-289 (352)
284 smart00028 TPR Tetratricopepti 95.5 0.03 6.6E-07 28.2 3.8 29 133-161 2-30 (34)
285 KOG1308|consensus 95.5 0.0019 4E-08 53.0 -1.6 89 101-206 125-213 (377)
286 KOG2041|consensus 95.5 0.93 2E-05 41.5 14.5 113 139-257 741-873 (1189)
287 smart00028 TPR Tetratricopepti 95.5 0.029 6.2E-07 28.3 3.6 31 175-206 2-32 (34)
288 KOG4507|consensus 95.5 0.04 8.6E-07 48.8 6.0 104 101-220 618-721 (886)
289 KOG2053|consensus 95.4 0.16 3.4E-06 47.3 10.0 90 101-207 20-109 (932)
290 PF10516 SHNi-TPR: SHNi-TPR; 95.3 0.058 1.3E-06 29.2 4.3 35 35-73 2-36 (38)
291 KOG0508|consensus 95.2 0.11 2.3E-06 44.9 7.6 147 31-190 242-395 (615)
292 PF14853 Fis1_TPR_C: Fis1 C-te 95.1 0.1 2.3E-06 30.7 5.3 34 175-209 2-35 (53)
293 PF04781 DUF627: Protein of un 94.9 0.81 1.8E-05 31.5 11.3 101 49-161 7-107 (111)
294 COG3898 Uncharacterized membra 94.9 2.2 4.8E-05 36.4 19.6 146 26-207 114-261 (531)
295 COG0790 FOG: TPR repeat, SEL1 94.8 1.9 4.2E-05 35.7 20.6 154 15-204 57-220 (292)
296 PF10579 Rapsyn_N: Rapsyn N-te 94.8 0.63 1.4E-05 29.8 10.3 68 37-123 9-76 (80)
297 PF04781 DUF627: Protein of un 94.7 0.59 1.3E-05 32.2 8.8 100 98-204 4-107 (111)
298 PF11207 DUF2989: Protein of u 94.7 0.24 5.2E-06 38.1 7.7 76 18-112 125-200 (203)
299 COG3118 Thioredoxin domain-con 94.7 0.52 1.1E-05 38.4 9.9 116 137-262 139-263 (304)
300 PRK13184 pknD serine/threonine 94.5 0.29 6.2E-06 47.0 9.3 109 98-214 483-591 (932)
301 KOG2114|consensus 94.4 3.8 8.2E-05 38.5 15.6 51 12-67 347-397 (933)
302 PF04910 Tcf25: Transcriptiona 94.3 3 6.6E-05 35.8 18.3 175 7-206 9-224 (360)
303 KOG1550|consensus 94.3 2.3 4.9E-05 38.9 14.4 153 7-202 264-424 (552)
304 KOG1308|consensus 94.2 0.01 2.2E-07 48.8 -0.5 87 50-162 126-212 (377)
305 COG0790 FOG: TPR repeat, SEL1 94.2 2.7 5.9E-05 34.8 16.8 119 50-203 53-183 (292)
306 KOG3364|consensus 93.9 0.64 1.4E-05 33.2 7.9 76 132-214 32-110 (149)
307 PF14853 Fis1_TPR_C: Fis1 C-te 93.8 0.79 1.7E-05 27.0 7.1 29 134-162 3-31 (53)
308 KOG2581|consensus 93.7 4.2 9.1E-05 34.9 16.6 156 34-209 124-281 (493)
309 COG3118 Thioredoxin domain-con 93.5 3.6 7.8E-05 33.8 15.7 95 49-161 145-265 (304)
310 PF09613 HrpB1_HrpK: Bacterial 93.4 1.5 3.2E-05 32.6 9.3 70 128-206 6-75 (160)
311 PF10255 Paf67: RNA polymerase 93.2 5.1 0.00011 34.8 13.7 67 98-164 130-196 (404)
312 PRK10941 hypothetical protein; 93.1 0.83 1.8E-05 37.3 8.6 71 131-210 180-250 (269)
313 KOG2561|consensus 93.1 2.5 5.4E-05 36.6 11.3 119 36-165 165-300 (568)
314 PF15015 NYD-SP12_N: Spermatog 93.0 2.9 6.3E-05 36.1 11.7 100 98-206 184-293 (569)
315 PF07721 TPR_4: Tetratricopept 93.0 0.17 3.7E-06 24.7 2.9 23 134-156 3-25 (26)
316 PF15015 NYD-SP12_N: Spermatog 92.9 5.7 0.00012 34.4 14.2 104 50-164 188-294 (569)
317 COG3898 Uncharacterized membra 92.9 5.5 0.00012 34.2 19.2 177 49-257 165-350 (531)
318 KOG0686|consensus 92.9 5.7 0.00012 34.2 13.4 105 79-202 149-256 (466)
319 PF07721 TPR_4: Tetratricopept 92.6 0.18 3.9E-06 24.6 2.7 24 176-200 3-26 (26)
320 KOG0686|consensus 92.6 6.2 0.00013 34.0 14.1 69 130-204 148-216 (466)
321 PF04190 DUF410: Protein of un 92.4 5.2 0.00011 32.6 13.7 61 136-199 53-114 (260)
322 PF00244 14-3-3: 14-3-3 protei 92.3 4.9 0.00011 32.2 20.7 59 148-206 142-200 (236)
323 PF10255 Paf67: RNA polymerase 92.1 0.3 6.4E-06 42.2 5.0 71 134-206 124-195 (404)
324 PF14561 TPR_20: Tetratricopep 92.1 0.98 2.1E-05 30.0 6.5 34 128-161 18-51 (90)
325 KOG0985|consensus 92.0 13 0.00027 36.3 16.9 73 135-208 1223-1312(1666)
326 KOG4507|consensus 92.0 1.7 3.6E-05 39.2 9.3 91 101-206 224-314 (886)
327 PF08424 NRDE-2: NRDE-2, neces 91.9 7 0.00015 33.0 17.2 130 6-162 45-184 (321)
328 KOG4814|consensus 91.6 11 0.00024 34.6 19.3 94 49-162 365-458 (872)
329 KOG3364|consensus 91.4 3.5 7.6E-05 29.6 8.8 71 79-162 31-101 (149)
330 KOG0508|consensus 91.1 3 6.5E-05 36.4 9.8 110 8-121 311-430 (615)
331 KOG0687|consensus 91.1 8.1 0.00018 32.3 15.2 131 56-206 82-212 (393)
332 COG5187 RPN7 26S proteasome re 91.1 7.6 0.00017 31.9 15.1 132 55-206 92-223 (412)
333 PF14561 TPR_20: Tetratricopep 90.8 2.8 6.1E-05 27.9 7.7 35 171-206 19-53 (90)
334 PRK10941 hypothetical protein; 90.5 4.1 9E-05 33.3 9.8 71 98-181 189-259 (269)
335 PRK13184 pknD serine/threonine 90.1 2.9 6.3E-05 40.5 9.9 86 111-206 533-622 (932)
336 PF10952 DUF2753: Protein of u 89.9 5.2 0.00011 28.2 9.5 68 98-165 9-83 (140)
337 KOG3783|consensus 89.9 14 0.00031 33.1 17.9 77 128-206 445-522 (546)
338 KOG3783|consensus 89.7 15 0.00032 33.0 18.9 73 169-262 444-517 (546)
339 KOG4014|consensus 89.7 7.5 0.00016 29.7 12.3 159 8-206 44-235 (248)
340 KOG1538|consensus 89.7 17 0.00036 33.6 15.0 58 138-200 709-772 (1081)
341 TIGR03504 FimV_Cterm FimV C-te 89.0 0.86 1.9E-05 25.6 3.4 25 136-160 3-27 (44)
342 PF09613 HrpB1_HrpK: Bacterial 88.9 7.9 0.00017 28.8 10.4 89 31-149 7-95 (160)
343 PF04053 Coatomer_WDAD: Coatom 88.9 13 0.00028 33.1 12.3 27 133-159 348-374 (443)
344 TIGR02561 HrpB1_HrpK type III 88.9 5.2 0.00011 29.3 8.1 69 129-206 7-75 (153)
345 PF08424 NRDE-2: NRDE-2, neces 88.5 14 0.00031 31.2 19.7 131 55-209 48-188 (321)
346 KOG3824|consensus 88.3 1.5 3.2E-05 36.1 5.7 64 134-206 118-181 (472)
347 PF12854 PPR_1: PPR repeat 88.1 1.2 2.7E-05 23.3 3.6 26 132-157 7-32 (34)
348 smart00101 14_3_3 14-3-3 homol 88.0 13 0.00027 30.0 19.9 99 108-206 91-202 (244)
349 cd02682 MIT_AAA_Arch MIT: doma 87.6 4.2 9.1E-05 25.9 6.3 35 132-166 6-40 (75)
350 TIGR03504 FimV_Cterm FimV C-te 87.6 1.3 2.8E-05 24.9 3.6 25 178-203 3-27 (44)
351 PF12309 KBP_C: KIF-1 binding 87.3 18 0.0004 31.2 17.2 149 51-206 137-340 (371)
352 PF07079 DUF1347: Protein of u 86.9 21 0.00046 31.4 18.8 53 186-266 473-525 (549)
353 PF10373 EST1_DNA_bind: Est1 D 86.7 2.2 4.9E-05 34.9 6.2 46 151-205 1-46 (278)
354 PF12309 KBP_C: KIF-1 binding 86.4 21 0.00045 30.9 18.2 154 8-164 140-341 (371)
355 KOG4563|consensus 86.3 3 6.5E-05 35.2 6.5 65 132-197 41-105 (400)
356 PF08626 TRAPPC9-Trs120: Trans 86.2 42 0.0009 34.2 17.1 163 33-206 241-476 (1185)
357 KOG3824|consensus 86.2 2.1 4.5E-05 35.4 5.4 56 99-162 125-180 (472)
358 COG3629 DnrI DNA-binding trans 86.1 18 0.00038 29.8 11.0 62 173-262 152-213 (280)
359 PF08311 Mad3_BUB1_I: Mad3/BUB 86.1 8.5 0.00019 27.4 8.1 86 104-202 40-126 (126)
360 PF05053 Menin: Menin; InterP 85.5 26 0.00056 31.8 12.0 55 107-164 296-350 (618)
361 cd02679 MIT_spastin MIT: domai 85.4 7.7 0.00017 25.0 6.9 24 101-124 19-42 (79)
362 PF08626 TRAPPC9-Trs120: Trans 85.2 47 0.001 33.9 15.3 44 98-143 250-293 (1185)
363 COG4976 Predicted methyltransf 85.0 1.3 2.9E-05 34.8 3.7 58 141-207 4-61 (287)
364 PF04053 Coatomer_WDAD: Coatom 85.0 15 0.00034 32.5 10.7 65 135-206 298-378 (443)
365 KOG4521|consensus 84.7 44 0.00096 33.2 17.4 132 34-192 920-1071(1480)
366 PF11817 Foie-gras_1: Foie gra 84.7 19 0.00042 29.0 22.1 87 147-257 153-239 (247)
367 COG5159 RPN6 26S proteasome re 84.4 22 0.00047 29.4 16.7 139 50-206 97-237 (421)
368 KOG1497|consensus 84.2 24 0.00051 29.6 18.2 109 130-262 101-211 (399)
369 PF01535 PPR: PPR repeat; Int 84.0 2 4.4E-05 21.3 3.2 27 134-160 2-28 (31)
370 COG3947 Response regulator con 83.9 9.9 0.00021 31.3 8.1 70 175-275 280-349 (361)
371 PF10373 EST1_DNA_bind: Est1 D 83.8 2.4 5.2E-05 34.7 5.1 61 109-185 1-61 (278)
372 KOG0687|consensus 83.3 26 0.00057 29.4 17.0 126 15-163 87-212 (393)
373 KOG0985|consensus 83.0 51 0.0011 32.5 16.3 127 133-273 1105-1260(1666)
374 PF08311 Mad3_BUB1_I: Mad3/BUB 82.8 15 0.00032 26.2 12.1 123 9-159 2-126 (126)
375 COG3947 Response regulator con 82.2 20 0.00043 29.7 9.2 68 98-173 287-354 (361)
376 KOG3807|consensus 82.0 30 0.00065 29.2 13.7 91 50-160 196-303 (556)
377 COG4649 Uncharacterized protei 82.0 20 0.00044 27.2 13.3 121 103-262 71-193 (221)
378 cd02679 MIT_spastin MIT: domai 81.9 11 0.00024 24.3 7.3 29 177-206 11-39 (79)
379 KOG4563|consensus 81.4 8.8 0.00019 32.5 7.2 58 98-155 49-106 (400)
380 KOG1463|consensus 81.3 32 0.0007 29.1 17.9 159 98-262 136-314 (411)
381 PF07720 TPR_3: Tetratricopept 81.1 6.5 0.00014 20.9 4.7 30 176-206 3-34 (36)
382 cd02680 MIT_calpain7_2 MIT: do 80.7 5.6 0.00012 25.4 4.7 20 187-206 18-37 (75)
383 KOG0890|consensus 80.6 88 0.0019 33.9 14.9 110 30-163 1666-1786(2382)
384 cd02681 MIT_calpain7_1 MIT: do 80.5 12 0.00027 23.9 8.1 22 101-122 17-38 (76)
385 PF04190 DUF410: Protein of un 80.3 31 0.00066 28.2 23.9 154 31-204 7-170 (260)
386 cd02680 MIT_calpain7_2 MIT: do 79.9 7.3 0.00016 24.8 5.0 22 101-122 17-38 (75)
387 PF07720 TPR_3: Tetratricopept 79.8 7.3 0.00016 20.7 4.7 23 134-156 3-25 (36)
388 TIGR00756 PPR pentatricopeptid 79.6 4.4 9.6E-05 20.5 3.6 27 134-160 2-28 (35)
389 PF13041 PPR_2: PPR repeat fam 79.3 5.4 0.00012 22.8 4.1 29 132-160 3-31 (50)
390 cd02682 MIT_AAA_Arch MIT: doma 79.1 14 0.0003 23.6 7.6 32 174-206 6-37 (75)
391 PF09311 Rab5-bind: Rabaptin-l 78.6 10 0.00022 29.0 6.5 49 125-173 133-181 (181)
392 PF04910 Tcf25: Transcriptiona 78.4 43 0.00094 28.9 18.7 135 51-203 7-167 (360)
393 PF09670 Cas_Cas02710: CRISPR- 78.3 45 0.00098 29.0 19.0 58 98-161 139-198 (379)
394 PF12739 TRAPPC-Trs85: ER-Golg 77.6 50 0.0011 29.1 17.5 162 98-262 216-397 (414)
395 COG3629 DnrI DNA-binding trans 77.6 39 0.00085 27.9 11.9 68 98-173 161-228 (280)
396 KOG0276|consensus 76.7 12 0.00027 34.0 7.1 48 101-161 648-695 (794)
397 KOG1310|consensus 76.6 34 0.00074 30.9 9.6 90 103-206 387-476 (758)
398 cd02681 MIT_calpain7_1 MIT: do 76.3 17 0.00038 23.2 8.2 30 135-164 9-38 (76)
399 COG5187 RPN7 26S proteasome re 75.9 44 0.00096 27.7 16.2 113 30-163 111-223 (412)
400 PF04212 MIT: MIT (microtubule 75.2 17 0.00037 22.5 7.1 31 135-165 8-38 (69)
401 KOG1310|consensus 75.2 30 0.00064 31.3 8.9 81 146-262 388-471 (758)
402 PF04212 MIT: MIT (microtubule 73.7 19 0.0004 22.3 7.6 30 176-206 7-36 (69)
403 TIGR02561 HrpB1_HrpK type III 73.5 34 0.00073 25.2 8.7 88 32-149 8-95 (153)
404 KOG4014|consensus 73.3 40 0.00086 25.9 10.5 64 102-185 85-155 (248)
405 PF05053 Menin: Menin; InterP 73.3 68 0.0015 29.3 10.7 75 33-122 276-350 (618)
406 KOG2114|consensus 73.3 90 0.0019 30.0 14.7 50 60-120 349-398 (933)
407 KOG2561|consensus 73.1 66 0.0014 28.4 16.8 117 86-206 162-298 (568)
408 COG3914 Spy Predicted O-linked 72.9 67 0.0014 29.4 10.6 115 72-211 60-178 (620)
409 KOG3807|consensus 72.8 58 0.0013 27.6 14.7 95 101-206 195-306 (556)
410 cd02678 MIT_VPS4 MIT: domain c 72.5 22 0.00047 22.6 8.2 23 101-123 17-39 (75)
411 cd02683 MIT_1 MIT: domain cont 71.6 24 0.00051 22.6 8.3 23 101-123 17-39 (77)
412 PF13812 PPR_3: Pentatricopept 71.4 11 0.00025 18.9 3.9 27 134-160 3-29 (34)
413 KOG1920|consensus 71.2 1.2E+02 0.0026 30.5 15.9 25 179-204 957-981 (1265)
414 PF09670 Cas_Cas02710: CRISPR- 71.2 70 0.0015 27.8 18.3 140 36-206 133-272 (379)
415 COG4976 Predicted methyltransf 70.1 8.3 0.00018 30.6 4.0 54 101-162 6-59 (287)
416 KOG1914|consensus 68.9 93 0.002 28.4 17.4 96 105-215 346-441 (656)
417 KOG2581|consensus 68.0 84 0.0018 27.5 15.2 136 101-262 137-274 (493)
418 PF12739 TRAPPC-Trs85: ER-Golg 67.9 87 0.0019 27.6 17.6 154 36-206 210-401 (414)
419 PF12753 Nro1: Nuclear pore co 67.8 23 0.0005 30.6 6.5 59 7-71 326-388 (404)
420 KOG4279|consensus 67.2 37 0.0008 32.1 8.0 140 50-206 255-397 (1226)
421 PF13041 PPR_2: PPR repeat fam 67.0 18 0.00038 20.5 4.3 29 175-204 4-32 (50)
422 KOG2396|consensus 67.0 97 0.0021 27.9 14.0 82 132-222 105-187 (568)
423 COG4649 Uncharacterized protei 65.9 58 0.0013 24.9 14.7 129 49-203 50-195 (221)
424 KOG1258|consensus 64.6 1.2E+02 0.0025 27.9 15.2 108 101-219 377-485 (577)
425 cd09034 BRO1_Alix_like Protein 64.4 90 0.002 26.6 15.2 125 78-206 109-282 (345)
426 PF09311 Rab5-bind: Rabaptin-l 64.3 26 0.00057 26.8 5.9 39 167-206 133-171 (181)
427 smart00671 SEL1 Sel1-like repe 64.0 18 0.00039 18.4 3.7 32 35-66 2-33 (36)
428 PF12753 Nro1: Nuclear pore co 63.5 33 0.00071 29.7 6.6 34 56-89 329-366 (404)
429 KOG2908|consensus 62.3 99 0.0021 26.3 19.2 63 141-206 84-146 (380)
430 cd02683 MIT_1 MIT: domain cont 62.3 39 0.00084 21.6 8.3 32 135-166 9-40 (77)
431 PF07163 Pex26: Pex26 protein; 61.7 92 0.002 25.8 10.6 84 49-156 94-182 (309)
432 KOG2422|consensus 59.8 1.4E+02 0.0031 27.4 17.7 178 7-206 253-450 (665)
433 PRK15180 Vi polysaccharide bio 57.5 65 0.0014 28.8 7.5 86 101-203 300-385 (831)
434 COG2912 Uncharacterized conser 56.7 93 0.002 25.5 7.8 57 98-162 189-245 (269)
435 smart00745 MIT Microtubule Int 56.6 48 0.001 20.9 8.3 31 136-166 12-42 (77)
436 PF02064 MAS20: MAS20 protein 55.9 30 0.00064 24.5 4.4 27 136-162 67-93 (121)
437 KOG1497|consensus 55.9 1.3E+02 0.0027 25.5 17.5 110 79-202 102-211 (399)
438 PHA02537 M terminase endonucle 55.0 1.1E+02 0.0024 24.5 9.7 102 101-206 94-209 (230)
439 cd02678 MIT_VPS4 MIT: domain c 54.3 53 0.0012 20.8 8.2 30 137-166 11-40 (75)
440 KOG4322|consensus 53.3 1.6E+02 0.0035 26.0 16.2 105 98-206 361-473 (482)
441 KOG0890|consensus 52.7 3.6E+02 0.0077 29.8 14.5 68 128-206 1666-1733(2382)
442 PRK15180 Vi polysaccharide bio 52.0 1.8E+02 0.0039 26.2 9.3 122 50-206 301-422 (831)
443 smart00745 MIT Microtubule Int 51.2 60 0.0013 20.5 8.8 24 49-72 19-42 (77)
444 COG2912 Uncharacterized conser 50.6 75 0.0016 26.1 6.4 66 132-206 181-246 (269)
445 COG3914 Spy Predicted O-linked 50.4 2.1E+02 0.0045 26.5 13.3 108 27-162 61-172 (620)
446 smart00777 Mad3_BUB1_I Mad3/BU 49.6 93 0.002 22.2 7.9 79 109-200 45-124 (125)
447 TIGR02710 CRISPR-associated pr 49.0 1.8E+02 0.0039 25.3 14.2 56 98-156 138-195 (380)
448 COG5600 Transcription-associat 48.9 1.8E+02 0.0039 25.2 8.7 100 103-207 143-252 (413)
449 KOG1920|consensus 48.6 3.1E+02 0.0067 27.9 20.8 67 135-203 955-1027(1265)
450 KOG0276|consensus 47.6 85 0.0018 29.0 6.8 30 176-206 668-697 (794)
451 KOG0546|consensus 47.6 35 0.00077 29.0 4.3 100 98-206 230-340 (372)
452 KOG2709|consensus 47.1 80 0.0017 27.6 6.3 32 133-164 23-54 (560)
453 KOG2908|consensus 46.9 1.8E+02 0.004 24.8 18.2 91 101-194 86-176 (380)
454 PHA02537 M terminase endonucle 43.6 1.7E+02 0.0037 23.5 8.2 104 49-164 94-210 (230)
455 PF08238 Sel1: Sel1 repeat; I 43.5 49 0.0011 17.2 4.4 27 134-160 3-36 (39)
456 TIGR02508 type_III_yscG type I 43.3 1.1E+02 0.0023 21.0 5.4 46 13-63 19-64 (115)
457 cd02656 MIT MIT: domain contai 42.7 85 0.0018 19.7 8.1 30 137-166 11-40 (75)
458 PF11846 DUF3366: Domain of un 42.4 1.5E+02 0.0033 22.6 7.4 56 144-206 120-175 (193)
459 KOG3677|consensus 41.7 2.5E+02 0.0054 24.8 12.4 95 98-206 243-338 (525)
460 cd02677 MIT_SNX15 MIT: domain 41.7 92 0.002 19.8 9.7 24 143-166 17-40 (75)
461 PF09205 DUF1955: Domain of un 40.9 1.4E+02 0.0031 21.7 8.0 31 173-204 119-149 (161)
462 PF10938 YfdX: YfdX protein; 40.2 1.5E+02 0.0033 22.0 8.4 105 99-204 11-146 (155)
463 TIGR00985 3a0801s04tom mitocho 40.1 1.5E+02 0.0033 21.9 7.6 27 136-162 94-121 (148)
464 KOG4322|consensus 40.1 2.7E+02 0.0058 24.7 21.2 104 98-206 281-384 (482)
465 PF02064 MAS20: MAS20 protein 40.0 64 0.0014 22.8 4.1 29 178-207 67-95 (121)
466 cd02684 MIT_2 MIT: domain cont 39.4 1E+02 0.0022 19.6 8.4 28 139-166 13-40 (75)
467 KOG1914|consensus 38.7 3.2E+02 0.0069 25.2 13.7 88 101-204 377-464 (656)
468 PF08969 USP8_dimer: USP8 dime 38.5 67 0.0015 22.3 4.1 34 132-165 38-71 (115)
469 PF07079 DUF1347: Protein of u 37.6 3.1E+02 0.0066 24.7 17.7 52 139-200 469-520 (549)
470 KOG2709|consensus 37.3 2.2E+02 0.0048 25.1 7.4 32 174-206 22-53 (560)
471 KOG0739|consensus 37.2 2.6E+02 0.0056 23.7 7.8 19 103-121 23-41 (439)
472 PF10858 DUF2659: Protein of u 35.5 2E+02 0.0042 21.8 13.6 96 101-203 104-199 (220)
473 KOG2034|consensus 35.3 1.3E+02 0.0027 29.2 6.2 56 98-164 366-421 (911)
474 COG1516 FliS Flagellin-specifi 34.1 1.8E+02 0.0039 21.0 7.0 28 138-165 37-64 (132)
475 cd09247 BRO1_Alix_like_2 Prote 34.0 3E+02 0.0066 23.6 15.4 125 78-206 111-284 (346)
476 KOG3024|consensus 33.8 2.8E+02 0.0061 23.1 12.0 22 236-257 127-148 (312)
477 KOG4279|consensus 33.2 1.6E+02 0.0035 28.2 6.5 96 98-206 209-318 (1226)
478 KOG4151|consensus 32.7 2.3E+02 0.005 27.1 7.4 108 98-218 61-170 (748)
479 KOG1258|consensus 32.7 4.1E+02 0.0088 24.6 18.9 114 49-196 308-421 (577)
480 KOG3024|consensus 32.6 2.9E+02 0.0064 23.0 13.8 46 153-200 107-152 (312)
481 smart00386 HAT HAT (Half-A-TPR 32.4 66 0.0014 15.5 3.9 17 146-162 1-17 (33)
482 cd09239 BRO1_HD-PTP_like Prote 32.0 3.4E+02 0.0073 23.5 13.2 43 78-121 112-154 (361)
483 PF10858 DUF2659: Protein of u 31.6 2.3E+02 0.005 21.5 12.8 101 137-263 98-198 (220)
484 KOG2063|consensus 30.6 5.4E+02 0.012 25.4 12.1 38 237-274 685-726 (877)
485 KOG0739|consensus 30.5 3.4E+02 0.0073 23.0 8.3 20 187-206 22-41 (439)
486 PRK14707 hypothetical protein; 30.1 8.1E+02 0.018 27.3 14.9 150 38-206 919-1072(2710)
487 COG3014 Uncharacterized protei 29.7 3.7E+02 0.008 23.2 14.0 139 109-262 40-221 (449)
488 PF11846 DUF3366: Domain of un 29.5 1.9E+02 0.0042 22.1 5.8 31 132-162 144-174 (193)
489 PF10366 Vps39_1: Vacuolar sor 29.3 69 0.0015 22.1 2.9 27 134-160 41-67 (108)
490 COG5600 Transcription-associat 29.3 3.9E+02 0.0084 23.3 9.9 98 8-122 146-252 (413)
491 PF07840 FadR_C: FadR C-termin 29.3 2.5E+02 0.0054 21.1 8.5 23 126-148 85-107 (164)
492 COG5290 IkappaB kinase complex 27.8 5.9E+02 0.013 24.9 16.5 21 4-24 824-844 (1243)
493 cd08977 SusD starch binding ou 27.8 2.3E+02 0.005 24.2 6.5 33 128-160 172-209 (359)
494 KOG4521|consensus 27.5 6.9E+02 0.015 25.7 14.8 22 98-119 928-949 (1480)
495 KOG2422|consensus 27.0 5.2E+02 0.011 24.1 14.3 109 101-210 249-378 (665)
496 KOG0546|consensus 26.5 91 0.002 26.7 3.5 104 35-161 223-338 (372)
497 PF03097 BRO1: BRO1-like domai 26.2 4.3E+02 0.0093 22.8 16.2 127 78-206 105-270 (377)
498 COG5091 SGT1 Suppressor of G2 26.1 1.6E+02 0.0034 24.3 4.6 62 101-164 50-111 (368)
499 KOG4056|consensus 26.0 1.8E+02 0.0038 21.2 4.4 27 136-162 85-111 (143)
500 COG5091 SGT1 Suppressor of G2 25.9 1.2E+02 0.0027 24.8 4.0 58 146-206 53-110 (368)
No 1
>KOG1840|consensus
Probab=99.97 E-value=4.3e-29 Score=214.28 Aligned_cols=259 Identities=23% Similarity=0.270 Sum_probs=231.6
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH
Q psy4339 2 RQKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS 81 (303)
Q Consensus 2 ~~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (303)
..-++-++.|+.+++.|+++.++..|.++|..+.....+|..| ..+++|++|+..|++|+.+.+..+|++||..+.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y----~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVY----RSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3456789999999999999999999999999999999999655 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 82 AHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 82 ~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
++.+|| .+|...|+|++|..++++|+++.++..+..++.+...+.+++.++..++++++|+.++++++++
T Consensus 285 ~l~nLa----------~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 285 TLNNLA----------VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHH----------HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 999999 7779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh-----hhhhhhhhhhhhhhH--------------
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN-----LKLFSASYSGLEYHY-------------- 222 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~l~~~~-------------- 222 (303)
....+|.+++.++..+.++|.+|. .+|++++|.+++++|+.+... ++.++..+++++..+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 999999999999999999999996 999999999999999999863 455666666664222
Q ss_pred HHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4339 223 RDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEWKILRETNELNEPE 278 (303)
Q Consensus 223 ~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 278 (303)
++. +.+|+++|++...+.+||.+|..+|++++|+++.+.+..|++. .++..+|
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~---~~~~~~~ 489 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ---RLGTASP 489 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---cCCCCCc
Confidence 221 6678999999999999999999999999999999888555544 4454444
No 2
>KOG1840|consensus
Probab=99.95 E-value=3.7e-25 Score=190.12 Aligned_cols=221 Identities=24% Similarity=0.302 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 91 (303)
.........+..+..+..+|....+..+||..| ..+|+|++|+..++.|+++..+..|.++|.++....++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y----~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a---- 248 (508)
T KOG1840|consen 177 IEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMY----AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILA---- 248 (508)
T ss_pred chhhHHHHHHHHHhcccCCchHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHH----
Confidence 344455566666777888999999999999766 799999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 92 EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 92 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
..|..++++++|+..|++|+.+.+...|+++|.++.++.+||..|...|+|++|..++++|++|.++..+..++
T Consensus 249 ------~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 249 ------LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred ------HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
.+...+.+++.++. .++++++|+.++++++++.. ..++..++.++..+.+||.+|..+|+
T Consensus 323 ~v~~~l~~~~~~~~-~~~~~Eea~~l~q~al~i~~-------------------~~~g~~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 323 EVAAQLSELAAILQ-SMNEYEEAKKLLQKALKIYL-------------------DAPGEDNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred HHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHH-------------------hhccccchHHHHHHHHHHHHHHHhcc
Confidence 99999999999998 99999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHH
Q psy4339 252 FEKMTEF-TNKLSEWK 266 (303)
Q Consensus 252 ~~~A~~~-~~~~~~~~ 266 (303)
+++|.++ .+++.+.+
T Consensus 383 ~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILR 398 (508)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999995 45554433
No 3
>KOG4626|consensus
Probab=99.92 E-value=1.2e-23 Score=178.41 Aligned_cols=208 Identities=22% Similarity=0.281 Sum_probs=179.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...+++|...|.+|+.+ .|..+.++.++|.+|| .+|..+-|++.|++++++ +|....+++
T Consensus 265 ~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYy----eqG~ldlAI~~Ykral~~--------~P~F~~Ay~ 324 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYY----EQGLLDLAIDTYKRALEL--------QPNFPDAYN 324 (966)
T ss_pred HhcchHHHHHHHHHHhc--------CCcchhhccceEEEEe----ccccHHHHHHHHHHHHhc--------CCCchHHHh
Confidence 35688999999999987 6778899999997774 999999999999999987 677889999
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
|+| +.+...|+..+|+.+|.+|+.+. |..+.+.+|||++|..+|.+++|..+|.++++..
T Consensus 325 Nla----------nALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-- 384 (966)
T KOG4626|consen 325 NLA----------NALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-- 384 (966)
T ss_pred HHH----------HHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--
Confidence 999 66689999999999999999973 4456788999999999999999999999999875
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHH-------HHhhh---cccccc
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYR-------DLKLF---SASYSG 234 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~-------a~~~~---~~~~~~ 234 (303)
|..+.+++|||.+|. .+|++++|+.+|++++.|.| .++.++++++.-++ |++.+ ..-.|.
T Consensus 385 ------p~~aaa~nNLa~i~k-qqgnl~~Ai~~YkealrI~P---~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 385 ------PEFAAAHNNLASIYK-QQGNLDDAIMCYKEALRIKP---TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred ------hhhhhhhhhHHHHHH-hcccHHHHHHHHHHHHhcCc---hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 888899999999998 99999999999999999987 77777877765553 33222 234778
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 235 LEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.+.+..+||.+|...|+..+|+. |.+++
T Consensus 455 ~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 455 FAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999999999999999999999 66666
No 4
>KOG4626|consensus
Probab=99.91 E-value=1.3e-23 Score=178.06 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|..+.++.+||++| ...+.|++|+.+|.+|+.. .|..+.++.|+| .+|..+|..+-|+
T Consensus 249 P~f~dAYiNLGnV~----ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla----------~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 249 PNFLDAYINLGNVY----KEARIFDRAVSCYLRALNL--------RPNHAVAHGNLA----------CIYYEQGLLDLAI 306 (966)
T ss_pred CcchHHHhhHHHHH----HHHhcchHHHHHHHHHHhc--------CCcchhhccceE----------EEEeccccHHHHH
Confidence 44444555555444 3445555555555554443 333344444444 5668888899999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
..|++|+++ +|....+++|||..+-..|+..+|+.+|.+|+.+. |..+.+++|||.+|. ++|+
T Consensus 307 ~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~-E~~~ 369 (966)
T KOG4626|consen 307 DTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYR-EQGK 369 (966)
T ss_pred HHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHH-Hhcc
Confidence 999998885 56677899999999999999999999999999876 556778999999998 9999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhh-------hhHHHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHH-HH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGLE-------YHYRDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTE-FT 259 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~-------~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~ 259 (303)
+++|..+|++++++.| .++.+.++|+ .+.+|+..+. .-.|..+.++.++|.+|..+|+...|+. |.
T Consensus 370 ~e~A~~ly~~al~v~p---~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 370 IEEATRLYLKALEVFP---EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred chHHHHHHHHHHhhCh---hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 9999999999999887 5555555554 4445553332 3367899999999999999999999999 55
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+++
T Consensus 447 rAI 449 (966)
T KOG4626|consen 447 RAI 449 (966)
T ss_pred HHH
Confidence 655
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=2.1e-17 Score=150.67 Aligned_cols=225 Identities=11% Similarity=-0.017 Sum_probs=131.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.++.|+..|+++++.. ...|..+.++..+|.++ ..+|++++|+..+++++++ +|.....+..+
T Consensus 309 ~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~----~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~l 371 (615)
T TIGR00990 309 SYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFK----CLKGKHLEALADLSKSIEL--------DPRVTQSYIKR 371 (615)
T ss_pred hHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHH
Confidence 5777888888877652 23455666666666554 4667777777777766654 23333344444
Q ss_pred HHHHHHHh--------------hh----------hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q psy4339 87 ALILEEIA--------------LD----------SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLY 142 (303)
Q Consensus 87 a~~~~~~~--------------~~----------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 142 (303)
|.++...+ +. ..++...|++++|+..|++++++ .|.....+.++|.++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHH
Confidence 42210000 00 04445556666666666666553 233344556666666
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhh-----
Q psy4339 143 QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSA----- 213 (303)
Q Consensus 143 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~----- 213 (303)
..+|++++|+..+++++... |....++..+|.++. .+|++++|+..|++++.+.++... +..
T Consensus 444 ~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLL-DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 66666666666666666542 344556777888886 888888888888888877664221 110
Q ss_pred --hhhhhhhhHHHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHHH
Q psy4339 214 --SYSGLEYHYRDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSEW 265 (303)
Q Consensus 214 --~~~~l~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~~ 265 (303)
.+...+.+.+|...+. ..+|....++..+|.++..+|++++|++++ +++.+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1111234444443221 234566667889999999999999999954 544443
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=4.7e-17 Score=148.37 Aligned_cols=198 Identities=15% Similarity=0.041 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
+.....+..+|...... ...++|++|+..|+++++.. ...|..+.++..+| .++...|++++|+
T Consensus 288 ~~~~~~~~~l~~~~~e~-~~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg----------~~~~~~g~~~eA~ 351 (615)
T TIGR00990 288 EETGNGQLQLGLKSPES-KADESYEEAARAFEKALDLG-----KLGEKEAIALNLRG----------TFKCLKGKHLEAL 351 (615)
T ss_pred cccccchHHHHHHHHHh-hhhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHH----------HHHHHcCCHHHHH
Confidence 33344444444433100 35689999999999999862 23567778899999 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
..+++++.+ +|....++..+|.++..+|++++|+.++++++++. |....++..+|.++. ..|+
T Consensus 352 ~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~lg~~~~-~~g~ 414 (615)
T TIGR00990 352 ADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--------SEDPDIYYHRAQLHF-IKGE 414 (615)
T ss_pred HHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HcCC
Confidence 999999985 45567789999999999999999999999998763 444567899999997 9999
Q ss_pred HHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+++|+.+|++++.+.|++. .++.++..++.+.+|+..+ ....|....++..+|.++...|++++|++.++.
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999988644 3455566666666665332 234567778899999999999999999995544
No 7
>KOG1126|consensus
Probab=99.77 E-value=2.9e-18 Score=147.11 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=168.1
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
..+|..+++|..+|+|+ .-+++++.|+++|++|+.+ +|..+.+|..+| .-+....++|
T Consensus 415 ~~~~~sPesWca~GNcf----SLQkdh~~Aik~f~RAiQl--------dp~faYayTLlG----------hE~~~~ee~d 472 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCF----SLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLG----------HESIATEEFD 472 (638)
T ss_pred hhCCCCcHHHHHhcchh----hhhhHHHHHHHHHHHhhcc--------CCccchhhhhcC----------ChhhhhHHHH
Confidence 45567788999999887 7999999999999999998 677788888889 7778999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
.|..+|++|+.. +|..-.+|+.+|.+|.++++++.|+-+|++|+++- |.....+..+|.++. .
T Consensus 473 ~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~-~ 535 (638)
T KOG1126|consen 473 KAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQH-Q 535 (638)
T ss_pred hHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHH-H
Confidence 999999999996 56778899999999999999999999999999873 777788999999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
.|+.++|+.++++|+.+.+.+|. -+..+..++...+|+ +.+..-.|+-..++..+|.+|...|+.+.|+..+
T Consensus 536 ~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 99999999999999999997763 455666677777776 4445567888889999999999999999999944
No 8
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=3.2e-16 Score=118.57 Aligned_cols=195 Identities=16% Similarity=0.112 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
...+.+...||.-| ...|++..|..-+++|++. +|....++..+| ..|...|+.+.|.
T Consensus 32 ~~aa~arlqLal~Y----L~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A----------~~Yq~~Ge~~~A~ 89 (250)
T COG3063 32 NEAAKARLQLALGY----LQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRA----------HYYQKLGENDLAD 89 (250)
T ss_pred HHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHH----------HHHHHcCChhhHH
Confidence 34677888899666 6999999999999999998 677778888888 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
+.|++|+.+ +|..+.+++|.|.+++.+|+|++|...|++|+.. +..+....++.|+|.|-. +.|+
T Consensus 90 e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal-~~gq 154 (250)
T COG3063 90 ESYRKALSL--------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCAL-KAGQ 154 (250)
T ss_pred HHHHHHHhc--------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHh-hcCC
Confidence 999999996 5667788999999999999999999999999864 566777889999999997 9999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhh----hhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGL----EYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l----~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++.|.++|++++.+.++.|.....+.++ +.+-.|. +.+....+..+.++.-...+-...|+.+.|.+|-..+
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999554332222222 1111221 2222222234444554555555666666666655444
No 9
>KOG1126|consensus
Probab=99.72 E-value=6.5e-17 Score=138.87 Aligned_cols=216 Identities=15% Similarity=0.068 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh-----------------------
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL----------------------- 71 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~----------------------- 71 (303)
+++|+..+.+ +...++.+..++..+|..| +.+++|++|..+|+.+-++..-.
T Consensus 335 ~~~A~~~~~k-lp~h~~nt~wvl~q~Gray----FEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEK-LPSHHYNTGWVLSQLGRAY----FELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHh-hHHhcCCchHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 5678888888 5666778889999999888 59999999999999876442111
Q ss_pred ---CCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH
Q psy4339 72 ---LPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF 148 (303)
Q Consensus 72 ---~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 148 (303)
+-..+|....++-.+| ++|.-+++++.|+++|++|+.+ +|..+.+|..+|.=+.....+
T Consensus 410 aq~Li~~~~~sPesWca~G----------NcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALG----------NCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHHHhhCCCCcHHHHHhc----------chhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHH
Confidence 1122333334455555 7889999999999999999996 567788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHH
Q psy4339 149 DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRD 224 (303)
Q Consensus 149 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a 224 (303)
|+|..+|++|+.+. |..-.+|+.+|.+|. ++++++.|.-.|++|++|.|.+. .++..+..++...+|
T Consensus 472 d~a~~~fr~Al~~~--------~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 472 DKAMKSFRKALGVD--------PRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred HhHHHHHHhhhcCC--------chhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence 99999999999764 666789999999998 99999999999999999999754 466777777777777
Q ss_pred Hhhhcc---ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 LKLFSA---SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+..+.. -+|......+..|.++...+++++|+..++.+
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 754432 25556667899999999999999999865554
No 10
>KOG1130|consensus
Probab=99.72 E-value=1.1e-15 Score=124.82 Aligned_cols=221 Identities=15% Similarity=0.124 Sum_probs=174.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc--------------------cHHHHHHHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG--------------------RFTESRRHAEKA 64 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g--------------------~~~~A~~~~~~a 64 (303)
+++++.|..++.+-+++.+++ .+......++++||++|. ..| .++.|.++|..-
T Consensus 108 ~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYh----akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYH----AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred hcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhh----hcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 578999999999999998876 344567789999998884 333 234466666666
Q ss_pred HHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 65 IQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
+++.++. .+......++.++| ++|+-.|+|+.|+...+.-+.+.++. .+....-.++.|+|+++.-
T Consensus 182 L~l~~~l--gDr~aqGRa~GnLG----------NTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 182 LELSEKL--GDRLAQGRAYGNLG----------NTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHh--hhHHhhcchhcccC----------ceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhh
Confidence 6665553 33344677888888 88899999999999999999998875 3445556789999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHH
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRD 224 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a 224 (303)
+|+++.|.++|+.++.+..+. .+....+...+.||..|. -..++.+|+.++.+-+.|..
T Consensus 248 lg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAq------------------ 306 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQ------------------ 306 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH------------------
Confidence 999999999999999888775 455667889999999996 89999999999999999988
Q ss_pred HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHHHHHHH
Q psy4339 225 LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSEWKILR 269 (303)
Q Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~~~~~~ 269 (303)
+. + +......+++.||..+...|..++|+.|. ..+....++.
T Consensus 307 -eL-~-DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~ 349 (639)
T KOG1130|consen 307 -EL-E-DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVN 349 (639)
T ss_pred -HH-H-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC
Confidence 32 2 22345678999999999999999999965 3444444433
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=6.5e-15 Score=117.68 Aligned_cols=195 Identities=16% Similarity=0.089 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
+..+..+..+|.++ ...|++++|+..++++++. +|....++..+| .++...|++++|+
T Consensus 28 ~~~~~~~~~la~~~----~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la----------~~~~~~~~~~~A~ 85 (234)
T TIGR02521 28 NKAAKIRVQLALGY----LEQGDLEVAKENLDKALEH--------DPDDYLAYLALA----------LYYQQLGELEKAE 85 (234)
T ss_pred CcHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHH----------HHHHHcCCHHHHH
Confidence 34566777777656 4777777777777777654 233445666666 5557777777777
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
..+++++... |.....+.++|.++...|++++|+.++++++... ..+.....+.++|.++. ..|+
T Consensus 86 ~~~~~al~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~-~~g~ 150 (234)
T TIGR02521 86 DSFRRALTLN--------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCAL-KAGD 150 (234)
T ss_pred HHHHHHHhhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHH-HcCC
Confidence 7777777641 2223456677777777777777777777776531 12333445667777775 7777
Q ss_pred HHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+++|..++++++...++++. .+..+...+.+.+|...+. ...|.....+..++.++...|+.++|..+.+.+
T Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777776664332 2233333333333321111 112334455667788888888888888766554
No 12
>KOG1155|consensus
Probab=99.70 E-value=3.6e-15 Score=123.25 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=151.1
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.=+.|+.+|++|+++ +|....++.-+|.-| ..+++...|+..|++|+++ +|.--.+++.+
T Consensus 345 eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEy----vEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGL 404 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKL--------NPKYLSAWTLMGHEY----VEMKNTHAAIESYRRAVDI--------NPRDYRAWYGL 404 (559)
T ss_pred hHHHHHHHHHHHHhc--------CcchhHHHHHhhHHH----HHhcccHHHHHHHHHHHhc--------CchhHHHHhhh
Confidence 346778888888877 677888888899766 6899999999999999988 45556788888
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| ..|...+...-|+-+|++|+.. .|.....+..||.||.+.++.++|+++|.+|+...
T Consensus 405 G----------QaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---- 462 (559)
T KOG1155|consen 405 G----------QAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---- 462 (559)
T ss_pred h----------HHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc----
Confidence 9 6667888888899999999885 23445567889999999999999999999998753
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHH
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVY 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~ 246 (303)
+ ....++..||.+|. ..++..+|..+|++.++... .-|...+.+..+..-||.-+
T Consensus 463 --d--te~~~l~~LakLye-~l~d~~eAa~~yek~v~~~~--------------------~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 463 --D--TEGSALVRLAKLYE-ELKDLNEAAQYYEKYVEVSE--------------------LEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred --c--cchHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHH--------------------hhcccchHHHHHHHHHHHHH
Confidence 1 13567889999998 99999999999999988654 33555666777788899999
Q ss_pred HhhhcHHHHHHHHHHH
Q psy4339 247 ECLENFEKMTEFTNKL 262 (303)
Q Consensus 247 ~~~g~~~~A~~~~~~~ 262 (303)
.+.+++++|..|...+
T Consensus 518 ~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLV 533 (559)
T ss_pred HhhcchHHHHHHHHHH
Confidence 9999999999865433
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=1.4e-14 Score=119.97 Aligned_cols=211 Identities=14% Similarity=-0.032 Sum_probs=148.9
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
.+.++..+.+++... ..+++..+..+..+|.++ ...|++++|+..|++++++ +|....+++++|
T Consensus 42 ~e~~i~~~~~~l~~~----~~~~~~~a~~~~~~g~~~----~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg 105 (296)
T PRK11189 42 QEVILARLNQILASR----DLTDEERAQLHYERGVLY----DSLGLRALARNDFSQALAL--------RPDMADAYNYLG 105 (296)
T ss_pred HHHHHHHHHHHHccc----cCCcHhhHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHH
Confidence 344444555544321 134456688999999766 6999999999999999987 456678899999
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++...|++++|+..|++++++ .|....++.++|.++...|++++|+..+++++++.
T Consensus 106 ----------~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----- 162 (296)
T PRK11189 106 ----------IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----- 162 (296)
T ss_pred ----------HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 6679999999999999999996 34556788999999999999999999999999864
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh-hhhhhhhhhhhhhhH--HHH----hhh---ccccccHHH
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN-LKLFSASYSGLEYHY--RDL----KLF---SASYSGLEY 237 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~l~~~~--~a~----~~~---~~~~~~~~~ 237 (303)
++++.. .. ...+.. ..+++++|+..+.++....+. ....+.....++... +++ +.+ ....|....
T Consensus 163 P~~~~~-~~---~~~l~~-~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~e 237 (296)
T PRK11189 163 PNDPYR-AL---WLYLAE-SKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCE 237 (296)
T ss_pred CCCHHH-HH---HHHHHH-ccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 444421 11 122344 678999999999887654321 111222222233221 122 111 112344667
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+++.+|.++...|++++|+.+++.+
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999999966544
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=6.4e-15 Score=117.73 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
+..+..+.++| ..+...|++++|+..++++++. .|....++..+|.++..+|++++|+.+++
T Consensus 28 ~~~~~~~~~la----------~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 89 (234)
T TIGR02521 28 NKAAKIRVQLA----------LGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFR 89 (234)
T ss_pred CcHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33567777888 6668889999999999888774 23445677788999999999999999998
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh--h----hhhhhhhhhhhhhHHHHhhh--
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN--L----KLFSASYSGLEYHYRDLKLF-- 228 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~--~----~~~~~~~~~l~~~~~a~~~~-- 228 (303)
++++.. |.....+.++|.++. ..|++++|+..+++++...+. . ..++.++...+.+.+|...+
T Consensus 90 ~al~~~--------~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 90 RALTLN--------PNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HHHhhC--------CCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888753 233456788888886 889999999999988874321 1 12333344444444443221
Q ss_pred -ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 -SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....|.....+..+|.++...|++++|..+++..
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 161 ALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223444566788889999999999988855444
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.69 E-value=2.6e-15 Score=134.87 Aligned_cols=209 Identities=12% Similarity=-0.091 Sum_probs=143.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhh-----hhcccHHHHHHHHHHHHHHHHhhCCcchhhhH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNE-----YSSGRFTESRRHAEKAIQTFKNLLPENHLLLT 80 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~-----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (303)
..++.|..+|++|+++ +|..+.++..+|.++.... ...+++++|+..+++++++ +|...
T Consensus 275 ~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~ 338 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNP 338 (553)
T ss_pred HHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCH
Confidence 3455566666666544 5666778888887653110 1235589999999999987 45556
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.++..+| .++...|++++|+..|++++++ .|....++..+|.++...|++++|+..++++++
T Consensus 339 ~a~~~lg----------~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 339 QALGLLG----------LINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHH----------HHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7788888 6668999999999999999996 345556789999999999999999999999998
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh-hhhhh----hhhhhhhhhhhHHHHh---hhcccc
Q psy4339 161 IKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN-DNLKL----FSASYSGLEYHYRDLK---LFSASY 232 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~-~~~~~----~~~~~~~l~~~~~a~~---~~~~~~ 232 (303)
+. +.++ .....++.++. ..|++++|+..+++++... +++|. .+.++..++...+|.. ......
T Consensus 401 l~-----P~~~---~~~~~~~~~~~-~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 401 LD-----PTRA---AAGITKLWITY-YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred cC-----CCCh---hhHHHHHHHHH-hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 74 3333 33445566674 7999999999999998764 33332 3444444455555542 223334
Q ss_pred ccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 233 SGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
|........++.+|...|+ +|...+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~--~a~~~l 496 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNSE--RALPTI 496 (553)
T ss_pred chhHHHHHHHHHHHhccHH--HHHHHH
Confidence 4444555666666666663 555533
No 16
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=2.7e-14 Score=114.78 Aligned_cols=179 Identities=17% Similarity=-0.004 Sum_probs=146.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.+..+..+..+|..+ ...|++++|+..+++++... ++++....++..+| .++...|++++|
T Consensus 29 ~~~~~~~~~~~g~~~----~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la----------~~~~~~~~~~~A 89 (235)
T TIGR03302 29 EEWPAEELYEEAKEA----LDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLA----------YAYYKSGDYAEA 89 (235)
T ss_pred ccCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHH----------HHHHhcCCHHHH
Confidence 345678999999887 59999999999999988762 44555667788899 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHHHHHhcCCCchHHHHH-----
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--------QKFDEAERMQLKAIAIKEKVLGKDDYEVGLS----- 176 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~----- 176 (303)
+..++++++.. ++++....++..+|.++... |++++|++.+++++... ++++....+
T Consensus 90 ~~~~~~~l~~~-----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~ 159 (235)
T TIGR03302 90 IAAADRFIRLH-----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMD 159 (235)
T ss_pred HHHHHHHHHHC-----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHH
Confidence 99999999864 45566666788999999876 89999999999998764 333322222
Q ss_pred ---------HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHH
Q psy4339 177 ---------VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 177 ---------~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 247 (303)
...+|.+|. ..|++.+|+..+++++...| ++|....++..+|.++.
T Consensus 160 ~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p------------------------~~~~~~~a~~~l~~~~~ 214 (235)
T TIGR03302 160 YLRNRLAGKELYVARFYL-KRGAYVAAINRFETVVENYP------------------------DTPATEEALARLVEAYL 214 (235)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHCC------------------------CCcchHHHHHHHHHHHH
Confidence 246788996 99999999999999998877 34667788999999999
Q ss_pred hhhcHHHHHHHHHHH
Q psy4339 248 CLENFEKMTEFTNKL 262 (303)
Q Consensus 248 ~~g~~~~A~~~~~~~ 262 (303)
..|++++|.++++.+
T Consensus 215 ~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 215 KLGLKDLAQDAAAVL 229 (235)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999987666
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.65 E-value=3.2e-14 Score=123.06 Aligned_cols=216 Identities=11% Similarity=0.043 Sum_probs=154.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
++|+..+++.+.. +|..+.++..+|.++ ...|++++|+..+++++.. ..........++..+|
T Consensus 52 ~~A~~~~~~al~~-~p~~~~~~~~la~~~----~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~~~~~La-------- 114 (389)
T PRK11788 52 DKAIDLFIEMLKV-DPETVELHLALGNLF----RRRGEVDRAIRIHQNLLSR----PDLTREQRLLALQELG-------- 114 (389)
T ss_pred HHHHHHHHHHHhc-CcccHHHHHHHHHHH----HHcCcHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHH--------
Confidence 3444444444332 466678899999766 6999999999999987763 1111222446778888
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 96 DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
..|...|++++|+..|.++++. .|....++..++.++...|++++|+..++++++.... +.......
T Consensus 115 --~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ 181 (389)
T PRK11788 115 --QDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SLRVEIAH 181 (389)
T ss_pred --HHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cchHHHHH
Confidence 7779999999999999998874 3344567889999999999999999999998765311 11223445
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhhc---ccccc-HHHHHHhHHHHHH
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLFS---ASYSG-LEYDYRGLIHVYE 247 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~~---~~~~~-~~~~~~~la~~~~ 247 (303)
.+..+|.++. ..|++++|+.+++++++..++.. .++..+...+...+|++.+. ...|. ...++..++.+|.
T Consensus 182 ~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 6778999997 99999999999999999877543 23444444555556653222 22233 3456788999999
Q ss_pred hhhcHHHHHHHHHHH
Q psy4339 248 CLENFEKMTEFTNKL 262 (303)
Q Consensus 248 ~~g~~~~A~~~~~~~ 262 (303)
..|++++|..+++.+
T Consensus 261 ~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 261 ALGDEAEGLEFLRRA 275 (389)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999966554
No 18
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.64 E-value=2.6e-14 Score=108.32 Aligned_cols=154 Identities=17% Similarity=0.052 Sum_probs=129.1
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
...|..-+++|++. +|....++..+|. +| ...|+.+.|.+.|++|+.+ +|..+.+++|.|
T Consensus 51 ~~~A~~nlekAL~~--------DPs~~~a~~~~A~-~Y---q~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG 110 (250)
T COG3063 51 YAQAKKNLEKALEH--------DPSYYLAHLVRAH-YY---QKLGENDLADESYRKALSL--------APNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHh--------CcccHHHHHHHHH-HH---HHcCChhhHHHHHHHHHhc--------CCCccchhhhhh
Confidence 44555666666655 6888889999995 54 7999999999999999998 677889999999
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
+. ++.+|++++|..+|++|+.. |..+....++.|+|.|-.++|+++.|.++|++++++.
T Consensus 111 ~F----------LC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d----- 169 (250)
T COG3063 111 AF----------LCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD----- 169 (250)
T ss_pred HH----------HHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-----
Confidence 44 49999999999999999984 6677788899999999999999999999999999875
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|........++.... ..|+|..|..++++-..-.+
T Consensus 170 ---p~~~~~~l~~a~~~~-~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 170 ---PQFPPALLELARLHY-KAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred ---cCCChHHHHHHHHHH-hcccchHHHHHHHHHHhccc
Confidence 334445678899995 99999999999987654433
No 19
>KOG1125|consensus
Probab=99.63 E-value=2.1e-14 Score=121.86 Aligned_cols=194 Identities=16% Similarity=0.068 Sum_probs=158.8
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHH
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSA 82 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (303)
.+.+.|.+|.-.|+.|++- +|..+++|..||.+. ...++-..|+..+++++++ +|....+
T Consensus 296 m~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~q----aENE~E~~ai~AL~rcl~L--------dP~Nlea 355 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQ----AENENEQNAISALRRCLEL--------DPTNLEA 355 (579)
T ss_pred HhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHh----hhccchHHHHHHHHHHHhc--------CCccHHH
Confidence 4566678888888887654 799999999999877 6888888999999999998 6676788
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH-----------hhC----------------------CCcH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLK-----------HFG----------------------ENNV 129 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~----------------------~~~~ 129 (303)
+..|| .+|...|.-.+|+.++.+-+..... ..+ ...|
T Consensus 356 LmaLA----------VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 356 LMALA----------VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred HHHHH----------HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 88899 6668888888888888887654210 000 0011
Q ss_pred --HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 130 --QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 130 --~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
....++..||.+|...|+|++|+.+|+.|+... |.....|+.||..+. .-.+.++|+..|++|+++.|
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP- 495 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQP- 495 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCC-
Confidence 234567789999999999999999999999753 777889999999998 88999999999999999988
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 208 LKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 208 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.+++++++||..+...|.|++|.+ ++.++
T Consensus 496 --------------------------~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 496 --------------------------GYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred --------------------------CeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 778889999999999999999999 66776
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.63 E-value=1.6e-13 Score=118.72 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
...++..+|.++ ...|++++|+..|.++++. +|....++..++ .++...|++++|++.
T Consensus 106 ~~~~~~~La~~~----~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la----------~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 106 RLLALQELGQDY----LKAGLLDRAEELFLQLVDE--------GDFAEGALQQLL----------EIYQQEKDWQKAIDV 163 (389)
T ss_pred HHHHHHHHHHHH----HHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHH----------HHHHHhchHHHHHHH
Confidence 456789999777 5999999999999998764 333456677788 667999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
+++++..... .........+..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|+++
T Consensus 164 ~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~~g~~~ 231 (389)
T PRK11788 164 AERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRASILLGDLAL-AQGDYA 231 (389)
T ss_pred HHHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHHHHHHHHHHH-HCCCHH
Confidence 9998875321 1122345567889999999999999999999998753 344567889999997 999999
Q ss_pred HHHHHHHHHHHhhhhhh-----hhhhhhhhhhhhHHHHhh---hccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 193 KAEKLYFRSIEINDNLK-----LFSASYSGLEYHYRDLKL---FSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~-----~~~~~~~~l~~~~~a~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
+|+..+++++...+++. .++..+...+...+|... .....|+.. ....+|.++...|++++|...+ +.+
T Consensus 232 ~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 232 AAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998766431 234445555555555422 222244433 3478999999999999999955 444
No 21
>KOG1155|consensus
Probab=99.63 E-value=4.9e-14 Score=116.70 Aligned_cols=151 Identities=18% Similarity=0.172 Sum_probs=87.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++.++|+.+|++|+++ +|....++..+| .-|...++...|++.|++|+++ .|
T Consensus 342 lr~eHEKAv~YFkRALkL--------Np~~~~aWTLmG----------HEyvEmKNt~AAi~sYRrAvdi--------~p 395 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKL--------NPKYLSAWTLMG----------HEYVEMKNTHAAIESYRRAVDI--------NP 395 (559)
T ss_pred HHHhHHHHHHHHHHHHhc--------CcchhHHHHHhh----------HHHHHhcccHHHHHHHHHHHhc--------Cc
Confidence 344555555555555554 344444555555 4445555555555555555554 23
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
..-.+++.||..|..++-..=|+-+|++|+... |.....|..||.+|. ++++.++|+.+|.+++....
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~-kl~~~~eAiKCykrai~~~d--- 463 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--------PNDSRLWVALGECYE-KLNRLEEAIKCYKRAILLGD--- 463 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHH-HhccHHHHHHHHHHHHhccc---
Confidence 334455555555555555555555555555432 222334555555555 55555555555555554433
Q ss_pred hhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 210 LFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 210 ~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....++..||.+|...++..+|..++++.
T Consensus 464 ------------------------te~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 464 ------------------------TEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred ------------------------cchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 24467899999999999999999966544
No 22
>KOG1130|consensus
Probab=99.61 E-value=8.6e-14 Score=113.86 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=154.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
+.+|++|.++|.+-+++.++. .+......++.+||+.|| -.|+|+.|+.+.+.-+.+.++. .+......++.
T Consensus 168 ~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyY----lLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~s 239 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYY----LLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHS 239 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceee----eeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhc
Confidence 457899999999999998775 344567789999999996 8999999999999999998774 33444668899
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
|+| +++...|+++.|.++|++.+.+..++ .+....+...+.||+.|.-..++++|+.|+++-+.|.+.
T Consensus 240 Nlg----------N~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 240 NLG----------NCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred ccc----------hhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 88899999999999999999988776 345566778889999999999999999999999999877
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
. .+......+++.||.++. .+|..++|..+.++.+.+..
T Consensus 308 L--~DriGe~RacwSLgna~~-alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 308 L--EDRIGELRACWSLGNAFN-ALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred H--HHhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHH
Confidence 6 455566788999999998 99999999999999998877
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.61 E-value=1.2e-13 Score=126.33 Aligned_cols=49 Identities=16% Similarity=0.033 Sum_probs=34.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQT 67 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~ 67 (303)
.++.|+..|+++++. +|..+.++..+|.++ ...|++++|+..+++++.+
T Consensus 91 ~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l----~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 91 QPDAVLQVVNKLLAV--------NVCQPEDVLLVASVL----LKSKQYATVADLAEQAWLA 139 (656)
T ss_pred CHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh
Confidence 344555555555544 455567788888776 5889999999999988876
No 24
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.61 E-value=6.2e-13 Score=109.39 Aligned_cols=210 Identities=15% Similarity=0.091 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHH------hCC---CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhH
Q psy4339 10 NLSLCSQLALKLKQVL------FGS---ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLT 80 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~------~~~---~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (303)
.|.++..+|-+..+.. ++. +....+..+..-|++| ...|+|++|...|.++.+...+. .+....+
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~f----k~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa 75 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCF----KLAKDWEKAAEAYEKAADCYEKL--GDKFEAA 75 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHH----HHTT-CHHHHHHHHHHHHHHHHT--T-HHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHH----HHHhccchhHHHHHHHHHHHHHc--CCHHHHH
Confidence 4566677776665532 333 3334577888888655 79999999999999999998874 3344466
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-QKFDEAERMQLKAI 159 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al 159 (303)
..+...+ .+|.. +++++|+.++++|+.++.+. +.....+.++..+|.+|... |++++|+++|++|+
T Consensus 76 ~~~~~Aa----------~~~k~-~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 76 KAYEEAA----------NCYKK-GDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHH----------HHHHH-TTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHH----------HHHHh-hCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777 44444 49999999999999999864 44556678999999999999 99999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHH
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDY 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~ 239 (303)
++++.. +.......++..+|.++. ..|+|++|++.|+++..... .. ..........+
T Consensus 143 ~~y~~e--~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l-------------------~~-~l~~~~~~~~~ 199 (282)
T PF14938_consen 143 ELYEQE--GSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCL-------------------EN-NLLKYSAKEYF 199 (282)
T ss_dssp HHHHHT--T-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCC-------------------CH-CTTGHHHHHHH
T ss_pred HHHHHC--CChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhh-------------------cc-cccchhHHHHH
Confidence 999874 334456678889999998 99999999999999887543 11 01111233445
Q ss_pred HhHHHHHHhhhcHHHHHHHHHH
Q psy4339 240 RGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~~~ 261 (303)
...+.++...||...|.+.++.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 6778888888998888775443
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.61 E-value=1e-13 Score=126.77 Aligned_cols=180 Identities=15% Similarity=0.071 Sum_probs=134.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|+..+++++.... +........++ .++...|++++|+..+++++.. +
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~-------~~~~~~~~~l~----------~~l~~~g~~~eA~~~~~~al~~--------~ 242 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFA-------LERQESAGLAV----------DTLCAVGKYQEAIQTGESALAR--------G 242 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCC-------CcchhHHHHHH----------HHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 488999999999998766511 11112224445 5568899999999999999985 2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHH----HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDE----AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
|....++.++|.++..+|++++ |+..+++++++. |....++.++|.++. .+|++++|+..+++++..
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALI-RTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHh
Confidence 4446678889999999999986 899999998764 555678889999997 999999999999999998
Q ss_pred hhhhhh----hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 205 NDNLKL----FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 205 ~~~~~~----~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.|+++. ++.++...+.+.+|+..+ ...+|........+|.++...|++++|+..++.+
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 887653 444555556666665322 2235555556667899999999999999955443
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.61 E-value=2.1e-13 Score=132.45 Aligned_cols=223 Identities=13% Similarity=0.015 Sum_probs=148.6
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|+..|++++++ +|....++..+|.++ ..+|++++|+.+|++++++. |....++..++
T Consensus 367 ~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~----~~~g~~~eA~~~y~~aL~~~--------p~~~~a~~~L~ 426 (1157)
T PRK11447 367 LAQAERLYQQARQV--------DNTDSYAVLGLGDVA----MARKDYAAAERYYQQALRMD--------PGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence 45566666666655 345567888999877 69999999999999999872 22122233333
Q ss_pred HHHH-----------------------------------HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 88 LILE-----------------------------------EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 88 ~~~~-----------------------------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
.++. ..+ ..+...|++++|+..|+++++. .|...
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a---~~~~~~g~~~eA~~~~~~Al~~--------~P~~~ 495 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA---EALENQGKWAQAAELQRQRLAL--------DPGSV 495 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH---HHHHHCCCHHHHHHHHHHHHHh--------CCCCH
Confidence 2221 111 5567889999999999999986 23344
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-------------cC--------------------------------
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV-------------LG-------------------------------- 167 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~-------------------------------- 167 (303)
.++..+|.+|..+|++++|+..++++++..... .+
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 567899999999999999999998887642000 00
Q ss_pred ---------------------CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhH
Q psy4339 168 ---------------------KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHY 222 (303)
Q Consensus 168 ---------------------~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~ 222 (303)
..+|.....+..+|.++. ..|++++|+..|++++...|+++. ++..+...+...
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~-~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQ-QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 001112235667899997 999999999999999998886553 344444445555
Q ss_pred HHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 223 RDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 223 ~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|+..+ ....|+....+..+|.++...|++++|.++++.+
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 554222 2234455566777788888888888888755443
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.60 E-value=8.5e-14 Score=130.67 Aligned_cols=186 Identities=11% Similarity=-0.062 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
+..+|.++ ...|++++|+.+++++++. +|........++ ......|++++|+..++++
T Consensus 545 ~~~la~al----l~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La----------~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 545 LLAAANTA----QAAGNGAARDRWLQQAEQR--------GLGDNALYWWLH----------AQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHH----HHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHH----------HHHHhCCCHHHHHHHHHHH
Confidence 55667555 5788888888888888765 122223333344 3334558888888888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEK 196 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~ 196 (303)
++. .|. ...+.++|.++..+|++++|+..+++++.+. |....++.++|.++. ..|++++|+.
T Consensus 603 L~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--------Pd~~~a~~nLG~aL~-~~G~~eeAi~ 664 (987)
T PRK09782 603 LNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE--------PNNSNYQAALGYALW-DSGDIAQSRE 664 (987)
T ss_pred HHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence 875 222 4567788888888888888888888887763 444567788888886 8888888888
Q ss_pred HHHHHHHhhhhhhh----hhhhhhhhhhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 197 LYFRSIEINDNLKL----FSASYSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 197 ~~~~al~~~~~~~~----~~~~~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.+++++++.|+++. .+.++..++.+.+|+ +......|..+.+....|.+...+.+++.|.+ +.+..
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 88888887776542 444444445444443 22223355666777788888888888888877 44443
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.60 E-value=1.5e-13 Score=129.09 Aligned_cols=185 Identities=11% Similarity=0.001 Sum_probs=139.9
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
...+|.++ ...|++++|+..|++++.. .+.. ..+..+| .++...|++++|+.+++++
T Consensus 512 ~L~lA~al----~~~Gr~eeAi~~~rka~~~-----~p~~----~a~~~la----------~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 512 HRAVAYQA----YQVEDYATALAAWQKISLH-----DMSN----EDLLAAA----------NTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHH----HHCCCHHHHHHHHHHHhcc-----CCCc----HHHHHHH----------HHHHHCCCHHHHHHHHHHH
Confidence 55566555 4899999999999986443 1111 2345667 5668999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEK 196 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~ 196 (303)
++. .|.....+..++.....+|++++|+..+++++++. |. ...+.++|.++. ..|++++|+.
T Consensus 569 L~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~-~lG~~deA~~ 630 (987)
T PRK09782 569 EQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYR-QRHNVPAAVS 630 (987)
T ss_pred Hhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHH-HCCCHHHHHH
Confidence 985 13333445566666677799999999999999764 43 567899999998 9999999999
Q ss_pred HHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 197 LYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 197 ~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.+++++.+.|+++. ++.++...+...+|+..+ -...|....++.++|.++...|++++|+.+++.+
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999997663 344455555555665332 2346777788999999999999999999955444
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=1.6e-13 Score=123.32 Aligned_cols=204 Identities=12% Similarity=-0.087 Sum_probs=141.6
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|...+++|+++ +|+.+.++..+|.++ ...|++++|+..|++++++ +|..+.++..+|
T Consensus 320 ~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~----~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg 379 (553)
T PRK12370 320 MIKAKEHAIKATEL--------DHNNPQALGLLGLIN----TIHSEYIVGSLLFKQANLL--------SPISADIKYYYG 379 (553)
T ss_pred HHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 34455555555444 466778889999777 5899999999999999998 456667888899
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++...|++++|+..+++++++. +.+ ......++.++...|++++|+..+++++...
T Consensus 380 ----------~~l~~~G~~~eAi~~~~~Al~l~-----P~~---~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----- 436 (553)
T PRK12370 380 ----------WNLFMAGQLEEALQTINECLKLD-----PTR---AAAGITKLWITYYHTGIDDAIRLGDELRSQH----- 436 (553)
T ss_pred ----------HHHHHCCCHHHHHHHHHHHHhcC-----CCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-----
Confidence 66699999999999999999962 232 2334456667778999999999999987542
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhh-----HHHHhhhccccccHHHH
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYH-----YRDLKLFSASYSGLEYD 238 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~-----~~a~~~~~~~~~~~~~~ 238 (303)
+|.....+.++|.++. .+|++++|...+.+.....+... .++..+...+.- .+.++.....+ . .
T Consensus 437 --~p~~~~~~~~la~~l~-~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~-~---~ 509 (553)
T PRK12370 437 --LQDNPILLSMQVMFLS-LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRID-N---N 509 (553)
T ss_pred --cccCHHHHHHHHHHHH-hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhh-c---C
Confidence 2444557889999998 99999999999998776655322 122222222211 11111111111 1 1
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 239 YRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
...++.+|.-.|+.+.+.-+ +.+
T Consensus 510 ~~~~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 510 PGLLPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred chHHHHHHHHHhhhHHHHHH-HHh
Confidence 23388888899998888877 444
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.59 E-value=2e-13 Score=132.68 Aligned_cols=215 Identities=12% Similarity=0.019 Sum_probs=148.2
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhh-------
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLL------- 79 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------- 79 (303)
.++.|+..|+++++. +|....++..||.++ ..+|++++|+.+|+++++.... ++..
T Consensus 284 ~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~----~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll 346 (1157)
T PRK11447 284 QGGKAIPELQQAVRA--------NPKDSEALGALGQAY----SQQGDRARAVAQFEKALALDPH-----SSNRDKWESLL 346 (1157)
T ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHH
Confidence 345566666666554 455678899999877 5999999999999999987322 2111
Q ss_pred ----HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 80 ----TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 80 ----~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
.......| ..+...|++++|+..|+++++. +|....++..+|.++..+|++++|+.+|
T Consensus 347 ~~~~~~~~~~~g----------~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 347 KVNRYWLLIQQG----------DAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred HhhhHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 01112234 6668999999999999999996 2344567889999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHH---------------------------------------HHHHHHHHHHHHHhhcCHHHHHH
Q psy4339 156 LKAIAIKEKVLGKDDYEV---------------------------------------GLSVGHLASLYNYHMLEYHKAEK 196 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~---------------------------------------~~~~~~la~~~~~~~g~~~~A~~ 196 (303)
++++++. ++++.. ...+..+|.++. ..|++++|+.
T Consensus 409 ~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~-~~g~~~eA~~ 482 (1157)
T PRK11447 409 QQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE-NQGKWAQAAE 482 (1157)
T ss_pred HHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH-HCCCHHHHHH
Confidence 9999763 111110 112344667776 7888888888
Q ss_pred HHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 197 LYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 197 ~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|++++++.|+++. ++..+...+...+|...+ ....|.....++.++..+...|+.++|+..++.+
T Consensus 483 ~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 483 LQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 88888888876552 444555555555554322 2234555566777777777788888888765544
No 31
>KOG1173|consensus
Probab=99.56 E-value=2.5e-13 Score=115.10 Aligned_cols=200 Identities=18% Similarity=0.204 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
.+.-.+|.-+.++.+ +.|..+.+|..+| +|| ...|++.+|..+|.++-.+ +|..+.++...|.
T Consensus 292 ~~~n~Lf~lsh~LV~-----~yP~~a~sW~aVg-~YY---l~i~k~seARry~SKat~l--------D~~fgpaWl~fgh 354 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVD-----LYPSKALSWFAVG-CYY---LMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGH 354 (611)
T ss_pred cccchHHHHHHHHHH-----hCCCCCcchhhHH-HHH---HHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhH
Confidence 344556666666643 3677778888888 677 6778888888888888765 2333333333442
Q ss_pred HHHHHhhhh------------------------HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 89 ILEEIALDS------------------------NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 89 ~~~~~~~~~------------------------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
++...+... .-|...++++-|..+|.+|+.+. |.+| -.++.+|.+...
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----P~Dp---lv~~Elgvvay~ 426 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----PSDP---LVLHELGVVAYT 426 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-----CCcc---hhhhhhhheeeh
Confidence 221000000 33455667777777777777753 3333 357789999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHH
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRD 224 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a 224 (303)
.+.|.+|..+|+.++...+... +..+...-.+.|||.+++ +++++++|+.++++++.+.+
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~R-kl~~~~eAI~~~q~aL~l~~------------------ 486 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYR-KLNKYEEAIDYYQKALLLSP------------------ 486 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHH-HHhhHHHHHHHHHHHHHcCC------------------
Confidence 9999999999999997665543 333345567899999999 99999999999999999887
Q ss_pred HhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 225 LKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
..+.++..+|.+|..+|+++.|++ +.+++
T Consensus 487 ---------k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 487 ---------KDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred ---------CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 456678899999999999999999 55655
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.55 E-value=5.3e-13 Score=127.04 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh--
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL-- 210 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 210 (303)
.++..+|.+|...|++++|+.+|+++++.. |....++.++|.++. ..|+ .+|+.++++++.+.++++.
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA--------PDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 344455555555555555555555554431 222334445555554 5555 4455555555555444332
Q ss_pred --hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHH
Q psy4339 211 --FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEF 258 (303)
Q Consensus 211 --~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (303)
++..+...+.+.+|++.+ -...|....++.+++.++...|++++|.+.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 222223333333332111 111222334455555555555555555553
No 33
>KOG0547|consensus
Probab=99.54 E-value=1.6e-12 Score=108.58 Aligned_cols=197 Identities=15% Similarity=0.031 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|.....+..+|-.| ....+-++....|.+|.++ +|..+.+|+..| .++.-.+++++|+
T Consensus 357 ~~~~~lyI~~a~~y----~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRg----------Qm~flL~q~e~A~ 414 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAY----ADENQSEKMWKDFNKAEDL--------DPENPDVYYHRG----------QMRFLLQQYEEAI 414 (606)
T ss_pred cccchHHHHHHHHH----hhhhccHHHHHHHHHHHhc--------CCCCCchhHhHH----------HHHHHHHHHHHHH
Confidence 33344477788444 6788888888999988877 555667888888 5568899999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
.-|++++++ .|..+.++..++...+++++++++...|++++.-+ |.-..++...|.++. .+++
T Consensus 415 aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~Evy~~fAeiLt-Dqqq 477 (606)
T KOG0547|consen 415 ADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPEVYNLFAEILT-DQQQ 477 (606)
T ss_pred HHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCchHHHHHHHHHh-hHHh
Confidence 999999996 56778889999999999999999999999998765 555667888999998 9999
Q ss_pred HHHHHHHHHHHHHhhhh--------hhhhhhhhh---hhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDN--------LKLFSASYS---GLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMT 256 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~--------~~~~~~~~~---~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (303)
+++|++.|.+|+.+.++ .|.+..+.. .-+.+.+|++.+ .+-+|..-.++..||.+-.++|+.++|+
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999885 123332222 124555555433 2346777788999999999999999999
Q ss_pred HHH-HHHHHHH
Q psy4339 257 EFT-NKLSEWK 266 (303)
Q Consensus 257 ~~~-~~~~~~~ 266 (303)
+++ +++...+
T Consensus 558 elFEksa~lAr 568 (606)
T KOG0547|consen 558 ELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHH
Confidence 955 5554443
No 34
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.54 E-value=8.3e-13 Score=125.71 Aligned_cols=215 Identities=15% Similarity=0.063 Sum_probs=122.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
.-++.|..+|++++++ .|....++.++|.++ ...|++++|...++++++. .|....++..
T Consensus 479 ~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~ 538 (899)
T TIGR02917 479 GDLAKAREAFEKALSI--------EPDFFPAAANLARID----IQEGNPDDAIQRFEKVLTI--------DPKNLRAILA 538 (899)
T ss_pred CCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CcCcHHHHHH
Confidence 4456677777777654 223334555666544 4666666666666666543 1112223333
Q ss_pred HHHHHH---------------------------HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy4339 86 KALILE---------------------------EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNI 138 (303)
Q Consensus 86 la~~~~---------------------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 138 (303)
++.++. .++ ..+...|++++|+..+++++.. .|....++..+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 607 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA---QYYLGKGQLKKALAILNEAADA--------APDSPEAWLML 607 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHH---HHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHH
Confidence 331110 000 4445556666666666555442 22334567778
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhh
Q psy4339 139 GRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSAS 214 (303)
Q Consensus 139 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~ 214 (303)
|.++...|++++|+.+++++++.. |....++..+|.++. ..|++++|...+++++...|+++. .+..
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQ--------PDSALALLLLADAYA-VMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 888888888888888888877642 333456777888886 888888888888888877765432 2222
Q ss_pred hhhhhhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 215 YSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 215 ~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
+...+...+|. +......|.....+..+|.++...|++++|.++++
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22223333333 22223344455556677777777777777777443
No 35
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.51 E-value=2e-13 Score=89.64 Aligned_cols=77 Identities=29% Similarity=0.530 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
||..+.++.++|.+|..+|++++|+++|++++++ .+..|+++|.++.++.++|.++. .+|++++|+.++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhc
Confidence 5788999999999999999999999999999999 66678888899999999999997 99999999999999999875
No 36
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.50 E-value=9.5e-12 Score=99.98 Aligned_cols=171 Identities=15% Similarity=-0.017 Sum_probs=125.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|...|+++++. .+++|....++..+|.++ ...|++++|+..++++++.. ++++....+++.
T Consensus 47 ~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~----~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~ 112 (235)
T TIGR03302 47 GDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAY----YKSGDYAEAIAAADRFIRLH-----PNHPDADYAYYL 112 (235)
T ss_pred CCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHC-----cCCCchHHHHHH
Confidence 3445555555555443 345666778899999888 59999999999999999873 445555567888
Q ss_pred HHHHHHHH-hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH--------------HHHHHHHHHHHHhhcHHH
Q psy4339 86 KALILEEI-ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA--------------KHYGNIGRLYQSMQKFDE 150 (303)
Q Consensus 86 la~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------~~~~~la~~~~~~~~~~~ 150 (303)
+|.++... + ..+...|++++|+..+++++.... +++... .....+|.+|..+|++++
T Consensus 113 ~g~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 113 RGLSNYNQID---RVDRDQTAAREAFEAFQELIRRYP-----NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHhcc---cccCCHHHHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 88554211 0 122344899999999999998642 232221 122478999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 151 AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 151 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
|+..++++++.. ++.|....++..+|.++. ..|++++|..+++.....
T Consensus 185 A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~-~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENY-----PDTPATEEALARLVEAYL-KLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHC-----CCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 999999999875 556777889999999997 999999999988776543
No 37
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.48 E-value=5.6e-13 Score=87.50 Aligned_cols=78 Identities=27% Similarity=0.298 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
||..+.++.++| .+|..+|++++|+.+|++++++ .+..+++++.++.++.++|.++..+|++++|++++
T Consensus 1 H~~~a~~~~~la----------~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 69 (78)
T PF13424_consen 1 HPDTANAYNNLA----------RVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYY 69 (78)
T ss_dssp -HHHHHHHHHHH----------HHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 578889999999 7779999999999999999999 55567788889999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4339 156 LKAIAIKEK 164 (303)
Q Consensus 156 ~~al~~~~~ 164 (303)
++++++.++
T Consensus 70 ~~al~i~~k 78 (78)
T PF13424_consen 70 QKALDIFEK 78 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhcC
Confidence 999998753
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=2.7e-13 Score=111.90 Aligned_cols=216 Identities=17% Similarity=0.077 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH--
Q psy4339 15 SQLALKLKQVLFGSE-NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE-- 91 (303)
Q Consensus 15 ~~~al~~~~~~~~~~-~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-- 91 (303)
+++|+++.++..... +|.....+..+|.+. ...+++++|+..|++.+..-.. .+ ..+..++.++.
T Consensus 24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La----~~~~~~~~A~~ay~~l~~~~~~-----~~---~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLA----WSLGDYDEAIEAYEKLLASDKA-----NP---QDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc----cccccccccccccccccccccc-----cc---ccccccccccccc
Confidence 456666664433333 455666777777555 5788999999999888765222 11 11222220000
Q ss_pred --------------HH----hh--hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHH
Q psy4339 92 --------------EI----AL--DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEA 151 (303)
Q Consensus 92 --------------~~----~~--~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 151 (303)
.- .+ ...++...++++++...+.++... +..+.....+..+|.++...|++++|
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 00 00 002233444444444444443321 11122333444555555555555555
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhh
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKL 227 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~ 227 (303)
+.+++++++.. |....+...++.++. ..|+++++...++......+++| .++.++..++...+|+..
T Consensus 166 ~~~~~~al~~~--------P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 166 LRDYRKALELD--------PDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHHHHHHH---------TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHcC--------CCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 55555555543 222333444555554 55555555555544444443333 234444444444444421
Q ss_pred h---ccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 228 F---SASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 228 ~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+ ...+|....++..+|.++...|+.++|..
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 1 12233444445555555555555555555
No 39
>KOG1129|consensus
Probab=99.48 E-value=3.7e-13 Score=107.11 Aligned_cols=189 Identities=10% Similarity=-0.051 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
+++..|+.+| ....+...|+..+.+.++.+ |.-...+..+| .++...+++++|.++|+
T Consensus 257 dTfllLskvY----~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~A----------Ri~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 257 DTFLLLSKVY----QRIDQPERALLVIGEGLDSF--------PFDVTYLLGQA----------RIHEAMEQQEDALQLYK 314 (478)
T ss_pred hHHHHHHHHH----HHhccHHHHHHHHhhhhhcC--------CchhhhhhhhH----------HHHHHHHhHHHHHHHHH
Confidence 3444555555 46666666666666666542 22233334444 44456666666666666
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
.+++. +|....+..-+|.-|..-++.+-|+.+|++.+++- ..+| ..++|+|.++. --+++|-+
T Consensus 315 ~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~~sp---eLf~NigLCC~-yaqQ~D~~ 377 (478)
T KOG1129|consen 315 LVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----AQSP---ELFCNIGLCCL-YAQQIDLV 377 (478)
T ss_pred HHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----CCCh---HHHhhHHHHHH-hhcchhhh
Confidence 66653 22223333344445555555555555555555432 2222 23455555554 45555555
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhH----------HHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 195 EKLYFRSIEINDNLKLFSASYSGLEYHY----------RDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 195 ~~~~~~al~~~~~~~~~~~~~~~l~~~~----------~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+..+++|+....+...-+..+++|+... +-+...-..++....++.+||.+-.+.|+.++|..++..+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 5555555555544444444444442211 1122222344578889999999999999999999988776
No 40
>KOG2003|consensus
Probab=99.47 E-value=1.1e-11 Score=103.08 Aligned_cols=210 Identities=16% Similarity=0.174 Sum_probs=146.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
+.|+++.+-.-..++.....+-.+|...+|. .--.++..|..+...|+.+ +...+.++.|.|
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~fl--qggk~~~~aqqyad~aln~--------dryn~~a~~nkg-------- 497 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFL--QGGKDFADAQQYADIALNI--------DRYNAAALTNKG-------- 497 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHH--hcccchhHHHHHHHHHhcc--------cccCHHHhhcCC--------
Confidence 3466665555445655555666777754531 1134677888888777766 223345566666
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 96 DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
++-+..|++++|.+.|++|+. ++..-..+++|+|..+..+|+.++|+++|-+...+. ...+.
T Consensus 498 --n~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il--------~nn~e 559 (840)
T KOG2003|consen 498 --NIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--------LNNAE 559 (840)
T ss_pred --ceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--------HhhHH
Confidence 555788999999999998887 345567788899999999999999999998887776 33467
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh-------------------------------------
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL------------------------------------- 218 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l------------------------------------- 218 (303)
++..++.+|. .+.+..+|++++-++..+.|++|.+..-+..|
T Consensus 560 vl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 560 VLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 7889999997 89999999999999998888887654444333
Q ss_pred -hhhHHHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 219 -EYHYRDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 219 -~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.+..+++.-+. --.|........++.++.+.|+|.+|.+.++..
T Consensus 639 tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 01112322211 124556667778999999999999999855443
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.8e-11 Score=96.38 Aligned_cols=215 Identities=12% Similarity=0.061 Sum_probs=158.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhh
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALD 96 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 96 (303)
+|++.+..++. .+|.+.++...||+.+ ++.|..|.|+...+..++. .+-.......+...+|
T Consensus 53 KAvdlF~e~l~-~d~~t~e~~ltLGnLf----RsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~qL~--------- 114 (389)
T COG2956 53 KAVDLFLEMLQ-EDPETFEAHLTLGNLF----RSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQQLG--------- 114 (389)
T ss_pred hHHHHHHHHHh-cCchhhHHHHHHHHHH----HhcchHHHHHHHHHHHhcC----CCCchHHHHHHHHHHH---------
Confidence 45555555543 4678899999999755 8999999999998875543 1112223556677777
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
.-|...|-+|.|+..|....+. +.....+...|..+|....+|++|++.-++...+..+ +...+++..
T Consensus 115 -~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqf 182 (389)
T COG2956 115 -RDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQF 182 (389)
T ss_pred -HHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHH
Confidence 8889999999999999876652 2233467889999999999999999998887766433 344678888
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh----hhhHHHH---hhhc-cccccHHHHHHhHHHHHHh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL----EYHYRDL---KLFS-ASYSGLEYDYRGLIHVYEC 248 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l----~~~~~a~---~~~~-~~~~~~~~~~~~la~~~~~ 248 (303)
++.+|..+. ...+.+.|...+.+|++..+++-...+.+.++ +.+.+|+ +... .++.-...+...|..+|..
T Consensus 183 yCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 183 YCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 999999998 89999999999999999988766555555444 4455554 2222 3333466778889999999
Q ss_pred hhcHHHHHHHHHHH
Q psy4339 249 LENFEKMTEFTNKL 262 (303)
Q Consensus 249 ~g~~~~A~~~~~~~ 262 (303)
.|+.++...++...
T Consensus 262 lg~~~~~~~fL~~~ 275 (389)
T COG2956 262 LGKPAEGLNFLRRA 275 (389)
T ss_pred hCCHHHHHHHHHHH
Confidence 99999998865433
No 42
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.45 E-value=3.7e-12 Score=93.77 Aligned_cols=112 Identities=8% Similarity=-0.030 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy4339 57 SRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYG 136 (303)
Q Consensus 57 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 136 (303)
-+.++++++++ +|.. +..+| ..+...|++++|...|++++.. +|....++.
T Consensus 12 ~~~~~~~al~~--------~p~~---~~~~g----------~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~ 62 (144)
T PRK15359 12 PEDILKQLLSV--------DPET---VYASG----------YASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHI 62 (144)
T ss_pred HHHHHHHHHHc--------CHHH---HHHHH----------HHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence 35677888776 3432 34567 6668999999999999999885 456678899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++|.++...|++++|+..|++++.+. |....+++++|.++. ..|++++|+..|++++.+.|
T Consensus 63 ~lg~~~~~~g~~~~A~~~y~~Al~l~--------p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 63 ALAGTWMMLKEYTTAINFYGHALMLD--------ASHPEPVYQTGVCLK-MMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999763 566778999999997 99999999999999999888
No 43
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=4.5e-12 Score=93.32 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 91 (303)
+.++++++++ +|+. +..+|.++ ...|++++|+.+|++++.. +|....++.++|
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg---- 65 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYAS----WQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALA---- 65 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHH----
Confidence 4567777666 4543 45678777 5999999999999999876 566678899999
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 92 EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 92 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
.++...|++++|+..|++++.+ .|....++.++|.++..+|++++|+..|++++.+. |
T Consensus 66 ------~~~~~~g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p 123 (144)
T PRK15359 66 ------GTWMMLKEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------Y 123 (144)
T ss_pred ------HHHHHHhhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Confidence 6679999999999999999985 45567789999999999999999999999999875 4
Q ss_pred HHHHHHHHHHHHHH
Q psy4339 172 EVGLSVGHLASLYN 185 (303)
Q Consensus 172 ~~~~~~~~la~~~~ 185 (303)
.....+.++|.+..
T Consensus 124 ~~~~~~~~~~~~~~ 137 (144)
T PRK15359 124 ADASWSEIRQNAQI 137 (144)
T ss_pred CChHHHHHHHHHHH
Confidence 44445566666654
No 44
>KOG1173|consensus
Probab=99.43 E-value=3.6e-12 Score=108.19 Aligned_cols=208 Identities=16% Similarity=0.103 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
|++.+++...++..+++.....-..+| ++| ..|+.. .+|.-+-++... .|..+.++..+|
T Consensus 260 f~~c~kit~~lle~dpfh~~~~~~~ia-~l~----el~~~n---~Lf~lsh~LV~~-----yP~~a~sW~aVg------- 319 (611)
T KOG1173|consen 260 FKECLKITEELLEKDPFHLPCLPLHIA-CLY----ELGKSN---KLFLLSHKLVDL-----YPSKALSWFAVG------- 319 (611)
T ss_pred HHHHHHHhHHHHhhCCCCcchHHHHHH-HHH----Hhcccc---hHHHHHHHHHHh-----CCCCCcchhhHH-------
Confidence 667777777777656555556667888 775 677644 456666665433 677778888888
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
.-|...|++.+|.++|-||..+ +|..+.+|...|..+...|..++|+.+|..|-++... ..-|
T Consensus 320 ---~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G---~hlP--- 382 (611)
T KOG1173|consen 320 ---CYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG---CHLP--- 382 (611)
T ss_pred ---HHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC---Ccch---
Confidence 5558889999999999999886 5677888999999999999999999999999887632 2323
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh----hhhhhhhhhhHHHH----------hhhccccccHHHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF----SASYSGLEYHYRDL----------KLFSASYSGLEYDYR 240 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~l~~~~~a~----------~~~~~~~~~~~~~~~ 240 (303)
...+|.-|. ..+++.-|..+|.+|+.++|.+|.+ +...+.-+.+.+|. +...+..+.....+.
T Consensus 383 --~LYlgmey~-~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 383 --SLYLGMEYM-RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred --HHHHHHHHH-HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 457888897 8999999999999999999988853 33333333333332 222233333445688
Q ss_pred hHHHHHHhhhcHHHHHHHHHHH
Q psy4339 241 GLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 241 ~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+||.++.+.+++++|+.+++..
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999965544
No 45
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.42 E-value=1.2e-10 Score=95.95 Aligned_cols=178 Identities=16% Similarity=0.049 Sum_probs=133.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|...|.+|.+++.+. .+....+..+...+.++ ..+++++|+.++++|++++... +.....+.++..
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~-----k~~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~ 119 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCY-----KKGDPDEAIECYEKAIEIYREA--GRFSQAAKCLKE 119 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHH-----HHTTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH-----HhhCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHH
Confidence 45677888888888887772 44556778888888665 5559999999999999999874 333447888999
Q ss_pred HHHHHHHHhhhhHHHHhh-hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 86 KALILEEIALDSNELISV-QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+| .+|... |++++|+++|++|+++++.. +.......++..+|.++...|+|++|++.|+++......
T Consensus 120 lA----------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 120 LA----------EIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HH----------HHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HH----------HHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 99 666888 99999999999999999874 234456688899999999999999999999998765322
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.. .........+...+.++. ..|++..|...+++.....|
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L-~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHL-AMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHGTTST
T ss_pred cc-ccchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 10 112334455677888887 99999999999999887776
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=3.3e-11 Score=99.91 Aligned_cols=161 Identities=17% Similarity=0.018 Sum_probs=114.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
+..+.|...|++++++ +|+.+.++..+|.++ ...|++++|+..|++++++ +|....++.+
T Consensus 78 g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~----~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~ 137 (296)
T PRK11189 78 GLRALARNDFSQALAL--------RPDMADAYNYLGIYL----TQAGNFDAAYEAFDSVLEL--------DPTYNYAYLN 137 (296)
T ss_pred CCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 3445566666666654 466678999999766 6999999999999999987 5666678899
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH--
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE-- 163 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-- 163 (303)
+| .++...|++++|++.++++++.. ++++.. ..+ ..+....+++++|+..+.+++....
T Consensus 138 lg----------~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 138 RG----------IALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HH----------HHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 99 66689999999999999999852 333321 111 1233456678888888866543210
Q ss_pred --------HhcCC---------------C----chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 164 --------KVLGK---------------D----DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 164 --------~~~~~---------------~----~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
-..|. . .|....+++++|.++. ..|++++|+.+|++++.+.+
T Consensus 199 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~-~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 199 QWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL-SLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC
Confidence 00010 0 1233467899999998 99999999999999998775
No 47
>KOG1941|consensus
Probab=99.37 E-value=2.5e-10 Score=92.42 Aligned_cols=198 Identities=12% Similarity=0.069 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch-hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH-LLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.....++.+|+..+ ...-+|.+++.+-.-.+.. .|... ..-......+| ..+...+.|+++
T Consensus 80 ~~~~ea~lnlar~~----e~l~~f~kt~~y~k~~l~l----pgt~~~~~~gq~~l~~~----------~Ahlgls~fq~~ 141 (518)
T KOG1941|consen 80 DFLLEAYLNLARSN----EKLCEFHKTISYCKTCLGL----PGTRAGQLGGQVSLSMG----------NAHLGLSVFQKA 141 (518)
T ss_pred HHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHhcC----CCCCcccccchhhhhHH----------HHhhhHHHHHHH
Confidence 34566777888666 5677777777776665554 12111 11234445566 777889999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHh
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD--DYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 187 (303)
++.|++|+.+...+ .|......++..||.++....++++|..+..+|.++.....-++ ......+++.++..++ .
T Consensus 142 Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~ 218 (518)
T KOG1941|consen 142 LESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-L 218 (518)
T ss_pred HHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-H
Confidence 99999999997654 33344567889999999999999999999999999987653122 2234567889999998 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWK 266 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~ 266 (303)
+|+..+|.++.+++.++.- ...+.+....+...+|++|...|+.+.|.. |.+++....
T Consensus 219 ~G~LgdA~e~C~Ea~klal---------------------~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 219 LGRLGDAMECCEEAMKLAL---------------------QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred hcccccHHHHHHHHHHHHH---------------------HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 9999999999999999887 223345677888999999999999999999 888887766
Q ss_pred HHHh
Q psy4339 267 ILRE 270 (303)
Q Consensus 267 ~~~~ 270 (303)
.+++
T Consensus 278 ~~gd 281 (518)
T KOG1941|consen 278 SLGD 281 (518)
T ss_pred hhhh
Confidence 6654
No 48
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=1.1e-10 Score=106.17 Aligned_cols=127 Identities=9% Similarity=-0.035 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
|....++.+|| .+....|.+++|+.+++.++++ .|+...+..++|.++.+++++++|+..++
T Consensus 83 ~~~~~~~~~La----------~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 83 PHTELFQVLVA----------RALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred cccHHHHHHHH----------HHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33455556666 4446666666666666666664 34445556666666666666666666666
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHH
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLE 236 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~ 236 (303)
+++... |+.+..++.+|.++. .+|++++|+.+|++++. + +|+..
T Consensus 145 ~~l~~~--------p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~--~-------------------------~p~~~ 188 (694)
T PRK15179 145 LYFSGG--------SSSAREILLEAKSWD-EIGQSEQADACFERLSR--Q-------------------------HPEFE 188 (694)
T ss_pred HHhhcC--------CCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHh--c-------------------------CCCcH
Confidence 665432 445555666666665 66666666666666655 2 22444
Q ss_pred HHHHhHHHHHHhhhcHHHHHH
Q psy4339 237 YDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 237 ~~~~~la~~~~~~g~~~~A~~ 257 (303)
.++..+|.++...|+.++|..
T Consensus 189 ~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 189 NGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 556666666666666666666
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.33 E-value=1.3e-10 Score=108.62 Aligned_cols=191 Identities=10% Similarity=-0.094 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHH
Q psy4339 15 SQLALKLKQVLFGSE--NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILE 91 (303)
Q Consensus 15 ~~~al~~~~~~~~~~--~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~ 91 (303)
+.+|++.+++++... .|..+..+ +|.++ ...|++++|+.+|++++.. .+..+. .......++
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~--la~~y----l~~g~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~---- 317 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRW--VASAY----LKLHQPEKAQSILTELFYH-----PETIADLSDEELADLF---- 317 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHH--HHHHH----HhcCCcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHH----
Confidence 455566666554332 24443333 46555 4788888888888887653 111111 123334444
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh---h--CCCcH--HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 92 EIALDSNELISVQFYKEAELLHQNALVLSLKH---F--GENNV--QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 92 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~--~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
..+...|++++|+.+++++....... . ....| ....++..+|.++...|++++|+..+++++...
T Consensus 318 ------~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-- 389 (765)
T PRK10049 318 ------YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-- 389 (765)
T ss_pred ------HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 45578999999999999888753210 0 00111 234577899999999999999999999998764
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHH
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIH 244 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~ 244 (303)
|....++..+|.++. ..|++++|+..+++++.+.| +....+..+|.
T Consensus 390 ------P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~P---------------------------d~~~l~~~~a~ 435 (765)
T PRK10049 390 ------PGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEP---------------------------RNINLEVEQAW 435 (765)
T ss_pred ------CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCC---------------------------CChHHHHHHHH
Confidence 444678899999998 99999999999999998877 44556888999
Q ss_pred HHHhhhcHHHHHHHHHHH
Q psy4339 245 VYECLENFEKMTEFTNKL 262 (303)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~ 262 (303)
++...|++++|...++.+
T Consensus 436 ~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 999999999999955444
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.33 E-value=1.8e-10 Score=104.65 Aligned_cols=139 Identities=9% Similarity=-0.074 Sum_probs=123.3
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.|..+.++.+||.+. ...|++++|+.+++.++++ .|+...+..+++ .++.+.+++++
T Consensus 81 ~~~~~~~~~~~La~i~----~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a----------~~L~~~~~~ee 138 (694)
T PRK15179 81 RYPHTELFQVLVARAL----EAAHRSDEGLAVWRGIHQR--------FPDSSEAFILML----------RGVKRQQGIEA 138 (694)
T ss_pred hccccHHHHHHHHHHH----HHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHH----------HHHHHhccHHH
Confidence 4566788999999888 7999999999999999998 567778888899 66699999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+..+++++.. .|+...+++.+|.++...|++++|+.+|++++.- +|....++.++|.++. ..
T Consensus 139 A~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~a~~l~-~~ 201 (694)
T PRK15179 139 GRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGWAQSLT-RR 201 (694)
T ss_pred HHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH-Hc
Confidence 99999999995 4667788999999999999999999999999861 3566778999999998 99
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
|+.++|...|+++++...
T Consensus 202 G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 202 GALWRARDVLQAGLDAIG 219 (694)
T ss_pred CCHHHHHHHHHHHHHhhC
Confidence 999999999999998776
No 51
>KOG2002|consensus
Probab=99.32 E-value=8.4e-10 Score=99.47 Aligned_cols=205 Identities=15% Similarity=0.046 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|....++..+|.++ .+++...++.+|..|++++...... .-...++|+| ..++..|++.+|.
T Consensus 411 ~~d~~a~l~laql~-----e~~d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNva----------slhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLL-----EQTDPWASLDAYGNALDILESKGKQ---IPPEVLNNVA----------SLHFRLGNIEKAL 472 (1018)
T ss_pred cccHHHHHHHHHHH-----HhcChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHH----------HHHHHhcChHHHH
Confidence 66678888999655 6777778899999999988875333 3457889999 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 111 LLHQNALVLSLKHFGENN--VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
..|.+|+..+......+. ......-+|+|.++..+++++.|.+.|...+.. +|..+.++..+|..-. ..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~-~k 543 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMAR-DK 543 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHH-hc
Confidence 999999998543222222 122456789999999999999999999988754 5889999999997777 78
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhhhhhhh---------------------------------hhhH-------------
Q psy4339 189 LEYHKAEKLYFRSIEINDNLKLFSASYSGL---------------------------------EYHY------------- 222 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l---------------------------------~~~~------------- 222 (303)
++..+|..+++.++.+...+|.....+.++ +++.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 999999999999999888666433333211 2111
Q ss_pred ------HHHhhhc---cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 223 ------RDLKLFS---ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 223 ------~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|++.++ ..+|....+-+.+|.++...|++.+|...+..+
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 3444433 346666677777788888888888887755444
No 52
>KOG0548|consensus
Probab=99.31 E-value=1.2e-09 Score=92.74 Aligned_cols=198 Identities=20% Similarity=0.159 Sum_probs=143.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
+..++.|+..|..++++. ....-+.+.+-++ ...|.+.+.......+++..... ..-+.
T Consensus 237 kk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~----~e~~~~~~c~~~c~~a~E~gre~--------rad~k 295 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA---------TDITYLNNIAAVY----LERGKYAECIELCEKAVEVGREL--------RADYK 295 (539)
T ss_pred hhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHH----HhccHHHHhhcchHHHHHHhHHH--------HHHHH
Confidence 345566666677666662 3445666677556 58999999999888887764332 12222
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH--hh----------------CCCcHHHHHHHHHHHHHHHHhh
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLK--HF----------------GENNVQTAKHYGNIGRLYQSMQ 146 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~~ 146 (303)
.++..+..++ ..|...++++.|+.+|.+++.-.+. .. .--.|..+.--..-|+.+...|
T Consensus 296 lIak~~~r~g---~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 296 LIAKALARLG---NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHhh---hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 2333333233 7889999999999999998875543 00 0113334444456699999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHh
Q psy4339 147 KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLK 226 (303)
Q Consensus 147 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~ 226 (303)
+|.+|+.+|.+|+... |..+..+.|.|.+|. .+|++..|+...+.++++.|
T Consensus 373 dy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p-------------------- 423 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--------PEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDP-------------------- 423 (539)
T ss_pred CHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCc--------------------
Confidence 9999999999988642 778889999999998 99999999999999998877
Q ss_pred hhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 227 LFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.....|..-|.++..+.+|++|.+ |.+++
T Consensus 424 -------~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 424 -------NFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777888888888888888 65555
No 53
>KOG0547|consensus
Probab=99.31 E-value=1.9e-10 Score=96.40 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+.++...| +++ +-.|+.-.|...+..++.+. |.....|..+| ..|....+-++....
T Consensus 325 ~A~al~~~g-tF~---fL~g~~~~a~~d~~~~I~l~--------~~~~~lyI~~a----------~~y~d~~~~~~~~~~ 382 (606)
T KOG0547|consen 325 MAEALLLRG-TFH---FLKGDSLGAQEDFDAAIKLD--------PAFNSLYIKRA----------AAYADENQSEKMWKD 382 (606)
T ss_pred HHHHHHHhh-hhh---hhcCCchhhhhhHHHHHhcC--------cccchHHHHHH----------HHHhhhhccHHHHHH
Confidence 467777777 444 78999999999999999883 33334477778 666899999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
|.+|.++ +|....+|+..|.++.-++++++|+.-|++++.+. |+.+..+..++.+. |++++++
T Consensus 383 F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--------pe~~~~~iQl~~a~-Yr~~k~~ 445 (606)
T KOG0547|consen 383 FNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--------PENAYAYIQLCCAL-YRQHKIA 445 (606)
T ss_pred HHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--------hhhhHHHHHHHHHH-HHHHHHH
Confidence 9999996 34455679999999999999999999999999874 88888999999999 5999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++...|+.+..-+| ..+.++.-.|.++..++++++|.+.+...
T Consensus 446 ~~m~~Fee~kkkFP---------------------------~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFP---------------------------NCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhCC---------------------------CCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999998888 55667888999999999999999955443
No 54
>KOG2002|consensus
Probab=99.30 E-value=4.6e-10 Score=101.09 Aligned_cols=212 Identities=17% Similarity=0.122 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+..++......+.. ++..+.+++.|++-+ +..|+|..+..+...++... ...+..+..++.+|
T Consensus 252 ~~~~~~ll~~ay~~-n~~nP~~l~~LAn~f----yfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~g------- 314 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKE-NNENPVALNHLANHF----YFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLG------- 314 (1018)
T ss_pred HHHHHHHHHHHHhh-cCCCcHHHHHHHHHH----hhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHH-------
Confidence 44444444443322 234456777777544 47778887777777776652 23455667777777
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
.+|..+|+|++|..+|.+++... ++ ...-.+..+|..|...|+++.|..+|++++... |...
T Consensus 315 ---Rs~Ha~Gd~ekA~~yY~~s~k~~-----~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--------p~~~ 376 (1018)
T KOG2002|consen 315 ---RSYHAQGDFEKAFKYYMESLKAD-----ND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--------PNNY 376 (1018)
T ss_pred ---HHHHhhccHHHHHHHHHHHHccC-----CC--CccccccchhHHHHHhchHHHHHHHHHHHHHhC--------cchH
Confidence 66678888888888888777742 11 134456677888888888888888888777654 3444
Q ss_pred HHHHHHHHHHHHhhc----CHHHHHHHHHHHHHhhhhhhh----hhhh------hhhhhhhHHHHhhh-ccccccHHHHH
Q psy4339 175 LSVGHLASLYNYHML----EYHKAEKLYFRSIEINDNLKL----FSAS------YSGLEYHYRDLKLF-SASYSGLEYDY 239 (303)
Q Consensus 175 ~~~~~la~~~~~~~g----~~~~A~~~~~~al~~~~~~~~----~~~~------~~~l~~~~~a~~~~-~~~~~~~~~~~ 239 (303)
.++.-||.+|. ..+ ..++|..+..+++...+.+.. ++.. +..|..+..|+..+ ....+.-..++
T Consensus 377 etm~iLG~Lya-~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYA-HSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHH-hhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45566777765 443 456777777777766542211 1111 11122233343222 12233345679
Q ss_pred HhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 240 RGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
+++|..++..|++.+|...+ ++.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHh
Confidence 99999999999999999954 444
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.28 E-value=1.1e-09 Score=102.53 Aligned_cols=214 Identities=14% Similarity=-0.007 Sum_probs=137.4
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|..+|+++++. .|....++..+|.++ ...|++++|+..++++++. .|.... +..+|
T Consensus 65 ~~~A~~~~~~al~~--------~P~~~~a~~~la~~l----~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la 123 (765)
T PRK10049 65 WQNSLTLWQKALSL--------EPQNDDYQRGLILTL----ADAGQYDEALVKAKQLVSG--------APDKAN-LLALA 123 (765)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHH
Confidence 44555555555544 344455667888666 5899999999999998876 344344 77778
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH----------
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK---------- 157 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~---------- 157 (303)
.++...|++++|+..++++++. .|....++..+|.++...+..++|+..+++
T Consensus 124 ----------~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 124 ----------YVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred ----------HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 6668999999999999999996 233445556678888777777776655552
Q ss_pred -----------------------------HHHHHHHhc---C---CCchHHHHHHHH-HHHHHHHhhcCHHHHHHHHHHH
Q psy4339 158 -----------------------------AIAIKEKVL---G---KDDYEVGLSVGH-LASLYNYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 158 -----------------------------al~~~~~~~---~---~~~~~~~~~~~~-la~~~~~~~g~~~~A~~~~~~a 201 (303)
|++..+... . ...+....+... ++.+ . ..|++++|+..|+++
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l-~~g~~~eA~~~~~~l 263 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-L-ARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-H-HhhhHHHHHHHHHHh
Confidence 222222211 1 111222333333 4444 3 689999999999999
Q ss_pred HHhhhhhhh-----hhhhhhhhhhhHHHHhhhc---ccccc----HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 202 IEINDNLKL-----FSASYSGLEYHYRDLKLFS---ASYSG----LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 202 l~~~~~~~~-----~~~~~~~l~~~~~a~~~~~---~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++..++.|. ++..+..++...+|+..+. ...|. .......++.++...|++++|..+++.+
T Consensus 264 l~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 264 KAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 887543332 5556666666666653221 22222 1345677888889999999999976555
No 56
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=5.2e-10 Score=95.62 Aligned_cols=171 Identities=12% Similarity=0.073 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
........|.++ ...|++++|...++++++.. ++++ .++.. + ..+...|++..+...
T Consensus 42 ~~e~~~~~a~~~----~~~g~~~~A~~~~~~~l~~~-----P~~~---~a~~~-~----------~~~~~~~~~~~~~~~ 98 (355)
T cd05804 42 ERERAHVEALSA----WIAGDLPKALALLEQLLDDY-----PRDL---LALKL-H----------LGAFGLGDFSGMRDH 98 (355)
T ss_pred HHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHC-----CCcH---HHHHH-h----------HHHHHhcccccCchh
Confidence 334455556455 48899999999999988761 2222 22222 3 222344444444444
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
..+++.. ..+.+|........+|.++..+|++++|+..+++++++. |....++..+|.++. ..|+++
T Consensus 99 ~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~-~~g~~~ 165 (355)
T cd05804 99 VARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLE-MQGRFK 165 (355)
T ss_pred HHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHH-HcCCHH
Confidence 4444443 234567777788889999999999999999999998864 333567788999996 999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|+.++++++...+ . ........+..+|.++..+|++++|...++.+
T Consensus 166 eA~~~l~~~l~~~~-------------------~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 166 EGIAFMESWRDTWD-------------------C----SSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHhhhhccC-------------------C----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988776 1 11123455778999999999999999966544
No 57
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.27 E-value=4.6e-10 Score=85.22 Aligned_cols=139 Identities=10% Similarity=-0.121 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH
Q psy4339 15 SQLALKLKQVLF-GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI 93 (303)
Q Consensus 15 ~~~al~~~~~~~-~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 93 (303)
|..+.+....++ .......+.++..+|.++ ...|++++|+..|++++.+. ++++..+.++.++|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~----~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg------ 79 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSA----QSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIG------ 79 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHH------
Confidence 333444444443 223445688899999766 68999999999999999873 23444567889999
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
.++...|++++|+..+++++.+.... +......+.++.++|..+..+|++++|+..+.+++..+++..+.+++..
T Consensus 80 ----~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 80 ----LIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred ----HHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 66699999999999999999863211 0111223334444444444999999999999999999998887776544
No 58
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.26 E-value=1.3e-10 Score=90.26 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH
Q psy4339 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT 131 (303)
Q Consensus 52 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 131 (303)
++.++++..+++++.. +|.....+..+| .+|...|++++|+..|++++.+ .|..
T Consensus 53 ~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg----------~~~~~~g~~~~A~~a~~~Al~l--------~P~~ 106 (198)
T PRK10370 53 QTPEAQLQALQDKIRA--------NPQNSEQWALLG----------EYYLWRNDYDNALLAYRQALQL--------RGEN 106 (198)
T ss_pred hhHHHHHHHHHHHHHH--------CCCCHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CCCC
Confidence 3445555555555544 566677888899 7779999999999999999996 3455
Q ss_pred HHHHHHHHHHH-HHhhc--HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 132 AKHYGNIGRLY-QSMQK--FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 132 ~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..++.++|.++ ...|+ +++|...++++++.. |....++.++|.++. ..|++++|+.+++++++..+
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~-~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAF-MQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 67788999975 67777 599999999999864 556678999999996 99999999999999999887
No 59
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.24 E-value=3.4e-10 Score=82.26 Aligned_cols=103 Identities=17% Similarity=0.051 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
++.....+.+| ..+...|++++|...|+-...+ +|.....+.+||.|+..+|+|++|+..|.
T Consensus 32 ~~~l~~lY~~A----------~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~ 93 (157)
T PRK15363 32 TQPLNTLYRYA----------MQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYG 93 (157)
T ss_pred HHHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55566677777 6668999999999999988876 57778889999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+|+.+. |+.+..+.+.|.++. ..|+.+.|...|+.++....
T Consensus 94 ~A~~L~--------~ddp~~~~~ag~c~L-~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 94 RAAQIK--------IDAPQAPWAAAECYL-ACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHhcC--------CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhc
Confidence 999874 444567899999997 99999999999999999885
No 60
>KOG1125|consensus
Probab=99.24 E-value=1.1e-10 Score=99.63 Aligned_cols=158 Identities=13% Similarity=0.033 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh-----------CCc----
Q psy4339 10 NLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL-----------LPE---- 74 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~---- 74 (303)
+|+.-+++++++ +|+...++..||..| ...|.-.+|+.++.+.+..-... .+.
T Consensus 337 ~ai~AL~rcl~L--------dP~NleaLmaLAVSy----tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~ 404 (579)
T KOG1125|consen 337 NAISALRRCLEL--------DPTNLEALMALAVSY----TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSF 404 (579)
T ss_pred HHHHHHHHHHhc--------CCccHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCC
Confidence 455566666655 678889999999544 79999999999999987642100 000
Q ss_pred ch------------------h--hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 75 NH------------------L--LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 75 ~~------------------~--~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
.+ | .-..++..|| .+|...|+|++|+++|+.||.. .|.....
T Consensus 405 ~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG----------VLy~ls~efdraiDcf~~AL~v--------~Pnd~~l 466 (579)
T KOG1125|consen 405 LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG----------VLYNLSGEFDRAVDCFEAALQV--------KPNDYLL 466 (579)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH----------HHHhcchHHHHHHHHHHHHHhc--------CCchHHH
Confidence 00 0 1122333344 6668999999999999999985 5677788
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++.||-.+..-.+.++|+..|.+|+++. |....+.+|+|..|. .+|-|++|.++|-.||.+.+
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~m-NlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCM-NLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhh-hhhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999985 888899999999999 99999999999999999988
No 61
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.24 E-value=1.1e-09 Score=79.69 Aligned_cols=102 Identities=11% Similarity=-0.051 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
++..+..+.+|..+| ..|++++|+..|+-...+ +|.....+.+|| .++..+|+|.+|+
T Consensus 32 ~~~l~~lY~~A~~ly----~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG----------~~~Q~~g~~~~AI 89 (157)
T PRK15363 32 TQPLNTLYRYAMQLM----EVKEFAGAARLFQLLTIY--------DAWSFDYWFRLG----------ECCQAQKHWGEAI 89 (157)
T ss_pred HHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHh--------CcccHHHHHHHH----------HHHHHHhhHHHHH
Confidence 788899999998885 999999999999988776 677788999999 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..|.+|+.+ +|+...++.++|.|+...|+.+.|.+.|+.|+...
T Consensus 90 ~aY~~A~~L--------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 90 YAYGRAAQI--------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999996 24455678999999999999999999999999987
No 62
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.24 E-value=8.2e-09 Score=99.02 Aligned_cols=213 Identities=13% Similarity=-0.048 Sum_probs=151.7
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENL-QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
++.+...+.++.+.........++ ....+...+|.++ ...|++++|..+++++++.... .+......+...+
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~l 497 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA----INDGDPEEAERLAELALAELPL---TWYYSRIVATSVL 497 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHH
Confidence 455555666555443221101121 2345555677665 5899999999999999875211 1222244556667
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| .++...|++++|...+++++...... ........++.++|.++...|++++|..++++++.+.+...
T Consensus 498 g----------~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 498 G----------EVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred H----------HHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 7 66689999999999999999987754 22334456778999999999999999999999999987754
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHH
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVY 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~ 246 (303)
+...+.....+..+|.++. ..|++++|...+.+++.+.. .. + ......++..+|.++
T Consensus 566 ~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~-------------------~~-~--~~~~~~~~~~la~~~ 622 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLW-EWARLDEAEQCARKGLEVLS-------------------NY-Q--PQQQLQCLAMLAKIS 622 (903)
T ss_pred cccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhHHhhh-------------------cc-C--chHHHHHHHHHHHHH
Confidence 4344444555678899996 99999999999999998876 21 1 223455677899999
Q ss_pred HhhhcHHHHHHHHHHH
Q psy4339 247 ECLENFEKMTEFTNKL 262 (303)
Q Consensus 247 ~~~g~~~~A~~~~~~~ 262 (303)
...|++++|...+..+
T Consensus 623 ~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 623 LARGDLDNARRYLNRL 638 (903)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999854443
No 63
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.23 E-value=1.1e-08 Score=98.27 Aligned_cols=218 Identities=14% Similarity=0.020 Sum_probs=154.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|...+.+++...... +. ....+.++..+|.++ ...|++++|...+.+++++.....+...+.....+.
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~-g~-~~~~~~~~~~la~~~----~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQH-DV-YHYALWSLLQQSEIL----FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhh-cc-hHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 345677888888888887753 22 233456778899877 489999999999999999987753333333344455
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+| .++...|++++|...+.+++.+.... .......++..+|.++...|++++|...+.++..+...
T Consensus 578 ~la----------~~~~~~G~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 578 IRA----------QLLWEWARLDEAEQCARKGLEVLSNY---QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHH----------HHHHHhcCHHHHHHHHHHhHHhhhcc---CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 667 66688999999999999999987643 12334567788999999999999999999999776433
Q ss_pred hcCCCchH---------------------------------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 165 VLGKDDYE---------------------------------------VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 165 ~~~~~~~~---------------------------------------~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
. + .+.. .......+|.++. ..|++++|...+++++...
T Consensus 645 ~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 645 G-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI-LLGQFDEAEIILEELNENA 721 (903)
T ss_pred c-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Confidence 1 0 0000 0111345667776 7777777777777777665
Q ss_pred hhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHH
Q psy4339 206 DNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEW 265 (303)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~ 265 (303)
+ ..+ .......++..+|.++...|+.++|.. +.+++...
T Consensus 722 ~--------------------~~g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 722 R--------------------SLR-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred H--------------------HhC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4 111 223456778889999999999999999 55665443
No 64
>KOG2003|consensus
Probab=99.23 E-value=1.9e-09 Score=89.96 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh----hhhhhhhhhhhhhHHHHhhhccc---cccHHHHHHhHHH
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL----KLFSASYSGLEYHYRDLKLFSAS---YSGLEYDYRGLIH 244 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~l~~~~~a~~~~~~~---~~~~~~~~~~la~ 244 (303)
....+...||..|. ...=+++|+.+|+++--+.|+. .-++.++.+.+++.+|+..+... .|....++.-|..
T Consensus 624 ~nie~iewl~ayyi-dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 624 CNIETIEWLAAYYI-DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred cchHHHHHHHHHHH-hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 33445556777776 6667778888888887776653 24677777778888887555433 3455566666666
Q ss_pred HHHhhhcHHHHHHHHHHH
Q psy4339 245 VYECLENFEKMTEFTNKL 262 (303)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~ 262 (303)
+.-..| ..+|.+|..++
T Consensus 703 i~~dlg-l~d~key~~kl 719 (840)
T KOG2003|consen 703 IAGDLG-LKDAKEYADKL 719 (840)
T ss_pred Hhcccc-chhHHHHHHHH
Confidence 655555 24455554444
No 65
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.22 E-value=3.4e-10 Score=82.65 Aligned_cols=104 Identities=19% Similarity=0.041 Sum_probs=88.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|........+| ..+...|++++|...+++++.. .|.....+.++|.++..+|++++|..++
T Consensus 13 ~p~~~~~~~~~a----------~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 13 DSEQLEQIYALA----------YNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred ChhhHHHHHHHH----------HHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454556677888 6668999999999999998885 3445677889999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++.+. |.....+..+|.++. ..|++++|+..++++++..+
T Consensus 75 ~~~~~~~--------p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 75 ALAAALD--------PDDPRPYFHAAECLL-ALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHhcC--------CCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc
Confidence 9998753 555677899999997 99999999999999999888
No 66
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.21 E-value=3.3e-10 Score=93.49 Aligned_cols=133 Identities=18% Similarity=0.103 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..+..+..+|.++ ...|+.++|+..|+++++. +|....+...++ ..+...|+++++.+
T Consensus 144 ~~~~~~~~~a~~~----~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~----------~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 144 DSARFWLALAEIY----EQLGDPDKALRDYRKALEL--------DPDDPDARNALA----------WLLIDMGDYDEARE 201 (280)
T ss_dssp T-HHHHHHHHHHH----HHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHH----------HHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHH----------HHHHHCCChHHHHH
Confidence 3455666666544 4666777777777766665 233233444445 33356666666555
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.+....... +++|. .+..+|.++..+|++++|+.++++++... |....++..+|.++. ..|+.
T Consensus 202 ~l~~~~~~~-----~~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~~--------p~d~~~~~~~a~~l~-~~g~~ 264 (280)
T PF13429_consen 202 ALKRLLKAA-----PDDPD---LWDALAAAYLQLGRYEEALEYLEKALKLN--------PDDPLWLLAYADALE-QAGRK 264 (280)
T ss_dssp HHHHHHHH------HTSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHHS--------TT-HHHHHHHHHHHT------
T ss_pred HHHHHHHHC-----cCHHH---HHHHHHHHhcccccccccccccccccccc--------ccccccccccccccc-ccccc
Confidence 555544432 11222 34456777777777777777777766532 333445566677775 67777
Q ss_pred HHHHHHHHHHHH
Q psy4339 192 HKAEKLYFRSIE 203 (303)
Q Consensus 192 ~~A~~~~~~al~ 203 (303)
++|..++++++.
T Consensus 265 ~~A~~~~~~~~~ 276 (280)
T PF13429_consen 265 DEALRLRRQALR 276 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 777777666654
No 67
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.21 E-value=3.2e-10 Score=88.01 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=99.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..++.++++..++++++. +|.....+..+|.+|...|++++|+..|++++.+. |....++.++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA 114 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALA 114 (198)
T ss_pred CchhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence 356778888889998885 45667789999999999999999999999999875 55567789999
Q ss_pred HHHHHhhcC--HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 182 SLYNYHMLE--YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 182 ~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
.++.+..|+ +++|...++++++..+ ....++..+|..+...|++++|+.++
T Consensus 115 ~aL~~~~g~~~~~~A~~~l~~al~~dP---------------------------~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 115 TVLYYQAGQHMTPQTREMIDKALALDA---------------------------NEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCC---------------------------CChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 975227787 5999999999998877 45567999999999999999999966
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+.+
T Consensus 168 ~~a 170 (198)
T PRK10370 168 QKV 170 (198)
T ss_pred HHH
Confidence 554
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.20 E-value=8.8e-10 Score=83.66 Aligned_cols=134 Identities=13% Similarity=-0.037 Sum_probs=97.2
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..+.|..+...+...+.. ......+..+.++| .++...|++++|+..|++++.+. ++++
T Consensus 11 ~~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~g----------~~~~~~g~~~~A~~~~~~al~l~-----~~~~ 69 (168)
T CHL00033 11 IDKTFTIVADILLRILPT------TSGEKEAFTYYRDG----------MSAQSEGEYAEALQNYYEAMRLE-----IDPY 69 (168)
T ss_pred cccccccchhhhhHhccC------CchhHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHhcc-----ccch
Confidence 344566666555433221 22334677888888 66689999999999999999873 3445
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....++.++|.++...|++++|+.++++++.+.... +......+.++.++|..+. ..|++++|...+.+++....
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICHYRGEQAI-EQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhhHHHH-HcccHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999874221 1112334455566666665 88899999999999988877
No 69
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.20 E-value=1.9e-08 Score=78.59 Aligned_cols=170 Identities=18% Similarity=0.050 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..++..|... ...|+|.+|+..|++.+..+ +.++....+...+| .++...|++++|+..
T Consensus 4 ~~~~lY~~a~~~----~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la----------~a~y~~~~y~~A~~~ 64 (203)
T PF13525_consen 4 TAEALYQKALEA----LQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLA----------YAYYKQGDYEEAIAA 64 (203)
T ss_dssp -HHHHHHHHHHH----HHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHH----------HHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHH----------HHHHHcCCHHHHHHH
Confidence 456788888777 59999999999999988774 44666778888899 778999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-----------cHHHHHHHHHHHHHHHHHhcCCCchHHH-------
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-----------KFDEAERMQLKAIAIKEKVLGKDDYEVG------- 174 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~------- 174 (303)
+++-++.+ |+++....++..+|.++..+. ...+|...|+..+..+ |+++...
T Consensus 65 ~~~fi~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~ 134 (203)
T PF13525_consen 65 YERFIKLY-----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLA 134 (203)
T ss_dssp HHHHHHH------TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHH
T ss_pred HHHHHHHC-----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHH
Confidence 99999875 567778888899999876654 3347888888777655 4433322
Q ss_pred -------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHH
Q psy4339 175 -------LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 175 -------~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 247 (303)
.--..+|..|. +.|++..|+..++.+++..| +.+....++..++..|.
T Consensus 135 ~l~~~la~~e~~ia~~Y~-~~~~y~aA~~r~~~v~~~yp------------------------~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 135 ELRNRLAEHELYIARFYY-KRGKYKAAIIRFQYVIENYP------------------------DTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTT-HHHHHHHHHHHHHHST------------------------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCC------------------------CCchHHHHHHHHHHHHH
Confidence 22346789996 99999999999999999888 33456677889999999
Q ss_pred hhhcHHHHH
Q psy4339 248 CLENFEKMT 256 (303)
Q Consensus 248 ~~g~~~~A~ 256 (303)
..|..+.|.
T Consensus 190 ~l~~~~~a~ 198 (203)
T PF13525_consen 190 KLGLKQAAD 198 (203)
T ss_dssp HTT-HHHHH
T ss_pred HhCChHHHH
Confidence 999988443
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.20 E-value=8.1e-10 Score=85.89 Aligned_cols=164 Identities=17% Similarity=0.101 Sum_probs=129.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+|....+ .+++..++ ..|+-+.+..+..++... ++.....+...| ......|+|.+
T Consensus 62 ~~p~d~~i-~~~a~a~~----~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~g----------k~~~~~g~~~~ 118 (257)
T COG5010 62 RNPEDLSI-AKLATALY----LRGDADSSLAVLQKSAIA--------YPKDRELLAAQG----------KNQIRNGNFGE 118 (257)
T ss_pred cCcchHHH-HHHHHHHH----hcccccchHHHHhhhhcc--------CcccHHHHHHHH----------HHHHHhcchHH
Confidence 35555566 77887774 788888888887775443 222223333355 55589999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+..++++... .|....+++.+|.+|.+.|++++|..-|.+++++. |....+.+|+|..+. -.
T Consensus 119 A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~-L~ 181 (257)
T COG5010 119 AVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLL-LR 181 (257)
T ss_pred HHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHH-Hc
Confidence 99999999985 45567789999999999999999999999999986 333456799999997 99
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 189 LEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
|+++.|..++..+....+ ....+..+|+.+.-.+|++++|...-
T Consensus 182 gd~~~A~~lll~a~l~~~---------------------------ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 182 GDLEDAETLLLPAYLSPA---------------------------ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred CCHHHHHHHHHHHHhCCC---------------------------CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999999875444 34456899999999999999998743
No 71
>KOG0553|consensus
Probab=99.18 E-value=5.9e-10 Score=88.32 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+..+-+-| +-....++|.+|+..|.+||.+ .|..+..|.|.|-+|.++|.++.|++-++.|
T Consensus 80 ~AE~LK~eG----------N~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 80 LAESLKNEG----------NKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESA 141 (304)
T ss_pred HHHHHHHHH----------HHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 455555556 6778999999999999999997 4556678999999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
+.+. |....+|..||.+|. .+|++++|++.|++++++.|+++
T Consensus 142 l~iD--------p~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 142 LSID--------PHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HhcC--------hHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcH
Confidence 9874 888999999999997 99999999999999999999555
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.17 E-value=2.2e-09 Score=78.35 Aligned_cols=103 Identities=18% Similarity=0.083 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|........+|..+ ...|++++|...+++++.. +|....++.++| .++...|++++|
T Consensus 13 ~p~~~~~~~~~a~~~----~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la----------~~~~~~~~~~~A 70 (135)
T TIGR02552 13 DSEQLEQIYALAYNL----YQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLA----------ACCQMLKEYEEA 70 (135)
T ss_pred ChhhHHHHHHHHHHH----HHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHHHHHHHH
Confidence 566678889999777 5899999999999998876 344567788889 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..++++++.. +|.....+..+|.++...|++++|+..++++++..
T Consensus 71 ~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 71 IDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999885 34456678899999999999999999999999875
No 73
>KOG0553|consensus
Probab=99.17 E-value=6.2e-10 Score=88.18 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..++.+-+-|+-. ...++|.+|+..|.+||++ +|.-+..|.+.| .+|.++|+++.|++
T Consensus 79 ~~AE~LK~eGN~~----m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRA----------AAy~~Lg~~~~AVk 136 (304)
T KOG0553|consen 79 ALAESLKNEGNKL----MKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRA----------AAYSKLGEYEDAVK 136 (304)
T ss_pred HHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHH----------HHHHHhcchHHHHH
Confidence 4567777888777 5899999999999999998 556668888999 78899999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
-++.|+.+ +|....+|..||.+|..+|++++|++.|++|+++. |.......+|..+-. .++..
T Consensus 137 Dce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~-~l~e~ 199 (304)
T KOG0553|consen 137 DCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD--------PDNESYKSNLKIAEQ-KLNEP 199 (304)
T ss_pred HHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC--------CCcHHHHHHHHHHHH-HhcCC
Confidence 99999997 67889999999999999999999999999999985 444455566666654 55544
Q ss_pred H
Q psy4339 192 H 192 (303)
Q Consensus 192 ~ 192 (303)
.
T Consensus 200 ~ 200 (304)
T KOG0553|consen 200 K 200 (304)
T ss_pred C
Confidence 4
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1.6e-08 Score=80.90 Aligned_cols=212 Identities=16% Similarity=0.154 Sum_probs=142.6
Q ss_pred HHHHHHHHHHhC-CCc--HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHH
Q psy4339 16 QLALKLKQVLFG-SEN--LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEE 92 (303)
Q Consensus 16 ~~al~~~~~~~~-~~~--~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 92 (303)
++|+.+.+.+.. ++- .....++..||.-| ...|-+|.|+..|....+.- .....++..+-
T Consensus 86 DRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy----m~aGl~DRAE~~f~~L~de~--------efa~~AlqqLl----- 148 (389)
T COG2956 86 DRAIRIHQTLLESPDLTFEQRLLALQQLGRDY----MAAGLLDRAEDIFNQLVDEG--------EFAEGALQQLL----- 148 (389)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcch--------hhhHHHHHHHH-----
Confidence 346666665542 222 23456888899777 68999999999998765531 11234455555
Q ss_pred HhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 93 IALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 93 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
.+|....+|++|++..++..++-.+ +.....+..|..+|..+....+++.|...+.+|++.. |.
T Consensus 149 -----~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--------~~ 212 (389)
T COG2956 149 -----NIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--------KK 212 (389)
T ss_pred -----HHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--------cc
Confidence 6668889999999998887776432 2355678889999999999999999999999998754 44
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh-----hhhhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHH
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL-----KLFSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIH 244 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~ 244 (303)
-..+-..+|.+.. ..|+|..|++.++.+++..++. +.+..+|..++........+ ....+. ..+-..++.
T Consensus 213 cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~ 290 (389)
T COG2956 213 CVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLAD 290 (389)
T ss_pred ceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHH
Confidence 4556678899998 9999999999999988776642 23555555555444433211 111111 123455666
Q ss_pred HHHhhhcHHHHHH-HHHHH
Q psy4339 245 VYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 245 ~~~~~g~~~~A~~-~~~~~ 262 (303)
.-....-.+.|.. ..+.+
T Consensus 291 lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 291 LIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHhhChHHHHHHHHHHH
Confidence 6666666777777 44554
No 75
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=7.3e-09 Score=86.14 Aligned_cols=151 Identities=9% Similarity=-0.016 Sum_probs=113.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG-RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
+|+....+++. -+|....++...|.++ ...| ++++++.++.+++.. +|....+++..++++
T Consensus 55 rAL~lt~~aI~-lnP~~ytaW~~R~~iL----~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l----- 116 (320)
T PLN02789 55 RALDLTADVIR-LNPGNYTVWHFRRLCL----EALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLA----- 116 (320)
T ss_pred HHHHHHHHHHH-HCchhHHHHHHHHHHH----HHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHH-----
Confidence 34444444332 2677888999999888 4677 689999999999876 455556777778444
Q ss_pred hhHHHHhhhh--HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 96 DSNELISVQF--YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 96 ~~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
...|+ +++++.++.++++. +|....++...|.++...|++++|++++.++++.. |..
T Consensus 117 -----~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------~~N 175 (320)
T PLN02789 117 -----EKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------VRN 175 (320)
T ss_pred -----HHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------CCc
Confidence 44554 36778888888875 46667899999999999999999999999999863 455
Q ss_pred HHHHHHHHHHHHHhh---cCH----HHHHHHHHHHHHhhhh
Q psy4339 174 GLSVGHLASLYNYHM---LEY----HKAEKLYFRSIEINDN 207 (303)
Q Consensus 174 ~~~~~~la~~~~~~~---g~~----~~A~~~~~~al~~~~~ 207 (303)
..+++..+.+.. .. |.+ ++++.+..+++.+.|+
T Consensus 176 ~sAW~~R~~vl~-~~~~l~~~~~~~e~el~y~~~aI~~~P~ 215 (320)
T PLN02789 176 NSAWNQRYFVIT-RSPLLGGLEAMRDSELKYTIDAILANPR 215 (320)
T ss_pred hhHHHHHHHHHH-hccccccccccHHHHHHHHHHHHHhCCC
Confidence 678888888885 65 333 4788888899988874
No 76
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.15 E-value=2.9e-08 Score=79.51 Aligned_cols=176 Identities=8% Similarity=-0.085 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..++..|... ...|+|++|+..|++.+... +..+....+...+| .+|...+++++|+..
T Consensus 31 ~~~~~Y~~A~~~----~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la----------~ayy~~~~y~~A~~~ 91 (243)
T PRK10866 31 PPSEIYATAQQK----LQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLI----------YAYYKNADLPLAQAA 91 (243)
T ss_pred CHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHH----------HHHHhcCCHHHHHHH
Confidence 455677778666 48999999999999988763 34566667788899 777999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh------------------cHHHHHHHHHHHHHHHHHhcCCCchHH-
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ------------------KFDEAERMQLKAIAIKEKVLGKDDYEV- 173 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------------~~~~A~~~~~~al~~~~~~~~~~~~~~- 173 (303)
+++.++.. |++|....++..+|.++...+ ...+|+..+++.++.+ |+++..
T Consensus 92 ~e~fi~~~-----P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~ 161 (243)
T PRK10866 92 IDRFIRLN-----PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTT 161 (243)
T ss_pred HHHHHHhC-----cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHH
Confidence 99999974 678888889999998865443 1245667777766654 333322
Q ss_pred -------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHH
Q psy4339 174 -------------GLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYR 240 (303)
Q Consensus 174 -------------~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~ 240 (303)
+.--..+|..|. +.|+|.-|+.-++.+++-.| +.+....++.
T Consensus 162 ~A~~rl~~l~~~la~~e~~ia~~Y~-~~~~y~AA~~r~~~v~~~Yp------------------------~t~~~~eal~ 216 (243)
T PRK10866 162 DATKRLVFLKDRLAKYELSVAEYYT-KRGAYVAVVNRVEQMLRDYP------------------------DTQATRDALP 216 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHHCC------------------------CCchHHHHHH
Confidence 122346788896 99999999999999998888 4456778899
Q ss_pred hHHHHHHhhhcHHHHHHHHHHH
Q psy4339 241 GLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 241 ~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.++..|...|..++|..+.+.+
T Consensus 217 ~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 217 LMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999999877665
No 77
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.14 E-value=1.2e-09 Score=77.81 Aligned_cols=105 Identities=14% Similarity=0.043 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.+++.+| ..+...|++++|+..+.+++... ++++....++..+|.++...|++++|+.++++++.
T Consensus 3 ~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 3 EAYYDAA----------LLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4556667 66689999999999999998752 34455567888999999999999999999999987
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 161 IKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.. ++++....++..+|.++. ..|++++|+.++++++...|
T Consensus 68 ~~-----p~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 68 KY-----PKSPKAPDALLKLGMSLQ-ELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HC-----CCCCcccHHHHHHHHHHH-HhCChHHHHHHHHHHHHHCc
Confidence 64 455556678999999997 99999999999999999888
No 78
>KOG1941|consensus
Probab=99.14 E-value=5.5e-08 Score=79.15 Aligned_cols=210 Identities=13% Similarity=0.052 Sum_probs=153.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch--hhhHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH--LLLTSAH 83 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~ 83 (303)
..|+.+.+.|+.|+++.... .|..-...++..||..+ ....++++|+-+..+|.++.....-++. .....++
T Consensus 136 s~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf----~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLF----AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHH----HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 34666777777777775543 23233457888899544 7899999999999999999776531221 1244556
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
+.++ ..+..+|+...|.++.+++.++.-+. ++.+..+....-+|.+|...|+.+.|..-|+.|..+..
T Consensus 210 yhma----------ValR~~G~LgdA~e~C~Ea~klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 210 YHMA----------VALRLLGRLGDAMECCEEAMKLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred HHHH----------HHHHHhcccccHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 6666 67799999999999999999997665 57788888999999999999999999999999998876
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHH-----HHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHH
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHK-----AEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYD 238 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~ 238 (303)
.. .+......++...|.+.. ...-..+ |++.-++++++.. + .|-.+ .+..+
T Consensus 278 ~~--gdrmgqv~al~g~Akc~~-~~r~~~k~~~Crale~n~r~levA~-------------------~-IG~K~-~vlK~ 333 (518)
T KOG1941|consen 278 SL--GDRMGQVEALDGAAKCLE-TLRLQNKICNCRALEFNTRLLEVAS-------------------S-IGAKL-SVLKL 333 (518)
T ss_pred hh--hhhHHHHHHHHHHHHHHH-HHHHhhcccccchhHHHHHHHHHHH-------------------H-hhhhH-HHHHH
Confidence 64 344445566777777775 5555555 8888888888887 2 22221 35566
Q ss_pred HHhHHHHHHhhhcHHHHHH
Q psy4339 239 YRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 239 ~~~la~~~~~~g~~~~A~~ 257 (303)
+..++.+|..+|.-++-..
T Consensus 334 hcrla~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 334 HCRLASIYRSKGLQDELRA 352 (518)
T ss_pred HHHHHHHHHhccchhHHHH
Confidence 7788888888876655443
No 79
>KOG1129|consensus
Probab=99.14 E-value=9.2e-11 Score=93.68 Aligned_cols=165 Identities=11% Similarity=-0.031 Sum_probs=121.5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhh
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALD 96 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 96 (303)
.|+.++.+.+ +..|..+..+..++.++ ..++++++|.++|+.+++. +|....+..-+|
T Consensus 274 ~AL~~~~~gl-d~fP~~VT~l~g~ARi~----eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia--------- 331 (478)
T KOG1129|consen 274 RALLVIGEGL-DSFPFDVTYLLGQARIH----EAMEQQEDALQLYKLVLKL--------HPINVEAIACIA--------- 331 (478)
T ss_pred HHHHHHhhhh-hcCCchhhhhhhhHHHH----HHHHhHHHHHHHHHHHHhc--------CCccceeeeeee---------
Confidence 4566655544 23566777888888877 6899999999999998876 333333333344
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
..|+..++.+-|+.+|++.+.+ |..+| ..+.|+|.|+..-++++-++..|++|+.... ++...+.+
T Consensus 332 -~~yfY~~~PE~AlryYRRiLqm-----G~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDv 397 (478)
T KOG1129|consen 332 -VGYFYDNNPEMALRYYRRILQM-----GAQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADV 397 (478)
T ss_pred -eccccCCChHHHHHHHHHHHHh-----cCCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----Ccchhhhh
Confidence 6667788899999999998885 33344 4578899999999999999999999988763 33556788
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYH 221 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~ 221 (303)
|+|+|.+.. ..|++.-|..+|+-++...+ +-+.++++|+-+
T Consensus 398 WYNlg~vaV-~iGD~nlA~rcfrlaL~~d~---~h~ealnNLavL 438 (478)
T KOG1129|consen 398 WYNLGFVAV-TIGDFNLAKRCFRLALTSDA---QHGEALNNLAVL 438 (478)
T ss_pred hhccceeEE-eccchHHHHHHHHHHhccCc---chHHHHHhHHHH
Confidence 899999988 89999999888888876544 556667776533
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.13 E-value=1.1e-08 Score=88.63 Aligned_cols=187 Identities=7% Similarity=-0.026 Sum_probs=132.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+|+++.|..++.++.+.. ++. ... .....+ ..+...|++++|...+++..+. .
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~-----~~~-~~~-~~l~~a----------~l~l~~g~~~~Al~~l~~~~~~--------~ 183 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA-----DND-QLP-VEITRV----------RIQLARNENHAARHGVDKLLEV--------A 183 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC-----Ccc-hHH-HHHHHH----------HHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 48999999999999997651 111 111 111224 5568999999999999998885 3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-------------------HH---------------hcCCCchHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK-------------------EK---------------VLGKDDYEVG 174 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------~~---------------~~~~~~~~~~ 174 (303)
|....++..++.+|...|++++|++.+.+..+.. .. ..+...|...
T Consensus 184 P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~ 263 (398)
T PRK10747 184 PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV 263 (398)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH
Confidence 4444567788999999999999997776554210 00 0011123344
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh--hhhHHHH---hhhccccccHHHHHHhHHHHHHhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL--EYHYRDL---KLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l--~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
.+...+|..+. ..|+.++|...++++++ .+.++.+...+..+ +...+++ +.+.+.+|+....+..+|.++...
T Consensus 264 ~~~~~~A~~l~-~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 264 ALQVAMAEHLI-ECDDHDTAQQIILDGLK-RQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 56678899998 99999999999999998 45466555554444 4444443 445566888888899999999999
Q ss_pred hcHHHHHHHHHHH
Q psy4339 250 ENFEKMTEFTNKL 262 (303)
Q Consensus 250 g~~~~A~~~~~~~ 262 (303)
|++++|.++++.+
T Consensus 342 ~~~~~A~~~le~a 354 (398)
T PRK10747 342 GEWQEASLAFRAA 354 (398)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999966555
No 81
>KOG2076|consensus
Probab=99.13 E-value=7.3e-09 Score=92.91 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL 210 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 210 (303)
....+.+++..+...|++.+|++++....... ....+..|..+|.+|. .+|.+++|+++|++++...|
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~-~l~e~e~A~e~y~kvl~~~p---- 480 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYM-ELGEYEEAIEFYEKVLILAP---- 480 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHH-HHhhHHHHHHHHHHHHhcCC----
Confidence 34456677777777777777777776655321 1223556778888887 78888888888888877766
Q ss_pred hhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 211 FSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 211 ~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+...+...|+.++..+|++++|.+....
T Consensus 481 -----------------------~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 481 -----------------------DNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred -----------------------CchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 5556677888888888888888774433
No 82
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.12 E-value=1.3e-08 Score=77.59 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=87.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
...+..+..+..+|..+ ...|++++|+.+|+++++... +.+....++.++| .++...|+++
T Consensus 29 ~~~~~~a~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la----------~~~~~~g~~~ 89 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSA----QADGEYAEALENYEEALKLEE-----DPNDRSYILYNMG----------IIYASNGEHD 89 (172)
T ss_pred ccHhhhHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHH----------HHHHHcCCHH
Confidence 44567788999999766 589999999999999998732 2333457888899 6679999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-------KFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
+|+.++++++... |.....+..+|.++...| ++++|+..++++++..++....++.
T Consensus 90 ~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 90 KALEYYHQALELN--------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 9999999999962 334555667777777655 4667777777777776665544433
No 83
>KOG1839|consensus
Probab=99.12 E-value=1.6e-09 Score=100.85 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=180.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|.+.+|.. .-+++.......+.-+|..+..+..++ ..+...|++++|+.+-+++.-+.++..|.++
T Consensus 943 ~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La----------~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 943 LLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLA----------KLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHH----------HHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 36888898998 888888988888888999999999999 6669999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
+.....+.+++......++...|...+.++..+..-.+|+++|..+.+..+++.++. ..++++.|+.+.+.|++...
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~-~v~e~d~al~~le~A~a~~~-- 1088 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL-GVEEADTALRYLESALAKNK-- 1088 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh-hHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999888889999999999999999997 99999999999999999888
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccc
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEWKILRETNELNEPECHIDY 283 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (303)
+..++.......++..++.++...|++..|....+.. ..+....+|.+|+.+.+.
T Consensus 1089 -----------------~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t---~~iy~~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1089 -----------------KVLGPKELETALSYHALARLFESMKDFRNALEHEKVT---YGIYKEQLGPDHSRTKES 1143 (1236)
T ss_pred -----------------hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH---HHHHHHhhCCCcccchhh
Confidence 7788777788889999999999999999999955444 456667888888866553
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=5.4e-09 Score=89.36 Aligned_cols=172 Identities=16% Similarity=0.111 Sum_probs=127.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|+.+..+..+|..+ ...|+.+.+...+.++....... ..........| ..+...|++++|
T Consensus 2 dp~~~~a~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a----------~~~~~~g~~~~A 62 (355)
T cd05804 2 DPDFALGHAAAALLL----LLGGERPAAAAKAAAAAQALAAR-----ATERERAHVEA----------LSAWIAGDLPKA 62 (355)
T ss_pred CCccHHHHHHHHHHH----HhcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHH----------HHHHHcCCHHHH
Confidence 577888999999544 68899999988888877764432 22233344455 455889999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
...++++++.. |+++ .++.. +..+...|++..+.....+++.. ..+.+|........+|.++. .+|
T Consensus 63 ~~~~~~~l~~~-----P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~-~~G 128 (355)
T cd05804 63 LALLEQLLDDY-----PRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLE-EAG 128 (355)
T ss_pred HHHHHHHHHHC-----CCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHH-HcC
Confidence 99999999852 2222 33333 66666666666665555555543 23566777888889999998 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
++++|+..+++++++.| ....++..+|.++...|++++|..+++.
T Consensus 129 ~~~~A~~~~~~al~~~p---------------------------~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 129 QYDRAEEAARRALELNP---------------------------DDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred CHHHHHHHHHHHHhhCC---------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999887 3355688899999999999999996543
No 85
>KOG1839|consensus
Probab=99.09 E-value=4.4e-09 Score=98.03 Aligned_cols=190 Identities=24% Similarity=0.158 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
.-+++..+....+..||+.+.++..|+..++ ..|++++|+.+-.++.-+.++..|.++|.....+.+++
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~~----~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla------- 1022 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLSN----RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA------- 1022 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHHh----hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH-------
Confidence 4466668888888899999999999998885 99999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
......++...|+..+.++..+..-..++++|..+.+..+++.++...++++.|+++.+.|....++..|+.+..++
T Consensus 1023 ---l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1023 ---LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred ---HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 44477779999999999999988777888999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYD 238 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~ 238 (303)
..+..++..+. ..|++..|....+....+.. ..++.++.....+
T Consensus 1100 ~~~~~~a~l~~-s~~dfr~al~~ek~t~~iy~-------------------~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1100 LSYHALARLFE-SMKDFRNALEHEKVTYGIYK-------------------EQLGPDHSRTKES 1143 (1236)
T ss_pred hHHHHHHHHHh-hhHHHHHHHHHHhhHHHHHH-------------------HhhCCCcccchhh
Confidence 99999999998 99999999999999999999 8888887765433
No 86
>KOG0624|consensus
Probab=99.08 E-value=2.1e-08 Score=81.00 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.|+.+..+..-+.||...|+..+|+.-++.+-++. . +....++.++.++ |..|+.+.++.-.++++++.|+
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~---DnTe~~ykis~L~-Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----Q---DNTEGHYKISQLL-YTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHH-HhhhhHHHHHHHHHHHHccCcc
Confidence 45556667777888888888888888887776653 2 2335688999999 5999999999999999999998
Q ss_pred hhhhhhhhhhh-------hhhH-----------------------------------------------HHH---hhhcc
Q psy4339 208 LKLFSASYSGL-------EYHY-----------------------------------------------RDL---KLFSA 230 (303)
Q Consensus 208 ~~~~~~~~~~l-------~~~~-----------------------------------------------~a~---~~~~~ 230 (303)
|...--.|..+ +... +|+ +..-.
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 76544444333 1111 122 11122
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
..|+.+.++...|.+|.....|+.|+. |.++.
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 356678889999999999999999999 54443
No 87
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.08 E-value=3.2e-08 Score=85.72 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=106.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH--------
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLS-------- 120 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------- 120 (303)
...|++++|+..+++..+. .|....++..++ .+|...|++++|.+.+.+..+..
T Consensus 164 l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~----------~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 164 LARNENHAARHGVDKLLEV--------APRHPEVLRLAE----------QAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 5899999999999998776 344446666677 66789999999996666554310
Q ss_pred -----------HH---------------hhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH---------h
Q psy4339 121 -----------LK---------------HFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK---------V 165 (303)
Q Consensus 121 -----------~~---------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------~ 165 (303)
.. ......|....+...+|..+...|+.++|...++++++.... .
T Consensus 226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l 305 (398)
T PRK10747 226 MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL 305 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc
Confidence 00 001122334556778899999999999999999988762100 0
Q ss_pred --------------cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc
Q psy4339 166 --------------LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS 231 (303)
Q Consensus 166 --------------~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 231 (303)
.-..+|+....+..+|.++. ..|++++|.++|+++++..|
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~-~~~~~~~A~~~le~al~~~P------------------------- 359 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM-KHGEWQEASLAFRAALKQRP------------------------- 359 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC-------------------------
Confidence 00112222334445555554 55555555555555554444
Q ss_pred cccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 232 YSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
+. ..+..++.++...|+.++|..+++
T Consensus 360 --~~-~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 360 --DA-YDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred --CH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33 335679999999999999999554
No 88
>KOG0548|consensus
Probab=99.07 E-value=1.2e-08 Score=86.67 Aligned_cols=146 Identities=21% Similarity=0.196 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh--C----------------CcchhhhHHHHHHHHHHHHHHh
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL--L----------------PENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~--~----------------~~~~~~~~~~~~~la~~~~~~~ 94 (303)
++.++..+|..+ ..+++++.|+.+|++++.-.+.. + .-..|..+.....-|
T Consensus 297 Iak~~~r~g~a~----~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kG------- 365 (539)
T KOG0548|consen 297 IAKALARLGNAY----TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKG------- 365 (539)
T ss_pred HHHHHHHhhhhh----hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHH-------
Confidence 566777788766 68899999999999988654330 0 011222233333334
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
+.++..|+|..|+..|.+|+.. .|.....|.|.|-||..+|.+..|+...+.++++ +|...
T Consensus 366 ---ne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~ 426 (539)
T KOG0548|consen 366 ---NEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFI 426 (539)
T ss_pred ---HHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHH
Confidence 7779999999999999998884 4777889999999999999999999999999986 48888
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
..|..-|.++. .+.+|++|.+.|+++++..++..
T Consensus 427 kgy~RKg~al~-~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 427 KAYLRKGAALR-AMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCchhH
Confidence 99999999997 99999999999999999888433
No 89
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.06 E-value=3.8e-08 Score=72.66 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=95.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++...+...+++.++- .++.+....+...+| ..+...|++++|...|++++... +++.
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA----------~~~~~~g~~~~A~~~l~~~~~~~-----~d~~ 82 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLA----------KAAYEQGDYDEAKAALEKALANA-----PDPE 82 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHhhC-----CCHH
Confidence 578888877766665543 234445566677778 77799999999999999999842 3444
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
....+...+|.++..+|++++|+..++.. ++.+........+|.++. ..|++++|+..|++|+
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~-~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYL-AQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHH-HCCCHHHHHHHHHHhC
Confidence 55667889999999999999999998652 233445667788999997 9999999999999875
No 90
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.04 E-value=1.7e-09 Score=68.91 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML-EYHKAEKLYFRSIEIND 206 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-~~~~A~~~~~~al~~~~ 206 (303)
+.++..+|.++...|++++|+.+|++++++. |....+++++|.++. .+| ++++|+..+++++++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 5678999999999999999999999999874 666789999999997 999 79999999999998865
No 91
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.03 E-value=9.1e-08 Score=83.27 Aligned_cols=218 Identities=10% Similarity=-0.038 Sum_probs=141.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|.+...++.+. .|.....+...|.+. ..+|+++.|..++.++.+.. +++. ..+..
T Consensus 97 ~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa----~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~ 157 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAA----QQRGDEARANQHLEEAAELA-----GNDN--ILVEI 157 (409)
T ss_pred CCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHH
Confidence 34566777777666554 122223344455555 47899999999999886541 1111 11222
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH---
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI--- 161 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 161 (303)
..+ .++...|+++.|...+++.++. .|....++..++.++...|++++|.+.+.+..+.
T Consensus 158 ~~a----------~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 158 ART----------RILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHH----------HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 234 4557889999999998888775 2333456778889999999999888877666532
Q ss_pred ----H---------------HH---------hcCCCch----HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 162 ----K---------------EK---------VLGKDDY----EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 162 ----~---------------~~---------~~~~~~~----~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
. .. .. ...| ........+|..+. ..|++++|...++++++..++++
T Consensus 220 ~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~-~~~p~~~~~~~~l~~~~a~~l~-~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 220 DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW-KNQPRHRRHNIALKIALAEHLI-DCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHCCHHHhCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhCCCcc
Confidence 0 00 00 0112 24567788899998 99999999999999999888765
Q ss_pred hhh----hhhhhh--hh---hHHHHhhhccccccHH--HHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 210 LFS----ASYSGL--EY---HYRDLKLFSASYSGLE--YDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 210 ~~~----~~~~~l--~~---~~~a~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
... ..+..+ +. ..+.++..-..+|+.. .....+|.++...|++++|.++++.
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 311 111111 12 2233344445566666 7788999999999999999998773
No 92
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.03 E-value=4.9e-08 Score=74.36 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=84.0
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHH
Q psy4339 74 ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAER 153 (303)
Q Consensus 74 ~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 153 (303)
...+..+..+.++| ..+...|++++|+.+|++++.... +++....++.++|.++...|++++|+.
T Consensus 29 ~~~~~~a~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~ 93 (172)
T PRK02603 29 NKKAKEAFVYYRDG----------MSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALE 93 (172)
T ss_pred ccHhhhHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44566778899999 666999999999999999998642 334456789999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHHhhh
Q psy4339 154 MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE-------YHKAEKLYFRSIEIND 206 (303)
Q Consensus 154 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~-------~~~A~~~~~~al~~~~ 206 (303)
++++++.+. |.....+..+|.++. ..|+ +++|+..++++++...
T Consensus 94 ~~~~al~~~--------p~~~~~~~~lg~~~~-~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 94 YYHQALELN--------PKQPSALNNIAVIYH-KRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred HHHHHHHhC--------cccHHHHHHHHHHHH-HcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 999999863 444566778888886 7665 5555555555555544
No 93
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.01 E-value=1.2e-08 Score=72.61 Aligned_cols=104 Identities=11% Similarity=0.096 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..++.+|..+ ...|++++|+..+.+++... ++++....++..+| .++...|++++|+.+++
T Consensus 3 ~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~----------~~~~~~~~~~~A~~~~~ 63 (119)
T TIGR02795 3 EAYYDAALLV----LKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLG----------EAYYAQGKYADAAKAFL 63 (119)
T ss_pred HHHHHHHHHH----HHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHH----------HHHHhhccHHHHHHHHH
Confidence 4678888777 59999999999999998762 34444567788899 77799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+++... ++++....++..+|.++..+|++++|+.+++++++..
T Consensus 64 ~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 64 AVVKKY-----PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHC-----CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 999853 4455556778999999999999999999999998864
No 94
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.00 E-value=9.1e-09 Score=68.33 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
+|+++.|+.+++++++... .++ ....+..+|.||...|+|++|+..+++ .... +........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHH
Confidence 6899999999999999742 123 455677899999999999999999998 4332 334566677899
Q ss_pred HHHHhhcCHHHHHHHHHHH
Q psy4339 183 LYNYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~a 201 (303)
++. .+|++++|+..++++
T Consensus 67 ~~~-~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLL-KLGKYEEAIKALEKA 84 (84)
T ss_dssp HHH-HTT-HHHHHHHHHHH
T ss_pred HHH-HhCCHHHHHHHHhcC
Confidence 996 999999999999875
No 95
>KOG0550|consensus
Probab=99.00 E-value=1.2e-08 Score=84.14 Aligned_cols=175 Identities=15% Similarity=0.008 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|....+...-+.|+ ...|++++|.+.--..+++ ++.....+..-| .++...++.+.|.
T Consensus 166 pac~~a~~lka~cl----~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg----------~~~yy~~~~~ka~ 223 (486)
T KOG0550|consen 166 PACFKAKLLKAECL----AFLGDYDEAQSEAIDILKL--------DATNAEALYVRG----------LCLYYNDNADKAI 223 (486)
T ss_pred chhhHHHHhhhhhh----hhcccchhHHHHHHHHHhc--------ccchhHHHHhcc----------cccccccchHHHH
Confidence 55555666666666 6899999998766655554 445566667777 6668899999999
Q ss_pred HHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFG----ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186 (303)
Q Consensus 111 ~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 186 (303)
..|++++.+-..... ...|......-.-|+-..+.|++.+|.++|.++|.+... +....+..|.+.|.+..
T Consensus 224 ~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~- 298 (486)
T KOG0550|consen 224 NHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNI- 298 (486)
T ss_pred HHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhc-
Confidence 999999986322110 012334455667788889999999999999999988632 23446788999999998
Q ss_pred hhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 187 HMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
++|+.++|+.-++.++++.+ ....++...|.++...++|++|.+.+
T Consensus 299 rLgrl~eaisdc~~Al~iD~---------------------------syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALKIDS---------------------------SYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred ccCCchhhhhhhhhhhhcCH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 56667777777777777777777733
No 96
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.99 E-value=7e-08 Score=71.27 Aligned_cols=120 Identities=15% Similarity=0.000 Sum_probs=92.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..++...+...+++.+.- .++.+....+...+|.++...|++++|...|++++... ++++....+...+|
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHH
Confidence 466777776666665553 24455566788899999999999999999999998742 34455566788999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 182 SLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
.++. .+|++++|+..++.+ .+ .+....+...+|.++...|++++|...++
T Consensus 93 ~~~~-~~~~~d~Al~~L~~~---~~-------------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILL-QQGQYDEALATLQQI---PD-------------------------EAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHH-HcCCHHHHHHHHHhc---cC-------------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9997 999999999998652 11 22345567789999999999999999543
No 97
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.99 E-value=5.3e-08 Score=90.53 Aligned_cols=192 Identities=8% Similarity=-0.081 Sum_probs=125.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.|..+...+..+.+. ...|+++.|+..++++++.. +.++. .++ .+. .++...|+.++|
T Consensus 30 ~p~~~~~~y~~aii~----~r~Gd~~~Al~~L~qaL~~~-----P~~~~--av~-dll----------~l~~~~G~~~~A 87 (822)
T PRK14574 30 NPAMADTQYDSLIIR----ARAGDTAPVLDYLQEESKAG-----PLQSG--QVD-DWL----------QIAGWAGRDQEV 87 (822)
T ss_pred CccchhHHHHHHHHH----HhCCCHHHHHHHHHHHHhhC-----ccchh--hHH-HHH----------HHHHHcCCcHHH
Confidence 344555667777555 58999999999999998772 22221 111 333 444677999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
+.++++++. + .+.....+..+|.++..+|++++|++.|+++++.. |....++..++.++. ..+
T Consensus 88 ~~~~eka~~-------p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------P~n~~~l~gLa~~y~-~~~ 150 (822)
T PRK14574 88 IDVYERYQS-------S-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------PTNPDLISGMIMTQA-DAG 150 (822)
T ss_pred HHHHHHhcc-------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHh-hcC
Confidence 999999882 1 22233445566889999999999999999998764 333445567788887 899
Q ss_pred CHHHHHHHHHHHHHhhhhhhhh---hhhhhhhhhhHHHH---hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLF---SASYSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~---~~~~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
+.++|+..++++....+..... +..+...+...+|+ +..-...|.....+..+..+....|-...|.+..+
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999988877753321 11111112222343 33333456666677777777777777777776443
No 98
>PLN02789 farnesyltranstransferase
Probab=98.99 E-value=1.3e-07 Score=78.74 Aligned_cols=136 Identities=10% Similarity=0.008 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEAE 110 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A~ 110 (303)
+...++..+-.++ ...+++++|+..+.+++++ +|....++...+.+ +...| .+++++
T Consensus 35 ~~~~a~~~~ra~l----~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~i----------L~~L~~~l~eeL 92 (320)
T PLN02789 35 EFREAMDYFRAVY----ASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLC----------LEALDADLEEEL 92 (320)
T ss_pred HHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHH----------HHHcchhHHHHH
Confidence 3444554444344 5788999999999999988 56666788888844 46666 689999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF--DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
..+.+++.. +|....++++.+.++..+|+. ++++.++.+++++. |....++...|.++. ..
T Consensus 93 ~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w~l~-~l 155 (320)
T PLN02789 93 DFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQWVLR-TL 155 (320)
T ss_pred HHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHHHHH-Hh
Confidence 999999985 455566789999999888874 67888888888753 666789999999998 99
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
|++++|++++.+++++.+
T Consensus 156 ~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 156 GGWEDELEYCHQLLEEDV 173 (320)
T ss_pred hhHHHHHHHHHHHHHHCC
Confidence 999999999999998877
No 99
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=3.7e-07 Score=80.51 Aligned_cols=133 Identities=11% Similarity=-0.001 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh-
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK- 209 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~- 209 (303)
...+++.+|..|...|++++|+++.++||+. .|.....+...|.++. +.|++.+|...++.|-.+...+.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHH
Confidence 3577889999999999999999999999975 3777889999999998 99999999999999998887533
Q ss_pred ---hhhhhhhhhhhhHHHHhh---hcccc--cc-------HHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHHHHHhhh
Q psy4339 210 ---LFSASYSGLEYHYRDLKL---FSASY--SG-------LEYDYRGLIHVYECLENFEKMTE-FTNKLSEWKILRETN 272 (303)
Q Consensus 210 ---~~~~~~~~l~~~~~a~~~---~~~~~--~~-------~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~ 272 (303)
..+..+.+-+...+|.+. +.... |. ..+.....|.+|.++|++..|++ +.....++.+..+.+
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 234444444556666432 22221 11 23445678999999999999999 666666666655433
No 100
>KOG0550|consensus
Probab=98.98 E-value=3.2e-08 Score=81.74 Aligned_cols=168 Identities=18% Similarity=0.113 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
..|.++--.++.. ++..+.++.--|.++| ..++.+.|+.+|++++.+ ++++.....+.... ..+..+..
T Consensus 186 ~~a~~ea~~ilkl-d~~n~~al~vrg~~~y----y~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~-k~le~~k~ 254 (486)
T KOG0550|consen 186 DEAQSEAIDILKL-DATNAEALYVRGLCLY----YNDNADKAINHFQQALRL-----DPDHQKSKSASMMP-KKLEVKKE 254 (486)
T ss_pred hhHHHHHHHHHhc-ccchhHHHHhcccccc----cccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhH-HHHHHHHh
Confidence 3344443333332 3556777777887786 899999999999999987 33443322222211 11111211
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 96 DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
..+-....|+|.+|.+.|..+|.+-.. +....+..|.+.|.+...+|+..+|+.-++.|+.+. +..+.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syik 322 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIK 322 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHH
Confidence 116668999999999999999997432 233567889999999999999999999999999875 77889
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
++...|.++. .+++|++|.+.+++|++...+
T Consensus 323 all~ra~c~l-~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHL-ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhccc
Confidence 9999999998 999999999999999987764
No 101
>KOG4162|consensus
Probab=98.98 E-value=2.1e-07 Score=82.55 Aligned_cols=121 Identities=13% Similarity=-0.017 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh--
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL-- 210 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 210 (303)
..+...|..+...++.++|..++.++-.+. |.....++..|.++. ..|++.+|.+.|..|+.+.|+|+.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~ 721 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSM 721 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence 345577888888889999999999987765 777889999999998 999999999999999999998874
Q ss_pred --hhhhhhhhhhhHHH-----HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 211 --FSASYSGLEYHYRD-----LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 211 --~~~~~~~l~~~~~a-----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++..+..+|.-.-+ +...-.-+|....+|+.+|.++..+|+.+.|.+++++.
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 45555555422111 12222346777888999999999999999999977665
No 102
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.97 E-value=8.4e-08 Score=83.48 Aligned_cols=201 Identities=10% Similarity=-0.019 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH--HH---
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA--LI--- 89 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~--- 89 (303)
+++|++..+.... ..|+...++..++.++ ...|++++|...+.+..+.. . .+.+.......... .+
T Consensus 169 ~~~Al~~l~~l~~-~~P~~~~~l~ll~~~~----~~~~d~~~a~~~l~~l~k~~--~--~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 169 LHAARHGVDKLLE-MAPRHKEVLKLAEEAY----IRSGAWQALDDIIDNMAKAG--L--FDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHcC--C--CCHHHHHHHHHHHHHHHHHHH
Confidence 4444444444332 2355556777888666 69999999999888776541 0 11111111100000 00
Q ss_pred ------------HHHHh--------h--hh-HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh
Q psy4339 90 ------------LEEIA--------L--DS-NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ 146 (303)
Q Consensus 90 ------------~~~~~--------~--~~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 146 (303)
+.... + .. ..+...|++++|.+.++++++.. ++++..... .-........+
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~ 313 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPE 313 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCC
Confidence 00000 0 00 34455555555555555555531 111111000 11111222234
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH--HHHhhhhhhhhhhhhhhhhhhHHH
Q psy4339 147 KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR--SIEINDNLKLFSASYSGLEYHYRD 224 (303)
Q Consensus 147 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~--al~~~~~~~~~~~~~~~l~~~~~a 224 (303)
+.+++++.++++++.. +++|. ......+|.++. ..|++++|.++|++ +++..|
T Consensus 314 ~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~~~p------------------ 368 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLM-KHGEFIEAADAFKNVAACKEQL------------------ 368 (409)
T ss_pred ChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcCC------------------
Confidence 4455555555544322 22232 245556677774 67777777777763 333333
Q ss_pred HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHH-HHHHHHH
Q psy4339 225 LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEF-TNKLSEW 265 (303)
Q Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~ 265 (303)
+... +..+|.++...|+.++|.++ .+.+...
T Consensus 369 ---------~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 369 ---------DAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred ---------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3333 55899999999999999994 4544333
No 103
>KOG1174|consensus
Probab=98.96 E-value=4.8e-08 Score=80.74 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=88.3
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++|..|+.+-+++++. +|.....+...| ..+...|+.++|.-.|+.|..+ -|
T Consensus 312 ~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG----------~lL~~~~R~~~A~IaFR~Aq~L--------ap 365 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDS--------EPRNHEALILKG----------RLLIALERHTQAVIAFRTAQML--------AP 365 (564)
T ss_pred hhhhHHHHHHHHHHHhcc--------CcccchHHHhcc----------HHHHhccchHHHHHHHHHHHhc--------ch
Confidence 455555555555555554 222233444444 3335555555555555555554 23
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh------cC----------------------CCchHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV------LG----------------------KDDYEVGLSVGHLA 181 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~----------------------~~~~~~~~~~~~la 181 (303)
-...+|..|-.+|...|++.||...-..++...... +| .-.|....+...+|
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHH
Confidence 334455555555555555555555554444433110 00 01244455556666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHH-HH
Q psy4339 182 SLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEF-TN 260 (303)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~ 260 (303)
.++. ..|++.+++.++++.+.+.+ + ...+..||.++..++.+.+|.++ ..
T Consensus 446 EL~~-~Eg~~~D~i~LLe~~L~~~~---------------------------D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 446 ELCQ-VEGPTKDIIKLLEKHLIIFP---------------------------D-VNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHH-hhCccchHHHHHHHHHhhcc---------------------------c-cHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6665 66667777777766666555 2 23477899999999999999994 44
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
++
T Consensus 497 AL 498 (564)
T KOG1174|consen 497 AL 498 (564)
T ss_pred HH
Confidence 44
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.95 E-value=1.5e-08 Score=86.02 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=81.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
......|+|++|+..|.++++. .|....++.++|.+|..+|++++|+..+++++.+. |....++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~~~~a~ 73 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--------PSLAKAY 73 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHH
Confidence 5557899999999999999996 34456688999999999999999999999999874 5556789
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+|.++. .+|++++|+..|++++.+.+
T Consensus 74 ~~lg~~~~-~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 74 LRKGTACM-KLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHhCC
Confidence 99999996 99999999999999999888
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.93 E-value=1.8e-08 Score=78.51 Aligned_cols=133 Identities=17% Similarity=0.080 Sum_probs=107.7
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+|.....+..+|... ...|+|.+|+..++++... .|.-+..++.+| .+|.+.|++++
T Consensus 95 ~~~~d~~ll~~~gk~~----~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lg----------aaldq~Gr~~~ 152 (257)
T COG5010 95 AYPKDRELLAAQGKNQ----IRNGNFGEAVSVLRKAARL--------APTDWEAWNLLG----------AALDQLGRFDE 152 (257)
T ss_pred cCcccHHHHHHHHHHH----HHhcchHHHHHHHHHHhcc--------CCCChhhhhHHH----------HHHHHccChhH
Confidence 3444555665577666 6999999999999999887 555678889999 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|..-|.+++++.. +. ..+.+|+|..+.-.|+++.|..++..+... .+....+-.|++.+.. .+
T Consensus 153 Ar~ay~qAl~L~~-----~~---p~~~nNlgms~~L~gd~~~A~~lll~a~l~--------~~ad~~v~~NLAl~~~-~~ 215 (257)
T COG5010 153 ARRAYRQALELAP-----NE---PSIANNLGMSLLLRGDLEDAETLLLPAYLS--------PAADSRVRQNLALVVG-LQ 215 (257)
T ss_pred HHHHHHHHHHhcc-----CC---chhhhhHHHHHHHcCCHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHh-hc
Confidence 9999999999842 23 346789999999999999999999988653 1334456789999998 99
Q ss_pred cCHHHHHHHHHH
Q psy4339 189 LEYHKAEKLYFR 200 (303)
Q Consensus 189 g~~~~A~~~~~~ 200 (303)
|++++|.....+
T Consensus 216 g~~~~A~~i~~~ 227 (257)
T COG5010 216 GDFREAEDIAVQ 227 (257)
T ss_pred CChHHHHhhccc
Confidence 999999887654
No 106
>KOG2076|consensus
Probab=98.91 E-value=1.7e-07 Score=84.35 Aligned_cols=187 Identities=12% Similarity=0.021 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+..+...|+.+| ..|++++|+..+.+++.. +|....++..|| .+|..+|+.++|....
T Consensus 139 l~~ll~eAN~lf----arg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~----------~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 139 LRQLLGEANNLF----ARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLG----------EIYEQRGDIEKALNFW 196 (895)
T ss_pred HHHHHHHHHHHH----HhCCHHHHHHHHHHHHHh--------CccchhhHHHHH----------HHHHHcccHHHHHHHH
Confidence 567777887774 789999999999999887 566778999999 6669999999999998
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~ 193 (303)
..|-.+. +.+ ...|..+|....++|++++|.-||.+|++.. |.........+.+|. +.|++..
T Consensus 197 llAAHL~-----p~d---~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~-~~G~~~~ 259 (895)
T KOG2076|consen 197 LLAAHLN-----PKD---YELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQ-KTGDLKR 259 (895)
T ss_pred HHHHhcC-----CCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHH-HhChHHH
Confidence 8887752 222 3678899999999999999999999999864 555778889999998 9999999
Q ss_pred HHHHHHHHHHhhhhh------h---hhhhhhhhhhhhHHHHhh---hc--cccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 194 AEKLYFRSIEINDNL------K---LFSASYSGLEYHYRDLKL---FS--ASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 194 A~~~~~~al~~~~~~------~---~~~~~~~~l~~~~~a~~~---~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
|...+.+.+...|.. . .++..+.-.....+|.+. .. .........+..++.++.+...++.|....
T Consensus 260 Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i 339 (895)
T KOG2076|consen 260 AMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKI 339 (895)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHH
Confidence 999999999988821 0 112222222111222211 11 122233445778999999999999999844
No 107
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.91 E-value=2.7e-07 Score=88.18 Aligned_cols=191 Identities=12% Similarity=0.039 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.++..+...| ...|++++|...|++..+. +.+....+++.+. ..|...|++++|...|.
T Consensus 580 vTynaLI~ay----~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI----------~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 580 ITVGALMKAC----ANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAV----------NSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHH----HHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHH----------HHHHhcCCHHHHHHHHH
Confidence 4566666556 5889999999999876553 1111234555555 66678888888888888
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
+..+. .-.|+ ..+|..+...|...|++++|..++.++.+. .-.|. ..++..+...|. +.|++++|
T Consensus 639 eM~~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~------G~~pd-~~tynsLI~ay~-k~G~~eeA 703 (1060)
T PLN03218 639 DMKKK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ------GIKLG-TVSYSSLMGACS-NAKNWKKA 703 (1060)
T ss_pred HHHHc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHH-hCCCHHHH
Confidence 76652 11222 346777778888888888888888776542 11122 346777777776 78888888
Q ss_pred HHHHHHHHHh--hhhhh---hhhhhhhhhhhhHHHHhhhc----c-ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 195 EKLYFRSIEI--NDNLK---LFSASYSGLEYHYRDLKLFS----A-SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 195 ~~~~~~al~~--~~~~~---~~~~~~~~l~~~~~a~~~~~----~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..+|++.... .|+.. .+...+...+.+.+|++.+. . -.|+ ...+..+-..+.+.|++++|.+++..+
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888776542 12111 12222223344445543222 1 1233 234566667778888888888755443
No 108
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.90 E-value=3.2e-08 Score=84.12 Aligned_cols=111 Identities=15% Similarity=0.100 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
+...|... +..|+|++|+.+|.++++. +|....++.++| .++...|++++|+..++++
T Consensus 5 l~~~a~~a----~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a----------~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 5 LEDKAKEA----FVDDDFALAVDLYTQAIDL--------DPNNAELYADRA----------QANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHH
Confidence 34456566 4899999999999999987 455567888999 7779999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
+.+ .|....++.++|.++..+|++++|+..|++++.+. ++++ .+...++.+..
T Consensus 63 l~l--------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~-----P~~~---~~~~~l~~~~~ 115 (356)
T PLN03088 63 IEL--------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA-----PGDS---RFTKLIKECDE 115 (356)
T ss_pred HHh--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHH
Confidence 996 34556789999999999999999999999999875 3333 34455565554
No 109
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.90 E-value=6.3e-08 Score=68.13 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=78.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.++...|+.++|+.+|++++.. +.+.+....++..+|..+..+|++++|+..+++++.-. ++++......
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~~~~~l~ 78 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDELNAALR 78 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHH
Confidence 6668999999999999999983 44566677899999999999999999999999987643 3333355566
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
..++.++. ..|++++|+..+-.++.
T Consensus 79 ~f~Al~L~-~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALY-NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 77888996 99999999999988775
No 110
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.90 E-value=4.3e-07 Score=86.87 Aligned_cols=134 Identities=6% Similarity=-0.126 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.++..+...| .+.|++++|+..|.+..+. .-.|+ ..+++.+. ..|...|++++|.+.+.
T Consensus 508 vTynaLI~gy----~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI----------~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 508 HTFGALIDGC----ARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALI----------SACGQSGAVDRAFDVLA 566 (1060)
T ss_pred HHHHHHHHHH----HHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHH----------HHHHHCCCHHHHHHHHH
Confidence 3444454444 4666666666666554332 11121 12333333 44455555555555555
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
+...... +-.|+ ..++..+...|.+.|++++|.+.|++..+. +.+....+++.+...|. +.|++++|
T Consensus 567 eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~-k~G~~deA 633 (1060)
T PLN03218 567 EMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCS-QKGDWDFA 633 (1060)
T ss_pred HHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHH-hcCCHHHH
Confidence 5433100 00111 234445555555555555555555544331 00111233444444444 45555555
Q ss_pred HHHHHHHH
Q psy4339 195 EKLYFRSI 202 (303)
Q Consensus 195 ~~~~~~al 202 (303)
..+|++..
T Consensus 634 l~lf~eM~ 641 (1060)
T PLN03218 634 LSIYDDMK 641 (1060)
T ss_pred HHHHHHHH
Confidence 55554443
No 111
>KOG0624|consensus
Probab=98.89 E-value=3e-07 Score=74.49 Aligned_cols=200 Identities=12% Similarity=-0.016 Sum_probs=147.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhH
Q psy4339 27 GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFY 106 (303)
Q Consensus 27 ~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~ 106 (303)
...+|..+.-+..+|..+ ...|++..|+..|..|++. +|....+++..| .+|...|+-
T Consensus 31 ~~~~~advekhlElGk~l----la~~Q~sDALt~yHaAve~--------dp~~Y~aifrRa----------T~yLAmGks 88 (504)
T KOG0624|consen 31 STASPADVEKHLELGKEL----LARGQLSDALTHYHAAVEG--------DPNNYQAIFRRA----------TVYLAMGKS 88 (504)
T ss_pred hcCCHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHH----------HHHhhhcCC
Confidence 456788889999999888 5999999999999999886 677778888888 777999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH------------
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG------------ 174 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~------------ 174 (303)
.-|+.-+.+++++ .|+...+...-|.++..+|.+++|+.-|..++... +......
T Consensus 89 k~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-----~s~~~~~eaqskl~~~~e~ 155 (504)
T KOG0624|consen 89 KAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-----PSNGLVLEAQSKLALIQEH 155 (504)
T ss_pred ccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHhHHHH
Confidence 9999999999986 57788889999999999999999999999988642 1111111
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHH---hhhccccccHHHHHHhHHHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDL---KLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~---~~~~~~~~~~~~~~~~la~~~~ 247 (303)
..+......+. ..|+...|+++..+.+++.+=... -+.+|-..+...+|+ +....-..+....++.++.++.
T Consensus 156 ~~l~~ql~s~~-~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 156 WVLVQQLKSAS-GSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHHh-cCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 12233344443 679999999999999998872111 122222223333443 2222233345566889999999
Q ss_pred hhhcHHHHHH-HHHHH
Q psy4339 248 CLENFEKMTE-FTNKL 262 (303)
Q Consensus 248 ~~g~~~~A~~-~~~~~ 262 (303)
..|+.+.++. ..+-+
T Consensus 235 ~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECL 250 (504)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 9999998888 55554
No 112
>KOG0543|consensus
Probab=98.89 E-value=9e-08 Score=79.26 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=100.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCc
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENN-------VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD 170 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 170 (303)
+.|+..|+|..|..-|++|+..+....+.+. .....++.|+|.|+.++++|.+|+.++.++|.+.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-------- 287 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-------- 287 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--------
Confidence 7789999999999999999998763322221 1234678999999999999999999999999864
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhh
Q psy4339 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLE 250 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 250 (303)
|....+++..|.++. .+|+|+.|+..|++++++.| ..-.+...|..+..+..
T Consensus 288 ~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P---------------------------~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 288 PNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEP---------------------------SNKAARAELIKLKQKIR 339 (397)
T ss_pred CCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCC---------------------------CcHHHHHHHHHHHHHHH
Confidence 566789999999998 99999999999999999988 33455666777766666
Q ss_pred cHHHHHH
Q psy4339 251 NFEKMTE 257 (303)
Q Consensus 251 ~~~~A~~ 257 (303)
++.+..+
T Consensus 340 ~~~~kek 346 (397)
T KOG0543|consen 340 EYEEKEK 346 (397)
T ss_pred HHHHHHH
Confidence 6665544
No 113
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.89 E-value=3.9e-08 Score=65.26 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=64.8
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHH
Q psy4339 144 SMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYR 223 (303)
Q Consensus 144 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~ 223 (303)
.+|+|++|+.+++++++.. +..+ ....+..+|.+|. ..|++++|+.++++ ....+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~----------------- 55 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDP----------------- 55 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHH-----------------
T ss_pred CCccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCC-----------------
Confidence 3689999999999999876 2223 4556778999995 99999999999999 54444
Q ss_pred HHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 224 DLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 224 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
....+.+.+|.++..+|++++|++.++.
T Consensus 56 ----------~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 56 ----------SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp ----------CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3455677889999999999999996543
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.89 E-value=3.7e-07 Score=71.40 Aligned_cols=149 Identities=15% Similarity=0.035 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
...++..| ......|+|.+|+..|++.+..+ +.++....+...+|.++...|++++|+..+++-+
T Consensus 5 ~~~lY~~a----------~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 5 AEALYQKA----------LEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHHH----------HHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667 66689999999999999999875 4567778899999999999999999999999998
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHML-----------EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLF 228 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~ 228 (303)
+.. |++|....+++.+|.++. .+. ...+|+..++..+...|+.+....+...+..+..
T Consensus 70 ~~y-----P~~~~~~~A~Y~~g~~~~-~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~----- 138 (203)
T PF13525_consen 70 KLY-----PNSPKADYALYMLGLSYY-KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN----- 138 (203)
T ss_dssp HH------TT-TTHHHHHHHHHHHHH-HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-----
T ss_pred HHC-----CCCcchhhHHHHHHHHHH-HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH-----
Confidence 876 777888889999999874 543 3458899999999888865544444333322221
Q ss_pred ccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 229 SASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
..+.--..+|..|.+.|.+..|...+
T Consensus 139 -----~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 139 -----RLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp -----HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 23333566899999999999999844
No 115
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.88 E-value=2.6e-07 Score=86.01 Aligned_cols=198 Identities=11% Similarity=-0.125 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHH
Q psy4339 10 NLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALI 89 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 89 (303)
....-+.++++.++.+..+..+--..+....|..| ...++.++|+..|.+++.-.... ...+........|-
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday----l~~~~P~kA~~l~~~~~~~~~~~--~~~~~~~~~~~~L~-- 374 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY----IDRRLPEKAAPILSSLYYSDGKT--FRNSDDLLDADDLY-- 374 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH----HhcCCcHHHHHHHHHHhhccccc--cCCCcchHHHHHHH--
Confidence 33444666777777665333222223566666555 57888888888888775431100 00111111112222
Q ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH-h--h----CCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 90 LEEIALDSNELISVQFYKEAELLHQNALVLSLK-H--F----GENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~--~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..|...++|++|..++.+..+...- . . ...+|+.......++.++...|++.+|++.+++.+...
T Consensus 375 --------yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 375 --------YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA 446 (822)
T ss_pred --------HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7778999999999999998873220 0 1 12456777888999999999999999999999987654
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhH
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGL 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~l 242 (303)
|........+|.++. ..|.+.+|...++.+..+.| ....+...+
T Consensus 447 --------P~n~~l~~~~A~v~~-~Rg~p~~A~~~~k~a~~l~P---------------------------~~~~~~~~~ 490 (822)
T PRK14574 447 --------PANQNLRIALASIYL-ARDLPRKAEQELKAVESLAP---------------------------RSLILERAQ 490 (822)
T ss_pred --------CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCC---------------------------ccHHHHHHH
Confidence 666677889999998 99999999999988887766 455667788
Q ss_pred HHHHHhhhcHHHHHHHH
Q psy4339 243 IHVYECLENFEKMTEFT 259 (303)
Q Consensus 243 a~~~~~~g~~~~A~~~~ 259 (303)
|.++..+|++++|....
T Consensus 491 ~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 491 AETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 88888888888887744
No 116
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.88 E-value=6.1e-08 Score=78.29 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=85.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|+|++|+..|++.+..+ |+++....+++.+|.+|...|++++|+..|++++..+ ++++....++..+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~kl 223 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKV 223 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHH
Confidence 55799999999999999864 4555667789999999999999999999999999876 6778899999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|.++. .+|++++|...|+++++..|
T Consensus 224 g~~~~-~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQ-DKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHHCc
Confidence 99997 99999999999999998888
No 117
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.87 E-value=3.3e-08 Score=66.66 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=76.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..++++++.. +++ ..++..+|.++...+++++|+.++++++... |....++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~ 71 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-----PDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELD--------PDNAKAY 71 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-----Ccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CcchhHH
Confidence 66688999999999999998852 222 3678899999999999999999999998753 2233678
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+|.++. ..|++++|..++.+++...|
T Consensus 72 ~~~~~~~~-~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 72 YNLGLAYY-KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHH-HHHhHHHHHHHHHHHHccCC
Confidence 89999997 99999999999999987654
No 118
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.86 E-value=1.3e-07 Score=66.57 Aligned_cols=99 Identities=17% Similarity=0.037 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSA 213 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 213 (303)
+.+++|.++-.+|+.++|+.+|++++.. |.+.+....++..+|..+. .+|++++|+..+++++.-.|
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p------- 69 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFP------- 69 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCC-------
Confidence 5678999999999999999999999874 4555667788999999998 99999999999999987666
Q ss_pred hhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 214 SYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 214 ~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
+.+........++.++...|++++|++ +...+
T Consensus 70 -----------------~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 70 -----------------DDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred -----------------CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222244445668889999999999999 55555
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=3.9e-07 Score=84.33 Aligned_cols=220 Identities=14% Similarity=0.086 Sum_probs=146.6
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++....+|.+-.=.+.. .+.-+|....++..|...+ ...+++++|+..+..+++. +|.....++.+|
T Consensus 6 ~~~~~~~~~ee~~~r~~-~~~~~p~n~~a~~~Li~~~----~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G 72 (906)
T PRK14720 6 IDKLTSLLNEEKWTRAD-ANNYSLSKFKELDDLIDAY----KSENLTDEAKDICEEHLKE--------HKKSISALYISG 72 (906)
T ss_pred HHHHHHHhhhhhhhhcc-cccCCcchHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHh--------CCcceehHHHHH
Confidence 34444444443322222 2345677888999999766 5899999999999988776 667778888888
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh-----------CCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF-----------GENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
.++...+++.+|.-. .++.+..... -.+.+..-.++..+|.||-.+|++++|...|+
T Consensus 73 ----------~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ye 140 (906)
T PRK14720 73 ----------ILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWE 140 (906)
T ss_pred ----------HHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence 444677777776665 5554432210 01123334588899999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----------hhhHHHH
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL-----------EYHYRDL 225 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l-----------~~~~~a~ 225 (303)
+++++. |..+.+++++|..|. .. +.++|+.++.+|+...-+..++....... ..+.+-+
T Consensus 141 r~L~~D--------~~n~~aLNn~AY~~a-e~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 141 RLVKAD--------RDNPEIVKKLATSYE-EE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred HHHhcC--------cccHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 999864 667788999999998 88 99999999999998766433322222211 1111111
Q ss_pred hh-hcc-ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 226 KL-FSA-SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 226 ~~-~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+. .+. ........+.-+=..|...+++++++.+++.+
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 11 111 11134455666677888888888888865544
No 120
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.86 E-value=6.3e-07 Score=71.89 Aligned_cols=175 Identities=10% Similarity=-0.049 Sum_probs=123.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
+-++.|+..|++.++. -+..+....+...+|.++| ..++|++|+..+++.++.. +++|....+++.
T Consensus 46 g~y~~Ai~~f~~l~~~-----yP~s~~a~~a~l~la~ayy----~~~~y~~A~~~~e~fi~~~-----P~~~~~~~a~Y~ 111 (243)
T PRK10866 46 GNWKQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYY----KNADLPLAQAAIDRFIRLN-----PTHPNIDYVLYM 111 (243)
T ss_pred CCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhC-----cCCCchHHHHHH
Confidence 3444555555555443 3456777788899999885 9999999999999998873 667888889999
Q ss_pred HHHHHHHHhhhh--------HHHHhhhhHHHHHHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHHHHhhcH
Q psy4339 86 KALILEEIALDS--------NELISVQFYKEAELLHQNALVLSLKHFGEN---------NVQTAKHYGNIGRLYQSMQKF 148 (303)
Q Consensus 86 la~~~~~~~~~~--------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~~ 148 (303)
+|.+...++.+. .....+....+|+..+++.++.+.+..-.. ....+.--..+|..|.+.|.|
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 996542222100 111233445677788888877653210000 011223334688899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 149 DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 149 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
.-|+.-++.+++-+ ++.+....++..++.+|. .+|..++|......
T Consensus 192 ~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~-~lg~~~~a~~~~~~ 237 (243)
T PRK10866 192 VAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR-QLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH-HcCChHHHHHHHHH
Confidence 99999999998876 667888899999999997 99999999887643
No 121
>KOG1585|consensus
Probab=98.86 E-value=9.2e-06 Score=62.98 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=111.9
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
++.-..+..+..-+. .| +...+|++|..++.+|.+-.+.. ......+..+-..| ........+.
T Consensus 25 ad~dgaas~yekAAv-af---RnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaa----------mLake~~kls 88 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAV-AF---RNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAA----------MLAKELSKLS 88 (308)
T ss_pred CCchhhHHHHHHHHH-HH---HhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH----------HHHHHHHHhH
Confidence 444445556666664 44 79999999999999999887653 22222455565556 3347888999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
++..++++|..++.+.. .|+.+..-..-|--....-++++|+.+|++++.+.+.- .........+...++++. +
T Consensus 89 Evvdl~eKAs~lY~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lV-r 162 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLV-R 162 (308)
T ss_pred HHHHHHHHHHHHHHHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhh-h
Confidence 99999999999998753 34444333344444566788999999999999998762 222233455678899998 9
Q ss_pred hcCHHHHHHHHHHHHHhhh
Q psy4339 188 MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~ 206 (303)
..++++|-..+.+-..+..
T Consensus 163 l~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred hHHhhHHHHHHHHhhhHHH
Confidence 9999999988887666554
No 122
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.85 E-value=3.1e-08 Score=62.23 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=55.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
.+|..+...|++++|+..|+++++. .|....++..+|.++. .+|++++|+..|+++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCC
Confidence 5799999999999999999999853 4888899999999997 9999999999999999998843
No 123
>KOG1128|consensus
Probab=98.85 E-value=6.2e-08 Score=85.34 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=93.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
.+.++|.++.+.++.++++ +|....+++.+|.+..+.++++.|.++|..++.+. |+...+++|+
T Consensus 496 ~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~eaWnNl 559 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEAWNNL 559 (777)
T ss_pred ccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhhhhhh
Confidence 5678888888888888886 45566778888888888899988888888887653 6777888889
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
+.+|. ..|+-.+|...+++|++-.. .+ ..++-|.-.+..+.|.+++|++.++
T Consensus 560 s~ayi-~~~~k~ra~~~l~EAlKcn~------------------------~~---w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 560 STAYI-RLKKKKRAFRKLKEALKCNY------------------------QH---WQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHH-HHhhhHHHHHHHHHHhhcCC------------------------CC---CeeeechhhhhhhcccHHHHHHHHH
Confidence 88888 88888888888888886544 22 2346777778889999999999555
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
.+
T Consensus 612 rl 613 (777)
T KOG1128|consen 612 RL 613 (777)
T ss_pred HH
Confidence 54
No 124
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.84 E-value=4.8e-08 Score=62.17 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-cHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-KFDEAERMQLKA 158 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a 158 (303)
+.++..+| ..+...|++++|+.+|.+++++ +|....++.++|.++..+| ++++|+..++++
T Consensus 3 a~~~~~~g----------~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLG----------QIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHH----------HHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 46677788 7779999999999999999997 4556778999999999999 899999999999
Q ss_pred HHH
Q psy4339 159 IAI 161 (303)
Q Consensus 159 l~~ 161 (303)
+++
T Consensus 65 l~l 67 (69)
T PF13414_consen 65 LKL 67 (69)
T ss_dssp HHH
T ss_pred HHc
Confidence 986
No 125
>KOG2376|consensus
Probab=98.82 E-value=1.2e-06 Score=75.69 Aligned_cols=193 Identities=13% Similarity=0.010 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH
Q psy4339 14 CSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI 93 (303)
Q Consensus 14 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 93 (303)
=|++|++...++++.. |+...+...--.++ ...++|++|+...+.-... ..........|
T Consensus 27 e~e~a~k~~~Kil~~~-pdd~~a~~cKvVal----Iq~~ky~~ALk~ikk~~~~---------~~~~~~~fEKA------ 86 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIV-PDDEDAIRCKVVAL----IQLDKYEDALKLIKKNGAL---------LVINSFFFEKA------ 86 (652)
T ss_pred HHHHHHHHHHHHHhcC-CCcHhhHhhhHhhh----hhhhHHHHHHHHHHhcchh---------hhcchhhHHHH------
Confidence 3677888877777543 44444444444355 5889999888555432211 00001113344
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-----------
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK----------- 162 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------- 162 (303)
.+.++.+..++|+..+. .++ +.+ ..+...-|.+++++|+|++|+..|+..++-.
T Consensus 87 ----Yc~Yrlnk~Dealk~~~-~~~-------~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 87 ----YCEYRLNKLDEALKTLK-GLD-------RLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred ----HHHHHcccHHHHHHHHh-ccc-------ccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 66688999999998887 111 122 3345667899999999999999998763321
Q ss_pred ------------HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcc
Q psy4339 163 ------------EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSA 230 (303)
Q Consensus 163 ------------~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~ 230 (303)
.+.........-..++|.|.++. ..|+|.+|++.+++++.+.. +.+..
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i-~~gky~qA~elL~kA~~~~~-------------------e~l~~ 211 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILI-ENGKYNQAIELLEKALRICR-------------------EKLED 211 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHH-------------------Hhhcc
Confidence 01111122234567899999998 99999999999999998887 44433
Q ss_pred ccc-------cHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 231 SYS-------GLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 231 ~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
++. +...+...|+.++..+|+.++|...+..
T Consensus 212 ~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 212 EDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 221 2556788899999999999999994433
No 126
>KOG1174|consensus
Probab=98.82 E-value=7.5e-07 Score=73.89 Aligned_cols=202 Identities=11% Similarity=0.007 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH----------------HHh
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE----------------EIA 94 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----------------~~~ 94 (303)
|.....+..+|.++| ..|++++|+..|+++.-+ +|......-..|.++. .+.
T Consensus 229 r~NvhLl~~lak~~~----~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLY----YNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred CccHHHHHHHhhhhh----hhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh
Confidence 445667888998885 899999999999988755 2332222222222211 000
Q ss_pred h--------hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 95 L--------DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 95 ~--------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
. .....+..+++..|+.+.+++++. ++....++..-|..+..+|+.++|.-.|+.|..+.
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---- 364 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---- 364 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc----
Confidence 0 003446778888999999988885 34455678889999999999999999999998875
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhh------hhhhhHHHHhhhc---cccccHHH
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYS------GLEYHYRDLKLFS---ASYSGLEY 237 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------~l~~~~~a~~~~~---~~~~~~~~ 237 (303)
|....+|..|-.+|. ..|++.||....+.++...++......... .-..-.+|.+... .-.|....
T Consensus 365 ----p~rL~~Y~GL~hsYL-A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 365 ----PYRLEIYRGLFHSYL-AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred ----hhhHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 777889999999998 999999999999999998885433222111 1122234443322 23677888
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+-..+|.+....|+++.++.+++.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHH
Confidence 888999999999999999995544
No 127
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.81 E-value=7.5e-08 Score=64.86 Aligned_cols=93 Identities=25% Similarity=0.306 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSA 213 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 213 (303)
++.++|.++...|++++|+..++++++.. |....++..+|.++. ..|++++|+.++++++...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~------- 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDP------- 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCC-------
Confidence 46789999999999999999999998763 223367889999997 99999999999999998777
Q ss_pred hhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 214 SYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 214 ~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....++..+|.++...|++++|..++..+
T Consensus 66 --------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 66 --------------------DNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred --------------------cchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22256889999999999999999965443
No 128
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.79 E-value=4.7e-07 Score=84.39 Aligned_cols=85 Identities=8% Similarity=0.008 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---hhhhhhhhhhhhHHH---HhhhccccccHHHHHHhHHHHHHhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---LFSASYSGLEYHYRD---LKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~l~~~~~a---~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
.+..+..+|. +.|++++|.+.+++.- ..|+.. .+..++...+.+..| .+......|.....|..++.+|...
T Consensus 464 ~y~~li~~l~-r~G~~~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 464 HYACMIELLG-REGLLDEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred chHhHHHHHH-hcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 4666777776 7888888887776531 111100 111111112222222 2222233444445688999999999
Q ss_pred hcHHHHHHHHHHH
Q psy4339 250 ENFEKMTEFTNKL 262 (303)
Q Consensus 250 g~~~~A~~~~~~~ 262 (303)
|++++|.+.++.+
T Consensus 542 G~~~~A~~v~~~m 554 (697)
T PLN03081 542 GRQAEAAKVVETL 554 (697)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999977666
No 129
>KOG2376|consensus
Probab=98.77 E-value=1.1e-06 Score=76.05 Aligned_cols=178 Identities=19% Similarity=0.105 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHH
Q psy4339 13 LCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEE 92 (303)
Q Consensus 13 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 92 (303)
+-|+.|+++.+...+ +.......+.-+.|.| +.+..++|+..++- ..+.++ .++..-|
T Consensus 60 ~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Y----rlnk~Dealk~~~~--------~~~~~~---~ll~L~A----- 117 (652)
T KOG2376|consen 60 DKYEDALKLIKKNGA--LLVINSFFFEKAYCEY----RLNKLDEALKTLKG--------LDRLDD---KLLELRA----- 117 (652)
T ss_pred hHHHHHHHHHHhcch--hhhcchhhHHHHHHHH----HcccHHHHHHHHhc--------ccccch---HHHHHHH-----
Confidence 347778866555322 1112222267888886 89999999998871 112222 2333334
Q ss_pred HhhhhHHHHhhhhHHHHHHHHHHHHHHHH-----------------------HhhCCCcHHHHHHHHHHHHHHHHhhcHH
Q psy4339 93 IALDSNELISVQFYKEAELLHQNALVLSL-----------------------KHFGENNVQTAKHYGNIGRLYQSMQKFD 149 (303)
Q Consensus 93 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~ 149 (303)
..++++|+|++|+..|+..++-.. +.....+...-..++|.|.++...|+|.
T Consensus 118 -----QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~ 192 (652)
T KOG2376|consen 118 -----QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN 192 (652)
T ss_pred -----HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence 555899999999999998643211 1111112234567889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh-hhhhhhhhhhhh
Q psy4339 150 EAERMQLKAIAIKEKVLGKDD-------YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND-NLKLFSASYSGL 218 (303)
Q Consensus 150 ~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~l 218 (303)
+|++.+++|++++++.+..++ .+...+...++.++. .+|+..+|...|...++..+ +-|..+.+.|+|
T Consensus 193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ-~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ-LQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 999999999998877643322 234566788999998 99999999999999988766 345666666666
No 130
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.76 E-value=4.6e-07 Score=73.22 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
...+..|..++ ...|+|++|+..|++.++.+ ++++....+++.+| .+|...|++++|+..|+
T Consensus 143 ~~~Y~~A~~l~---~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG----------~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 143 NTDYNAAIALV---QDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLG----------QLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHH----------HHHHHcCCHHHHHHHHH
Confidence 45566665553 46799999999999988873 34555678899999 77799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+++..+ ++++....++..+|.++..+|++++|...|+++++.+
T Consensus 205 ~vv~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 205 SVVKNY-----PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHC-----CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999864 5678888999999999999999999999999998765
No 131
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.73 E-value=9.1e-07 Score=82.48 Aligned_cols=143 Identities=11% Similarity=0.013 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhh
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIAL 95 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 95 (303)
++|.++++.... ....+++.+...| ...|++++|+..|++..+. .-.|+ ..++..+.
T Consensus 276 ~~A~~vf~~m~~----~~~vt~n~li~~y----~~~g~~~eA~~lf~~M~~~------g~~pd-~~t~~~ll-------- 332 (697)
T PLN03081 276 EDARCVFDGMPE----KTTVAWNSMLAGY----ALHGYSEEALCLYYEMRDS------GVSID-QFTFSIMI-------- 332 (697)
T ss_pred HHHHHHHHhCCC----CChhHHHHHHHHH----HhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHH--------
Confidence 344555554322 2345777777666 6899999999999876543 11222 12344444
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 96 DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 96 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
..+...|++++|.+.+...++. ..+....+++.|...|.+.|++++|.+.|++..+ ++ ..
T Consensus 333 --~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~d-~~ 392 (697)
T PLN03081 333 --RIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------KN-LI 392 (697)
T ss_pred --HHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------CC-ee
Confidence 4456666666666666655542 1111223344555555555555555555544321 11 12
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
+|+.+...|. ..|+.++|++.|++..
T Consensus 393 t~n~lI~~y~-~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 393 SWNALIAGYG-NHGRGTKAVEMFERMI 418 (697)
T ss_pred eHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 3444555554 5555555555555543
No 132
>KOG1156|consensus
Probab=98.73 E-value=1.4e-06 Score=76.12 Aligned_cols=208 Identities=13% Similarity=0.036 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
|.+.++..+.++. ..|+.++++...|-.+ ...|+-++|..+...++.. ++....++..+|
T Consensus 23 YkkgLK~~~~iL~-k~~eHgeslAmkGL~L----~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~g------- 82 (700)
T KOG1156|consen 23 YKKGLKLIKQILK-KFPEHGESLAMKGLTL----NCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLG------- 82 (700)
T ss_pred HHhHHHHHHHHHH-hCCccchhHHhccchh----hcccchHHHHHHHHHHhcc--------CcccchhHHHHH-------
Confidence 4456777777775 5677778888888777 5899999999999988774 444456777788
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
-+++...+|++|+.+|+.|+.+ .++...++..++....++++++-....-.+-++.. |...
T Consensus 83 ---l~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~r 143 (700)
T KOG1156|consen 83 ---LLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQR 143 (700)
T ss_pred ---HHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhH
Confidence 4448999999999999999996 34556788999999999999998888877777654 6666
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---hh----hhhhhhh-----hhhHHHHhhhcccccc---HHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---LF----SASYSGL-----EYHYRDLKLFSASYSG---LEYDY 239 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~----~~~~~~l-----~~~~~a~~~~~~~~~~---~~~~~ 239 (303)
..|...|..+. ..|++..|....+.-.+.....| .+ ...+.+. +...++++.+....+. .....
T Consensus 144 a~w~~~Avs~~-L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQH-LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHh
Confidence 77889999996 99999999999888776653212 11 1111111 2234555544444333 33445
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 240 RGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..-|.++.+.|++++|...+..+
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHH
Confidence 67899999999999999966555
No 133
>KOG4234|consensus
Probab=98.72 E-value=7.4e-07 Score=66.82 Aligned_cols=97 Identities=24% Similarity=0.231 Sum_probs=85.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+-++..|+|++|..-|..|++++... ........|.|-|.+...++.++.|+.-+.+|+++. |....++
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty~kAl 171 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTYEKAL 171 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chhHHHH
Confidence 66688999999999999999987543 234556788999999999999999999999999985 6677888
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...|.+|. .+.+|++|++-|++.++..|
T Consensus 172 ~RRAeaye-k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 172 ERRAEAYE-KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHH-hhhhHHHHHHHHHHHHHhCc
Confidence 89999998 99999999999999998888
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=1.8e-06 Score=80.15 Aligned_cols=166 Identities=13% Similarity=0.016 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC-----------cchhhhHHH
Q psy4339 14 CSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP-----------ENHLLLTSA 82 (303)
Q Consensus 14 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~ 82 (303)
-+++++++++..+ ..+|.....+..+|.++ .+.+++.+|.-. .++.+...... .+.+..-.+
T Consensus 46 ~~deai~i~~~~l-~~~P~~i~~yy~~G~l~----~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~A 118 (906)
T PRK14720 46 LTDEAKDICEEHL-KEHKKSISALYISGILS----LSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLA 118 (906)
T ss_pred CHHHHHHHHHHHH-HhCCcceehHHHHHHHH----Hhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHH
Confidence 3466677666544 34688889999999755 588888888777 66665443210 011222245
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+..+| .+|...|+.++|...+++++++ +|..+.+++++|..|... +.++|+.++.+|+...
T Consensus 119 l~~LA----------~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 119 LRTLA----------EAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHH----------HHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 66667 7779999999999999999996 366778899999999999 9999999999998764
Q ss_pred HHh-------------cCCCch-------------------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 163 EKV-------------LGKDDY-------------------EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 163 ~~~-------------~~~~~~-------------------~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
-.. ...++. .....+.-+=..|. ..++|++++..++.+++..+
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~-~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK-ALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhcCC
Confidence 221 111100 01111222236676 77888999999999888877
No 135
>KOG3060|consensus
Probab=98.69 E-value=3.1e-05 Score=60.46 Aligned_cols=125 Identities=16% Similarity=0.035 Sum_probs=92.9
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..|+.+-|..++++..+.+ +.++ .+...-| ..+...|++++|+++|...++ ++|
T Consensus 64 d~~~~~lAq~C~~~L~~~f-----p~S~---RV~~lka----------m~lEa~~~~~~A~e~y~~lL~--------ddp 117 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRF-----PGSK---RVGKLKA----------MLLEATGNYKEAIEYYESLLE--------DDP 117 (289)
T ss_pred HhcchHHHHHHHHHHHHhC-----CCCh---hHHHHHH----------HHHHHhhchhhHHHHHHHHhc--------cCc
Confidence 5788888888888755442 2333 3333445 444788999999999988776 345
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
....++-.---+...+|+.-+|++.+.+-++.+ +....+|..++.+|. ..|+|++|.-|+++.+-+.|.+|
T Consensus 118 t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 118 TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcH
Confidence 555566666666777888889998888877765 444568899999997 99999999999999998888544
No 136
>KOG1127|consensus
Probab=98.68 E-value=1e-06 Score=80.34 Aligned_cols=164 Identities=13% Similarity=0.057 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
++..+.++..||. +| +...+...|..+|++|.++ ++..+.+--.++ .+|.+..+++.|
T Consensus 488 d~~~apaf~~LG~-iY---rd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a----------dtyae~~~we~a 545 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQ-IY---RDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA----------DTYAEESTWEEA 545 (1238)
T ss_pred ccchhHHHHHHHH-HH---HHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH----------HHhhccccHHHH
Confidence 3556777778884 44 4555777788888887776 233333333344 666777788887
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
......+-+... -......+...|..|...+++..|+..|+.|+.+. |....++..+|.+|. ..|
T Consensus 546 ~~I~l~~~qka~------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~gLGeAY~-~sG 610 (1238)
T KOG1127|consen 546 FEICLRAAQKAP------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWLGLGEAYP-ESG 610 (1238)
T ss_pred HHHHHHHhhhch------HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHHHHHHHHH-hcC
Confidence 777333222110 01122344557888888888888888888887653 666778888999997 899
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
++..|++.|.+|..+.| ....+.+..|.+....|+|.+|..
T Consensus 611 ry~~AlKvF~kAs~LrP---------------------------~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRP---------------------------LSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ceehHHHhhhhhHhcCc---------------------------HhHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999988887777 333445566666666666666666
No 137
>KOG0543|consensus
Probab=98.68 E-value=1.2e-06 Score=72.69 Aligned_cols=143 Identities=20% Similarity=0.205 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-------hHHHHHHHHHHHHHHhhhhHHHHhhhh
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-------LTSAHRVKALILEEIALDSNELISVQF 105 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~~~~~~~~ 105 (303)
.+.....-|+.+ ++.|+|..|...|++|+..+....+.+... ...++.|++ .++..+++
T Consensus 207 ~A~~~ke~Gn~~----fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA----------~c~lKl~~ 272 (397)
T KOG0543|consen 207 AADRKKERGNVL----FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLA----------ACYLKLKE 272 (397)
T ss_pred HHHHHHHhhhHH----HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHH----------HHHHhhhh
Confidence 455666778777 599999999999999999877443322211 345677788 67799999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
|.+|+..+.++|.+ .|....+++.-|.++..+|+|+.|+..|++++++. |..-.+...+..+-.
T Consensus 273 ~~~Ai~~c~kvLe~--------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 273 YKEAIESCNKVLEL--------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH
Confidence 99999999999996 34556789999999999999999999999999875 444455556666655
Q ss_pred HhhcCHH-HHHHHHHHHHHhhh
Q psy4339 186 YHMLEYH-KAEKLYFRSIEIND 206 (303)
Q Consensus 186 ~~~g~~~-~A~~~~~~al~~~~ 206 (303)
+..++. ...+.|...+....
T Consensus 337 -k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 -KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred -HHHHHHHHHHHHHHHHhhccc
Confidence 444443 34777777776544
No 138
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.64 E-value=2.1e-07 Score=76.53 Aligned_cols=147 Identities=16% Similarity=0.088 Sum_probs=95.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|++.+.+. .+.+ +....- .++...++++.|.+.++..-++ .+|
T Consensus 113 ~~~~~~~~AL~~l~~~----------~~lE---~~al~V----------qi~L~~~R~dlA~k~l~~~~~~-----~eD- 163 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG----------GSLE---LLALAV----------QILLKMNRPDLAEKELKNMQQI-----DED- 163 (290)
T ss_dssp CCCCHHHHHHCCCTTT----------TCHH---HHHHHH----------HHHHHTT-HHHHHHHHHHHHCC-----SCC-
T ss_pred HHcCCHHHHHHHHHcc----------Cccc---HHHHHH----------HHHHHcCCHHHHHHHHHHHHhc-----CCc-
Confidence 5789999888877642 1222 222222 6668899999999888775442 122
Q ss_pred HHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQ--KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..-+....|++....| ++.+|...|++..+ ..+.....++.+|.++. .+|+|++|...+++++...+
T Consensus 164 --~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 164 --SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp --HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-C
T ss_pred --HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhcc
Confidence 1122223334444455 58999999988532 22344567889999998 99999999999999876554
Q ss_pred hhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 207 NLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 207 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
....++.+++.+....|+..++.+ +...+
T Consensus 233 ---------------------------~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 233 ---------------------------NDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred ---------------------------CCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 445568899999999999955544 77655
No 139
>PLN03077 Protein ECB2; Provisional
Probab=98.64 E-value=7.5e-06 Score=78.28 Aligned_cols=150 Identities=7% Similarity=-0.062 Sum_probs=100.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..|...|+.++|++.|++..+. +-.|+ ..++..+-..+...|++++|..+|+...+.. +-.|. ...+
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~------g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~-~~~y 628 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVES------GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN-LKHY 628 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc------CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc-hHHH
Confidence 6678889999999988886652 11232 2346666677888999999999998876432 22343 3578
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhh------hhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASY------SGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
..+..++. +.|++++|.+.+++. .+.|+...+...+ .+++....+.+.+-+-.|.....+..++.+|...|+
T Consensus 629 ~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 629 ACVVDLLG-RAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 89999998 999999999999874 2333211111111 122222233333333445556668899999999999
Q ss_pred HHHHHHHHHHH
Q psy4339 252 FEKMTEFTNKL 262 (303)
Q Consensus 252 ~~~A~~~~~~~ 262 (303)
+++|.+..+.+
T Consensus 707 ~~~a~~vr~~M 717 (857)
T PLN03077 707 WDEVARVRKTM 717 (857)
T ss_pred hHHHHHHHHHH
Confidence 99999987666
No 140
>KOG3785|consensus
Probab=98.63 E-value=2.6e-06 Score=69.47 Aligned_cols=216 Identities=12% Similarity=0.049 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
|.-|+.+.+-....+..+....-..+|.|+ +..|+|++|+..|.-+... .+.| +....++|
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~----fhLgdY~~Al~~Y~~~~~~------~~~~--~el~vnLA------- 98 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCY----FHLGDYEEALNVYTFLMNK------DDAP--AELGVNLA------- 98 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHH----HhhccHHHHHHHHHHHhcc------CCCC--cccchhHH-------
Confidence 444555554333444445556777889888 5999999999999876552 1222 34556778
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHH----------HHHhhC--------CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVL----------SLKHFG--------ENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~----------~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
.++...|.|.+|.....+|-+. ..+... .+-.+...-...||.+.+..-.|++|++.|+
T Consensus 99 ---cc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 99 ---CCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred ---HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6668899999998877664321 111100 0001122334567888888888888888888
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhh--------------
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGL-------------- 218 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l-------------- 218 (303)
+++. ++|+....-.++|.+|. ++.-|+-+.+.+.--+...|+.+- .+--..++
T Consensus 176 rvL~--------dn~ey~alNVy~ALCyy-KlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 176 RVLQ--------DNPEYIALNVYMALCYY-KLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHh--------cChhhhhhHHHHHHHHH-hcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 8764 45777777788999994 998888888777766665553220 00000011
Q ss_pred ----------hhh-----------HHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 219 ----------EYH-----------YRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 219 ----------~~~-----------~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+.+ .-|++.+..-....+++..+|...|..+|+..+|..+.+.
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh
Confidence 000 0122333222223567788888888999999998875544
No 141
>KOG1585|consensus
Probab=98.63 E-value=2.6e-05 Score=60.57 Aligned_cols=174 Identities=20% Similarity=0.126 Sum_probs=121.9
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH-HHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS-AHRVK 86 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l 86 (303)
++.|...+.+|.+-++.. ....+.+.++...|... .....+.++..+|++|..++.+. ..|+.+. ++-.-
T Consensus 47 feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLa----ke~~klsEvvdl~eKAs~lY~E~---GspdtAAmaleKA 117 (308)
T KOG1585|consen 47 FEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLA----KELSKLSEVVDLYEKASELYVEC---GSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHh---CCcchHHHHHHHH
Confidence 455666666676666542 23335667777777555 68899999999999999998875 3344332 33333
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| -....-+.++|+..|++++.+.++. .....-...+...+.++...++|++|-..+.+-..+..+.
T Consensus 118 a-----------k~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~- 183 (308)
T KOG1585|consen 118 A-----------KALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC- 183 (308)
T ss_pred H-----------HHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH-
Confidence 3 2256778999999999999998752 2222344667889999999999999999998877666554
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...+.....+...-.+|. ...+|..|..+++...++-.
T Consensus 184 -~~y~~~~k~~va~ilv~L-~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 184 -DAYNSQCKAYVAAILVYL-YAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred -hhcccHHHHHHHHHHHHh-hHHHHHHHHHHhcchhcCcc
Confidence 222334444555556666 67899999999999876643
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.62 E-value=2.6e-07 Score=57.99 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=50.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..+...|++++|+..|+++++. +|....++..+|.++..+|++++|+.+|++++++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6679999999999999999984 57788899999999999999999999999999864
No 143
>KOG1586|consensus
Probab=98.60 E-value=1.9e-05 Score=60.81 Aligned_cols=138 Identities=18% Similarity=0.148 Sum_probs=96.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+.|...++++.|=..|.++-+...+. .+..+.+.+|...+.||.+- ++++|+.+++++++|+... +.-...+.-+
T Consensus 42 n~yklaK~w~~AG~aflkaA~~h~k~--~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~--Grf~~aAk~~ 116 (288)
T KOG1586|consen 42 NMYKLAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM--GRFTMAAKHH 116 (288)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh--hHHHHHHhhh
Confidence 33355667777777888888877664 23345677888888887665 9999999999999998664 2223345567
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc-cccHHHHHHhHHHHHHhhhcHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS-YSGLEYDYRGLIHVYECLENFEKMT 256 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~ 256 (303)
..+|.+|.-.+.++++|+.+|+++-+... ++. ......++...|..-...++|.+|+
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk----------------------~ees~ssANKC~lKvA~yaa~leqY~~Ai 174 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYK----------------------GEESVSSANKCLLKVAQYAAQLEQYSKAI 174 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHc----------------------chhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999997334899999999999988776 222 1123345666677777777788887
Q ss_pred HHHHHH
Q psy4339 257 EFTNKL 262 (303)
Q Consensus 257 ~~~~~~ 262 (303)
..++.+
T Consensus 175 ~iyeqv 180 (288)
T KOG1586|consen 175 DIYEQV 180 (288)
T ss_pred HHHHHH
Confidence 744433
No 144
>KOG4162|consensus
Probab=98.59 E-value=2.2e-06 Score=76.33 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=107.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...++-++|..++.++-.+ .|..+..++..| ..+...|++++|.+.|..|+.+ +
T Consensus 661 ~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G----------~~~~~~~~~~EA~~af~~Al~l--------d 714 (799)
T KOG4162|consen 661 LLSGNDDEARSCLLEASKI--------DPLSASVYYLRG----------LLLEVKGQLEEAKEAFLVALAL--------D 714 (799)
T ss_pred HhcCCchHHHHHHHHHHhc--------chhhHHHHHHhh----------HHHHHHHhhHHHHHHHHHHHhc--------C
Confidence 5778888999899988776 467788899999 6668999999999999999996 3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHH--HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAER--MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|+...+...+|.++...|+..-|.. ++..++++. |....+|+.+|.++. .+|+.++|.++|.-|+++.+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--------p~n~eaW~~LG~v~k-~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--------PLNHEAWYYLGEVFK-KLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHH-HccchHHHHHHHHHHHhhcc
Confidence 4445567789999999999888888 999998864 556678999999998 99999999999999999888
Q ss_pred hhh
Q psy4339 207 NLK 209 (303)
Q Consensus 207 ~~~ 209 (303)
.+|
T Consensus 786 S~P 788 (799)
T KOG4162|consen 786 SNP 788 (799)
T ss_pred CCC
Confidence 444
No 145
>KOG3060|consensus
Probab=98.58 E-value=9.2e-06 Score=63.34 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=92.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCC
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGEN 127 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 127 (303)
...|++++|+++|...++- +|. .+.--..++. ...+|+--+|++-+.+-++.+
T Consensus 97 Ea~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAi-----------lka~GK~l~aIk~ln~YL~~F------- 150 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAI-----------LKAQGKNLEAIKELNEYLDKF------- 150 (289)
T ss_pred HHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHH-----------HHHcCCcHHHHHHHHHHHHHh-------
Confidence 6788999999988876543 233 2222233332 257888889999988888865
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML---EYHKAEKLYFRSIEI 204 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g---~~~~A~~~~~~al~~ 204 (303)
+....++..++.+|...|+|++|.-|+++.+-+. |.....+..+|.++ |-+| ++.-|.++|.+++++
T Consensus 151 -~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~--------P~n~l~f~rlae~~-Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 151 -MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ--------PFNPLYFQRLAEVL-YTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHh
Confidence 3345689999999999999999999999988653 55556677888888 4666 577899999999999
Q ss_pred hh
Q psy4339 205 ND 206 (303)
Q Consensus 205 ~~ 206 (303)
.+
T Consensus 221 ~~ 222 (289)
T KOG3060|consen 221 NP 222 (289)
T ss_pred Ch
Confidence 88
No 146
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=6.6e-07 Score=70.79 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=88.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.-+...|+|..|..-|..-++-+ ++++....+++.||.+++.+|++++|...|..+++-+ +++|....++
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~KApdal 218 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPKAPDAL 218 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCCChHHH
Confidence 55588999999999999988854 5677788999999999999999999999999998765 6778888999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+|.+.. .+|+.++|...|+++++-.|
T Consensus 219 lKlg~~~~-~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 219 LKLGVSLG-RLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHCC
Confidence 99999997 99999999999999999888
No 147
>KOG1128|consensus
Probab=98.57 E-value=1.3e-06 Score=77.35 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=98.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..|...|++-.=-.+|++|+++.... .+.+...+|......++|+++.++++.++++. |....+|
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--------plq~~~w 522 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN--------PLQLGTW 522 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC--------ccchhHH
Confidence 45566677777777777888775432 23355667777777899999999999998874 6677889
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+++|.+.. ..+++..|..+|..++...| +...+++|++..|...|+..+|..
T Consensus 523 f~~G~~AL-qlek~q~av~aF~rcvtL~P---------------------------d~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 523 FGLGCAAL-QLEKEQAAVKAFHRCVTLEP---------------------------DNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred HhccHHHH-HHhhhHHHHHHHHHHhhcCC---------------------------CchhhhhhhhHHHHHHhhhHHHHH
Confidence 99999998 99999999999999998877 677889999999999999999999
Q ss_pred -HHHHH
Q psy4339 258 -FTNKL 262 (303)
Q Consensus 258 -~~~~~ 262 (303)
+.+++
T Consensus 575 ~l~EAl 580 (777)
T KOG1128|consen 575 KLKEAL 580 (777)
T ss_pred HHHHHh
Confidence 44444
No 148
>KOG1156|consensus
Probab=98.57 E-value=3.8e-06 Score=73.45 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=99.2
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++|...++..+..++.. ++|+ .++...| -.+...|+-++|..+.+.++.. ++
T Consensus 19 E~kQYkkgLK~~~~iL~k~-----~eHg---eslAmkG----------L~L~~lg~~~ea~~~vr~glr~--------d~ 72 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF-----PEHG---ESLAMKG----------LTLNCLGKKEEAYELVRLGLRN--------DL 72 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC-----Cccc---hhHHhcc----------chhhcccchHHHHHHHHHHhcc--------Cc
Confidence 7899999999988877731 3343 5555667 4447889999999999998883 44
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....+|.-+|.++...++|++|+++|+.|+.+. |+...++..++.+.. .+++++-....-.+-++..+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--------~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--------KDNLQILRDLSLLQI-QMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhh
Confidence 556688999999999999999999999999864 556778999999998 99999998888888887777
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.57 E-value=3.2e-06 Score=75.07 Aligned_cols=131 Identities=16% Similarity=0.059 Sum_probs=94.2
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHH--hhhhHHHHHHHHHHHHHHHHHhhCCC
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELI--SVQFYKEAELLHQNALVLSLKHFGEN 127 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~ 127 (303)
..+++..|+.+|++|+++ +|+.+.++..++.++.... .+. ..++...+.+..++++.+ +.
T Consensus 354 ~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~----~~~~~~~~~l~~a~~~~~~a~al------~~ 415 (517)
T PRK10153 354 DAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRH----SQQPLDEKQLAALSTELDNIVAL------PE 415 (517)
T ss_pred CHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHH----hcCCccHHHHHHHHHHHHHhhhc------cc
Confidence 345588999999999998 6777777777775542110 000 012344455555554443 11
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.+....++.-+|......|++++|...+++|+++. |. ..++..+|.++. ..|++++|++.|++|+.+.|.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~-~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYE-LKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC
Confidence 22334677788999999999999999999999874 43 568999999998 999999999999999999983
Q ss_pred h
Q psy4339 208 L 208 (303)
Q Consensus 208 ~ 208 (303)
+
T Consensus 486 ~ 486 (517)
T PRK10153 486 E 486 (517)
T ss_pred C
Confidence 3
No 150
>KOG1586|consensus
Probab=98.57 E-value=2e-05 Score=60.72 Aligned_cols=156 Identities=15% Similarity=0.043 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
.+.++.+..-|+.| ....+|..|=..|.++-+...+.. ...+.+.+|...+ .+| +.++..+|+
T Consensus 31 eeAadl~~~Aan~y----klaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~----------~cy-kk~~~~eAv 93 (288)
T KOG1586|consen 31 EEAAELYERAANMY----KLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAA----------NCY-KKVDPEEAV 93 (288)
T ss_pred HHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHH----------HHh-hccChHHHH
Confidence 34566777777655 678888889888988888876652 3334566666666 444 455999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHhh
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-QKFDEAERMQLKAIAIKEKVLGKDD-YEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 188 (303)
.+++++++++... +....-+..+..+|.+|..- .++++|+.+|++|-+.+.. ... ...-.++...|..-. ..
T Consensus 94 ~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~yaa-~l 167 (288)
T KOG1586|consen 94 NCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYAA-QL 167 (288)
T ss_pred HHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHHH-HH
Confidence 9999999998765 22333455677899999775 9999999999999887743 111 122234555666665 78
Q ss_pred cCHHHHHHHHHHHHHhhhhhh
Q psy4339 189 LEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~ 209 (303)
|+|.+|+..|++......+++
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHhccch
Confidence 999999999999877665444
No 151
>KOG4340|consensus
Probab=98.53 E-value=5.8e-06 Score=65.99 Aligned_cols=177 Identities=13% Similarity=0.034 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH
Q psy4339 14 CSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI 93 (303)
Q Consensus 14 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 93 (303)
-|..++++.... ++.+|.....+..||.||| ...+|..|-++|++.-.. .|....-...-+
T Consensus 25 ry~DaI~~l~s~-~Er~p~~rAgLSlLgyCYY----~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~A------ 85 (459)
T KOG4340|consen 25 RYADAIQLLGSE-LERSPRSRAGLSLLGYCYY----RLQEFALAAECYEQLGQL--------HPELEQYRLYQA------ 85 (459)
T ss_pred hHHHHHHHHHHH-HhcCccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHH------
Confidence 456666665543 3556767778889998886 778899999999885444 455444333334
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
...+..+.+.+|+.......+ ++.....+...-+-+....+++..+..+.+ +..| ...
T Consensus 86 ----QSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLve-------Qlp~---en~ 143 (459)
T KOG4340|consen 86 ----QSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVE-------QLPS---ENE 143 (459)
T ss_pred ----HHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHH-------hccC---CCc
Confidence 444566677776665443222 112222333334444455555554443332 2222 123
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHH
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFE 253 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (303)
+....+.|.+. |+.|++++|..-|+.|++... ..|. .-+++|.++...|+++
T Consensus 144 Ad~~in~gCll-ykegqyEaAvqkFqaAlqvsG------------------------yqpl---lAYniALaHy~~~qya 195 (459)
T KOG4340|consen 144 ADGQINLGCLL-YKEGQYEAAVQKFQAALQVSG------------------------YQPL---LAYNLALAHYSSRQYA 195 (459)
T ss_pred cchhccchhee-eccccHHHHHHHHHHHHhhcC------------------------CCch---hHHHHHHHHHhhhhHH
Confidence 45667788877 488888888888888876554 2222 3567888888888888
Q ss_pred HHHHHH
Q psy4339 254 KMTEFT 259 (303)
Q Consensus 254 ~A~~~~ 259 (303)
.|+++.
T Consensus 196 sALk~i 201 (459)
T KOG4340|consen 196 SALKHI 201 (459)
T ss_pred HHHHHH
Confidence 888754
No 152
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=2.6e-06 Score=72.20 Aligned_cols=93 Identities=18% Similarity=0.040 Sum_probs=75.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..++..|++++|+..++..+. +.|.........+.++...|+.++|.+.+++++... |......
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------P~~~~l~ 377 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--------PNSPLLQ 377 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCccHHH
Confidence 455778888888888887554 244455566788999999999999999999999864 4446678
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.++|.++. ..|++.+|+..++..+.-.++
T Consensus 378 ~~~a~all-~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 378 LNLAQALL-KGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHHH-hcCChHHHHHHHHHHhhcCCC
Confidence 89999998 999999999999998876663
No 153
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.50 E-value=3.1e-05 Score=68.58 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF 252 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (303)
...+++.+|..|. ..|++++|+++.++|+...| ..+..+..-|.++...|++
T Consensus 193 ~lw~~~~lAqhyd-~~g~~~~Al~~Id~aI~htP---------------------------t~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 193 LLWTLYFLAQHYD-YLGDYEKALEYIDKAIEHTP---------------------------TLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCC---------------------------CcHHHHHHHHHHHHHCCCH
Confidence 3567899999998 89999999999999999888 3344455556666666666
Q ss_pred HHHHHHH
Q psy4339 253 EKMTEFT 259 (303)
Q Consensus 253 ~~A~~~~ 259 (303)
.+|.++.
T Consensus 245 ~~Aa~~~ 251 (517)
T PF12569_consen 245 KEAAEAM 251 (517)
T ss_pred HHHHHHH
Confidence 6655543
No 154
>KOG4555|consensus
Probab=98.49 E-value=2.7e-05 Score=54.41 Aligned_cols=96 Identities=18% Similarity=0.107 Sum_probs=82.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
......|+.+.|++.|.+++.+. |..+.+|+|-+..+.-+|+.++|++-+.+|+++. |+.......++
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa~ 118 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQAF 118 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHHH
Confidence 34478899999999999999974 4567889999999999999999999999999985 44445566788
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...|.+|+ .+|+-+.|..-|+.+-++..
T Consensus 119 vQRg~lyR-l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 119 VQRGLLYR-LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHH-HhCchHHHHHhHHHHHHhCC
Confidence 99999999 99999999999999877654
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.49 E-value=7.2e-07 Score=75.71 Aligned_cols=72 Identities=18% Similarity=0.048 Sum_probs=63.8
Q ss_pred CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 127 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
..|.....++|+|..|..+|+|++|+..|++|+++. ++++....+++|+|.+|. .+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 356788899999999999999999999999999985 444444467999999998 999999999999999997
No 156
>PLN03077 Protein ECB2; Provisional
Probab=98.48 E-value=1.4e-05 Score=76.35 Aligned_cols=62 Identities=6% Similarity=-0.074 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
.+|+.+...|...|+.++|+++|++..+. +-.|+. .++..+-..+. +.|++++|..+|+...
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T~~~ll~a~~-~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDE-VTFISLLCACS-RSGMVTQGLEYFHSME 616 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCc-ccHHHHHHHHh-hcChHHHHHHHHHHHH
Confidence 35566666666666666666666665432 111222 22334444554 5666666666666655
No 157
>KOG0495|consensus
Probab=98.48 E-value=3.1e-05 Score=68.14 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=69.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
....+++.|...|.++.... .....+..-+.+...+++.++|+.+++++++.+ |.....+..+
T Consensus 629 ~en~e~eraR~llakar~~s---------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lml 691 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSIS---------GTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLML 691 (913)
T ss_pred hccccHHHHHHHHHHHhccC---------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHH
Confidence 34445555555555544420 112334444555555666666666666666554 4444555666
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
|.++. .+++.+.|.+.|...++..| .....+..|+.+-.+.|....|...+.
T Consensus 692 GQi~e-~~~~ie~aR~aY~~G~k~cP---------------------------~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 692 GQIEE-QMENIEMAREAYLQGTKKCP---------------------------NSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHH-HHHHHHHHHHHHHhccccCC---------------------------CCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 66665 66666666666666655555 445557788888888998888888554
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
..
T Consensus 744 ra 745 (913)
T KOG0495|consen 744 RA 745 (913)
T ss_pred HH
Confidence 43
No 158
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=1.3e-05 Score=68.21 Aligned_cols=137 Identities=18% Similarity=0.054 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|....+.+..+..+| ..|++++|+..++..+.. .|+........+ .++...++..+|.
T Consensus 303 ~~~~aa~YG~A~~~~----~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~----------~i~~~~nk~~~A~ 360 (484)
T COG4783 303 RGGLAAQYGRALQTY----LAGQYDEALKLLQPLIAA--------QPDNPYYLELAG----------DILLEANKAKEAI 360 (484)
T ss_pred ccchHHHHHHHHHHH----HhcccchHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCChHHHH
Confidence 344556777776664 889999999999885443 344445555556 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
+.+++++... |.......++|..+...|++.+|+..++..+. +.|+....|..||.+|. .+|+
T Consensus 361 e~~~kal~l~--------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~-~~g~ 423 (484)
T COG4783 361 ERLKKALALD--------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYA-ELGN 423 (484)
T ss_pred HHHHHHHhcC--------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHH-HhCc
Confidence 9999999962 33345567999999999999999999988764 33666778999999998 9999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4339 191 YHKAEKLYFRSIEIND 206 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~ 206 (303)
..+|...+-+......
T Consensus 424 ~~~a~~A~AE~~~~~G 439 (484)
T COG4783 424 RAEALLARAEGYALAG 439 (484)
T ss_pred hHHHHHHHHHHHHhCC
Confidence 9888877766665443
No 159
>KOG0495|consensus
Probab=98.45 E-value=2.3e-05 Score=69.00 Aligned_cols=122 Identities=17% Similarity=-0.002 Sum_probs=87.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..-..+++.++|++.++++++. .|.....+..+|.++.++++.+.|...|...++.+ |...-.+
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--------P~~ipLW 722 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--------PNSIPLW 722 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--------CCCchHH
Confidence 3346677778888888777775 34556678888888888888888888888777654 4444566
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
..++.+-. ..|..-.|...++++.--.| .....+...-.+-...|+.+.|..
T Consensus 723 llLakleE-k~~~~~rAR~ildrarlkNP---------------------------k~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 723 LLLAKLEE-KDGQLVRARSILDRARLKNP---------------------------KNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHH-HhcchhhHHHHHHHHHhcCC---------------------------CcchhHHHHHHHHHHcCCHHHHHH
Confidence 77888876 88888888888888765544 334446666666677888888888
Q ss_pred -HHHHHH
Q psy4339 258 -FTNKLS 263 (303)
Q Consensus 258 -~~~~~~ 263 (303)
.-+++.
T Consensus 775 lmakALQ 781 (913)
T KOG0495|consen 775 LMAKALQ 781 (913)
T ss_pred HHHHHHH
Confidence 445553
No 160
>PRK15331 chaperone protein SicA; Provisional
Probab=98.45 E-value=4.1e-06 Score=61.46 Aligned_cols=101 Identities=16% Similarity=0.012 Sum_probs=80.2
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+++..+..+..|.-+| .+|++++|...|+-..-. +|........|| .++..+++|++|
T Consensus 33 s~~~le~iY~~Ay~~y----~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLa----------a~~Q~~k~y~~A 90 (165)
T PRK15331 33 PQDMMDGLYAHAYEFY----NQGRLDEAETFFRFLCIY--------DFYNPDYTMGLA----------AVCQLKKQFQKA 90 (165)
T ss_pred CHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHH----------HHHHHHHHHHHH
Confidence 4567888888998775 999999999999865443 233334456677 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+..|-.|..+.. ++|. ..+..|.||..+|+.++|..+|+.++.
T Consensus 91 i~~Y~~A~~l~~-----~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 91 CDLYAVAFTLLK-----NDYR---PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHccc-----CCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999988642 3333 356899999999999999999999987
No 161
>KOG4555|consensus
Probab=98.45 E-value=7.1e-06 Score=57.25 Aligned_cols=110 Identities=10% Similarity=-0.014 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSA 213 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 213 (303)
.+-.-|.....-|+.+.|++.|.+++.+. |..+.+|+|.+..++ -+|+.++|.+-+++++++..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag------- 108 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALR-LQGDDEEALDDLNKALELAG------- 108 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcC-------
Confidence 34456777888899999999999999987 777889999999999 99999999999999998876
Q ss_pred hhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHHHHHhhhhcC
Q psy4339 214 SYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWKILRETNELN 275 (303)
Q Consensus 214 ~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~ 275 (303)
........++...|.+|..+|+-+.|.. +..+...-.....+++-.
T Consensus 109 ----------------~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~ 155 (175)
T KOG4555|consen 109 ----------------DQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVE 155 (175)
T ss_pred ----------------ccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHh
Confidence 2233566788999999999999999999 666654443333344433
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.44 E-value=4.5e-06 Score=74.16 Aligned_cols=126 Identities=16% Similarity=0.079 Sum_probs=86.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhc----ccHHHHHHHHHHHHHHHHhhCCcchhhh
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSS----GRFTESRRHAEKAIQTFKNLLPENHLLL 79 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (303)
+...+..|..+|++|+++ +|+.+.++..++.++.+.+... ++...+.....+++.+ +..+..
T Consensus 354 ~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al------~~~~~~ 419 (517)
T PRK10153 354 DAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL------PELNVL 419 (517)
T ss_pred CHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc------ccCcCC
Confidence 344567788888888877 6778888888886664211111 1222333333333322 112333
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
..++..+| ......|++++|...+++|+++. |. ..+|..+|.++...|++++|++.+++|+
T Consensus 420 ~~~~~ala----------~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 420 PRIYEILA----------VQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666 44467899999999999999962 32 5689999999999999999999999999
Q ss_pred HHH
Q psy4339 160 AIK 162 (303)
Q Consensus 160 ~~~ 162 (303)
.+.
T Consensus 481 ~L~ 483 (517)
T PRK10153 481 NLR 483 (517)
T ss_pred hcC
Confidence 874
No 163
>KOG1127|consensus
Probab=98.43 E-value=2.1e-05 Score=72.15 Aligned_cols=173 Identities=14% Similarity=0.005 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
++..+.+...++..+ ....+++.|......+-+....- .....+-..| -.|...+++..|
T Consensus 522 Datdaeaaaa~adty----ae~~~we~a~~I~l~~~qka~a~------~~k~nW~~rG----------~yyLea~n~h~a 581 (1238)
T KOG1127|consen 522 DATDAEAAAASADTY----AEESTWEEAFEICLRAAQKAPAF------ACKENWVQRG----------PYYLEAHNLHGA 581 (1238)
T ss_pred CchhhhhHHHHHHHh----hccccHHHHHHHHHHHhhhchHH------HHHhhhhhcc----------ccccCccchhhH
Confidence 566777888888766 68899999988844333221110 0111122255 566899999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
+..|+.++++ +|...+++..+|..|...|++.-|++.|.+|..+. |....+.+..|.+.. ..|
T Consensus 582 V~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A~~ec-d~G 644 (1238)
T KOG1127|consen 582 VCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEAVMEC-DNG 644 (1238)
T ss_pred HHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHHHHHH-Hhh
Confidence 9999999995 56778899999999999999999999999998764 666777888899998 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+|.+|...+...+.... .......+.+.++...+..+..+|=..+|..+.
T Consensus 645 kYkeald~l~~ii~~~s--------------------~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFS--------------------LERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred hHHHHHHHHHHHHHHHH--------------------HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999887665 111222246666777777777777777777643
No 164
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.43 E-value=5.6e-07 Score=50.86 Aligned_cols=41 Identities=27% Similarity=0.530 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
+.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56789999999999999999999999999999999999884
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=98.41 E-value=3.6e-06 Score=61.72 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
++.....+..| .-+..+|++++|...|+-.... ++.....+..||.|+..+++|++|+..|.
T Consensus 34 ~~~le~iY~~A----------y~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 34 QDMMDGLYAHA----------YEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred HHHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666 6668999999999999875553 23334567899999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.|..+. .++| ...+..|.+|. .+|+.+.|..+|..++..
T Consensus 96 ~A~~l~-----~~dp---~p~f~agqC~l-~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 96 VAFTLL-----KNDY---RPVFFTGQCQL-LMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHcc-----cCCC---CccchHHHHHH-HhCCHHHHHHHHHHHHhC
Confidence 988765 2333 23678999998 999999999999998873
No 166
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.40 E-value=9e-06 Score=64.47 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
.++.|.-+| ..|+|.+|...|..-++.+ ++++....+++.|| .+++.+|+|+.|...|..+
T Consensus 144 ~Y~~A~~~~----ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLG----------e~~y~qg~y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDLY----KSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLG----------ESLYAQGDYEDAAYIFARV 204 (262)
T ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHH----------HHHHhcccchHHHHHHHHH
Confidence 677776674 8999999999999877763 56777899999999 7779999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.+-+ +++|....++..||.+...+|+.++|...|+++++-+
T Consensus 205 ~k~~-----P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 205 VKDY-----PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHhC-----CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 9854 5677788899999999999999999999999998765
No 167
>KOG3081|consensus
Probab=98.40 E-value=0.00017 Score=56.82 Aligned_cols=145 Identities=16% Similarity=0.114 Sum_probs=99.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|++.......+ +. .+++. .++.+..+++-|....++..++-++
T Consensus 119 ~~~~~~deAl~~~~~~~~l----------E~-~Al~V------------qI~lk~~r~d~A~~~lk~mq~ided------ 169 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGENL----------EA-AALNV------------QILLKMHRFDLAEKELKKMQQIDED------ 169 (299)
T ss_pred hcCCChHHHHHHHhccchH----------HH-HHHHH------------HHHHHHHHHHHHHHHHHHHHccchH------
Confidence 6899999999888763222 11 11111 4457788899999888888876322
Q ss_pred HHHHHHHHHHHHHHHHh----hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 129 VQTAKHYGNIGRLYQSM----QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.++..||..+... +++.+|.-+|++.-+ + .+.+...++..+.++. .+|+|++|...++.++.-
T Consensus 170 ----~tLtQLA~awv~la~ggek~qdAfyifeE~s~-------k-~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 170 ----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-------K-TPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDK 236 (299)
T ss_pred ----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------c-cCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhc
Confidence 2344555555442 456667766665432 2 2445667889999998 999999999999999976
Q ss_pred hhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 205 NDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.. ..+..+.|+-.+-...|.-.++.+ +...+
T Consensus 237 d~---------------------------~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 237 DA---------------------------KDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred cC---------------------------CCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 55 334557788888888899888887 66555
No 168
>PRK11906 transcriptional regulator; Provisional
Probab=98.38 E-value=1.7e-05 Score=67.69 Aligned_cols=132 Identities=11% Similarity=-0.049 Sum_probs=102.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH
Q psy4339 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT 131 (303)
Q Consensus 52 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 131 (303)
...+.|+.+|.+|+.. .+.+|..+.++..+|+++......... .......+|.+..++|+++ ++..
T Consensus 272 ~~~~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~-~~~~~~~~a~~~A~rAvel--------d~~D 337 (458)
T PRK11906 272 ESIYRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKS-ELELAAQKALELLDYVSDI--------TTVD 337 (458)
T ss_pred HHHHHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHhc--------CCCC
Confidence 3456788888888733 133788889999999776432211100 1244566778888888885 3455
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.++..+|.+....++++.|...|++|+.+. |+.+.+++..|.+.. ..|+.++|.+.+++++.+.|
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCc
Confidence 6788899999999999999999999999874 788899999999996 89999999999999999988
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=1.3e-06 Score=55.33 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 143 QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 143 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
...|++++|+..|++++... |....+...+|.+|. ..|++++|...+++++...++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcC
Confidence 57899999999999999864 556677889999997 999999999999999988773
No 170
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=1.7e-05 Score=67.59 Aligned_cols=114 Identities=18% Similarity=0.073 Sum_probs=92.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...++++.|+..+++..+. +|. +...++ .++...++-.+|++.+.+++.. .
T Consensus 180 ~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA----------~v~l~~~~E~~AI~ll~~aL~~--------~ 230 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRER--------DPE---VAVLLA----------RVYLLMNEEVEAIRLLNEALKE--------N 230 (395)
T ss_pred hhcccHHHHHHHHHHHHhc--------CCc---HHHHHH----------HHHHhcCcHHHHHHHHHHHHHh--------C
Confidence 5678999999988875443 344 233456 5557778889999999999953 3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
|.....+...|.++...++++.|+++.++++.+. |....+|..||.+|. ..|++++|+..++.
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi-~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYI-QLGDFENALLALNS 293 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHH-hcCCHHHHHHHHhc
Confidence 4447778889999999999999999999999875 777889999999999 99999999977764
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=98.36 E-value=2.1e-05 Score=67.11 Aligned_cols=154 Identities=10% Similarity=-0.077 Sum_probs=108.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhh-----hcccHHHHHHHHHHHHHHHHhhCCcchhhhH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEY-----SSGRFTESRRHAEKAIQTFKNLLPENHLLLT 80 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (303)
...+.|..+|.+|+.. .+-+|..+.++..+++|+.+... ...+..+|..+.++|+++ ++.-+
T Consensus 272 ~~~~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da 338 (458)
T PRK11906 272 ESIYRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDG 338 (458)
T ss_pred HHHHHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCH
Confidence 3455566666666632 23478889999999988863211 123345666677777666 34445
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.++..+| .+....++++.|...|++|+.+ +|..+.++...|.+....|+.++|.+.+++|++
T Consensus 339 ~a~~~~g----------~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 339 KILAIMG----------LITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHH----------HHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777888 4447788899999999999996 577788999999999999999999999999998
Q ss_pred HHHHhcCCCchHH-HHHHHHHHH-HHHHhhcCHHHHHHHHHH
Q psy4339 161 IKEKVLGKDDYEV-GLSVGHLAS-LYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~la~-~~~~~~g~~~~A~~~~~~ 200 (303)
+. |.. ......+-. .| --...++|+.+|-+
T Consensus 401 Ls--------P~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 432 (458)
T PRK11906 401 LE--------PRRRKAVVIKECVDMY--VPNPLKNNIKLYYK 432 (458)
T ss_pred cC--------chhhHHHHHHHHHHHH--cCCchhhhHHHHhh
Confidence 74 332 222333333 55 35668888888755
No 172
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.34 E-value=1.7e-05 Score=56.96 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=83.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
......|+|++|++.++.....+ +..+....+...+|.+|...+++++|+..+++-+++. +.||.+..++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~hp~vdYa~ 87 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PTHPNVDYAY 87 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCCCccHHH
Confidence 55588999999999998877753 3445566788999999999999999999999999875 8889999999
Q ss_pred HHHHHHHHHhhcC---------------HHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLE---------------YHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~---------------~~~A~~~~~~al~~~~ 206 (303)
+..|.++. .+.. ..+|...|++.+...|
T Consensus 88 Y~~gL~~~-~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 88 YMRGLSYY-EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHH-HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 99999995 8776 7788888888888887
No 173
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.33 E-value=0.00042 Score=54.68 Aligned_cols=175 Identities=13% Similarity=-0.037 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+..+++-|... ...|+|++|...|+..... . +..|....+...++ .++.+.+++++|+...
T Consensus 34 ~~~LY~~g~~~----L~~gn~~~A~~~fe~l~~~---~--p~s~~~~qa~l~l~----------yA~Yk~~~y~~A~~~~ 94 (254)
T COG4105 34 ASELYNEGLTE----LQKGNYEEAIKYFEALDSR---H--PFSPYSEQAQLDLA----------YAYYKNGEYDLALAYI 94 (254)
T ss_pred HHHHHHHHHHH----HhcCCHHHHHHHHHHHHHc---C--CCCcccHHHHHHHH----------HHHHhcccHHHHHHHH
Confidence 45666667666 4899999999999876543 1 33444567777777 7779999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHHHHHhcCCCchHHH-----------
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--------QKFDEAERMQLKAIAIKEKVLGKDDYEVG----------- 174 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~----------- 174 (303)
.+-+..+ |.+|....++...|.++... .-..+|..-+++.+.-+ |+++...
T Consensus 95 drFi~ly-----P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d 164 (254)
T COG4105 95 DRFIRLY-----PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLND 164 (254)
T ss_pred HHHHHhC-----CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHH
Confidence 9988874 56777777788778776553 22334555555555443 3333221
Q ss_pred ---HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 175 ---LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 175 ---~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
.--..+|..|. +.|.+--|+..++.+++-.+ ..+....++..+..+|...|-
T Consensus 165 ~LA~~Em~IaryY~-kr~~~~AA~nR~~~v~e~y~------------------------~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 165 ALAGHEMAIARYYL-KRGAYVAAINRFEEVLENYP------------------------DTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHHHHHHH-HhcChHHHHHHHHHHHhccc------------------------cccchHHHHHHHHHHHHHhCC
Confidence 12245788997 99999999999999988766 233566778889999999999
Q ss_pred HHHHHHHHHHH
Q psy4339 252 FEKMTEFTNKL 262 (303)
Q Consensus 252 ~~~A~~~~~~~ 262 (303)
.++|....+.+
T Consensus 220 ~~~a~~~~~vl 230 (254)
T COG4105 220 TDEAKKTAKVL 230 (254)
T ss_pred hHHHHHHHHHH
Confidence 99998876554
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.33 E-value=2.2e-06 Score=55.08 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=55.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 138 IGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 138 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
|..+|...+++++|++++++++.+. |.....+...|.++. .+|++++|...++++++..|++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELD--------PDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhC--------cccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCc
Confidence 4678999999999999999999874 666778999999997 9999999999999999988833
No 175
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=1.3e-05 Score=68.32 Aligned_cols=118 Identities=19% Similarity=0.110 Sum_probs=96.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...++++.|+..+++..+. .|.. ...++.++...++-.+|++.+.+++.. .|.....+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~--------~pev---~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER--------DPEV---AVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc--------CCcH---HHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 4445667889999888885552 3443 345899999999999999999999943 24447778
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
...|..+. ..|+++.|+.+.++++...| .....|..||.+|...|++++|+-
T Consensus 238 ~~Qa~fLl-~k~~~~lAL~iAk~av~lsP---------------------------~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 238 NLQAEFLL-SKKKYELALEIAKKAVELSP---------------------------SEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhCc---------------------------hhHHHHHHHHHHHHhcCCHHHHHH
Confidence 88999998 99999999999999999988 566779999999999999999998
Q ss_pred HHHHH
Q psy4339 258 FTNKL 262 (303)
Q Consensus 258 ~~~~~ 262 (303)
....+
T Consensus 290 aLNs~ 294 (395)
T PF09295_consen 290 ALNSC 294 (395)
T ss_pred HHhcC
Confidence 66555
No 176
>KOG2300|consensus
Probab=98.30 E-value=0.00051 Score=58.71 Aligned_cols=174 Identities=11% Similarity=0.055 Sum_probs=115.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCC--cHH----HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch--
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSE--NLQ----VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH-- 76 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~--~~~----~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 76 (303)
.+-++.+.++-++++..-++....+ .|- ....+.++..|- .-.|++.+|+.-.....+.+.+..++--
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~----lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCR----LVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 4556777777777777655543322 111 234555666444 5799999999999999999887533211
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
...+.+...+| .-...-+.++.|+..|..|.+..... ...+.+..|+|.+|...|+-+.-.+.
T Consensus 364 ~~~~~ih~LlG----------lys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~-- 426 (629)
T KOG2300|consen 364 AHEAQIHMLLG----------LYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKA-- 426 (629)
T ss_pred HhHHHHHHHHh----------hHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHH--
Confidence 12445566666 33367889999999999999975432 23456678999999998776543333
Q ss_pred HHHHHHHHhcCCCc-------hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 157 KAIAIKEKVLGKDD-------YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 157 ~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++.. ++.+ ...+.+++--|... |.++++.||...+.+.+++..
T Consensus 427 --ld~i----~p~nt~s~ssq~l~a~~~~v~glfa-f~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 427 --LDLI----GPLNTNSLSSQRLEASILYVYGLFA-FKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred --HHhc----CCCCCCcchHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhcc
Confidence 3321 2221 12344566667666 489999999999999999885
No 177
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.28 E-value=5.4e-06 Score=70.53 Aligned_cols=73 Identities=18% Similarity=0.012 Sum_probs=62.9
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHH
Q psy4339 74 ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAER 153 (303)
Q Consensus 74 ~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 153 (303)
..+|.....++|+| ..|...|+|++|+..|++++++. ++++....+++|+|.+|..+|++++|+.
T Consensus 69 ~~dP~~a~a~~NLG----------~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 69 EADVKTAEDAVNLG----------LSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred cCCCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34677889999999 66699999999999999999972 4444444679999999999999999999
Q ss_pred HHHHHHHH
Q psy4339 154 MQLKAIAI 161 (303)
Q Consensus 154 ~~~~al~~ 161 (303)
++++|+++
T Consensus 134 ~LrrALel 141 (453)
T PLN03098 134 CLRTALRD 141 (453)
T ss_pred HHHHHHHh
Confidence 99999986
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.2e-05 Score=60.20 Aligned_cols=124 Identities=18% Similarity=0.059 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+|..++.|..||.+| ..+|+++.|...|.+|+++. +++| ..+..+|.++ ..-.....-.+
T Consensus 151 ~nP~d~egW~~Lg~~y----m~~~~~~~A~~AY~~A~rL~-----g~n~---~~~~g~aeaL-------~~~a~~~~ta~ 211 (287)
T COG4235 151 QNPGDAEGWDLLGRAY----MALGRASDALLAYRNALRLA-----GDNP---EILLGLAEAL-------YYQAGQQMTAK 211 (287)
T ss_pred hCCCCchhHHHHHHHH----HHhcchhHHHHHHHHHHHhC-----CCCH---HHHHHHHHHH-------HHhcCCcccHH
Confidence 4688889999999877 79999999999999999982 3444 4444455333 11123335568
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL 183 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 183 (303)
+...+++++.. +|....+...||..+...|+|.+|...++..++.. ..+.|....+-..++..
T Consensus 212 a~~ll~~al~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 212 ARALLRQALAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence 89999999985 45667888999999999999999999999988764 44555554444444443
No 179
>KOG4234|consensus
Probab=98.21 E-value=0.00012 Score=55.26 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..+-.=|+-+ +..|+|++|..-|..|++++... ........|.|.| .+...++.++.|+.-
T Consensus 94 kad~lK~EGN~~----F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nra----------aa~iKl~k~e~aI~d 156 (271)
T KOG4234|consen 94 KADSLKKEGNEL----FKNGDYEEANSKYQEALESCPST---STEERSILYSNRA----------AALIKLRKWESAIED 156 (271)
T ss_pred HHHHHHHHHHHh----hhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhH----------HHHHHhhhHHHHHHH
Confidence 456667778777 59999999999999999996543 1233567788888 777999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.+|+++ .|....++...|..|..+.+|++|++-|++.+++.
T Consensus 157 csKaiel--------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 157 CSKAIEL--------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHhhHhc--------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 9999997 45666778889999999999999999999998764
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.20 E-value=6.7e-06 Score=51.94 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=46.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
...|++++|+..|++++.. +|....+...+|.+|...|++++|...+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4689999999999999986 45556778899999999999999999999988643
No 181
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.18 E-value=3.6e-05 Score=63.40 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=84.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+++++.|.+.++..-++ +++.. ..+++..|. ..+...+.+.+|...|++..+ ..
T Consensus 142 L~~~R~dlA~k~l~~~~~~-----~eD~~-----l~qLa~awv------~l~~g~e~~~~A~y~f~El~~--------~~ 197 (290)
T PF04733_consen 142 LKMNRPDLAEKELKNMQQI-----DEDSI-----LTQLAEAWV------NLATGGEKYQDAFYIFEELSD--------KF 197 (290)
T ss_dssp HHTT-HHHHHHHHHHHHCC-----SCCHH-----HHHHHHHHH------HHHHTTTCCCHHHHHHHHHHC--------CS
T ss_pred HHcCCHHHHHHHHHHHHhc-----CCcHH-----HHHHHHHHH------HHHhCchhHHHHHHHHHHHHh--------cc
Confidence 5899999999888765433 22222 223332221 111333468899999888433 22
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY-HKAEKLYFRSIEINDN 207 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~-~~A~~~~~~al~~~~~ 207 (303)
+....+++.+|.++..+|+|++|...+++++.. .|....++.|++.+.. .+|+. +.+.+++.+.....|+
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~-~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSL-HLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHH-HTT-TCHHHHHHHHHCHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHhCCC
Confidence 344567889999999999999999999998753 2445567889999987 89998 6677787777666664
Q ss_pred hhh
Q psy4339 208 LKL 210 (303)
Q Consensus 208 ~~~ 210 (303)
||.
T Consensus 269 h~~ 271 (290)
T PF04733_consen 269 HPL 271 (290)
T ss_dssp SHH
T ss_pred ChH
Confidence 443
No 182
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.16 E-value=0.0012 Score=55.16 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH---------hcC--------------CCchHHHHHHHHHHHHHHHhhcC
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEK---------VLG--------------KDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------~~~--------------~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
....++.-+...|+.++|.+..+++++-... ..+ ..+|+....+..||..+. +.+.
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~ 343 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKL 343 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhH
Confidence 4456778888999999999999888764211 000 123344467889999997 9999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
|.+|..+++.+++..+ ....+..+|.++...|+..+|.+.. +.+
T Consensus 344 w~kA~~~leaAl~~~~----------------------------s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 344 WGKASEALEAALKLRP----------------------------SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHHhcCC----------------------------ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999988766 2344788999999999999999944 444
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00013 Score=58.77 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=84.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh---cHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ---KFDEAE 152 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~ 152 (303)
+|.-+.-+..|| .+|..+|+++.|...|.+|+++. +++| ..+..+|.++..+. .-.++.
T Consensus 152 nP~d~egW~~Lg----------~~ym~~~~~~~A~~AY~~A~rL~-----g~n~---~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 152 NPGDAEGWDLLG----------RAYMALGRASDALLAYRNALRLA-----GDNP---EILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred CCCCchhHHHHH----------HHHHHhcchhHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcCCcccHHHH
Confidence 566667778888 77799999999999999999973 3444 44667787776654 356899
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 153 RMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 153 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+++++... |....+...||..+. .+|+|.+|...++..++..+
T Consensus 214 ~ll~~al~~D--------~~~iral~lLA~~af-e~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 214 ALLRQALALD--------PANIRALSLLAFAAF-EQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHhcC--------CccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCC
Confidence 9999998753 566788999999996 99999999999999998877
No 184
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.14 E-value=5.7e-06 Score=46.60 Aligned_cols=42 Identities=31% Similarity=0.347 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL 78 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (303)
++.++.+||.++ ..+|++++|+.++++++++.++.+|++||+
T Consensus 1 ta~~~~~la~~~----~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAY----RAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHH----HHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHH----HhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 357899999777 699999999999999999999999999885
No 185
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.00014 Score=55.67 Aligned_cols=99 Identities=16% Similarity=0.013 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+...+..++..| ++| -+.|-++-|.--|.+++.+ .|..+.+.+.+| .-+...|+|+.
T Consensus 60 ~~eeRA~l~fERG-vlY---DSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG----------~Yl~~a~~fda 117 (297)
T COG4785 60 TDEERAQLLFERG-VLY---DSLGLRALARNDFSQALAI--------RPDMPEVFNYLG----------IYLTQAGNFDA 117 (297)
T ss_pred ChHHHHHHHHHhc-chh---hhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHH----------HHHHhcccchH
Confidence 4556788899999 566 6999999999999999988 677888999999 44588999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
|.+.|...+++ +|..-.+..|-|..+..-|+|.-|.+-+.+
T Consensus 118 a~eaFds~~EL--------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 118 AYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHhhhHhcc--------CCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 99999988885 344445566667666667777777665544
No 186
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.13 E-value=0.0022 Score=53.53 Aligned_cols=187 Identities=10% Similarity=-0.030 Sum_probs=121.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+|+++.|-.+..++-+.. +++ ........+ .....+|+++.|.....++++.. +.+
T Consensus 129 ~qrgd~~~an~yL~eaae~~------~~~-~l~v~ltra----------rlll~~~d~~aA~~~v~~ll~~~-----pr~ 186 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELA------GDD-TLAVELTRA----------RLLLNRRDYPAARENVDQLLEMT-----PRH 186 (400)
T ss_pred HhcccHHHHHHHHHHHhccC------CCc-hHHHHHHHH----------HHHHhCCCchhHHHHHHHHHHhC-----cCC
Confidence 47899999999998876651 122 223334445 55578999999999998888852 334
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH-------------------HHHhcC-CC----------chH----HH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI-------------------KEKVLG-KD----------DYE----VG 174 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------~~~~~~-~~----------~~~----~~ 174 (303)
| ..+.-...+|...|++.+...++.+.-+. ..+... .. .|. .+
T Consensus 187 ~---~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p 263 (400)
T COG3071 187 P---EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP 263 (400)
T ss_pred h---HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcCh
Confidence 4 44556678889999988887777543221 000000 00 000 12
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----hhhHHHHhhhccccccHHHHHHhHHHHHHhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL-----EYHYRDLKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l-----~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
.....++.-+. ..|+.++|.+..+++++..-+ |.+...+-.+ +...++.+.....+|+.+..+..||..+.+.
T Consensus 264 ~l~~~~a~~li-~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 264 ELVVAYAERLI-RLGDHDEAQEIIEDALKRQWD-PRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN 341 (400)
T ss_pred hHHHHHHHHHH-HcCChHHHHHHHHHHHHhccC-hhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 23445666676 889999999999999976543 2222222222 3334555555566777778899999999999
Q ss_pred hcHHHHHHHHHHH
Q psy4339 250 ENFEKMTEFTNKL 262 (303)
Q Consensus 250 g~~~~A~~~~~~~ 262 (303)
+.+.+|..++++.
T Consensus 342 ~~w~kA~~~leaA 354 (400)
T COG3071 342 KLWGKASEALEAA 354 (400)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999977654
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.12 E-value=0.0001 Score=52.94 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF 211 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 211 (303)
...+..-|.-....|+|++|++.|+.....+ +..+....+...+|.+|. ..|++++|+..+++-+++.|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP----- 78 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHP----- 78 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCC-----
Confidence 3457788999999999999999998876544 445666788999999994 99999999999999999888
Q ss_pred hhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 212 SASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 212 ~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
.||....+++..|.++..+..
T Consensus 79 -------------------~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 79 -------------------THPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred -------------------CCCCccHHHHHHHHHHHHHhh
Confidence 455666667777777666654
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.11 E-value=0.00072 Score=50.62 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=92.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
....+.|++.+|...|++++.- -.......+..++......+++..|...+++..+.- .. -......
T Consensus 97 ~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~---pa---~r~pd~~ 163 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN---PA---FRSPDGH 163 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC---Cc---cCCCCch
Confidence 6668999999999999999873 122334567789999999999999999998876542 11 1123345
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.-+|.++. .+|++.+|...|+.++...| + .......+..+.++|+.++|..
T Consensus 164 Ll~aR~la-a~g~~a~Aesafe~a~~~yp---------------------------g-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLA-AQGKYADAESAFEVAISYYP---------------------------G-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHH-hcCCchhHHHHHHHHHHhCC---------------------------C-HHHHHHHHHHHHHhcchhHHHH
Confidence 67899998 99999999999999998887 1 1234557788889998888887
Q ss_pred -HHHHH
Q psy4339 258 -FTNKL 262 (303)
Q Consensus 258 -~~~~~ 262 (303)
+....
T Consensus 215 q~~~v~ 220 (251)
T COG4700 215 QYVAVV 220 (251)
T ss_pred HHHHHH
Confidence 54443
No 189
>KOG3785|consensus
Probab=98.10 E-value=0.00035 Score=57.48 Aligned_cols=173 Identities=18% Similarity=0.089 Sum_probs=107.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
...+|..|+..++-.+..- ..+-......+| .++...|+|++|+..|.-+..- .+.|
T Consensus 34 s~rDytGAislLefk~~~~-------~EEE~~~~lWia----------~C~fhLgdY~~Al~~Y~~~~~~------~~~~ 90 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLD-------REEEDSLQLWIA----------HCYFHLGDYEEALNVYTFLMNK------DDAP 90 (557)
T ss_pred hcccchhHHHHHHHhhccc-------hhhhHHHHHHHH----------HHHHhhccHHHHHHHHHHHhcc------CCCC
Confidence 6789999999888766431 222234555667 7779999999999999876651 1222
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH----------HHHhcCCC---------chHHHHHHHHHHHHHHHhhcC
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI----------KEKVLGKD---------DYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~---------~~~~~~~~~~la~~~~~~~g~ 190 (303)
+....+||.|+..+|.|.+|.....+|-+. .-+ ++.. -.++..-...||.+. |..-.
T Consensus 91 --~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk-lndEk~~~~fh~~LqD~~EdqLSLAsvh-YmR~H 166 (557)
T KOG3785|consen 91 --AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK-LNDEKRILTFHSSLQDTLEDQLSLASVH-YMRMH 166 (557)
T ss_pred --cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCcHHHHHHHHHHHhhhHHHHHhHHHHH-HHHHH
Confidence 345679999999999999999888766211 001 0000 011223345677777 47888
Q ss_pred HHHHHHHHHHHHHhhhhh----hhhhhhhhhhhhhHHH---HhhhccccccHHHHHHhHHHHHHhh
Q psy4339 191 YHKAEKLYFRSIEINDNL----KLFSASYSGLEYHYRD---LKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~----~~~~~~~~~l~~~~~a---~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
|.+|++.|++++.-.++. -.++-+++.+.+..-+ +..+-..+|+...+.+..+-..++.
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 999999999998766632 1345555555544422 3444445555544454444444443
No 190
>KOG4648|consensus
Probab=98.10 E-value=2.3e-05 Score=63.85 Aligned_cols=105 Identities=15% Similarity=0.042 Sum_probs=87.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+.|+.+|.|++|+++|.+++.. +|.....+.|.|..|..+++|..|+.-+..|+.+.+ ....+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------~Y~KAY 168 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--------LYVKAY 168 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------HHHHHH
Confidence 8889999999999999999986 233345678999999999999999999999998863 356788
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLE 219 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~ 219 (303)
...|.+-. .+|+..+|.+-++.++.+-|+.-.+...+..+.
T Consensus 169 SRR~~AR~-~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 169 SRRMQARE-SLGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHHHH-HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 89999986 999999999999999999886555544444443
No 191
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.07 E-value=2.7e-05 Score=49.89 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=50.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.+|...+++++|++++++++.+ +|.....+...|.++..+|++++|...++++++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 5668999999999999999997 45566778899999999999999999999999764
No 192
>KOG2300|consensus
Probab=98.02 E-value=0.0034 Score=53.86 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..+.-+| .|- ...+.|+.|+..|..|.+..+.. .-.+.+..|+| .+|.+.|+-+.-.+
T Consensus 366 ~~~ih~LlG-lys---~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlA----------i~YL~~~~~ed~y~- 425 (629)
T KOG2300|consen 366 EAQIHMLLG-LYS---HSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLA----------ISYLRIGDAEDLYK- 425 (629)
T ss_pred HHHHHHHHh-hHh---hhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHH----------HHHHHhccHHHHHH-
Confidence 456777778 343 68999999999999999884431 22667778888 55677666544332
Q ss_pred HHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 113 HQNALVLSLKHFGEN-------NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 113 ~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
+++.. ++. +...+.+++--|...+.++++.||...+.+.+++.... +....++-.+.-||.+..
T Consensus 426 ---~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~l 496 (629)
T KOG2300|consen 426 ---ALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFL 496 (629)
T ss_pred ---HHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHH
Confidence 33321 122 12345677778888899999999999999999986321 223445666788999996
Q ss_pred HhhcCHHHHHHHHHHHHHhhh
Q psy4339 186 YHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 186 ~~~g~~~~A~~~~~~al~~~~ 206 (303)
..|+..++....+-+++...
T Consensus 497 -slgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 497 -SLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred -HhcchHHHHhccchHHHHHh
Confidence 99999999999999999888
No 193
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.00 E-value=0.0019 Score=44.49 Aligned_cols=105 Identities=15% Similarity=0.025 Sum_probs=80.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhCCC---c-HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCc----h
Q psy4339 100 LISVQFYKEAELLHQNALVLSLKHFGEN---N-VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD----Y 171 (303)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~~~~~~~~---~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~ 171 (303)
....|-|++|...+++|+++...+.... + ...+.++..|+..+..+|+|++++..-.+++..+.+. |.-+ .
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL~qdeGk 97 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GELHQDEGK 97 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TTSTHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-cccccccch
Confidence 3567899999999999999987663322 1 1245678889999999999999999999999887664 2222 2
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+.+.++.|..+. ..|+.++|+..|+.+-++..
T Consensus 98 lWIaaVfsra~Al~-~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 98 LWIAAVFSRAVALE-GLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHH
Confidence 35566788999998 99999999999999988765
No 194
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.96 E-value=0.00026 Score=55.46 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=83.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-----chHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD-----DYEVGL 175 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~ 175 (303)
.....+++|++.|.-|+-.... .+.++...+..+..+|++|..+|+-+....++++|++.+++.+... ......
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3456788999999998887654 3445567888999999999999998888888888888877754222 234567
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++-+|.+.. +.|++++|..++.+++....
T Consensus 167 l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNR-RLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHcCCC
Confidence 8889999997 99999999999999987544
No 195
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.96 E-value=0.0023 Score=56.64 Aligned_cols=172 Identities=16% Similarity=-0.011 Sum_probs=111.1
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhH---HHHHHHHHHHHHHhhhhHHHH--hhhhHHHHHHHHHHHHHHHHHhh
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLT---SAHRVKALILEEIALDSNELI--SVQFYKEAELLHQNALVLSLKHF 124 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~~~ 124 (303)
-.||-+.++..+.++.+. .+-..|... -.|+..- .. .+-. .....+.|.+.+......
T Consensus 200 F~gdR~~GL~~L~~~~~~----~~i~~~la~L~LL~y~~~~-~~-------~~~~~~~~~~~~~a~~lL~~~~~~----- 262 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS----ENIRSPLAALVLLWYHLVV-PS-------FLGIDGEDVPLEEAEELLEEMLKR----- 262 (468)
T ss_pred cCCcHHHHHHHHHHHhcc----CCcchHHHHHHHHHHHHHH-HH-------HcCCcccCCCHHHHHHHHHHHHHh-----
Confidence 468999999999887552 111222211 1111111 00 0001 344556666666666664
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 125 GENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 125 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.|.-.-.+..-|.++...|+.++|++.+++++...... ..-...+++.+|.++. .+++|++|..++.+..+.
T Consensus 263 ---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 263 ---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred ---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhc
Confidence 34445567789999999999999999999998643332 1223456889999998 999999999999998875
Q ss_pred hhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH-------HHHHHHHHHHHHHHHHHhhhhcC
Q psy4339 205 NDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF-------EKMTEFTNKLSEWKILRETNELN 275 (303)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~ 275 (303)
.. ...+...+..|.++...|+. ++|.++++.+ ..+..+..|.
T Consensus 335 s~--------------------------WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v---p~l~~k~~gk 383 (468)
T PF10300_consen 335 SK--------------------------WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV---PKLKQKKAGK 383 (468)
T ss_pred cc--------------------------cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH---HHHHhhhccC
Confidence 44 12444567788888888888 7777766555 4444444443
No 196
>KOG4642|consensus
Probab=97.95 E-value=0.00014 Score=56.47 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=83.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+.+..-.+|+.|+..|.+++.+ +|..+..+.|-|.|+.++++++....-..+|+++. |+.+..+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--------~N~vk~h 81 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--------PNLVKAH 81 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--------hHHHHHH
Confidence 5557778999999999999986 56677789999999999999999999999999875 7788999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
+.+|.... ....|++|+..+.+|.++...
T Consensus 82 ~flg~~~l-~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 82 YFLGQWLL-QSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHH-hhccccHHHHHHHHHHHHHhc
Confidence 99999998 999999999999999988873
No 197
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.94 E-value=0.0027 Score=50.26 Aligned_cols=172 Identities=16% Similarity=0.033 Sum_probs=117.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+.+++|++.|+....- -+..|..-.+...++.++| ..++|++|+....+-+... +.+|+..-+++
T Consensus 47 ~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Y----k~~~y~~A~~~~drFi~ly-----P~~~n~dY~~Y 112 (254)
T COG4105 47 KGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYY----KNGEYDLALAYIDRFIRLY-----PTHPNADYAYY 112 (254)
T ss_pred cCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHH----hcccHHHHHHHHHHHHHhC-----CCCCChhHHHH
Confidence 34455555555544422 2445666788899998886 9999999999999988773 56788888888
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc---------HHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN---------VQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
..|+++.. .++ .....+.-..+|..-++..+.-+....-..+ ...+.--..+|..|.+.|.+--|...+
T Consensus 113 lkgLs~~~-~i~-~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 113 LKGLSYFF-QID-DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHhc-cCC-ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 88865310 000 2335555566777777777765432100000 012222346899999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
+++++-. ++.+.+..++..+..+|. .+|-.++|...-
T Consensus 191 ~~v~e~y-----~~t~~~~eaL~~l~eaY~-~lgl~~~a~~~~ 227 (254)
T COG4105 191 EEVLENY-----PDTSAVREALARLEEAYY-ALGLTDEAKKTA 227 (254)
T ss_pred HHHHhcc-----ccccchHHHHHHHHHHHH-HhCChHHHHHHH
Confidence 9998876 445677788999999996 999999998764
No 198
>KOG4340|consensus
Probab=97.94 E-value=0.0011 Score=53.33 Aligned_cols=187 Identities=16% Similarity=0.072 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFY 106 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~ 106 (303)
..+|....-...-+..+| +.+.+..|+....... +++. ...+...-+ .+.+..+++
T Consensus 72 ql~P~~~qYrlY~AQSLY----~A~i~ADALrV~~~~~---------D~~~L~~~~lqLqa----------AIkYse~Dl 128 (459)
T KOG4340|consen 72 QLHPELEQYRLYQAQSLY----KACIYADALRVAFLLL---------DNPALHSRVLQLQA----------AIKYSEGDL 128 (459)
T ss_pred hhChHHHHHHHHHHHHHH----HhcccHHHHHHHHHhc---------CCHHHHHHHHHHHH----------HHhcccccC
Confidence 345666655555566665 6777777766554321 1122 222222222 222455555
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 186 (303)
..+....++ ..+ ...+....+.|-+..+.|+++.|++-|+.|++.. +..|.+ -+++|.++ |
T Consensus 129 ~g~rsLveQ-------lp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs-----Gyqpll---AYniALaH-y 189 (459)
T KOG4340|consen 129 PGSRSLVEQ-------LPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS-----GYQPLL---AYNLALAH-Y 189 (459)
T ss_pred cchHHHHHh-------ccC---CCccchhccchheeeccccHHHHHHHHHHHHhhc-----CCCchh---HHHHHHHH-H
Confidence 554443332 211 2345677899999999999999999999999864 455554 47899999 5
Q ss_pred hhcCHHHHHHHHHHHHHhhh-hhhhhhhhh--hhhhhhHHHHh-hhccccccHHHHHHhHHHHHHhhhcHHHHHHH
Q psy4339 187 HMLEYHKAEKLYFRSIEIND-NLKLFSASY--SGLEYHYRDLK-LFSASYSGLEYDYRGLIHVYECLENFEKMTEF 258 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~--~~l~~~~~a~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (303)
+.|+++.|.++..+.++-.. +||.+++-. .... -+.+. ...-.......+.+--+.++.+.|+++.|.+-
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD--vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~ea 263 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGID--VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEA 263 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc--hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHH
Confidence 99999999999988876443 566543221 1110 00000 00000112445566667788888888888763
No 199
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.94 E-value=0.0025 Score=43.89 Aligned_cols=123 Identities=16% Similarity=0.055 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh----hHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL----LTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
++.+|..|+..-- +..-|-|++|..-+++|+++...+....-.+ -+.++..|+ ..+...|+|++
T Consensus 6 Va~aY~aLs~ae~--ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls----------~A~~~Lgry~e 73 (144)
T PF12968_consen 6 VAMAYMALSDAER--QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLS----------GALAGLGRYDE 73 (144)
T ss_dssp HHHHHHHHHHHHH--HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHH----------HHHHHTT-HHH
T ss_pred HHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHH----------HHHHhhccHHH
Confidence 4455555553321 1257899999999999999987764433222 455666666 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 109 AELLHQNALVLSLKHFGE---NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
++....+++..+.....- .....+.+.++-|..+...|+.++|+..|+.+-++....-|
T Consensus 74 ~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 74 CLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 999999999988764211 12345667788999999999999999999999887765433
No 200
>KOG4648|consensus
Probab=97.92 E-value=0.00011 Score=59.92 Aligned_cols=96 Identities=18% Similarity=0.147 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
+-.-|+.| +.+|.|++|+++|.+++.. +|...-.+.|.| ..|.++..|..|+.-+..|
T Consensus 100 iKE~GN~y----FKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA----------~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 100 IKERGNTY----FKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRA----------LAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred HHHhhhhh----hhccchhHHHHHhhhhhcc--------CCCCccchhhHH----------HHHHHHHHHHHHHHhHHHH
Confidence 35567777 6999999999999999887 344445667778 6779999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.+ +.....+|...|..-..+|...+|.+-++.++++.
T Consensus 158 iaL--------d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 158 IAL--------DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHh--------hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 997 33567788899999999999999999999998874
No 201
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.91 E-value=0.0047 Score=48.44 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=74.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH-HHHHH
Q psy4339 99 ELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE-VGLSV 177 (303)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~ 177 (303)
++...|+++.|...+.+++... +........+...+..+...+++++|+..+.+++... +. ....+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~ 205 (291)
T COG0457 139 ALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLN--------PDDDAEAL 205 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--------cccchHHH
Confidence 3466777777777777774421 0001333444555555667777777777777776654 22 34556
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
..++..+. ..+++++|...+.+++...+ ........++..+...|+++++..
T Consensus 206 ~~~~~~~~-~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 206 LNLGLLYL-KLGKYEEALEYYEKALELDP---------------------------DNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred HHhhHHHH-HcccHHHHHHHHHHHHhhCc---------------------------ccHHHHhhHHHHHHHcCCHHHHHH
Confidence 67777775 77777777777777776666 233446666777776666777777
Q ss_pred HH
Q psy4339 258 FT 259 (303)
Q Consensus 258 ~~ 259 (303)
..
T Consensus 258 ~~ 259 (291)
T COG0457 258 AL 259 (291)
T ss_pred HH
Confidence 44
No 202
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.91 E-value=0.019 Score=52.96 Aligned_cols=198 Identities=13% Similarity=-0.068 Sum_probs=127.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+...+.+...+|.+++ ....++++|+.++++++.+.++. .-......+...++ .++...+...
T Consensus 54 ~p~~ea~~~l~la~iL~---~eT~n~~~Ae~~L~k~~~l~~~~--~~~d~k~~~~~ll~----------~i~~~~~~~~- 117 (608)
T PF10345_consen 54 SPRQEARVRLRLASILL---EETENLDLAETYLEKAILLCERH--RLTDLKFRCQFLLA----------RIYFKTNPKA- 117 (608)
T ss_pred CHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHH----------HHHHhcCHHH-
Confidence 33457889999999997 79999999999999999997651 11111334444555 5556666666
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNI-GRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
|...++++++.++.. .+......+.-+ .......+++..|++.++......... .++.-...+....|.+.. .
T Consensus 118 a~~~l~~~I~~~~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l-~ 191 (608)
T PF10345_consen 118 ALKNLDKAIEDSETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHL-R 191 (608)
T ss_pred HHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHh-c
Confidence 999999999987752 122222222223 333333489999999999998887542 232333344455567776 7
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhh--hccccccHHHHHHhHHHH--HHhhhcHHHHHHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKL--FSASYSGLEYDYRGLIHV--YECLENFEKMTEFTNKLS 263 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~--~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~~~ 263 (303)
.+..+++++..+++..... .. -+..++....++..+-.+ +...|+++.+....+.+.
T Consensus 192 ~~~~~d~~~~l~~~~~~~~-------------------~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQAR-------------------SLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCchhHHHHHHHHHHHHh-------------------hcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888999999999977665 21 111233333444444333 446778888888776664
Q ss_pred HHHH
Q psy4339 264 EWKI 267 (303)
Q Consensus 264 ~~~~ 267 (303)
..-.
T Consensus 253 ~~~~ 256 (608)
T PF10345_consen 253 QFLD 256 (608)
T ss_pred HHHH
Confidence 4333
No 203
>KOG3617|consensus
Probab=97.90 E-value=0.0061 Score=55.78 Aligned_cols=128 Identities=12% Similarity=0.066 Sum_probs=82.7
Q ss_pred CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH----HHHHHhcCCCchH---------HHHHHHHHHHHHHHhhcCHHH
Q psy4339 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI----AIKEKVLGKDDYE---------VGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 127 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~g~~~~ 193 (303)
+....-.+|++.|.-+...++.+.|+++|+++- ++.+-. ..+++. ....|..+|.... ..|+.+.
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~Gemda 930 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDA 930 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHh-cccchHH
Confidence 344556789999999999999999999999862 221111 111111 1245677898887 9999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 194 AEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 194 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
|+.+|..|-..+. .+. ..-..+...+|-....+. ....+.+.||..|...|+..+|..++..+
T Consensus 931 Al~~Y~~A~D~fs---~Vr-I~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFS---MVR-IKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHhhhhhh---hee-eEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999998876554 010 011112222332222221 23345778999999999999999966444
No 204
>KOG1464|consensus
Probab=97.89 E-value=0.0035 Score=49.91 Aligned_cols=210 Identities=13% Similarity=0.071 Sum_probs=133.8
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
.+.|...|++++++- |+....-..++-.+-.+. +.+++|++.+..|.+.+...+.....+..... .+.+-
T Consensus 43 p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~----f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs--IN~Il 112 (440)
T KOG1464|consen 43 PKEALSSFQKVLELE----GEKGEWGFKALKQMIKIN----FRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS--INSIL 112 (440)
T ss_pred HHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHHHhccccHHH--HHHHH
Confidence 456777777777662 333333456677777677 59999999999999999988776555444311 11111
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
..-....+.+--.+.|+..++..++. .+......+-..||.+|...+.|.+-.+.+++.-..+..-.|
T Consensus 113 ----------DyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 113 ----------DYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ----------HHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 11123344455555666666655543 223333445567999999999999988888887777665555
Q ss_pred CCch----HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHH-HHHHhH
Q psy4339 168 KDDY----EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLE-YDYRGL 242 (303)
Q Consensus 168 ~~~~----~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~-~~~~~l 242 (303)
.++. ....++.---..|. .+++-.+-..+|++++.+.. .-.||... .+.-.=
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT-~qKnNKkLK~lYeqalhiKS----------------------AIPHPlImGvIRECG 237 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYT-EQKNNKKLKALYEQALHIKS----------------------AIPHPLIMGVIRECG 237 (440)
T ss_pred chhhhccchhhhhHhhHhhhhh-hhcccHHHHHHHHHHHHhhc----------------------cCCchHHHhHHHHcC
Confidence 4432 23444544556776 78888888889999998766 23355433 233445
Q ss_pred HHHHHhhhcHHHHHH-HHHHH
Q psy4339 243 IHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 243 a~~~~~~g~~~~A~~-~~~~~ 262 (303)
|.++...|++++|.. ++++.
T Consensus 238 GKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 238 GKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CccccccchHHHHHhHHHHHH
Confidence 667777788888877 77766
No 205
>KOG2796|consensus
Probab=97.87 E-value=0.0036 Score=49.62 Aligned_cols=139 Identities=16% Similarity=0.043 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN 115 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 115 (303)
+.+.+..++ .-.|.|.-+.+.+.+.++. ..+..|.+ ...+| .+-+..|+.+.|..+|++
T Consensus 179 Vmy~~~~~l----lG~kEy~iS~d~~~~vi~~----~~e~~p~L---~s~Lg----------r~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 179 VMYSMANCL----LGMKEYVLSVDAYHSVIKY----YPEQEPQL---LSGLG----------RISMQIGDIKTAEKYFQD 237 (366)
T ss_pred HHHHHHHHH----hcchhhhhhHHHHHHHHHh----CCcccHHH---HHHHH----------HHHHhcccHHHHHHHHHH
Confidence 444455455 4778888888888887773 12334444 44455 444889999999999998
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHH
Q psy4339 116 ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195 (303)
Q Consensus 116 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~ 195 (303)
.-+...+..+. ........+.+.+|.-.+++.+|...+.+++... +..+.+.++.|.+.. -.|+..+|+
T Consensus 238 vek~~~kL~~~--q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcll-Ylg~l~DAi 306 (366)
T KOG2796|consen 238 VEKVTQKLDGL--QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLL-YLGKLKDAL 306 (366)
T ss_pred HHHHHhhhhcc--chhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHH-HHHHHHHHH
Confidence 87765554222 2233456788999999999999999999887642 555667789999998 699999999
Q ss_pred HHHHHHHHhhh
Q psy4339 196 KLYFRSIEIND 206 (303)
Q Consensus 196 ~~~~~al~~~~ 206 (303)
+..+.++.+.|
T Consensus 307 K~~e~~~~~~P 317 (366)
T KOG2796|consen 307 KQLEAMVQQDP 317 (366)
T ss_pred HHHHHHhccCC
Confidence 99999998888
No 206
>KOG3616|consensus
Probab=97.85 E-value=0.0025 Score=57.53 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=95.5
Q ss_pred hhcccHHHHHHHHHHH------HHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHH----
Q psy4339 49 YSSGRFTESRRHAEKA------IQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALV---- 118 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---- 118 (303)
.+..++++|+++|++. +++.+-.+... ....--..| .-+..+|+++.|+..|-+|-.
T Consensus 672 eki~d~dkale~fkkgdaf~kaielarfafp~e---vv~lee~wg----------~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 672 EKIHDFDKALECFKKGDAFGKAIELARFAFPEE---VVKLEEAWG----------DHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHH---HhhHHHHHh----------HHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 5777888888887753 34433322111 111111223 333566777777766654332
Q ss_pred ---------------HHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH-------------------HHHHHH
Q psy4339 119 ---------------LSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA-------------------IAIKEK 164 (303)
Q Consensus 119 ---------------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------------------l~~~~~ 164 (303)
+...+ .+.......|..+|.-|...|+|+-|+++|.++ .++.++
T Consensus 739 ieaai~akew~kai~ildni--qdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNI--QDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHh--hhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHH
Confidence 22211 111122234556777788888888887777443 233333
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH------HHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc-HHH
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY------FRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG-LEY 237 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~ 237 (303)
..|+ ..+...+...+.-+. ..|+|.+|..+| .+++.+...+.. ...-+...+..|++ ...
T Consensus 817 ~~~~--e~t~~~yiakaedld-ehgkf~eaeqlyiti~~p~~aiqmydk~~~----------~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 817 CHGP--EATISLYIAKAEDLD-EHGKFAEAEQLYITIGEPDKAIQMYDKHGL----------DDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred hcCc--hhHHHHHHHhHHhHH-hhcchhhhhheeEEccCchHHHHHHHhhCc----------chHHHHHHHHhChhhhhH
Confidence 3333 334556677777777 889998888777 244444432111 11111223333443 234
Q ss_pred HHHhHHHHHHhhhcHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~ 257 (303)
....+|.-+...|+.+.|.+
T Consensus 884 t~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HHHHHHHHHHhccChhHHHH
Confidence 45567777777777666666
No 207
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.84 E-value=0.0015 Score=56.38 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=95.1
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHh-hhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELIS-VQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...+...-++...+|+++ +|+.+.+|..+| .. .....+|+++++++++..+..++.+.
T Consensus 180 RERnp~aRIkaA~eALei--------~pdCAdAYILLA-------------EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~ 238 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--------NPDCADAYILLA-------------EEEASTIVEAEELLRQAVKAGEASLGKSQ 238 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcc-------------cccccCHHHHHHHHHHHHHHHHHhhchhh
Confidence 678888999999999998 577788888777 32 33468899999999988776554321
Q ss_pred H-----------------HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 129 V-----------------QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 129 ~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
. ....+-..+|+|..++|+.+||++.+++.++.. + ..+...+..+|..++. .++.|
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-----p-~~~~l~IrenLie~LL-elq~Y 311 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-----P-NLDNLNIRENLIEALL-ELQAY 311 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-----C-ccchhhHHHHHHHHHH-hcCCH
Confidence 0 123455689999999999999999999887643 1 1235668899999998 99999
Q ss_pred HHHHHHHHHH
Q psy4339 192 HKAEKLYFRS 201 (303)
Q Consensus 192 ~~A~~~~~~a 201 (303)
.++...+.+-
T Consensus 312 ad~q~lL~kY 321 (539)
T PF04184_consen 312 ADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHh
Confidence 9988887763
No 208
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.84 E-value=0.00069 Score=52.00 Aligned_cols=160 Identities=13% Similarity=-0.027 Sum_probs=113.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+...+..+...| ..|-..|-+.-|.--|.+++.+ .|....+++.+|..+...|+|+-|.+.|
T Consensus 61 ~eeRA~l~fERG----------vlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaF 122 (297)
T COG4785 61 DEERAQLLFERG----------VLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAF 122 (297)
T ss_pred hHHHHHHHHHhc----------chhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHh
Confidence 334566777777 6667888888888889999987 4566778899999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----------------
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL----------------- 218 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l----------------- 218 (303)
...+++. |..-.+..|.|..+. --|++.-|.+-+.+-.+-.|++|.-.-.++-.
T Consensus 123 ds~~ELD--------p~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 123 DSVLELD--------PTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRA 193 (297)
T ss_pred hhHhccC--------CcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 9998764 555567778888884 68999999888887777766665322222111
Q ss_pred -----------------h-----hhHHHHhhhccccc----cHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 219 -----------------E-----YHYRDLKLFSASYS----GLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 219 -----------------~-----~~~~a~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+ .+.+..+....++. ....+++-||..+...|+.++|..+++..
T Consensus 194 ~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 194 EKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred HhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 0 01111122222211 24567889999999999999999866544
No 209
>KOG3617|consensus
Probab=97.82 E-value=0.015 Score=53.33 Aligned_cols=206 Identities=17% Similarity=0.080 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH----HHHHhhCCcchhhh----------HHHHHHHHHHHHHHhhhh
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAI----QTFKNLLPENHLLL----------TSAHRVKALILEEIALDS 97 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~ 97 (303)
..-.++++.|.-+ ...++.+.|+++|+++- ++..-. .++|.. ...+..-|
T Consensus 856 HLr~Tyy~yA~~L----ear~Di~~AleyyEK~~~hafev~rmL--~e~p~~~e~Yv~~~~d~~L~~WWg---------- 919 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYL----EARRDIEAALEYYEKAGVHAFEVFRML--KEYPKQIEQYVRRKRDESLYSWWG---------- 919 (1416)
T ss_pred ehhhhHHHHHHHH----HhhccHHHHHHHHHhcCChHHHHHHHH--HhChHHHHHHHHhccchHHHHHHH----------
Confidence 3445677777544 68889999999998763 221111 111211 12333344
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHh-----hCCCc--------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH----
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKH-----FGENN--------VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA---- 160 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---- 160 (303)
......|+.+.|+.+|..|-+.+... .|.-+ .....+.+.||..|...|++.+|+.+|.+|-.
T Consensus 920 qYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnA 999 (1416)
T KOG3617|consen 920 QYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNA 999 (1416)
T ss_pred HHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44478899999999999988876432 11111 11223456899999999999999999987643
Q ss_pred --HHHHhcCCCchH-HH--------HHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhh
Q psy4339 161 --IKEKVLGKDDYE-VG--------LSVGHLASLYNYHML-EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLF 228 (303)
Q Consensus 161 --~~~~~~~~~~~~-~~--------~~~~~la~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~ 228 (303)
+++.. +-.+ .+ .-+...|..|. ..| ..+.|..+|.+|=-+... ..++.. .....+++..
T Consensus 1000 IRlcKEn---d~~d~L~nlal~s~~~d~v~aArYyE-e~g~~~~~AVmLYHkAGm~~kA-LelAF~----tqQf~aL~lI 1070 (1416)
T KOG3617|consen 1000 IRLCKEN---DMKDRLANLALMSGGSDLVSAARYYE-ELGGYAHKAVMLYHKAGMIGKA-LELAFR----TQQFSALDLI 1070 (1416)
T ss_pred HHHHHhc---CHHHHHHHHHhhcCchhHHHHHHHHH-HcchhhhHHHHHHHhhcchHHH-HHHHHh----hcccHHHHHH
Confidence 33331 1011 00 01223344454 555 666676666655333320 000000 0001122221
Q ss_pred ccc-cc-cHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 SAS-YS-GLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 ~~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.++ ++ ..+..+..-+..+....+|++|..++-..
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111 11 12344677788888999999998855443
No 210
>KOG4642|consensus
Probab=97.81 E-value=0.0003 Score=54.61 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+.-+..-|+.+ +...+|+.|+++|.+|+.+ +|..+.-+.|-+ .+|....+++.+..-.
T Consensus 10 a~qlkE~gnk~----f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnra----------lchlk~~~~~~v~~dc 67 (284)
T KOG4642|consen 10 AEQLKEQGNKC----FIPKRYDDAIDCYSRAICI--------NPTVASYYTNRA----------LCHLKLKHWEPVEEDC 67 (284)
T ss_pred HHHHHhccccc----cchhhhchHHHHHHHHHhc--------CCCcchhhhhHH----------HHHHHhhhhhhhhhhH
Confidence 44455567677 4788999999999999987 676677788888 6668999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
++++++ .|..+...+.+|.+......|++|+..+++|..+.+..
T Consensus 68 rralql--------~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 68 RRALQL--------DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHhc--------ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 999997 56778888999999999999999999999999988764
No 211
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.80 E-value=0.00053 Score=53.76 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=78.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcch-----hhhH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENH-----LLLT 80 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~ 80 (303)
..++.|+..|..|+-..+.. +.++...+..+..+|++| +..|+-+....++++|++.+++.+...+ .+..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWly----R~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLY----RDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHh----hccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 35788999999999886643 455567899999999766 8999988888889999888877643222 2345
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q psy4339 81 SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVL 119 (303)
Q Consensus 81 ~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 119 (303)
.+.+.+| .+.++.|++++|..+|.+++..
T Consensus 166 ~l~YLig----------eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIG----------ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHH----------HHHHHhCCHHHHHHHHHHHHcC
Confidence 6778888 6679999999999999999885
No 212
>KOG2796|consensus
Probab=97.79 E-value=0.0024 Score=50.56 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=78.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.++.-.|+|.-++..+.+.++. ++|........||.+-++-|+.+-|..+++++-+...+..+ ......+.
T Consensus 185 ~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~~~V~ 255 (366)
T KOG2796|consen 185 NCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGKIMVL 255 (366)
T ss_pred HHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchhHHHH
Confidence 6667889999999999998883 34444556678999999999999999999987765544422 23345677
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+.+.+|. .++++.+|...+.+++...+
T Consensus 256 ~n~a~i~l-g~nn~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 256 MNSAFLHL-GQNNFAEAHRFFTEILRMDP 283 (366)
T ss_pred hhhhhhee-cccchHHHHHHHhhccccCC
Confidence 88999998 99999999999999887666
No 213
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=0.0087 Score=45.32 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=73.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..++.++.... |.....-+-.+||.+...+|.+++|+..+.... ++...+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~~w~~~~~ 162 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIK---------EESWAAIVA 162 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cccHHHHHH
Confidence 667899999999999999987532 233344556789999999999999998886542 223344456
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...|.++. ..|+-++|...|++++....
T Consensus 163 elrGDill-~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 163 ELRGDILL-AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHhhhHHH-HcCchHHHHHHHHHHHHccC
Confidence 67899998 99999999999999998754
No 214
>KOG1070|consensus
Probab=97.77 E-value=0.0049 Score=59.36 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=128.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...++.++|.+..++|+....-.-+.+......++.|+- ..-|.-+.-.+.|++|.+.+.
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE-------------n~yG~eesl~kVFeRAcqycd------- 1528 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLE-------------NAYGTEESLKKVFERACQYCD------- 1528 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH-------------HhhCcHHHHHHHHHHHHHhcc-------
Confidence 489999999999999998752211122233555555555 233455566777888777632
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh-
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN- 207 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~- 207 (303)
| ...+..|..+|..-+++++|.++++..++-+. ....+|..+|..+. ++.+-+.|...+.+|++-.|.
T Consensus 1529 ~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1529 A--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred h--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchh
Confidence 2 34678899999999999999999999887652 34567888999997 899999999999999999986
Q ss_pred -hhhhhhhhhhh----hhhHHH---HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 208 -LKLFSASYSGL----EYHYRD---LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 208 -~~~~~~~~~~l----~~~~~a---~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
|-.+..-..+| +...++ ++..-..+|.....|.-+.+.-.+.|+.+.+..+++.
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 44443334444 334443 3444445666667787788888888888888885443
No 215
>KOG2047|consensus
Probab=97.77 E-value=0.0052 Score=54.61 Aligned_cols=180 Identities=12% Similarity=0.061 Sum_probs=111.7
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHh----hCCcchhh
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN----LLPENHLL 78 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~ 78 (303)
.....+++|..+|++|.++-- +.-.+.+.++..-|..- ....+++.|+.+.++|.-.-.. .+...+|.
T Consensus 398 e~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~waemE----lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAEME----LRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHH----HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 345678888888888887621 12235677777777655 4778899999999888754221 12233343
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
....+..+- ++.... +.-...|-++.....|.+.+++.- -.| .+..|.|.++....-|++|.+.|++.
T Consensus 470 Q~rlhrSlk-iWs~y~---DleEs~gtfestk~vYdriidLri-----aTP---qii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 470 QARLHRSLK-IWSMYA---DLEESLGTFESTKAVYDRIIDLRI-----ATP---QIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred HHHHHHhHH-HHHHHH---HHHHHhccHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 333332221 111111 333444555555666666666521 233 45668899999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+++= +.-.+....|......- |.-.+.+.|..+|++|++.+|
T Consensus 538 I~LFk~---p~v~diW~tYLtkfi~r-ygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 538 ISLFKW---PNVYDIWNTYLTKFIKR-YGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred CccCCC---ccHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCC
Confidence 988621 22223333344444343 355689999999999999888
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0026 Score=47.74 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
+..-...||+.+ ...|++.+|..+|++++.-. + .+++ ..+..++ ......+++..|...
T Consensus 88 Tvqnr~rLa~al----~elGr~~EA~~hy~qalsG~---f-A~d~---a~lLglA----------~Aqfa~~~~A~a~~t 146 (251)
T COG4700 88 TVQNRYRLANAL----AELGRYHEAVPHYQQALSGI---F-AHDA---AMLLGLA----------QAQFAIQEFAAAQQT 146 (251)
T ss_pred hHHHHHHHHHHH----HHhhhhhhhHHHHHHHhccc---c-CCCH---HHHHHHH----------HHHHhhccHHHHHHH
Confidence 445677888888 69999999999999998642 1 1222 3444455 556888999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
+++..+.-.. .........+|.++..+|++.+|+..|+.++..+ +. + ..-...+..+. ++|+.+
T Consensus 147 Le~l~e~~pa------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg-~---~ar~~Y~e~La-~qgr~~ 210 (251)
T COG4700 147 LEDLMEYNPA------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PG-P---QARIYYAEMLA-KQGRLR 210 (251)
T ss_pred HHHHhhcCCc------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC-H---HHHHHHHHHHH-Hhcchh
Confidence 8887774211 1122345678999999999999999999999865 21 2 23345567776 899999
Q ss_pred HHHHHHHHHHHhhh
Q psy4339 193 KAEKLYFRSIEIND 206 (303)
Q Consensus 193 ~A~~~~~~al~~~~ 206 (303)
+|..-+....+...
T Consensus 211 ea~aq~~~v~d~~~ 224 (251)
T COG4700 211 EANAQYVAVVDTAK 224 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887776665433
No 217
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.73 E-value=0.021 Score=52.80 Aligned_cols=176 Identities=15% Similarity=0.025 Sum_probs=108.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|+.++|+++.+.++...... .....+.++.++| .+..-.|++++|..+.+.+.+..++. ...
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~---~~~~r~~~~sv~~----------~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~ 533 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEA---AYRSRIVALSVLG----------EAAHIRGELTQALALMQQAEQMARQH--DVY 533 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccc---cchhhhhhhhhhh----------HHHHHhchHHHHHHHHHHHHHHHHHc--ccH
Confidence 46999999999999999874332 2222456677777 66689999999999999999988764 233
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
.....+....+.++..+|+...|.. .++....+.......|.........+.++. ..-+++.+..-....++...
T Consensus 534 ~l~~~~~~~~s~il~~qGq~~~a~~--~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~-~~~r~~~~~~ear~~~~~~~-- 608 (894)
T COG2909 534 HLALWSLLQQSEILEAQGQVARAEQ--EKAFNLIREQHLEQKPRHEFLVRIRAQLLR-AWLRLDLAEAEARLGIEVGS-- 608 (894)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHhhhcccchhHHHHHHHHHH-HHHHHhhhhHHhhhcchhhh--
Confidence 3445566778899999994333222 222222222112222322222233333332 33347777777777776654
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
...........+...|+.+....|+.++|......+
T Consensus 609 ------------------~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 609 ------------------VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred ------------------hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111121123334468999999999999999866544
No 218
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.71 E-value=0.0035 Score=46.87 Aligned_cols=94 Identities=23% Similarity=0.145 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q psy4339 54 FTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK 133 (303)
Q Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 133 (303)
|+.|.+.++..... +|.-+..+++-|..+.+++-....-....-+++|+.-|++|+.+ +|....
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHH
Confidence 34455555444433 45556777777765543331111112234556666666666665 466678
Q ss_pred HHHHHHHHHHHhhc----HHHHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQK----FDEAERMQLKAIAIKE 163 (303)
Q Consensus 134 ~~~~la~~~~~~~~----~~~A~~~~~~al~~~~ 163 (303)
++.++|++|..++. ..+|..+|++|.+-++
T Consensus 71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 88999999988765 2345555555554443
No 219
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.70 E-value=0.00088 Score=49.97 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF---DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
-|+.|.+.++..... +|.....+++=|..+..+.++ .++.+++++|+.-++....- +|....+++++|
T Consensus 6 ~FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lG 76 (186)
T PF06552_consen 6 FFEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHH
Confidence 345555555554443 455566777777777776555 34656666665554443222 267778899999
Q ss_pred HHHHHhhcC-----------HHHHHHHHHHHHHhhh
Q psy4339 182 SLYNYHMLE-----------YHKAEKLYFRSIEIND 206 (303)
Q Consensus 182 ~~~~~~~g~-----------~~~A~~~~~~al~~~~ 206 (303)
.+|. .++. |++|..+|++|....|
T Consensus 77 nA~t-s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 77 NAYT-SLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHH-HHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 9996 7764 4555555555555555
No 220
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.70 E-value=0.0012 Score=44.56 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=62.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGEN-NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 179 (303)
...|+|..|.+.+.+..+......... ......+..++|.++...|++++|+..+++|+++.++. .|......++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~ 86 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSW 86 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH
Confidence 678999999999999999876643222 12355678899999999999999999999999999886 444455555555
Q ss_pred HHHH
Q psy4339 180 LASL 183 (303)
Q Consensus 180 la~~ 183 (303)
+..+
T Consensus 87 ~~~l 90 (94)
T PF12862_consen 87 LANL 90 (94)
T ss_pred HHHH
Confidence 4444
No 221
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.70 E-value=0.00012 Score=39.52 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++.+||.+|..+|+|++|+++|++++.+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999877644
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.69 E-value=0.0052 Score=54.48 Aligned_cols=124 Identities=10% Similarity=-0.004 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 53 RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
+.+.|...+...... .|.-...+...| ..+...|+.++|++.+++++....+. .....
T Consensus 248 ~~~~a~~lL~~~~~~--------yP~s~lfl~~~g----------R~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~ 305 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--------YPNSALFLFFEG----------RLERLKGNLEEAIESFERAIESQSEW----KQLHH 305 (468)
T ss_pred CHHHHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHhcCHHHHHHHHHHhccchhhH----HhHHH
Confidence 445555555554443 455556666777 66699999999999999998643321 12234
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH-------HHHHHHHHHHHHhh
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY-------HKAEKLYFRSIEIN 205 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~-------~~A~~~~~~al~~~ 205 (303)
-++..+|.++..+.+|++|..++.+..+.. .-..+...+..|.++. ..|+. ++|.+++.++-...
T Consensus 306 l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WSka~Y~Y~~a~c~~-~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 306 LCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWSKAFYAYLAAACLL-MLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHH-hhccchhhhhhHHHHHHHHHHHHHHH
Confidence 568899999999999999999999887632 1223445567788886 89999 67777777666555
Q ss_pred h
Q psy4339 206 D 206 (303)
Q Consensus 206 ~ 206 (303)
.
T Consensus 378 ~ 378 (468)
T PF10300_consen 378 Q 378 (468)
T ss_pred h
Confidence 4
No 223
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.68 E-value=0.00012 Score=38.90 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+++++|.+|. .+|++++|+.+|++++++.|
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCc
Confidence 357899999997 99999999999999999987
No 224
>KOG0551|consensus
Probab=97.62 E-value=0.019 Score=47.15 Aligned_cols=105 Identities=15% Similarity=0.052 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+..+-.-| +-|+..++|..|...|.++|+.- .++....+..|.|-|-+....|+|..|+.-+.+|
T Consensus 80 ~Aen~KeeG----------N~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 80 QAENYKEEG----------NEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHh----------HHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666 77899999999999999999852 2344456788999999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+. |....+++.=|.++. .+.++++|..+++..+.+..
T Consensus 146 l~~~--------P~h~Ka~~R~Akc~~-eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 146 LKLK--------PTHLKAYIRGAKCLL-ELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HhcC--------cchhhhhhhhhHHHH-HHHHHHHHHHHHhhhhhhhH
Confidence 8763 677788899999996 99999999999999887766
No 225
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.62 E-value=0.0086 Score=45.59 Aligned_cols=129 Identities=16% Similarity=0.036 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy4339 57 SRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYG 136 (303)
Q Consensus 57 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 136 (303)
-++-++.-++-.+... .......++..+| ..|.+.|+.++|++.|.++.+.. .........+.
T Consensus 15 ~~~~Le~elk~~~~n~--~kesir~~~~~l~----------~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l 77 (177)
T PF10602_consen 15 ELEKLEAELKDAKSNL--GKESIRMALEDLA----------DHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCL 77 (177)
T ss_pred HHHHHHHHHHHHHhcc--chHHHHHHHHHHH----------HHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHH
Confidence 3344444444444432 2344667788888 77799999999999999988753 23445678888
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
++-.+....+++.....+..++-.+.+. |.+..........-|..+. ..++|.+|-..|-.+....
T Consensus 78 ~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l-~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 78 NVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANL-AQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHH-HhchHHHHHHHHHccCcCC
Confidence 9999999999999999999999888766 2332333334555667776 7899999999998876544
No 226
>KOG0545|consensus
Probab=97.60 E-value=0.0016 Score=50.94 Aligned_cols=100 Identities=12% Similarity=-0.003 Sum_probs=83.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCC---cHH-------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGEN---NVQ-------TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
+-++..|+|.+|...|+.|+...+...-.. .|. ....+.|.+.|+...|+|-+++++..+.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~------ 259 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH------ 259 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc------
Confidence 777999999999999999999876653222 222 2346789999999999999999999988864
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+|....+++..|.+.. ..=+.++|..-+.+++.+.|
T Consensus 260 --~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 260 --HPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred --CCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcCh
Confidence 4777889999999997 88899999999999998877
No 227
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.60 E-value=0.00019 Score=38.11 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.++. .+|++++|+.++++++.+.|
T Consensus 2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYY-QLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCc
Confidence 56889999997 99999999999999999987
No 228
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.59 E-value=0.00022 Score=37.92 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.++.++|.+|..+|++++|+.+|++|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999999874
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.015 Score=42.72 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=70.9
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhh--hHH-HHHHHH----HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLL--LTS-AHRVKA----LILEEIALDSNELISVQFYKEAELLHQNALVLSLK 122 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~-~~~~la----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 122 (303)
..|+.+.++..+++++.++...+-++.+. +.. ....+- .+...++ ..+...|++++|+..+++++..
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~l~~--- 91 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLA---EALLEAGDYEEALRLLQRALAL--- 91 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHH---HHHHHTT-HHHHHHHHHHHHHH---
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH---HHHHhccCHHHHHHHHHHHHhc---
Confidence 56777888888888888776543322111 111 111111 1111111 6668899999999999999996
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 123 HFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 123 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
+|..-.++..+-.+|...|+..+|+..|++......+-.|..+..
T Consensus 92 -----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 92 -----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp -----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred -----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455667888999999999999999999999998888766655433
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.57 E-value=0.0048 Score=53.31 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=85.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch---------
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY--------- 171 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------- 171 (303)
.+..+...-++..++|+++. |+-+.+|.-||.= ......+|+++++++++..+..++.+..
T Consensus 179 WRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE 248 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence 67788888899999999973 4455666655542 1234688999999999888776554321
Q ss_pred --------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHH
Q psy4339 172 --------EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLI 243 (303)
Q Consensus 172 --------~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la 243 (303)
....+...+|.+.+ ++|+.+||++.++..++..+. .+...++.+|.
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCar-klGr~~EAIk~~rdLlke~p~-------------------------~~~l~IrenLi 302 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCAR-KLGRLREAIKMFRDLLKEFPN-------------------------LDNLNIRENLI 302 (539)
T ss_pred hhhccccchhhhhHHHHHHHHH-HhCChHHHHHHHHHHHhhCCc-------------------------cchhhHHHHHH
Confidence 12345678999998 999999999999999887661 12334566666
Q ss_pred HHHHhhhcHHHHHHH
Q psy4339 244 HVYECLENFEKMTEF 258 (303)
Q Consensus 244 ~~~~~~g~~~~A~~~ 258 (303)
.++...+.+.++...
T Consensus 303 e~LLelq~Yad~q~l 317 (539)
T PF04184_consen 303 EALLELQAYADVQAL 317 (539)
T ss_pred HHHHhcCCHHHHHHH
Confidence 666666666665553
No 231
>KOG2047|consensus
Probab=97.56 E-value=0.016 Score=51.71 Aligned_cols=219 Identities=12% Similarity=0.029 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 91 (303)
+..|.+|+....-...... ....+..+|..| ...|+.+.|...|++|...- -+.-.+++.++.+-|
T Consensus 367 i~tyteAv~~vdP~ka~Gs--~~~Lw~~faklY----e~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~wa---- 432 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKAVGS--PGTLWVEFAKLY----ENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAWA---- 432 (835)
T ss_pred HHHHHHHHHccCcccCCCC--hhhHHHHHHHHH----HhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHHH----
Confidence 4455555544321111222 345777788544 79999999999999998761 122234566666666
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH----hhCCCcHH------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 92 EIALDSNELISVQFYKEAELLHQNALVLSLK----HFGENNVQ------TAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 92 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
..-.+..+++.|+.+.++|...=.. ......|. ...++...+......|-++.....|++.+++
T Consensus 433 ------emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 433 ------EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred ------HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5558889999999999998865221 11122222 2234556666667777778888888888776
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhh--------hhh---------hhhHHH
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASY--------SGL---------EYHYRD 224 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~l---------~~~~~a 224 (303)
. ..+..+..|.|..+. .-.-+++|...|++.+.+++ -|.+...+ .+. ..+.+|
T Consensus 507 r--------iaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 507 R--------IATPQIIINYAMFLE-EHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred h--------cCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5 223345678888887 77788999999999999887 22111111 111 123355
Q ss_pred HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++...+.+ .-..+...|..-..-|--..|++.++.+
T Consensus 577 L~~Cpp~~--aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 577 LDGCPPEH--AKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HhcCCHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55443222 2234555666767778888888855444
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.55 E-value=0.013 Score=44.53 Aligned_cols=124 Identities=10% Similarity=-0.000 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
++-++.-++-.+... ....+..++..+|..|.+.|+.++|++.|.++.+.. .........+.++-.+.. ..|
T Consensus 16 ~~~Le~elk~~~~n~--~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i-~~~ 87 (177)
T PF10602_consen 16 LEKLEAELKDAKSNL--GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAI-FFG 87 (177)
T ss_pred HHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHH-HhC
Confidence 333444444444332 344667789999999999999999999999987643 333456777888888886 899
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
++.....+..++-.... . +.+..........-|..+...++|.+|.+ +.+..
T Consensus 88 d~~~v~~~i~ka~~~~~-------------------~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 88 DWSHVEKYIEKAESLIE-------------------K--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred CHHHHHHHHHHHHHHHh-------------------c--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 99999999999988776 2 11111122233345566667899999988 54443
No 233
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.53 E-value=0.00025 Score=38.26 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++.+||.+|. .+|++++|+.+|++++.+.+
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc
Confidence 4789999998 99999999999999887765
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.49 E-value=0.041 Score=45.36 Aligned_cols=139 Identities=17% Similarity=0.096 Sum_probs=84.8
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHHHHHhh--CCcchhh--
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG-RFTESRRHAEKAIQTFKNL--LPENHLL-- 78 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g-~~~~A~~~~~~al~~~~~~--~~~~~~~-- 78 (303)
+..-++-|+.++.++-.......+......+..+++.|...+ ..+ ++++|..++++|.++++.. ....+++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~----~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL----SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH----HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 345678899999999887652222233457889999998885 788 9999999999999997551 1122222
Q ss_pred --hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 79 --LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 79 --~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
...++..++ .+|...+.++...+ ..++++..+... +++|.+.. ..+- +....++.+++.+.+.
T Consensus 81 elr~~iL~~La----------~~~l~~~~~~~~~k-a~~~l~~l~~e~-~~~~~~~~--L~l~-il~~~~~~~~~~~~L~ 145 (278)
T PF08631_consen 81 ELRLSILRLLA----------NAYLEWDTYESVEK-ALNALRLLESEY-GNKPEVFL--LKLE-ILLKSFDEEEYEEILM 145 (278)
T ss_pred HHHHHHHHHHH----------HHHHcCCChHHHHH-HHHHHHHHHHhC-CCCcHHHH--HHHH-HHhccCChhHHHHHHH
Confidence 455666666 66677666653333 444444444332 33343321 1121 2222667777777776
Q ss_pred HHHHH
Q psy4339 157 KAIAI 161 (303)
Q Consensus 157 ~al~~ 161 (303)
+.+..
T Consensus 146 ~mi~~ 150 (278)
T PF08631_consen 146 RMIRS 150 (278)
T ss_pred HHHHh
Confidence 66653
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.48 E-value=0.031 Score=43.68 Aligned_cols=165 Identities=23% Similarity=0.177 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
.......+..+ ...+++..+...+...... ...+.....+...+ ..+...+++..+...+
T Consensus 59 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 59 AGLLLLLALAL----LKLGRLEEALELLEKALEL------ELLPNLAEALLNLG----------LLLEALGKYEEALELL 118 (291)
T ss_pred hHHHHHHHHHH----HHcccHHHHHHHHHHHHhh------hhccchHHHHHHHH----------HHHHHHhhHHHHHHHH
Confidence 34555555444 5788888888888877654 12334455566666 5557777788888888
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGR-LYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
.+++..... + .......+. ++...|++++|...+.+++... +............+..+. ..++++
T Consensus 119 ~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~ 184 (291)
T COG0457 119 EKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLE-ALGRYE 184 (291)
T ss_pred HHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHH-HhcCHH
Confidence 877774221 1 112223333 8889999999999999985521 101234445556666675 889999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG-LEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+|+..+.+++...+ . .......++..+...+++.+|....
T Consensus 185 ~a~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 225 (291)
T COG0457 185 EALELLEKALKLNP---------------------------DDDAEALLNLGLLYLKLGKYEEALEYY 225 (291)
T ss_pred HHHHHHHHHHhhCc---------------------------ccchHHHHHhhHHHHHcccHHHHHHHH
Confidence 99999999988777 2 4556788899999999999998844
No 236
>KOG1915|consensus
Probab=97.41 E-value=0.07 Score=46.15 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=90.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
.+.++.+.|...|++-+-. ||.+ ..+...|.+-...|+..-|...|++|++.. .+.......+...
T Consensus 185 lRykeieraR~IYerfV~~--------HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~-----~~d~~~e~lfvaF 250 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLV--------HPKV-SNWIKYARFEEKHGNVALARSVYERAIEFL-----GDDEEAEILFVAF 250 (677)
T ss_pred HHhhHHHHHHHHHHHHhee--------cccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----hhHHHHHHHHHHH
Confidence 5566677777777765543 5544 457788999999999999999999999875 3334555666777
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhh--hh-------hhhhhhhhhhHHHH--------hhhccccccHHHHHHhHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLK--LF-------SASYSGLEYHYRDL--------KLFSASYSGLEYDYRGLI 243 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~-------~~~~~~l~~~~~a~--------~~~~~~~~~~~~~~~~la 243 (303)
|..-. .++.++.|..+|+-|+...|... .+ -.-+.+...+..++ +.....+|..-.+++..-
T Consensus 251 A~fEe-~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 251 AEFEE-RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 77776 88899999999999998887421 11 11111111111111 111223444445566666
Q ss_pred HHHHhhhcHHHHHH
Q psy4339 244 HVYECLENFEKMTE 257 (303)
Q Consensus 244 ~~~~~~g~~~~A~~ 257 (303)
.+-...|+.+.-.+
T Consensus 330 rL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 330 RLEESVGDKDRIRE 343 (677)
T ss_pred HHHHhcCCHHHHHH
Confidence 66666777766666
No 237
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.38 E-value=0.11 Score=48.44 Aligned_cols=176 Identities=16% Similarity=-0.003 Sum_probs=101.4
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.++++-+.++...- .......+.++..+|.+. .-.|++++|..+.+++.++.+.. +..+....+....+
T Consensus 474 ~e~a~~lar~al~~L~---~~~~~~r~~~~sv~~~a~----~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s 544 (894)
T COG2909 474 PEEAEDLARLALVQLP---EAAYRSRIVALSVLGEAA----HIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQS 544 (894)
T ss_pred HHHHHHHHHHHHHhcc---cccchhhhhhhhhhhHHH----HHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHH
Confidence 4556666666655422 122234566778888777 58999999999999999998774 11222333444445
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.+...+|+...|.. .++.........+..+.........+.++...-+++.+..-....+++.... .
T Consensus 545 ----------~il~~qGq~~~a~~--~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~-~ 611 (894)
T COG2909 545 ----------EILEAQGQVARAEQ--EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY-T 611 (894)
T ss_pred ----------HHHHHhhHHHHHHH--HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc-c
Confidence 44477883332222 2222221111112223222222233333333334777777777777665432 2
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.......+++.++.+.. ..|++++|...+.+......
T Consensus 612 ~~~~~~~~~~~~LA~l~~-~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 612 PQPLLSRLALSMLAELEF-LRGDLDKALAQLDELERLLL 649 (894)
T ss_pred cchhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhc
Confidence 222223334469999996 99999999999999887766
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.38 E-value=0.00059 Score=36.11 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.++..+|.++..+|++++|++++++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568899999999999999999999999874
No 239
>KOG0545|consensus
Probab=97.36 E-value=0.0077 Score=47.28 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC---cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP---ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
...++..-|+-+| ..|+|.+|...|+.|+...+...- +..|.+...-...--++.+++ .++...|+|-++
T Consensus 177 av~~l~q~GN~lf----k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~---QC~L~~~e~yev 249 (329)
T KOG0545|consen 177 AVPVLHQEGNRLF----KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYC---QCLLKKEEYYEV 249 (329)
T ss_pred hhHHHHHhhhhhh----hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHH---HHHhhHHHHHHH
Confidence 4567888898885 999999999999999988776543 333443322222222222222 778999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
++.....+.. +|....+|+.-|......-+.++|..-+.+++++.
T Consensus 250 leh~seiL~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 250 LEHCSEILRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHHhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 9998888874 56778899999999999999999999999999763
No 240
>KOG0551|consensus
Probab=97.35 E-value=0.015 Score=47.64 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
..+..+-.=|+-| +...+|..|...|.+++..- -.+|+ .+..|.|.| .+....|+|..|+
T Consensus 79 E~Aen~KeeGN~~----fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRA----------Aa~~~l~NyRs~l 139 (390)
T KOG0551|consen 79 EQAENYKEEGNEY----FKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRA----------AAQLYLGNYRSAL 139 (390)
T ss_pred HHHHHHHHHhHHH----HHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHH----------HHHHHHHHHHHHH
Confidence 4778888889877 59999999999999998761 12344 677888988 7778999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.-..+++.+ .|....++..=|.|+..+.++.+|..++++.+.+..
T Consensus 140 ~Dcs~al~~--------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 140 NDCSAALKL--------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHhc--------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999986 566778899999999999999999999998887753
No 241
>KOG2610|consensus
Probab=97.34 E-value=0.0058 Score=50.16 Aligned_cols=143 Identities=18% Similarity=0.098 Sum_probs=97.5
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.|...-+...--.++ +..|+.+.....+++.+... .++.|-...+....+ -.+...|-|++
T Consensus 132 d~PtDlla~kfsh~a~----fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~Gmya----------FgL~E~g~y~d 193 (491)
T KOG2610|consen 132 DYPTDLLAVKFSHDAH----FYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYA----------FGLEECGIYDD 193 (491)
T ss_pred hCchhhhhhhhhhhHH----HhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHH----------hhHHHhccchh
Confidence 4454443443333334 46777777777777655432 234454455555556 44578999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|++..++++++ ++....+...++.++...|++.++.++..+.-...+.. .......|...|..+. .-
T Consensus 194 AEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNyWH~Al~~i-E~ 260 (491)
T KOG2610|consen 194 AEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNYWHTALFHI-EG 260 (491)
T ss_pred HHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhhHHHHHhhh-cc
Confidence 99999999997 34445667788999999999999999998876655421 1223334556778887 78
Q ss_pred cCHHHHHHHHHHHH
Q psy4339 189 LEYHKAEKLYFRSI 202 (303)
Q Consensus 189 g~~~~A~~~~~~al 202 (303)
+.|+.|++.|.+-+
T Consensus 261 aeye~aleIyD~ei 274 (491)
T KOG2610|consen 261 AEYEKALEIYDREI 274 (491)
T ss_pred cchhHHHHHHHHHH
Confidence 99999999998654
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.34 E-value=0.00043 Score=39.30 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
.++..+|.+|..+|++++|++.|+++++.. |+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCCHHHHHHhhh
Confidence 357889999999999999999999999874 444455666654
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.34 E-value=0.00064 Score=38.56 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.+|. .+|++++|+..|+++++..|
T Consensus 2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYR-RLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCc
Confidence 35788999998 99999999999999999888
No 244
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.32 E-value=0.012 Score=39.68 Aligned_cols=80 Identities=18% Similarity=0.070 Sum_probs=58.9
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcch-hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENH-LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..|+|.+|.+.+.+..+.......... .....+..++| ..+...|++++|+..+++|+++.++. .|.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA----------~~~~~~G~~~~A~~~l~eAi~~Are~--~D~ 77 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLA----------ELHRRFGHYEEALQALEEAIRLAREN--GDR 77 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH----------HHHHHhCCHHHHHHHHHHHHHHHHHH--CCH
Confidence 789999999999999998776433221 12455666777 66689999999999999999999876 444
Q ss_pred HHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRL 141 (303)
Q Consensus 129 ~~~~~~~~~la~~ 141 (303)
.....++..+..+
T Consensus 78 ~~l~~al~~~~~l 90 (94)
T PF12862_consen 78 RCLAYALSWLANL 90 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555444
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.30 E-value=0.021 Score=41.99 Aligned_cols=97 Identities=16% Similarity=0.040 Sum_probs=70.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCC--------------cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGEN--------------NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
...|+.+.+...+++++.++.-..-++ ......+...++..+...|++++|+..+++++.+.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---- 92 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD---- 92 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS----
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC----
Confidence 445677788888888887764321111 11234566778889999999999999999999874
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|..-.++..+-.+|. ..|+..+|+..|++......
T Consensus 93 ----P~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 93 ----PYDEEAYRLLMRALA-AQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp ----TT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 666678889999997 99999999999999988776
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.29 E-value=0.00021 Score=37.95 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAE 152 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 152 (303)
|++|+++ +|....+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6777875 5777889999999999999999986
No 247
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.29 E-value=0.0009 Score=35.43 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.+|. .+|++++|+.+|++++++.|
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 46889999998 99999999999999999877
No 248
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.22 E-value=0.00027 Score=37.58 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.6
Q ss_pred cHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 234 GLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
....+++++|.+|...|++++|++
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 677889999999999999999863
No 249
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.21 E-value=0.0011 Score=35.10 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.++..+|.+|..+|++++|..+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578899999999999999999999999875
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.20 E-value=0.078 Score=45.20 Aligned_cols=147 Identities=15% Similarity=0.031 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHH
Q psy4339 13 LCSQLALKLKQVLFG--SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALIL 90 (303)
Q Consensus 13 ~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 90 (303)
...+..+.++..++. ......+..+...+.+. +..|+++.|...+.++...... .......+....+
T Consensus 123 ~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a----Rk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~a--- 191 (352)
T PF02259_consen 123 SVWEPILSLRRLVLSLILLPEELAETWLKFAKLA----RKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYA--- 191 (352)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH----HHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHH---
Confidence 344455555555443 12345677888888777 7999999999999987765211 1111223333334
Q ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHH-HHHHh-------------------------hCCCcHHHHHHHHHHHHHHHH
Q psy4339 91 EEIALDSNELISVQFYKEAELLHQNALV-LSLKH-------------------------FGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~-------------------------~~~~~~~~~~~~~~la~~~~~ 144 (303)
......|+..+|+..++..+. ..... ........+.++..+|.....
T Consensus 192 -------kllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 192 -------KLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred -------HHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 555889999999999988887 32221 011123456677788888877
Q ss_pred h------hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 145 M------QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 145 ~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
. +..+++...|.+++.+. |....++..+|..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~~~--------~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 265 LYSKLSSESSDEILKYYKEATKLD--------PSWEKAWHSWALFND 303 (352)
T ss_pred hccccccccHHHHHHHHHHHHHhC--------hhHHHHHHHHHHHHH
Confidence 7 88888899999988765 555567777777764
No 251
>KOG1915|consensus
Probab=97.19 E-value=0.13 Score=44.59 Aligned_cols=154 Identities=12% Similarity=0.002 Sum_probs=97.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH---HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLY---QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
...|+.+.-.+.|++|+.-..... ......-.+|.-+-.++ ....+.+.+...|+.++++. ++.+-..+.++
T Consensus 333 e~~g~~~~Ire~yErAIanvpp~~-ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiW 407 (677)
T KOG1915|consen 333 ESVGDKDRIRETYERAIANVPPAS-EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIW 407 (677)
T ss_pred HhcCCHHHHHHHHHHHHccCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHH
Confidence 455778888888888887321100 00011112233333222 34688999999999999874 34455677788
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhhH---HHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFS---ASYSGLEYHY---RDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~l~~~~---~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
...|..-. ++.+...|...+-.|+-.+|.+..+- ..=..|..+. +--+.+-..+|..+.++...|.+-...|+
T Consensus 408 lmyA~feI-Rq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 408 LMYAQFEI-RQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHH-HHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 88888887 89999999999999998888544221 1112222222 22244455567777777778877777787
Q ss_pred HHHHHHHHH
Q psy4339 252 FEKMTEFTN 260 (303)
Q Consensus 252 ~~~A~~~~~ 260 (303)
.+.|...+.
T Consensus 487 tdRaRaife 495 (677)
T KOG1915|consen 487 TDRARAIFE 495 (677)
T ss_pred HHHHHHHHH
Confidence 777776443
No 252
>KOG2610|consensus
Probab=97.16 E-value=0.077 Score=43.86 Aligned_cols=146 Identities=14% Similarity=-0.096 Sum_probs=93.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|++-+|.....+.++ +.|...-+...--..+..+|+.+.....+++.+.-. ..+.|-...+....
T Consensus 114 ~~~g~~h~a~~~wdklL~--------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMY 181 (491)
T ss_pred hccccccHHHHHHHHHHH--------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHH
Confidence 556777777777777666 344444444445566677777777777777766432 24455556666677
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhhccc-------cccHHHHHHhHHHHHHhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLFSAS-------YSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~~~~-------~~~~~~~~~~la~~~~~~ 249 (303)
+..+. ..|-|++|++..++++++.+++. ..+..+.--+.+.++++...+. .-....-|...|..+...
T Consensus 182 aFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 182 AFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred HhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 77777 88889999998888888888533 2333333334555554322211 112345567788889999
Q ss_pred hcHHHHHHHH
Q psy4339 250 ENFEKMTEFT 259 (303)
Q Consensus 250 g~~~~A~~~~ 259 (303)
+.++.|++.+
T Consensus 261 aeye~aleIy 270 (491)
T KOG2610|consen 261 AEYEKALEIY 270 (491)
T ss_pred cchhHHHHHH
Confidence 9999999944
No 253
>KOG3081|consensus
Probab=97.14 E-value=0.025 Score=45.05 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=79.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
.++.+++-|....++..++.+.. .-..++.++..++ ...+.+.+|.-+|++--+ ..
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~---tLtQLA~awv~la-------------~ggek~qdAfyifeE~s~--------k~ 203 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDA---TLTQLAQAWVKLA-------------TGGEKIQDAFYIFEELSE--------KT 203 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHh-------------ccchhhhhHHHHHHHHhc--------cc
Confidence 47788888888888887773321 0111444444444 555667777777766333 23
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
+....+.+..|.|+..+|+|++|...++.++.-. +....++.|+-.+-. ..|+..++..-+-
T Consensus 204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~-~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLAL-HLGKDAEVTERNL 265 (299)
T ss_pred CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHH-HhCCChHHHHHHH
Confidence 3445678899999999999999999999998643 333455667777766 7898877765443
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.13 E-value=0.023 Score=46.80 Aligned_cols=140 Identities=19% Similarity=0.190 Sum_probs=90.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcch-hhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHHHHHHHHHHHHHHHh--h
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENH-LLLTSAHRVKALILEEIALDSNELISVQ-FYKEAELLHQNALVLSLKH--F 124 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~--~ 124 (303)
..+|+++.|..++.++-...... .++. ..++..++++| ......+ +++.|..++++|.++.... .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~-~~~~~~~La~~~yn~G----------~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSL-DPDMAEELARVCYNIG----------KSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcC-CcHHHHHHHHHHHHHH----------HHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 37899999999999998876422 2222 23778888888 6668888 9999999999999997541 1
Q ss_pred CCCc----HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 125 GENN----VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 125 ~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
...+ .....++..++.+|...+.++...+ ..++++..+.-+| ++|.+.. ..+ .+.. +.++.+++.+.+.+
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~l-~il~-~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LKL-EILL-KSFDEEEYEEILMR 146 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HHH-HHHh-ccCChhHHHHHHHH
Confidence 1122 2345778899999999888765444 3444555444433 3343321 122 2222 34566666666666
Q ss_pred HHHhh
Q psy4339 201 SIEIN 205 (303)
Q Consensus 201 al~~~ 205 (303)
.+...
T Consensus 147 mi~~~ 151 (278)
T PF08631_consen 147 MIRSV 151 (278)
T ss_pred HHHhc
Confidence 65543
No 255
>KOG1464|consensus
Probab=97.09 E-value=0.097 Score=42.00 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=97.2
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
...+.+--..+|+..++..+.. .+...+..+...+| ..|...++|.+-...+++.-..++..-|.++.
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLg----------kl~fd~~e~~kl~KIlkqLh~SCq~edGedD~ 184 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLG----------KLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQ 184 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHh----------hhheeHHHHHHHHHHHHHHHHHhccccCchhh
Confidence 3445555566777777766654 33333555666677 67799999999888888777766655444432
Q ss_pred ----HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 130 ----QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS-VGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 130 ----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
....+|..--..|..+++-.+-..+|++++.+...+ .||.+..+ --.=|..+. +.|++++|..-|=+|.+-
T Consensus 185 kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHl-reg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 185 KKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCcccc-ccchHHHHHhHHHHHHhc
Confidence 345666666778888888888888999999886443 34554433 334467776 899999999988888876
Q ss_pred hh
Q psy4339 205 ND 206 (303)
Q Consensus 205 ~~ 206 (303)
..
T Consensus 261 YD 262 (440)
T KOG1464|consen 261 YD 262 (440)
T ss_pred cc
Confidence 65
No 256
>KOG3616|consensus
Probab=97.02 E-value=0.083 Score=48.22 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=81.5
Q ss_pred HHHHhhhhHHHHHHHHHH------HHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---cCC
Q psy4339 98 NELISVQFYKEAELLHQN------ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV---LGK 168 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~ 168 (303)
.+|....++++|+++|++ |+++.+-. -+..+...-..-|.-+...|+++-|+.+|-+|-.+.+.+ .|.
T Consensus 669 dlfeki~d~dkale~fkkgdaf~kaielarfa---fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 669 DLFEKIHDFDKALECFKKGDAFGKAIELARFA---FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh---CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 777888899999998876 44443322 122333333455777788888888888886553322110 110
Q ss_pred -C------------chHHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHH----hhhcc
Q psy4339 169 -D------------DYEVG-LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL----KLFSA 230 (303)
Q Consensus 169 -~------------~~~~~-~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~----~~~~~ 230 (303)
. +..+. ..+-.++.-|. ..|+|+-|.++|.++-.... -...|..-+.+..|+ +..++
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhya-n~~dfe~ae~lf~e~~~~~d----ai~my~k~~kw~da~kla~e~~~~ 820 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYA-NKGDFEIAEELFTEADLFKD----AIDMYGKAGKWEDAFKLAEECHGP 820 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhc-cchhHHHHHHHHHhcchhHH----HHHHHhccccHHHHHHHHHHhcCc
Confidence 0 01111 12345677776 88888888888866432111 111222222333332 22232
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
. .+...|..-+.-....|++.+|..
T Consensus 821 e--~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 821 E--ATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred h--hHHHHHHHhHHhHHhhcchhhhhh
Confidence 2 344455566666667777777665
No 257
>KOG1070|consensus
Probab=96.91 E-value=0.077 Score=51.68 Aligned_cols=160 Identities=18% Similarity=0.070 Sum_probs=113.2
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
-++.|.++.++||....-.-.+.--....++.||-+.| |.-+.-.+.|++|.+.+. | ..++..|
T Consensus 1473 EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-------G~eesl~kVFeRAcqycd-------~--~~V~~~L 1536 (1710)
T KOG1070|consen 1473 EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-------GTEESLKKVFERACQYCD-------A--YTVHLKL 1536 (1710)
T ss_pred hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-------CcHHHHHHHHHHHHHhcc-------h--HHHHHHH
Confidence 35677778888876641000111223455666666433 666777788888877743 2 2555666
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
. .+|..-+.+++|.++++..++-+. +....|...|..+..+++-+.|...+.+|+....+
T Consensus 1537 ~----------~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-- 1596 (1710)
T KOG1070|consen 1537 L----------GIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-- 1596 (1710)
T ss_pred H----------HHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch--
Confidence 6 667889999999999999888653 23456888999999999999999999999987633
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.+........|.+- |+.|+.+.+..+|+-.+...|.
T Consensus 1597 ----~eHv~~IskfAqLE-Fk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1597 ----QEHVEFISKFAQLE-FKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred ----hhhHHHHHHHHHHH-hhcCCchhhHHHHHHHHhhCcc
Confidence 22344556677777 5899999999999998887773
No 258
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=96.89 E-value=0.086 Score=42.19 Aligned_cols=108 Identities=12% Similarity=-0.036 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhhCCcc--hh-hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPEN--HL-LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
+=...+...+.+....+-+. ++ .....+-..|..|.-++-.........-.+.|...|++|+.+.++.+++.+|...
T Consensus 89 EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rL 168 (236)
T PF00244_consen 89 ELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRL 168 (236)
T ss_dssp HHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHH
Confidence 34455566666665543322 12 2344445566555544422211122334588999999999999998889999988
Q ss_pred HHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQS-MQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 133 ~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~ 163 (303)
....|.+.+|+. +|+.++|....++|++-.-
T Consensus 169 gl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 169 GLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 888899988855 8999999999999877553
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.89 E-value=0.13 Score=43.88 Aligned_cols=151 Identities=12% Similarity=0.045 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhhhh---cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 33 VAIAEDELAYALYVNEYS---SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
...+....|.++ .. .|+.++|+..+..++.. .......++..+|.+|..+-.. ..+......++|
T Consensus 178 ~~~i~~~yafAL----nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~-s~~~d~~~ldkA 245 (374)
T PF13281_consen 178 QHNIKFQYAFAL----NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLE-SNFTDRESLDKA 245 (374)
T ss_pred chHHHHHHHHHH----hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHH-cCccchHHHHHH
Confidence 344555666556 35 79999999999887544 2333456788889888644322 111234458888
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH-HHHHHhcCC----CchHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI-AIKEKVLGK----DDYEVGLSVGHLASLY 184 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~----~~~~~~~~~~~la~~~ 184 (303)
+.+|+++.++.. .. ..=.|++.++...|.-.+...-.++.. .+. ...|. .....-..+..++.+.
T Consensus 246 i~~Y~kgFe~~~--------~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~-~llg~kg~~~~~~dYWd~ATl~Ea~ 315 (374)
T PF13281_consen 246 IEWYRKGFEIEP--------DY-YSGINAATLLMLAGHDFETSEELRKIGVKLS-SLLGRKGSLEKMQDYWDVATLLEAS 315 (374)
T ss_pred HHHHHHHHcCCc--------cc-cchHHHHHHHHHcCCcccchHHHHHHHHHHH-HHHHhhccccccccHHHHHHHHHHH
Confidence 888988888631 11 122366777777776444433333332 221 11111 1112223345666777
Q ss_pred HHhhcCHHHHHHHHHHHHHhhh
Q psy4339 185 NYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 185 ~~~~g~~~~A~~~~~~al~~~~ 206 (303)
. -.|++++|+..+++++...+
T Consensus 316 v-L~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 316 V-LAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred H-HcCCHHHHHHHHHHHhhcCC
Confidence 6 78999999999999998866
No 260
>KOG2471|consensus
Probab=96.83 E-value=0.0049 Score=53.07 Aligned_cols=129 Identities=13% Similarity=-0.041 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh--hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL--LTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
+.++.-.+..+| ..|+|.+|.+.+... .+.+...+...|. .....+|+| .+++..|.|.-+..
T Consensus 240 ~~~l~LKsq~eY----~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlG----------cIh~~~~~y~~~~~ 304 (696)
T KOG2471|consen 240 SMALLLKSQLEY----AHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLG----------CIHYQLGCYQASSV 304 (696)
T ss_pred cHHHHHHHHHHH----HhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcc----------eEeeehhhHHHHHH
Confidence 345555565564 789999998887643 2222222222344 334567899 66699999999999
Q ss_pred HHHHHHH-HHHHhhCCC---------cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 112 LHQNALV-LSLKHFGEN---------NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 112 ~~~~al~-~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
+|.+|++ ...+....- ......+.+|.|..|...|++-.|.++|.++...+.. .| ..|..+|
T Consensus 305 ~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----nP---rlWLRlA 376 (696)
T KOG2471|consen 305 LFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----NP---RLWLRLA 376 (696)
T ss_pred HHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----Cc---HHHHHHH
Confidence 9999996 444432211 1124567889999999999999999999999998743 24 3466676
Q ss_pred HHHH
Q psy4339 182 SLYN 185 (303)
Q Consensus 182 ~~~~ 185 (303)
.++.
T Consensus 377 EcCi 380 (696)
T KOG2471|consen 377 ECCI 380 (696)
T ss_pred HHHH
Confidence 6664
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.66 E-value=0.35 Score=41.28 Aligned_cols=177 Identities=13% Similarity=0.037 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+.+..++--+| +...+|+.-+.+.+..-.+ ...+-+....+....|..+. ---..|+.++|+..+
T Consensus 141 ~div~~lllSy----RdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALn-------Rrn~~gdre~Al~il 205 (374)
T PF13281_consen 141 PDIVINLLLSY----RDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALN-------RRNKPGDREKALQIL 205 (374)
T ss_pred hhHHHHHHHHh----hhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHh-------hcccCCCHHHHHHHH
Confidence 34555555344 7888998888777653332 11122233444555564431 112289999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSM---------QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
..++.. ..+....++..+|.+|-.+ ...++|+..|.++.++. +. ...-.|++.++
T Consensus 206 ~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~-~Y~GIN~AtLL 269 (374)
T PF13281_consen 206 LPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PD-YYSGINAATLL 269 (374)
T ss_pred HHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------cc-ccchHHHHHHH
Confidence 887653 2233445677888887654 23455555555555442 21 12234677777
Q ss_pred HHhhcCHHHHHHHHHHHH-HhhhhhhhhhhhhhhhhhhHHHHhhhccc----cccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 185 NYHMLEYHKAEKLYFRSI-EINDNLKLFSASYSGLEYHYRDLKLFSAS----YSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 185 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~l~~~~~a~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
. ..|.-.+...-.++.. .+.. ..+.. ....-+..-.++.+....|++++|....
T Consensus 270 ~-~~g~~~~~~~el~~i~~~l~~--------------------llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~ 328 (374)
T PF13281_consen 270 M-LAGHDFETSEELRKIGVKLSS--------------------LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAA 328 (374)
T ss_pred H-HcCCcccchHHHHHHHHHHHH--------------------HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6 6776544443344433 2221 11111 1122234456777778899999999865
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+.+
T Consensus 329 e~~ 331 (374)
T PF13281_consen 329 EKA 331 (374)
T ss_pred HHH
Confidence 554
No 262
>KOG1550|consensus
Probab=96.64 E-value=0.38 Score=43.87 Aligned_cols=142 Identities=18% Similarity=0.079 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhh-hhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHHH
Q psy4339 33 VAIAEDELAYALYVN-EYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEAE 110 (303)
Q Consensus 33 ~~~~~~~la~~~y~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A~ 110 (303)
...+...+|.+++.- +....|.+.|+.+++.+.+-+++..... ...+.+.+|.+|..-. .... +++.|.
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~------~~~~~d~~~A~ 313 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL------GVEKIDYEKAL 313 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC------CCccccHHHHH
Confidence 446777888777521 2345699999999999988422211111 2345667774442111 0122 788899
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ---KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
.++.++-+. ++ ..+...+|.++..-. ++..|.++|..|... ....+.+.+|.+|.
T Consensus 314 ~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------G~~~A~~~la~~y~-- 371 (552)
T KOG1550|consen 314 KLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----------GHILAIYRLALCYE-- 371 (552)
T ss_pred HHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----------CChHHHHHHHHHHH--
Confidence 999988874 22 235678888887755 578999999988753 12456788998884
Q ss_pred hc-----CHHHHHHHHHHHHHhh
Q psy4339 188 ML-----EYHKAEKLYFRSIEIN 205 (303)
Q Consensus 188 ~g-----~~~~A~~~~~~al~~~ 205 (303)
.| +...|..+++++-+..
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc
Confidence 55 6889999999987654
No 263
>KOG2471|consensus
Probab=96.59 E-value=0.009 Score=51.49 Aligned_cols=111 Identities=12% Similarity=-0.025 Sum_probs=76.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHHHHhhcHHHHHHHHHHHHH-HHHHhcCCC-----
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQT--AKHYGNIGRLYQSMQKFDEAERMQLKAIA-IKEKVLGKD----- 169 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~----- 169 (303)
..++..|++.+|.+.+..+- +.+...+...|.. ...++|||.+++.+|.|.-+..+|.+|++ .+.+...+-
T Consensus 248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 44466666666666554321 1111112223333 34568999999999999999999999996 443331111
Q ss_pred ----chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh
Q psy4339 170 ----DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL 210 (303)
Q Consensus 170 ----~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 210 (303)
......+++|.|..|. ..|+.-.|.++|.++...+..+|.
T Consensus 327 ~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcH
Confidence 1123467899999998 999999999999999999986664
No 264
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.22 Score=37.95 Aligned_cols=131 Identities=16% Similarity=0.003 Sum_probs=87.1
Q ss_pred HHHHhhhh---HHHHHHHHHHHHHHHHHhhC-----------CC--cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 98 NELISVQF---YKEAELLHQNALVLSLKHFG-----------EN--NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 98 ~~~~~~~~---~~~A~~~~~~al~~~~~~~~-----------~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
..|+...+ ..+|-..|++++........ .+ ..--..+-..+|..+...|++++|+..++.++..
T Consensus 39 W~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~ 118 (207)
T COG2976 39 WRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ 118 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 44444443 34677777777765432100 01 0111123346788889999999999999998854
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHh
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRG 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~ 241 (303)
. .+......+-.+||.+.. .+|++|+|...+..... +...+.....
T Consensus 119 t-----~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~----------------------------~~w~~~~~el 164 (207)
T COG2976 119 T-----KDENLKALAALRLARVQL-QQKKADAALKTLDTIKE----------------------------ESWAAIVAEL 164 (207)
T ss_pred c-----hhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccc----------------------------ccHHHHHHHH
Confidence 2 233444556678999997 99999999988765321 1134445667
Q ss_pred HHHHHHhhhcHHHHHH-HHHHH
Q psy4339 242 LIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 242 la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.|+++..+|+.++|.. |.+++
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHH
Confidence 8999999999999999 66666
No 265
>KOG2053|consensus
Probab=96.46 E-value=0.31 Score=45.46 Aligned_cols=124 Identities=20% Similarity=0.112 Sum_probs=78.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++|.+|+....+.++. +|....+...-| -+..++|+.++|..++ +++... +++
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLka----------Lsl~r~gk~~ea~~~L-e~~~~~----~~~-- 75 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKA----------LSLFRLGKGDEALKLL-EALYGL----KGT-- 75 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHH----------HHHHHhcCchhHHHHH-hhhccC----CCC--
Confidence 568888888888877665 565555555556 4448999999999444 444431 122
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
...++..+-.||..++++++|..+|++++.-+ |. -..+..+=.+|. +.+.|.+=...--+..+..|+.|
T Consensus 76 -D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayv-R~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 76 -DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYV-REKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred -chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCccc
Confidence 34567788999999999999999999998653 33 233444445555 55655543333333333445433
No 266
>KOG2041|consensus
Probab=96.44 E-value=0.53 Score=43.00 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHH------HHHHHhh------------C--CcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 51 SGRFTESRRHAEKA------IQTFKNL------------L--PENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 51 ~g~~~~A~~~~~~a------l~~~~~~------------~--~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
-|+|++|++.|-.+ +++..+. . +.++.....+..++| ..+.....+++|.
T Consensus 747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig----------~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIG----------ETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 48888888877543 2222211 1 122333555666666 5556666777777
Q ss_pred HHHHH
Q psy4339 111 LLHQN 115 (303)
Q Consensus 111 ~~~~~ 115 (303)
++|..
T Consensus 817 ~yY~~ 821 (1189)
T KOG2041|consen 817 KYYSY 821 (1189)
T ss_pred HHHHh
Confidence 66655
No 267
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.42 E-value=0.0074 Score=31.41 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++.+|.++. ..|++++|+..+++.++..|
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHCc
Confidence 5789999997 99999999999999998877
No 268
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.41 E-value=0.3 Score=37.56 Aligned_cols=85 Identities=22% Similarity=0.190 Sum_probs=60.3
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy4339 141 LYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEY 220 (303)
Q Consensus 141 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~ 220 (303)
.+..+..-++|..-|.++- |....+.+.....||..|. ..+.++|+.++.+++++..
T Consensus 115 y~Wsr~~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~-------------- 171 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLE-------GTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSN-------------- 171 (203)
T ss_pred HHhhccCcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcC--------------
Confidence 3444444467776665542 2333455677889998884 7889999999999998877
Q ss_pred hHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 221 HYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 221 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+++.-.+.++..|+.++..+|++++|--
T Consensus 172 ---------~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 172 ---------PDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred ---------CCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 1212345668899999999999998853
No 269
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.34 E-value=0.23 Score=40.98 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=78.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
....+.+..+.|..+|.+|+.. ......+|...|.+-.. .++.+.|...|+.+++.+ +..+ ..
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~---~~ 72 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDP---DF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-H---HH
T ss_pred HHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCH---HH
Confidence 3336677788999999998741 22233567778888666 566666999999999876 2333 44
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHH
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMT 256 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (303)
+......+. ..|+.+.|..+|++++...+ . .. ....++......-...|+.+...
T Consensus 73 ~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~-------------------~---~~--~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 73 WLEYLDFLI-KLNDINNARALFERAISSLP-------------------K---EK--QSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHHHHHCCTSS-------------------C---HH--HCHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHHHHHH-HhCcHHHHHHHHHHHHHhcC-------------------c---hh--HHHHHHHHHHHHHHHcCCHHHHH
Confidence 455556676 89999999999999997655 1 00 02234555555556667766666
Q ss_pred HHHH
Q psy4339 257 EFTN 260 (303)
Q Consensus 257 ~~~~ 260 (303)
+..+
T Consensus 128 ~v~~ 131 (280)
T PF05843_consen 128 KVEK 131 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 270
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.30 E-value=0.12 Score=33.05 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.-|.-++..++.++|+..++++++.. .+.++...++..+..+|. ..|+|.+++.+..+=+.+..
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~-e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHM-EWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444567788899999999999865 456778888999999998 99999999999888887776
No 271
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=96.29 E-value=0.43 Score=38.22 Aligned_cols=106 Identities=10% Similarity=-0.012 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhhCCcch---hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPENH---LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA 132 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 132 (303)
+=...+...+.+....+-+.. ......+-..|..|.-++.....-....-.+.|.+.|++|+++....+.+.+|...
T Consensus 91 EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirL 170 (244)
T smart00101 91 ELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRL 170 (244)
T ss_pred HHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHH
Confidence 344455566666655443322 22344445556554433311100012223568999999999998877788889888
Q ss_pred HHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 133 ~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
....|.+.+|+. +++.++|..+.++|.+-
T Consensus 171 gLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 171 GLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888776 59999999888777654
No 272
>KOG1463|consensus
Probab=96.26 E-value=0.55 Score=39.03 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.+..++|..+ ...|+.++--+.....-..+... ..+..+.....+-. ......+..+.-+..+.
T Consensus 49 ~~Ilel~~ll----~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd---------~~~~~~~~~~~~i~l~~ 112 (411)
T KOG1463|consen 49 QSILELGDLL----AKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVD---------MFLKIDDGTGDQIELCT 112 (411)
T ss_pred HHHHHHHHHH----HhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH---------HHccCCCCcchHHHHHH
Confidence 5677888766 68999887776666655554432 11222222222211 11233455567777777
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
.+++...+. ...-.....-..+...|...++|.+|+......+.-.++. .+.+....++..-+.+|. ...+..+|
T Consensus 113 ~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~-~l~Nl~Ka 187 (411)
T KOG1463|consen 113 ECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYH-ALRNLPKA 187 (411)
T ss_pred HHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHH-HHhcchhH
Confidence 877776542 0111222344578999999999999999999888877775 455566667777788885 99999999
Q ss_pred HHHHHHHHHhhh
Q psy4339 195 EKLYFRSIEIND 206 (303)
Q Consensus 195 ~~~~~~al~~~~ 206 (303)
...+..|-....
T Consensus 188 kasLTsART~An 199 (411)
T KOG1463|consen 188 KASLTSARTTAN 199 (411)
T ss_pred HHHHHHHHHhhc
Confidence 988887765544
No 273
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.25 E-value=0.013 Score=30.43 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
++.++|.++...|++++|...|++.++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57899999999999999999999998754
No 274
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.24 E-value=1 Score=41.81 Aligned_cols=165 Identities=15% Similarity=0.030 Sum_probs=104.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..+.-|++++..|-.....+ .++....-|+ +-..-|+.+++-+++- .......-+.+...
T Consensus 5 ~ll~lAeey~~~A~~~~~~~---~~~~~l~~Y~-------------kLI~~ai~CL~~~~~~----~~l~p~~ea~~~l~ 64 (608)
T PF10345_consen 5 LLLSLAEEYLEKAHSLATKV---KSEEQLKQYY-------------KLIATAIKCLEAVLKQ----FKLSPRQEARVRLR 64 (608)
T ss_pred HHHHHHHHHHHHhHHHHHhc---CChhhHHHHH-------------HHHHHHHHHHHHHhcc----CCCCHHHHHHHHHH
Confidence 45666777777777665544 2222322222 2234566666655541 12222336777888
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+|.++. ....+++.|+.++.+++.+.++. .-......+..-++.++.+.+... |...++++++..+..
T Consensus 65 la~iL~---------~eT~n~~~Ae~~L~k~~~l~~~~--~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 65 LASILL---------EETENLDLAETYLEKAILLCERH--RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHH---------HHcCCHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 885542 47789999999999999987651 112223455667899999988887 999999999988662
Q ss_pred cCCCchHHHHHHHHH-HHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 166 LGKDDYEVGLSVGHL-ASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 166 ~~~~~~~~~~~~~~l-a~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+ +......+..+ ..... ..+++..|.+.++.......
T Consensus 133 -~--~~~w~~~frll~~~l~~-~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 133 -G--HSAWYYAFRLLKIQLAL-QHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred -C--chhHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHhh
Confidence 1 22222333333 33332 34799999999999988775
No 275
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.22 E-value=0.097 Score=43.19 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=84.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHH-HHhhhhHHHHHHHHHHHHHHHHHhhCCC
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNE-LISVQFYKEAELLHQNALVLSLKHFGEN 127 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~ 127 (303)
...+..+.|...|.+|.+. ......+|...| .. |...++.+.|..+|+.+++.+. .
T Consensus 12 ~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A----------~~E~~~~~d~~~A~~Ife~glk~f~-----~ 68 (280)
T PF05843_consen 12 RRTEGIEAARKVFKRARKD--------KRCTYHVYVAYA----------LMEYYCNKDPKRARKIFERGLKKFP-----S 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHH----------HHHHHTCS-HHHHHHHHHHHHHHHT-----T
T ss_pred HHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHH----------HHHHHhCCCHHHHHHHHHHHHHHCC-----C
Confidence 4566688899999988621 112234454455 33 2335677779999999998753 2
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
++ ..+......+...|+.+.|..+|++++... +.......+|......=. ..|+.+......+++.+..++
T Consensus 69 ~~---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~-~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DP---DFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFES-KYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -H---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHHTTT
T ss_pred CH---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhh
Confidence 33 345555678889999999999999998652 111213345666666665 889999999999999998885
Q ss_pred hh
Q psy4339 208 LK 209 (303)
Q Consensus 208 ~~ 209 (303)
.+
T Consensus 140 ~~ 141 (280)
T PF05843_consen 140 DN 141 (280)
T ss_dssp S-
T ss_pred hh
Confidence 43
No 276
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.15 E-value=0.021 Score=30.96 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++..||.+-...++|++|+.-|++++++.++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999887654
No 277
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=96.11 E-value=0.22 Score=34.70 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch-------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH----HH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY-------EVGLSVGHLASLYNYHMLEYHKAEKLYFRS----IE 203 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~g~~~~A~~~~~~a----l~ 203 (303)
+..+|......+++-.|+-+|++|+.+.++....+.. -...+..|||..++ .+|+.+-.+.|++-| +.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR-~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWR-SQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHH-HcCChHHHHHHHHHHHHHHHH
Confidence 4578888899999999999999999998876322211 12345789999998 999999999998754 45
Q ss_pred hhhhhh--hhhhhhhhhhhhHHHHhhhcccccc
Q psy4339 204 INDNLK--LFSASYSGLEYHYRDLKLFSASYSG 234 (303)
Q Consensus 204 ~~~~~~--~~~~~~~~l~~~~~a~~~~~~~~~~ 234 (303)
+.|+.| ........|++...|+-.+-+.||.
T Consensus 83 LiPQCp~~~C~afi~sLGCCk~ALl~F~KRHPN 115 (140)
T PF10952_consen 83 LIPQCPNTECEAFIDSLGCCKKALLDFMKRHPN 115 (140)
T ss_pred hccCCCCcchHHHHHhhhccHHHHHHHHHhCCC
Confidence 555555 3555577888888887666666665
No 278
>KOG0376|consensus
Probab=96.10 E-value=0.016 Score=49.83 Aligned_cols=88 Identities=17% Similarity=0.057 Sum_probs=76.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..-+.|+.|+..|.+|+++ +|..+..+.+.+ ..+...+++..|+.-+.+|++. .
T Consensus 15 l~~~~fd~avdlysKaI~l--------dpnca~~~anRa----------~a~lK~e~~~~Al~Da~kaie~--------d 68 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRA----------LAHLKVESFGGALHDALKAIEL--------D 68 (476)
T ss_pred cccchHHHHHHHHHHHHhc--------CCcceeeechhh----------hhheeechhhhHHHHHHhhhhc--------C
Confidence 4789999999999999998 666667777777 6668999999999999999995 5
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
|....+|..-|..+...+++.+|...|+....+.
T Consensus 69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 8888999999999999999999999999887664
No 279
>KOG0376|consensus
Probab=95.93 E-value=0.0074 Score=51.89 Aligned_cols=99 Identities=18% Similarity=0.065 Sum_probs=85.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
......+.|+.|+..|.+|+++ +|.-+..+.+-+..+...++|..|+.-+.+|++.. |....+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--------P~~~K~Y 75 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--------PTYIKAY 75 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--------chhhhee
Confidence 4557788999999999999996 45556677788899999999999999999999753 8888999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSA 213 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 213 (303)
...|.++. ..+++.+|...|+....+.|+.|.+..
T Consensus 76 ~rrg~a~m-~l~~~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 76 VRRGTAVM-ALGEFKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred eeccHHHH-hHHHHHHHHHHHHHhhhcCcCcHHHHH
Confidence 99999998 999999999999999999997765433
No 280
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.77 Score=37.35 Aligned_cols=172 Identities=9% Similarity=0.026 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhCC----CcH---HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 14 CSQLALKLKQVLFGS----ENL---QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 14 ~~~~al~~~~~~~~~----~~~---~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
-+++|+..++.+++. +.. +.-.+..+++..| ...|++..--+.....-+..... ..|....+...+
T Consensus 18 ~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~ly----v~~g~~~~l~~~i~~sre~m~~f---tk~k~~KiirtL 90 (421)
T COG5159 18 DIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLY----VSKGDYCSLGDTITSSREAMEDF---TKPKITKIIRTL 90 (421)
T ss_pred hHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHH----HhcCCcchHHHHHHhhHHHHHHh---cchhHHHHHHHH
Confidence 467788888887765 211 2335677888655 68999887666666665555443 223333333222
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
-. ..-.....++.-+..+...++...+. .........-..+...+...|+|.+|+....-.+.-.++.
T Consensus 91 ie---------kf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~- 158 (421)
T COG5159 91 IE---------KFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY- 158 (421)
T ss_pred HH---------hcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh-
Confidence 21 11144566777788888887765432 0111122334578889999999999999998888777775
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+.+.....+..-+.+|. ...+..++...+..|-..+.
T Consensus 159 -DDK~~Li~vhllESKvyh-~irnv~KskaSLTaArt~An 196 (421)
T COG5159 159 -DDKINLITVHLLESKVYH-EIRNVSKSKASLTAARTLAN 196 (421)
T ss_pred -cCccceeehhhhhHHHHH-HHHhhhhhhhHHHHHHHHhh
Confidence 566777777888889996 99999999888877765554
No 281
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.76 E-value=0.36 Score=39.04 Aligned_cols=92 Identities=11% Similarity=-0.082 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
.-...++.+.+|++.++.. ............+|..|...|++++|+++++.+...+++- +.......++..+..++
T Consensus 153 hs~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECA 228 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHH
Confidence 4446688888888888764 2233445666799999999999999999999998777653 34455667788889999
Q ss_pred HHhhcCHHHHHHHHHHH
Q psy4339 185 NYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 185 ~~~~g~~~~A~~~~~~a 201 (303)
. ..|+.++.+.+.-+.
T Consensus 229 ~-~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 229 K-RLGDVEDYLTTSLEL 244 (247)
T ss_pred H-HhCCHHHHHHHHHHH
Confidence 6 999988877765443
No 282
>KOG4814|consensus
Probab=95.61 E-value=0.31 Score=43.89 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=72.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
....+..+|..|+++|..++...... ..+...+....+++.||..+.+.|+|.+++++|-+.. |......
T Consensus 362 ~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d--------~~~~l~q 431 (872)
T KOG4814|consen 362 KKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD--------RQSPLCQ 431 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--------cccHHHH
Confidence 55588899999999999999875321 2234557788899999999999999999999997653 2223333
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+-.+.. ..|+-++|..+......+..
T Consensus 432 ~~~~~~~~-~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 432 LLMLQSFL-AEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHH-HhcchHHHHHHHHHHHhhhc
Confidence 44445554 67889999998887776554
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.57 E-value=1.2 Score=37.91 Aligned_cols=104 Identities=10% Similarity=-0.007 Sum_probs=74.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-HHHHh-----------
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA-IKEKV----------- 165 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~----------- 165 (303)
...+..|+++.|...+.++...... .......+...-+.+....|+..+|+..++..+. .....
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKS 229 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhh
Confidence 6668999999999999887775321 1111334556779999999999999999988887 22221
Q ss_pred --------------cCCCchHHHHHHHHHHHHHHHhh------cCHHHHHHHHHHHHHhhh
Q psy4339 166 --------------LGKDDYEVGLSVGHLASLYNYHM------LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 166 --------------~~~~~~~~~~~~~~la~~~~~~~------g~~~~A~~~~~~al~~~~ 206 (303)
........+.++..+|.... .. +..+++...|+++.++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 230 GLLESLEVISSTNLDKESKELKAKAFLLLAKWLD-ELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHHHhCh
Confidence 01112345667777888776 77 888889999999988877
No 284
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.55 E-value=0.03 Score=28.23 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
.++.++|.++..++++++|..++++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35789999999999999999999999865
No 285
>KOG1308|consensus
Probab=95.53 E-value=0.0019 Score=53.03 Aligned_cols=89 Identities=16% Similarity=0.075 Sum_probs=76.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|.++.|++.|..++.+ +|..+..+..-|.++..+++...|++-+..|+.+- |+.+..+-..
T Consensus 125 ln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--------~Dsa~~ykfr 188 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--------PDSAKGYKFR 188 (377)
T ss_pred hcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccC--------cccccccchh
Confidence 6688899999999998885 56677889999999999999999999999998763 6666677778
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|.+.+ .+|++++|...+..+.++.-
T Consensus 189 g~A~r-llg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 189 GYAER-LLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred hHHHH-HhhchHHHHHHHHHHHhccc
Confidence 88888 89999999999999987654
No 286
>KOG2041|consensus
Probab=95.48 E-value=0.93 Score=41.50 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred HHHHHHhhcHHHHHHHHHHH------HHHHHHh------------c--CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 139 GRLYQSMQKFDEAERMQLKA------IAIKEKV------------L--GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 139 a~~~~~~~~~~~A~~~~~~a------l~~~~~~------------~--~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
|.+-.--|+|++|++.|-.+ +++..+. . +.++...-.++.++|..+. .+..+++|.++|
T Consensus 741 aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa-~~~~We~A~~yY 819 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFA-EMMEWEEAAKYY 819 (1189)
T ss_pred HhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33444457777777777432 3332221 1 2334455678999999996 999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 199 FRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 199 ~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.++-.. .....+++.++.+.... .+...-|+....+-.+|.++...|--++|.+
T Consensus 820 ~~~~~~----e~~~ecly~le~f~~LE-~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 820 SYCGDT----ENQIECLYRLELFGELE-VLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred Hhccch----HhHHHHHHHHHhhhhHH-HHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 886533 34556666665443221 1111222222234455666666666555555
No 287
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.48 E-value=0.029 Score=28.33 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.++. ..|++++|+.++++++++.+
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCC
Confidence 35788999997 99999999999999998765
No 288
>KOG4507|consensus
Probab=95.47 E-value=0.04 Score=48.81 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=83.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
..+|+...|..++..|+-.. +........+||.+...-|-...|-.++.+++.+.. ..| ..++.+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep---l~~~~~ 682 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-----SEP---LTFLSL 682 (886)
T ss_pred eecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc---hHHHhc
Confidence 67899999999999998752 222234567999999999999999999999998851 123 356789
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEY 220 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~ 220 (303)
|.+|. .+.+.+.|++.+++|++..+++|.+-..+.-+.+
T Consensus 683 g~~~l-~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYL-ALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred chhHH-HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99998 9999999999999999999988866655554443
No 289
>KOG2053|consensus
Probab=95.44 E-value=0.16 Score=47.28 Aligned_cols=90 Identities=16% Similarity=0.033 Sum_probs=68.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...+++.+|+.-..+.++- +|....+...-|.++.++|+.++|..+++.. ... +++ .-.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~----~~~---D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YGL----KGT---DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-ccC----CCC---chHHHHHH
Confidence 3578888888888887763 5555666667889999999999999666533 221 222 23456778
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
-.+|. .+|++++|..+|++++...|.
T Consensus 84 ~~~y~-d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 84 QNVYR-DLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHH-HHhhhhHHHHHHHHHHhhCCc
Confidence 88999 999999999999999998884
No 290
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.30 E-value=0.058 Score=29.24 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP 73 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~ 73 (303)
+++..||.+- ...++|++|+.-|++++++.++.+.
T Consensus 2 dv~~~Lgeis----le~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEIS----LENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHhcC
Confidence 5678888877 6899999999999999999887643
No 291
>KOG0508|consensus
Probab=95.19 E-value=0.11 Score=44.88 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhC----Ccc--hhhhHHHHHHHHHHHHHHhhhhHHHHhhh
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLL----PEN--HLLLTSAHRVKALILEEIALDSNELISVQ 104 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~--~~~~~~~~~~la~~~~~~~~~~~~~~~~~ 104 (303)
....+++.-+|..+- ....+.-.|+.++.++++...... ... .|..+.-+.... ..-....
T Consensus 242 ~~riealEllGat~~---dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~----------~~~~elE 308 (615)
T KOG0508|consen 242 ESRIEALELLGATYV---DKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREV----------NNREELE 308 (615)
T ss_pred hhHHHHHHHhccccc---chhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhc----------CCHHHHH
Confidence 344677778885553 345567789999999998865511 111 111111111111 0000000
Q ss_pred hH-HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q psy4339 105 FY-KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL 183 (303)
Q Consensus 105 ~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 183 (303)
.+ ..--++--+++-+.+.++|+.+|++.......|-+|..+|+++..++++.-|+++.++.+.+-+|.+...+...+.+
T Consensus 309 ~lv~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFael 388 (615)
T KOG0508|consen 309 ELVEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAEL 388 (615)
T ss_pred HHhcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH
Confidence 01 11112334566777788999999987777778999999999999999999999999998888889999888888888
Q ss_pred HHHhhcC
Q psy4339 184 YNYHMLE 190 (303)
Q Consensus 184 ~~~~~g~ 190 (303)
+.|.+.+
T Consensus 389 FS~mL~d 395 (615)
T KOG0508|consen 389 FSFMLQD 395 (615)
T ss_pred HHHHhhh
Confidence 7654443
No 292
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.11 E-value=0.1 Score=30.69 Aligned_cols=34 Identities=24% Similarity=0.126 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
..++.+|..+. ++|+|++|..+.+.++++.|+++
T Consensus 2 d~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcH
Confidence 35788999995 99999999999999999998443
No 293
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.87 E-value=0.81 Score=31.51 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=58.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
+..|++-+|++..+..+..-.. +......+..-|.++...+ ....+.+-=..++.-+++.+.+.. .-+
T Consensus 7 ~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA------~~ten~d~k~~yLl~sve~~s~a~-~Ls 74 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLA------KKTENPDVKFRYLLGSVECFSRAV-ELS 74 (111)
T ss_pred HHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHH------HhccCchHHHHHHHHhHHHHHHHh-ccC
Confidence 4899999999999998876322 2222244555555543333 344455544555555555544432 124
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
|.-+..++.+|.-+....-|+++..-.++++.+
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 555666777776666666666666666666543
No 294
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.86 E-value=2.2 Score=36.45 Aligned_cols=146 Identities=15% Similarity=0.050 Sum_probs=86.1
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh
Q psy4339 26 FGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF 105 (303)
Q Consensus 26 ~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~ 105 (303)
+..|.+.....+..-+ .+ ..|+++.|.+-|+..+. +|++ ..+...|+. ..-.+.|.
T Consensus 114 lssDqepLIhlLeAQa-al-----~eG~~~~Ar~kfeAMl~---------dPEt-RllGLRgLy--------leAqr~Ga 169 (531)
T COG3898 114 LSSDQEPLIHLLEAQA-AL-----LEGDYEDARKKFEAMLD---------DPET-RLLGLRGLY--------LEAQRLGA 169 (531)
T ss_pred hhccchHHHHHHHHHH-HH-----hcCchHHHHHHHHHHhc---------ChHH-HHHhHHHHH--------HHHHhccc
Confidence 4456666666666555 23 58999999999886543 3332 111222211 22267899
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHH
Q psy4339 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE--VGLSVGHLASL 183 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~ 183 (303)
.+.|..|.+.+-... |....+....-...+..|+++.|+++.+...... ..+++-.+ .+..+...+..
T Consensus 170 reaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 170 REAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHH
Confidence 999999999888753 2233333344455677899999999998765532 12222222 12223333333
Q ss_pred HHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 184 YNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 184 ~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.. .-+...|...-.+++++.++
T Consensus 240 ~l--dadp~~Ar~~A~~a~KL~pd 261 (531)
T COG3898 240 LL--DADPASARDDALEANKLAPD 261 (531)
T ss_pred Hh--cCChHHHHHHHHHHhhcCCc
Confidence 32 34567778888888877773
No 295
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.85 E-value=1.9 Score=35.68 Aligned_cols=154 Identities=19% Similarity=-0.015 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+..+++.+........+ .....++.++..-.....+..+|..+|+.+.+. .......++|.++..-.
T Consensus 57 ~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 57 YAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGR 123 (292)
T ss_pred HHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCC
Confidence 34444444443322222 566677755531112344577888888844332 23456667885542100
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHHHHHHhcC
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-------KFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~ 167 (303)
....+..+|..+|++|.+. .++.-..+...+|.+|..-. +...|...|.++....
T Consensus 124 ------gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----- 185 (292)
T COG0790 124 ------GVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----- 185 (292)
T ss_pred ------CcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-----
Confidence 1144889999999999884 22221344667888877642 2236777777766532
Q ss_pred CCchHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHh
Q psy4339 168 KDDYEVGLSVGHLASLYNYH---MLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~---~g~~~~A~~~~~~al~~ 204 (303)
...+...+|.+|... ..++.+|..+|.++-+.
T Consensus 186 -----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 186 -----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred -----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 345678899888522 23789999999998754
No 296
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.78 E-value=0.63 Score=29.79 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
...-|--+| .+.+.++|+..+.++++... +.++...++..+. .+|...|+|.+++.+...=
T Consensus 9 ~ie~GlkLY----~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~----------qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 9 QIEKGLKLY----HQNETQQALQKWRKALEKIT-----DREDRFRVLGYLI----------QAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHh----ccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 334444454 78889999999999998732 3444444444444 8889999999999999988
Q ss_pred HHHHHHh
Q psy4339 117 LVLSLKH 123 (303)
Q Consensus 117 l~~~~~~ 123 (303)
+++.++.
T Consensus 70 ~~~A~el 76 (80)
T PF10579_consen 70 LEIAEEL 76 (80)
T ss_pred HHHHHHc
Confidence 8887765
No 297
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.73 E-value=0.59 Score=32.18 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=56.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ----KFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
..+...|++-+|+++.++.+....+ +. .....+..-|.++..+. +.+-=..++.-+++-+.+.. .-.|..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~----~~-~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp~~ 77 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGE----DE-SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSPDS 77 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccC----CC-chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccChhH
Confidence 4457899999999999999886432 22 11133445566665543 33333333333443333321 123556
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+..++.+|.-+. ...-|+++..-.++++.+
T Consensus 78 A~~L~~la~~l~-s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLG-SVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHHHhcc
Confidence 777777776664 444556666666666554
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.73 E-value=0.24 Score=38.08 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhh
Q psy4339 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDS 97 (303)
Q Consensus 18 al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 97 (303)
|+..+-+.-+....+.++....|| .|| ...+-++|+.++.+++++... ++.....++..|+
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLA-tyY----~krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLa---------- 185 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALA-TYY----TKRDPEKTIQLLLRALELSNP----DDNFNPEILKSLA---------- 185 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHH-HHH----HccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHH----------
Confidence 445555444545556788999999 676 688999999999999998543 2222346666677
Q ss_pred HHHHhhhhHHHHHHH
Q psy4339 98 NELISVQFYKEAELL 112 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~ 112 (303)
.+|..+|+++.|--+
T Consensus 186 s~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 186 SIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHHhcchhhhhhh
Confidence 777999999988543
No 299
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.52 Score=38.45 Aligned_cols=116 Identities=13% Similarity=-0.037 Sum_probs=79.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYS 216 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (303)
.-+.-....|++.+|...+..++... |....+...++.+|. ..|+.+.|...+...=.-..+....+ ...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a 208 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHG-LQA 208 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHH-HHH
Confidence 44556678899999999999999875 444667789999998 99999999888765211111111111 222
Q ss_pred hhhhhHHH--------HhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 217 GLEYHYRD--------LKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 217 ~l~~~~~a--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.++.+.++ +..--..+|+...+.+.+|..+...|+.++|.+ ++..+
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23333332 222223467777889999999999999999999 54444
No 300
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.46 E-value=0.29 Score=47.04 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=76.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
+++...+.|+.|+..|++.-..+ |....--.+.+.+|.....+-.-..--+.+.+|+...++..+ .|...--|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 555 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEY 555 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHH
Confidence 56677778888888888766643 122233456777787776654444444677777777777643 34444456
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSAS 214 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 214 (303)
...|.+|. .+|+++|-++++.-|++-.++||.+...
T Consensus 556 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 556 LGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 77888898 9999999999999999999998854433
No 301
>KOG2114|consensus
Probab=94.40 E-value=3.8 Score=38.48 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQT 67 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~ 67 (303)
..+|.-|+.+.+.. +.+......++...|.-+ +..|+|++|...|-+++..
T Consensus 347 K~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~L----y~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 347 KNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYL----YGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHccc
Confidence 35677888887764 334445678888888766 4999999999999998865
No 302
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.34 E-value=3 Score=35.78 Aligned_cols=175 Identities=11% Similarity=-0.049 Sum_probs=108.2
Q ss_pred hHhHHHHHHHHHHHHHH-----HHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcc------
Q psy4339 7 LLKNLSLCSQLALKLKQ-----VLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN------ 75 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~-----~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 75 (303)
.+.++...|..++.... .++ ..+|-.+.++..++.++ ..+|++..|.++.++|+-.++....+.
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll-~~~PyHidtLlqls~v~----~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLL-QKNPYHIDTLLQLSEVY----RQQGDHAQANDLLERALFAFERAFHPSFSPFRS 83 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHH-HHCCCcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34455555555554321 122 34677788999999888 799999999999999998776431110
Q ss_pred ------------hhh---hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy4339 76 ------------HLL---LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGR 140 (303)
Q Consensus 76 ------------~~~---~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 140 (303)
.+. .-.++.... ....+.|.+..|.++.+-.+.+-. .++| ..+...+=.
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i----------~~L~~RG~~rTAlE~~KlLlsLdp----~~DP--~g~ll~ID~ 147 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYI----------QSLGRRGCWRTALEWCKLLLSLDP----DEDP--LGVLLFIDY 147 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHH----------HHHHhcCcHHHHHHHHHHHHhcCC----CCCc--chhHHHHHH
Confidence 111 111111111 455789999999999988888621 1133 334445555
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH---------------HHHHHHHHHHHHhh
Q psy4339 141 LYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY---------------HKAEKLYFRSIEIN 205 (303)
Q Consensus 141 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~---------------~~A~~~~~~al~~~ 205 (303)
...+.++|+-=++.++.......+ ..........+.++.++. ..++- ++|...+.+|+...
T Consensus 148 ~ALrs~~y~~Li~~~~~~~~~~~~---~~~~~lPn~a~S~aLA~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 148 YALRSRQYQWLIDFSESPLAKCYR---NWLSLLPNFAFSIALAYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHhcCCHHHHHHHHHhHhhhhhh---hhhhhCccHHHHHHHHHH-HhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 566677777666666654432110 000011234567777885 78877 89999999999988
Q ss_pred h
Q psy4339 206 D 206 (303)
Q Consensus 206 ~ 206 (303)
|
T Consensus 224 P 224 (360)
T PF04910_consen 224 P 224 (360)
T ss_pred H
Confidence 8
No 303
>KOG1550|consensus
Probab=94.27 E-value=2.3 Score=38.94 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=91.0
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG-RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
-++.|..+|+.+.+-+++..... ...+...+|.+|+.-..... ++..|+.+|.++-+. ++ ..+...
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~ 330 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYL 330 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHH
Confidence 35667777777766433222111 23367788877741000122 678889888887665 22 356667
Q ss_pred HHHHHHHHhhhhHHHHhh---hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHH
Q psy4339 86 KALILEEIALDSNELISV---QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERMQLKA 158 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 158 (303)
+|.++ ... .++..|.++|..|... . ...++.++|.||.. ..+..+|..++.++
T Consensus 331 lg~~~----------~~g~~~~d~~~A~~yy~~Aa~~-------G---~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 331 LGVLY----------ETGTKERDYRRAFEYYSLAAKA-------G---HILAIYRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred HHHHH----------HcCCccccHHHHHHHHHHHHHc-------C---ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 77443 322 3577899999888773 2 24467788888865 45788999999998
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
.+.- ++ .+...++..+.+..++++.+...+...-
T Consensus 391 A~~g-------~~---~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 391 AEKG-------NP---SAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHcc-------Ch---hhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 7642 12 2344455554433356665555554433
No 304
>KOG1308|consensus
Probab=94.23 E-value=0.01 Score=48.85 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=74.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..|.+++|++.|..++.+ +|..+..+...+ .++...++...|+.-+..++.+ ++
T Consensus 126 n~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~----------sv~lkl~kp~~airD~d~A~ei--------n~ 179 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--------NPPLAILYAKRA----------SVFLKLKKPNAAIRDCDFAIEI--------NP 179 (377)
T ss_pred cCcchhhhhccccccccc--------CCchhhhccccc----------ceeeeccCCchhhhhhhhhhcc--------Cc
Confidence 789999999999999887 677788888888 8889999999999999999996 45
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.+.-|-.-|.....+|+|++|-..+..+.++.
T Consensus 180 Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 180 DSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 556666677888888999999999999998763
No 305
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.22 E-value=2.7 Score=34.77 Aligned_cols=119 Identities=18% Similarity=0.084 Sum_probs=75.8
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..+++..|...+..+-.. ..+ .....++.++. .......+..+|..+|+.+.+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~------~g~gv~~~~~~A~~~~~~~a~~---------- 106 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYG------AGKGVSRDKTKAADWYRCAAAD---------- 106 (292)
T ss_pred ccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHH------hccCccccHHHHHHHHHHHhhc----------
Confidence 677888888888876552 111 45555664443 2224455688899999854441
Q ss_pred HHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC--------HHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE--------YHKAEKL 197 (303)
Q Consensus 130 ~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~--------~~~A~~~ 197 (303)
....+..+||.+|.. ..+..+|..+|++|.+.- + +.-..+...+|..|. .|. ...|...
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g------~-~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~ 177 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG------N-VEAALAMYRLGLAYL--SGLQALAVAYDDKKALYL 177 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC------C-hhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHH
Confidence 234466789999887 558999999999998642 1 221445778888884 442 2356666
Q ss_pred HHHHHH
Q psy4339 198 YFRSIE 203 (303)
Q Consensus 198 ~~~al~ 203 (303)
|.++-.
T Consensus 178 ~~~aa~ 183 (292)
T COG0790 178 YRKAAE 183 (292)
T ss_pred HHHHHH
Confidence 666554
No 306
>KOG3364|consensus
Probab=93.93 E-value=0.64 Score=33.22 Aligned_cols=76 Identities=13% Similarity=0.006 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 132 AKHYGNIGRLYQSMQK---FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
..+.+++|+++....+ ..+.+.+++..++ . ..+.......+.||..+ |+.|+|++|+.+.+..++..|++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~-----~~~~~rRe~lyYLAvg~-yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S-----AHPERRRECLYYLAVGH-YRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h-----cCcccchhhhhhhHHHH-HHHhhHHHHHHHHHHHHhhCCCc
Confidence 4567889999887544 4456666665554 1 23334566788999999 49999999999999999998866
Q ss_pred hhhhhh
Q psy4339 209 KLFSAS 214 (303)
Q Consensus 209 ~~~~~~ 214 (303)
++....
T Consensus 105 ~Qa~~L 110 (149)
T KOG3364|consen 105 RQALEL 110 (149)
T ss_pred HHHHHH
Confidence 654433
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.76 E-value=0.79 Score=26.97 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.++.+|..+.++|+|++|..+.+.++++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 56789999999999999999999999875
No 308
>KOG2581|consensus
Probab=93.65 E-value=4.2 Score=34.94 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh--hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL--LTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..++..+-..++. ..++++.+|..+-...+.-... ......+ .+.++..+. .+|...|+...-..
T Consensus 124 i~aY~~lLv~Lfl--~d~K~~kea~~~~~~~l~~i~~-~nrRtlD~i~ak~~fy~~----------l~~E~~~~l~~~rs 190 (493)
T KOG2581|consen 124 IEAYLYLLVLLFL--IDQKEYKEADKISDALLASISI-QNRRTLDLIAAKLYFYLY----------LSYELEGRLADIRS 190 (493)
T ss_pred HHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHH----------HHHHhhcchHHHHH
Confidence 3444444334432 4678999998887776544221 1111111 334444444 44466666555555
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.+..-+... .++.+....+...+.|=.+|...+.|+.|.....++.-- + ...+.+.+.-++.+|.+.. -+++|
T Consensus 191 ~l~~~lrtA--tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~p-e---~~snne~ARY~yY~GrIka-iqldY 263 (493)
T KOG2581|consen 191 FLHALLRTA--TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYP-E---AASNNEWARYLYYLGRIKA-IQLDY 263 (493)
T ss_pred HHHHHHHHh--hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCc-c---ccccHHHHHHHHHHhhHHH-hhcch
Confidence 554444432 234455556667777888999999999999887765311 0 0122366778889999998 99999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q psy4339 192 HKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~ 209 (303)
..|.+++-+|+...|++.
T Consensus 264 ssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 264 SSALEYFLQALRKAPQHA 281 (493)
T ss_pred hHHHHHHHHHHHhCcchh
Confidence 999999999999999644
No 309
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=3.6 Score=33.77 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=64.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH-------------
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN------------- 115 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~------------- 115 (303)
...|++.+|...+..++... |....+...++ .+|...|+.+.|...+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la----------~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l 206 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA--------PENSEAKLLLA----------ECLLAAGDVEAAQAILAALPLQAQDKAAHGL 206 (304)
T ss_pred hhccchhhHHHHHHHHHHhC--------cccchHHHHHH----------HHHHHcCChHHHHHHHHhCcccchhhHHHHH
Confidence 37899999999999988873 33345555566 555777777666655543
Q ss_pred --HHHHHHHhhC-----------CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 116 --ALVLSLKHFG-----------ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 116 --al~~~~~~~~-----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
-+++..+... ..+|+...+-..+|..+...|+.++|.+.+-..+..
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2333332211 124555677789999999999999999998766554
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.36 E-value=1.5 Score=32.56 Aligned_cols=70 Identities=11% Similarity=-0.107 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+......+..+..+-...++.+++...+.-.-.+. |.....-..-|.++. ..|++.+|+..++.+..-.+
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAP 75 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCC
Confidence 34556677788888888899999998886543332 555666778899998 99999999999999765544
No 311
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=93.20 E-value=5.1 Score=34.79 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=49.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.++.-.|+|..|++.++..---.+.......+-...+++.+|-+|..+++|.+|++.|..++-...+
T Consensus 130 Rvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999887642211111222334556678899999999999999999999998876544
No 312
>PRK10941 hypothetical protein; Provisional
Probab=93.14 E-value=0.83 Score=37.33 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL 210 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 210 (303)
......++-.+|...++++.|+.+.+..+.+. +++| .-+...|.+|. .+|.+..|..-++.-++.+|+.|.
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~dp---~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFD-----PEDP---YEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchh
Confidence 45678899999999999999999999998875 4444 44577999997 999999999999999999885443
No 313
>KOG2561|consensus
Probab=93.06 E-value=2.5 Score=36.57 Aligned_cols=119 Identities=17% Similarity=-0.006 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh---HHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF---YKEAELL 112 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~---~~~A~~~ 112 (303)
.++..|.+. .....|++|+.++-.|-+.+-. .++.+...--|.+.+-..|. ++|+...+ .++|..-
T Consensus 165 g~hekaRa~----m~re~y~eAl~~LleADe~F~~----Cd~klLe~VDNyallnLDIV---WCYfrLknitcL~DAe~R 233 (568)
T KOG2561|consen 165 GLHEKARAA----MEREMYSEALLVLLEADESFSL----CDSKLLELVDNYALLNLDIV---WCYFRLKNITCLPDAEVR 233 (568)
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHh----hhHHHHHhhcchhhhhcchh---heehhhcccccCChHHHH
Confidence 444555555 5778899999888888776543 35555555555555444444 55555553 4566666
Q ss_pred HHHHHHHHHHhhC-----------CCcHHH---HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 113 HQNALVLSLKHFG-----------ENNVQT---AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 113 ~~~al~~~~~~~~-----------~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+..|-+-+...+| +..|.. ...+..-|.+.+.+|+-++|.++++.+.......
T Consensus 234 L~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 234 LVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred HHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 6666655555433 344543 3445667999999999999999999998766553
No 314
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.05 E-value=2.9 Score=36.08 Aligned_cols=100 Identities=15% Similarity=0.041 Sum_probs=74.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCC---cH---H----HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGEN---NV---Q----TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~---~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
..++++++|..|.--|+.+++++.+-.... .+ + ...+-..|..||..+++.+-|+.+-.+++.+
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l------ 257 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL------ 257 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc------
Confidence 566789999999999999999886531111 11 1 1234457899999999999999999888764
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+|.....+...|.+++ .+.+|.+|-..+--+.-++-
T Consensus 258 --nP~~frnHLrqAavfR-~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 258 --NPSYFRNHLRQAAVFR-RLERYSEAARSAMIADYMYW 293 (569)
T ss_pred --CcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3666677788899998 99999999877665554443
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.01 E-value=0.17 Score=24.70 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
+..++|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998875
No 316
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.93 E-value=5.7 Score=34.40 Aligned_cols=104 Identities=10% Similarity=0.066 Sum_probs=74.1
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcch---hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCC
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENH---LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGE 126 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 126 (303)
.+++|..|..-|..+++++.+...... +....+...-+++-..+. .+|...++.+-|+..-.+++.+
T Consensus 188 rqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv---~CYL~~rkpdlALnh~hrsI~l------- 257 (569)
T PF15015_consen 188 RQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLV---TCYLRMRKPDLALNHSHRSINL------- 257 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHH---HhhhhcCCCchHHHHHhhhhhc-------
Confidence 899999999999999999876422222 222222222222322333 7889999999999999998885
Q ss_pred CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 127 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+|....-+..-|.|+..+.+|.+|-+.+.-+.-++.-
T Consensus 258 -nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl 294 (569)
T PF15015_consen 258 -NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWL 294 (569)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555667899999999999999988777666543
No 317
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.89 E-value=5.5 Score=34.15 Aligned_cols=177 Identities=11% Similarity=-0.044 Sum_probs=104.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|..+.|..|-+++-... |....+....= ...+..|+++.|++.......... .+++-
T Consensus 165 qr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtL----------e~r~~~gdWd~AlkLvd~~~~~~v--ie~~~ 224 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA--------PQLPWAARATL----------EARCAAGDWDGALKLVDAQRAAKV--IEKDV 224 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc--------cCCchHHHHHH----------HHHHhcCChHHHHHHHHHHHHHHh--hchhh
Confidence 47899999999999887763 22222111111 444789999999999988776432 12222
Q ss_pred HHHH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTA--KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.... ..+..-+..... -+...|...-.++.++. |+..-.-..-+..+. ..|+..++-.+++.+-+..|
T Consensus 225 aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~--------pdlvPaav~AAralf-~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 225 AERSRAVLLTAKAMSLLD-ADPASARDDALEANKLA--------PDLVPAAVVAARALF-RDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcC--------CccchHHHHHHHHHH-hccchhhhhhHHHHHHhcCC
Confidence 2222 222222222222 34566777777777654 444444455677885 99999999999998887655
Q ss_pred hhhhhhhhhhhhh-------hhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 207 NLKLFSASYSGLE-------YHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 207 ~~~~~~~~~~~l~-------~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
||.++..|-... .+.++. .+..-.|+...+....+..-..-|++..|..
T Consensus 295 -HP~ia~lY~~ar~gdta~dRlkRa~-~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 295 -HPDIALLYVRARSGDTALDRLKRAK-KLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred -ChHHHHHHHHhcCCCcHHHHHHHHH-HHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 888888886552 222221 1122233344445556666666666655544
No 318
>KOG0686|consensus
Probab=92.85 E-value=5.7 Score=34.18 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
+..++..+| .-|..-|+++.|++.|-++.+.+. ....++..+.|+-.+-..+|+|..-..+-.+|
T Consensus 149 iRra~~Dl~----------dhy~~cG~l~~Alr~YsR~RdYCT-----s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 149 IRRALEDLG----------DHYLDCGQLDNALRCYSRARDYCT-----SAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHH----------HHHHHhccHHHHHhhhhhhhhhhc-----chHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 445666777 777999999999999999888764 34567888889999999999999888888888
Q ss_pred HHHH---HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 159 IAIK---EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 159 l~~~---~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
...- +.. ...-|....+. -|.+.. .+++|..|..++-.+.
T Consensus 214 ~st~~~~~~~-~q~v~~kl~C~--agLa~L-~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 214 ESTPDANENL-AQEVPAKLKCA--AGLANL-LLKKYKSAAKYFLLAE 256 (466)
T ss_pred HhCchhhhhH-HHhcCcchHHH--HHHHHH-HHHHHHHHHHHHHhCC
Confidence 6652 110 01112223344 444444 5679999988886654
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.61 E-value=0.18 Score=24.62 Aligned_cols=24 Identities=25% Similarity=0.073 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
+...+|.++. .+|++++|...+++
T Consensus 3 a~~~la~~~~-~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALL-AQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHhC
Confidence 5678999997 99999999988763
No 320
>KOG0686|consensus
Probab=92.58 E-value=6.2 Score=33.95 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.+-.++..+|..|..-|+++.|+++|-++-+.+.. ...++..+.++-.+-. -.|+|..-..+-.+|...
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI-~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSI-YMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHH-hhcchhhhhhHHHHHHhC
Confidence 34568899999999999999999999998777633 3567778888888887 689998888888887765
No 321
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.37 E-value=5.2 Score=32.62 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcHH-HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFD-EAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 136 ~~la~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
.+++.+....+.-+ +-.++.++|++-. + .+.........+..+|..+. +.|++.+|..++-
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLW-KEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHH-hhccHHHHHHHHH
Confidence 45555555443322 3445566666655 2 33444455677889999997 9999999998874
No 322
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.35 E-value=4.9 Score=32.23 Aligned_cols=59 Identities=14% Similarity=-0.034 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 148 FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 148 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++|...|++|+++.+...++.+|.......|.+..|..-.|+.++|+...++|+....
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 47899999999999999888999998888888888773258999999999999987665
No 323
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.09 E-value=0.3 Score=42.15 Aligned_cols=71 Identities=8% Similarity=-0.023 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKE-KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+...|..+++-+|+|..|++.++.. ++.+ ..+..-.+-...+++.+|-+|. .+++|.+|+..|..++....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFayl-MlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYL-MLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999988653 2221 1222334556778999999998 99999999999999987555
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.08 E-value=0.98 Score=30.03 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+|....+...+|..+...|++++|++.+.+++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4556678899999999999999999999877654
No 325
>KOG0985|consensus
Probab=92.04 E-value=13 Score=36.30 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHH--HHH---------------hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAI--KEK---------------VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKL 197 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~--~~~---------------~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~ 197 (303)
+..||..+..+|+|.-|...-++|-.+ ++. ..|-+-.-.+.-+-.+...|. ..|-+++-+.+
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq-~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ-DRGYFEELISL 1301 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH-hcCcHHHHHHH
Confidence 456778888888998888888776432 211 122221112333556777787 88888888888
Q ss_pred HHHHHHhhhhh
Q psy4339 198 YFRSIEINDNL 208 (303)
Q Consensus 198 ~~~al~~~~~~ 208 (303)
++.++-+-..|
T Consensus 1302 ~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1302 LEAGLGLERAH 1312 (1666)
T ss_pred HHhhhchhHHH
Confidence 88888766643
No 326
>KOG4507|consensus
Probab=91.98 E-value=1.7 Score=39.15 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=66.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
+.+|+..+|..++..++..... + ..-.++..+|.++.+.|...+|--.+..|+. +.+.+...++.+
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~-----h-~kdi~lLSlaTiL~RaG~sadA~iILhAA~~--------dA~~~t~n~y~l 289 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSR-----H-NKDIALLSLATVLHRAGFSADAAVILHAALD--------DADFFTSNYYTL 289 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCc-----c-cccchhhhHHHHHHHcccccchhheeehhcc--------CCccccccceeH
Confidence 6778999999999988886432 1 1223566889999999998888877766553 224444447788
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|.++. ..|.+.....+|..+.+..|
T Consensus 290 ~~i~a-ml~~~N~S~~~ydha~k~~p 314 (886)
T KOG4507|consen 290 GNIYA-MLGEYNHSVLCYDHALQARP 314 (886)
T ss_pred HHHHH-HHhhhhhhhhhhhhhhccCc
Confidence 88887 88888888888888777666
No 327
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.92 E-value=7 Score=33.04 Aligned_cols=130 Identities=8% Similarity=-0.080 Sum_probs=81.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
...+.-..+|++|++- .++++.....+...|. ...+-++..+-+++++.. .++++.+...|..
T Consensus 45 a~~E~klsilerAL~~-----np~~~~L~l~~l~~~~-------~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 45 ALAERKLSILERALKH-----NPDSERLLLGYLEEGE-------KVWDSEKLAKKWEELLFK-----NPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHH
Confidence 3345555666666655 3455555555555553 445666667777776665 1334444333322
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCC----------cHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGEN----------NVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
.- ......-.++.....|.+++.......... ......++.++.......|..+.|+..+
T Consensus 108 ~~----------q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~ 177 (321)
T PF08424_consen 108 FR----------QSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALW 177 (321)
T ss_pred HH----------HHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHH
Confidence 22 111233467888899999988776553332 2245567788899999999999999999
Q ss_pred HHHHHHH
Q psy4339 156 LKAIAIK 162 (303)
Q Consensus 156 ~~al~~~ 162 (303)
+-.++..
T Consensus 178 Qa~lE~n 184 (321)
T PF08424_consen 178 QALLEFN 184 (321)
T ss_pred HHHHHHH
Confidence 9888864
No 328
>KOG4814|consensus
Probab=91.55 E-value=11 Score=34.59 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=69.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
+...+|..++++|..++..+... ..+...+....+++ .+|....+.|.|.+++++|-+. +
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~----------~CYL~L~QLD~A~E~~~EAE~~--------d 424 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQ----------VCYLKLEQLDNAVEVYQEAEEV--------D 424 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHhh--------c
Confidence 47889999999999998875431 23344677788888 7779999999999999999885 2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
|...-....+-......+.-++|+.+........
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 2223333445555666788899999888776654
No 329
>KOG3364|consensus
Probab=91.42 E-value=3.5 Score=29.62 Aligned_cols=71 Identities=7% Similarity=-0.023 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
...+..++|+.+ .--....+..+.+.+++..++. ..+...-...+.||.-+.+.++|++|+.+.+..
T Consensus 31 s~~s~f~lAwaL-------V~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 31 SKQSQFNLAWAL-------VRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred hHHHHHHHHHHH-------HcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 346667777555 2223445566677777766651 223345567888999999999999999999888
Q ss_pred HHHH
Q psy4339 159 IAIK 162 (303)
Q Consensus 159 l~~~ 162 (303)
++..
T Consensus 98 l~~e 101 (149)
T KOG3364|consen 98 LETE 101 (149)
T ss_pred HhhC
Confidence 7653
No 330
>KOG0508|consensus
Probab=91.12 E-value=3 Score=36.44 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
..+-..+--+++=+++.++|++||++.......|-+| ..+|+++..++.+.-|+++-.+.+.+-+|..+..+...+
T Consensus 311 v~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavy----ad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFa 386 (615)
T KOG0508|consen 311 VEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVY----ADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFA 386 (615)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeee----cCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Confidence 3444556667888999999999999876666666344 799999999999999999999998888998888888888
Q ss_pred HHHHHHhhhh----------HHHHhhhhHHHHHHHHHHHHHHHH
Q psy4339 88 LILEEIALDS----------NELISVQFYKEAELLHQNALVLSL 121 (303)
Q Consensus 88 ~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~al~~~~ 121 (303)
.++..+--+. ..-...|=+.++.--.++++....
T Consensus 387 elFS~mL~d~~~~g~~~~~i~~~~~~~Vl~k~vlEvEra~~~t~ 430 (615)
T KOG0508|consen 387 ELFSFMLQDFAAKGSLGTQIGFDDLMGVLTKSVLEVERALALTR 430 (615)
T ss_pred HHHHHHhhhhhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 7665432111 111233444555555666666543
No 331
>KOG0687|consensus
Probab=91.12 E-value=8.1 Score=32.28 Aligned_cols=131 Identities=14% Similarity=0.069 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 135 (303)
+-++-+.+.++-.++.+| ......+..+.| .-|++.|+-+.|++.+++..+-.-.. +...++.-+.
T Consensus 82 eki~eld~~iedaeenlG--E~ev~ea~~~ka----------eYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~ 147 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLG--ESEVREAMLRKA----------EYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYK 147 (393)
T ss_pred HHHHHHHHHHHHHHHhcc--hHHHHHHHHHHH----------HHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHH
Confidence 344555566666555433 334667788888 77799999999999998877643322 2334566677
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+|.+|....-..+.++ +|-.+.++ |.+....-.....-|.... ...++.+|-.+|-.++..+.
T Consensus 148 iRlglfy~D~~lV~~~ie---kak~liE~--GgDWeRrNRlKvY~Gly~m-svR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 148 IRLGLFYLDHDLVTESIE---KAKSLIEE--GGDWERRNRLKVYQGLYCM-SVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHhhccHHHHHHHHH---HHHHHHHh--CCChhhhhhHHHHHHHHHH-HHHhHHHHHHHHHHHccccc
Confidence 889999987765555444 33344443 2332322233344555665 77899999999988876665
No 332
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=7.6 Score=31.90 Aligned_cols=132 Identities=11% Similarity=-0.009 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
++-++-+.+.++-.+.. ......+.+..++| .-|...++.+.+.++..+.++-.... .-..++.-+
T Consensus 92 eeki~Elde~i~~~eed--ngE~e~~ea~~n~a----------eyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~ 157 (412)
T COG5187 92 EEKIEELDERIREKEED--NGETEGSEADRNIA----------EYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLC 157 (412)
T ss_pred HHHHHHHHHHHHHHhhc--ccchHHHHHHHHHH----------HHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHH
Confidence 44455555555554442 12345678889999 77799999999999999887754332 234456666
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
-..||.+|..+.-.++.++.....++ + |.+....-......|...+ ...++.+|-.++-.++..+.
T Consensus 158 kiRlg~~y~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m-~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 158 KIRLGLIYGDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKM-MRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHhcccc
Confidence 77899999888877777766655544 3 2332332333345566666 77889999999888776655
No 333
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.84 E-value=2.8 Score=27.85 Aligned_cols=35 Identities=11% Similarity=-0.061 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|....+.+.+|..+. ..|++++|++.+-.++...+
T Consensus 19 P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 19 PDDLDARYALADALL-AAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp TT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-T
T ss_pred CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCc
Confidence 666688899999998 99999999999999887765
No 334
>PRK10941 hypothetical protein; Provisional
Probab=90.48 E-value=4.1 Score=33.34 Aligned_cols=71 Identities=10% Similarity=-0.002 Sum_probs=54.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.+|...++++.|+.+.+..+.+ .+++|. -+-..|.+|.++|.+..|..-++.-++.+ ++.|....+.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~dp~a~~ik 255 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQF-----DPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PEDPISEMIR 255 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CCchhHHHHH
Confidence 7789999999999999999986 244443 34578999999999999999999888765 5566654444
Q ss_pred HHHH
Q psy4339 178 GHLA 181 (303)
Q Consensus 178 ~~la 181 (303)
..+.
T Consensus 256 ~ql~ 259 (269)
T PRK10941 256 AQIH 259 (269)
T ss_pred HHHH
Confidence 4443
No 335
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.13 E-value=2.9 Score=40.50 Aligned_cols=86 Identities=16% Similarity=0.087 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH----HHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVG----HLASLYNY 186 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~la~~~~~ 186 (303)
+.|.+|+..++...+ .+...--|..-|.+|..+|+++|-++++.-|++.+ ++||......- .+-.+..
T Consensus 533 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~- 604 (932)
T PRK13184 533 RDFTQALSEFSYLHG--GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLY- 604 (932)
T ss_pred HHHHHHHHHHHHhcC--CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHH-
Confidence 556666666665532 23333347788899999999999999999999887 66776654332 2222221
Q ss_pred hhcCHHHHHHHHHHHHHhhh
Q psy4339 187 HMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~ 206 (303)
.+-..|....--++.+.|
T Consensus 605 --~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 605 --KHRREALVFMLLALWIAP 622 (932)
T ss_pred --HHHHHHHHHHHHHHHhCc
Confidence 122345455555555555
No 336
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=89.95 E-value=5.2 Score=28.16 Aligned_cols=68 Identities=16% Similarity=0.025 Sum_probs=50.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNV-------QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+.....+++-.|+-.|++|+.+.++....+.. .......|||.++..+|+.+=.++|++-|-+.....
T Consensus 9 d~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 9 DQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 44578889999999999999998876322211 123456799999999999999999998876654443
No 337
>KOG3783|consensus
Probab=89.87 E-value=14 Score=33.07 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE-YHKAEKLYFRSIEIND 206 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~-~~~A~~~~~~al~~~~ 206 (303)
..+..--+..+|.++..+|+...|..+|..+++-. .....++-..+.+++.+|.+|. .+|. ..++..++.+|-....
T Consensus 445 ~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~-~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 445 SDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYW-DLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHH-hcccChHHHHHHHHHHHhhcc
Confidence 33445567789999999999999999999888652 2223455557789999999997 9988 9999999999987653
No 338
>KOG3783|consensus
Probab=89.74 E-value=15 Score=33.00 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHh
Q psy4339 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYEC 248 (303)
Q Consensus 169 ~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 248 (303)
+..+..--+.-+|.+++ .+|+...|..++..+++-.. ....+....+.+++.+|..+..
T Consensus 444 d~Dd~~lk~lL~g~~lR-~Lg~~~~a~~~f~i~~~~e~--------------------~~~~d~w~~PfA~YElA~l~~~ 502 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILR-NLGDSEVAPKCFKIQVEKES--------------------KRTEDLWAVPFALYELALLYWD 502 (546)
T ss_pred CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH--------------------hhccccccccHHHHHHHHHHHh
Confidence 33444555677899998 99999999999998886522 3344455677889999999999
Q ss_pred hhc-HHHHHHHHHHH
Q psy4339 249 LEN-FEKMTEFTNKL 262 (303)
Q Consensus 249 ~g~-~~~A~~~~~~~ 262 (303)
+|. ..++.+++.++
T Consensus 503 ~~g~~~e~~~~L~kA 517 (546)
T KOG3783|consen 503 LGGGLKEARALLLKA 517 (546)
T ss_pred cccChHHHHHHHHHH
Confidence 999 99999977666
No 339
>KOG4014|consensus
Probab=89.73 E-value=7.5 Score=29.65 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=92.9
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhh--hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNE--YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
++-..+-|+.|.++++....++ ..+.+.+.+| .|+..- ...++...|+..+..+-+. +.| .+-.+
T Consensus 44 lEgi~knF~~A~kv~K~nCden--~y~kSCyKyG-~y~~~GKgG~~~~l~~a~r~~~~aC~~-------n~~---~aC~~ 110 (248)
T KOG4014|consen 44 LEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYG-MYMLAGKGGDDASLSKAIRPMKIACDA-------NIP---QACRY 110 (248)
T ss_pred HHHHHHHHHHHHHHHHhccccc--CCcHHHHHhh-hhhhcccCCCccCHHHHHHHHHHHhcc-------CCH---HHHhh
Confidence 3444556888888888765433 3456777777 343100 0234566777777766542 233 44445
Q ss_pred HHHHHHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH------------------------HH
Q psy4339 86 KALILEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGENNVQTAKHYGN------------------------IG 139 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------la 139 (303)
+|++...-.. -+.+ +..+|++++.++-++-. ..+-++ -+
T Consensus 111 ~gLl~~~g~~-----~r~~dpd~~Ka~~y~traCdl~~----------~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~ 175 (248)
T KOG4014|consen 111 LGLLHWNGEK-----DRKADPDSEKAERYMTRACDLED----------GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRA 175 (248)
T ss_pred hhhhhccCcC-----CccCCCCcHHHHHHHHHhccCCC----------chHHHHHHHHHhccchhhcccCCCCCCCcchh
Confidence 5543311110 1222 36788888888766410 111112 22
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHhhh
Q psy4339 140 RLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML-----EYHKAEKLYFRSIEIND 206 (303)
Q Consensus 140 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-----~~~~A~~~~~~al~~~~ 206 (303)
..+.-..+.++|..+--+|.++. ...+..|+++.| .+| +-++|..+-.+|.++.+
T Consensus 176 ~~~~~~kDMdka~qfa~kACel~----------~~~aCAN~SrMy--klGDGv~Kde~~Aekyk~rA~e~~~ 235 (248)
T KOG4014|consen 176 ELGSLSKDMDKALQFAIKACELD----------IPQACANVSRMY--KLGDGVPKDEDQAEKYKDRAKEIME 235 (248)
T ss_pred hhhhhhHhHHHHHHHHHHHHhcC----------ChHHHhhHHHHH--HccCCCCccHHHHHHHHHHHHHHHH
Confidence 33444567788888877777642 335667888887 465 57899999999999887
No 340
>KOG1538|consensus
Probab=89.67 E-value=17 Score=33.58 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=29.8
Q ss_pred HHHHHHHhhcHHHHHHHH------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 138 IGRLYQSMQKFDEAERMQ------LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 138 la~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
-|..+...|+.++|+... +-++++.++.. ......+..++..+. ....+.-|.+.|++
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk-~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLK-KLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHh-hccccchHHHHHHH
Confidence 356677778888877654 33455544431 111233344444443 45555555555544
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.00 E-value=0.86 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.++|..|..+|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5799999999999999999999884
No 342
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.91 E-value=7.9 Score=28.81 Aligned_cols=89 Identities=6% Similarity=-0.098 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
......+..+..+- ...++.+++...+.- +... .|.....-..-| ..+...|++.+|+
T Consensus 7 ~~iv~gLie~~~~a----l~~~~~~D~e~lL~A-LrvL-------RP~~~e~~~~~~----------~l~i~r~~w~dA~ 64 (160)
T PF09613_consen 7 DEIVGGLIEVLSVA----LRLGDPDDAEALLDA-LRVL-------RPEFPELDLFDG----------WLHIVRGDWDDAL 64 (160)
T ss_pred HHHHHHHHHHHHHH----HccCChHHHHHHHHH-HHHh-------CCCchHHHHHHH----------HHHHHhCCHHHHH
Confidence 34555666555444 477888888877754 4432 334444444455 5558999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD 149 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 149 (303)
..++.... ..|....+-..++.|+..+|+.+
T Consensus 65 rlLr~l~~--------~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 65 RLLRELEE--------RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHhc--------cCCCChHHHHHHHHHHHHcCChH
Confidence 99998654 23434444556888888888763
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.89 E-value=13 Score=33.06 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
..|..||.....+|+++-|+++|+++-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 367788888888888888888887763
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.86 E-value=5.2 Score=29.33 Aligned_cols=69 Identities=7% Similarity=-0.135 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
......+..+..+-...++.+++...+...--+. |.....-..-|.++. ..|++++|+..++....-.+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--------P~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLR--------PNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCC
Confidence 3444555666666666889999988876443332 555566677899998 99999999999998776554
No 345
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.45 E-value=14 Score=31.19 Aligned_cols=131 Identities=9% Similarity=-0.039 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
+.-+..+++|++. .++++.+...+...| .....-++..+-+++++... ++.+..-..
T Consensus 48 E~klsilerAL~~-----np~~~~L~l~~l~~~-------------~~~~~~~~l~~~we~~l~~~-----~~~~~LW~~ 104 (321)
T PF08424_consen 48 ERKLSILERALKH-----NPDSERLLLGYLEEG-------------EKVWDSEKLAKKWEELLFKN-----PGSPELWRE 104 (321)
T ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHH-------------HHhCCHHHHHHHHHHHHHHC-----CCChHHHHH
Confidence 3445556666555 234444444444444 44555566666666666641 334444444
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC----------chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD----------DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
|.+.-..-.....+++....|.+++.......... ......++..+..... ..|..+.|+..++-.+++
T Consensus 105 yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~-~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 105 YLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR-QAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH-HCCchHHHHHHHHHHHHH
Confidence 44443333445568888999999888766543322 2234566778888887 999999999999999987
Q ss_pred hhhhh
Q psy4339 205 NDNLK 209 (303)
Q Consensus 205 ~~~~~ 209 (303)
.-..|
T Consensus 184 n~~~P 188 (321)
T PF08424_consen 184 NFFRP 188 (321)
T ss_pred HcCCc
Confidence 65444
No 346
>KOG3824|consensus
Probab=88.33 E-value=1.5 Score=36.14 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.-.+.|.-....|+.++|..+|+.|+.+. |....++..+|.... .-++.-+|-.+|-+|+.+.|
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCC
Confidence 33455666677899999999999999875 444566788999987 78899999999999999988
No 347
>PF12854 PPR_1: PPR repeat
Probab=88.13 E-value=1.2 Score=23.26 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
..+|+.|-..|.+.|+.++|.+++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45789999999999999999999875
No 348
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=87.97 E-value=13 Score=30.03 Aligned_cols=99 Identities=11% Similarity=-0.070 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 108 EAELLHQNALVLSLKHFGENN---VQTAKHYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
+=...+...+.+..+.+-+.. ......+-..|..|...-. .++|...|++|+++.....++.+|...
T Consensus 91 EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirL 170 (244)
T smart00101 91 ELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRL 170 (244)
T ss_pred HHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHH
Confidence 445566667776655443321 2233334455665555422 458999999999998877788888887
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....|.+..|..-+++.++|..+.++|+.-.-
T Consensus 171 gLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 171 GLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 77788887774246999999988888886554
No 349
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.58 E-value=4.2 Score=25.90 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
+..+...|.-+-..|++++|+.+|+++++...+..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888999999999999999877654
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.57 E-value=1.3 Score=24.88 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
..+|.+|. .+|+.+.|...+++++.
T Consensus 3 LdLA~ayi-e~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYI-EMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 57899998 99999999999999985
No 351
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=87.33 E-value=18 Score=31.22 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=84.5
Q ss_pred cccHHHHHHHHHHHHHHHHhhC-----CcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLL-----PENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG 125 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 125 (303)
-.+|++|..+|..+...+.+.. .+.-.+-..+....+.+|..++ ...++.+.-....++=+++.+....
T Consensus 137 ~~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~La------fFE~~~~r~~kmhkRR~d~Le~~~~ 210 (371)
T PF12309_consen 137 CLDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLA------FFEEDPDRQIKMHKRRADLLEPLLK 210 (371)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH------hhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999888887766542 1222223444555554443222 4457777777777777777665543
Q ss_pred CCcHH-----HHHHHHHHHHHHHHh-------hc--------------------HHHHHHHHHHHHHHHHHhcCCC----
Q psy4339 126 ENNVQ-----TAKHYGNIGRLYQSM-------QK--------------------FDEAERMQLKAIAIKEKVLGKD---- 169 (303)
Q Consensus 126 ~~~~~-----~~~~~~~la~~~~~~-------~~--------------------~~~A~~~~~~al~~~~~~~~~~---- 169 (303)
.-+|. .-..+..+|.+|..+ .+ ...|+.+|+.-++.+...-+..
T Consensus 211 ~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~ 290 (371)
T PF12309_consen 211 ELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEK 290 (371)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 33332 123444555554332 22 2345666666665554211001
Q ss_pred -----chHHHHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHhhh
Q psy4339 170 -----DYEVGLSVGHLASLYNYHM---------LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 170 -----~~~~~~~~~~la~~~~~~~---------g~~~~A~~~~~~al~~~~ 206 (303)
......++..+|.+|. +. ++...++.+|+.++....
T Consensus 291 ~~~d~~~~~l~a~f~~arl~~-K~~~~~~~~~~~~l~~sl~~y~~vv~y~~ 340 (371)
T PF12309_consen 291 LDEDELRPYLYAYFHIARLYS-KLITSDPKEQLENLEKSLEYYKWVVDYCE 340 (371)
T ss_pred CcHHHHHHHHHHHHHHHHHHc-cccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234677889999985 65 456677777777777666
No 352
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.89 E-value=21 Score=31.44 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=43.0
Q ss_pred HhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q psy4339 186 YHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEW 265 (303)
Q Consensus 186 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 265 (303)
|.+|+|.++.-+-.-..+++| ...++.-+|.+.....+|++|..++..+-..
T Consensus 473 ysqgey~kc~~ys~WL~~iaP----------------------------S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP----------------------------SPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC----------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 489999999888777777766 3456899999999999999999988777333
Q ss_pred H
Q psy4339 266 K 266 (303)
Q Consensus 266 ~ 266 (303)
+
T Consensus 525 ~ 525 (549)
T PF07079_consen 525 E 525 (549)
T ss_pred h
Confidence 3
No 353
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.67 E-value=2.2 Score=34.90 Aligned_cols=46 Identities=30% Similarity=0.255 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 151 AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 151 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
|..+|.+|+.+. |..+..++.+|.+.. ..|+.-.|+-+|-+++-..
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhc-cccchHHHHHHHHHHHhcC
Confidence 678999999887 778899999999998 8999999999999998543
No 354
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=86.38 E-value=21 Score=30.89 Aligned_cols=154 Identities=12% Similarity=-0.017 Sum_probs=87.3
Q ss_pred HhHHHHHHHHHHHHHHHHhC----CCc-HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh----
Q psy4339 8 LKNLSLCSQLALKLKQVLFG----SEN-LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL---- 78 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~----~~~-~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---- 78 (303)
++.|..+|..+...+.+... +++ .+.+.+....+.+|-.+-+-.++.+.-....++-+++++.....-+|.
T Consensus 140 f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~ 219 (371)
T PF12309_consen 140 FDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLN 219 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 45566666666555544321 122 223444444443331111245788888889998888887765443443
Q ss_pred -hHHHHHHHHHHHHHHhhhhHHHHh--------------------hhhHHHHHHHHHHHHHHHHHhhCCC---------c
Q psy4339 79 -LTSAHRVKALILEEIALDSNELIS--------------------VQFYKEAELLHQNALVLSLKHFGEN---------N 128 (303)
Q Consensus 79 -~~~~~~~la~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~al~~~~~~~~~~---------~ 128 (303)
....+..+|.++.+|- .+... ..-...|+.+|+.-++.+....+.. .
T Consensus 220 ~~rql~fElae~~~~i~---dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~ 296 (371)
T PF12309_consen 220 LCRQLWFELAEIYSEIM---DLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDEL 296 (371)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHH
Confidence 3456677777776554 22222 2234567778888777765321010 1
Q ss_pred HHHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSM---------QKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~ 164 (303)
.....+++.+|.+|.+. +....|+.+|+.+++.+++
T Consensus 297 ~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~ 341 (371)
T PF12309_consen 297 RPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEK 341 (371)
T ss_pred HHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23457888999999776 4455666666666665543
No 355
>KOG4563|consensus
Probab=86.34 E-value=3 Score=35.16 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKL 197 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~ 197 (303)
..-+...|.-.+.++++++|...|..|..+....+|..+.....+++..|..+. ..++.+...-.
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslL-ela~~e~~VL~ 105 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLL-ELAKEESQVLG 105 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 344567888999999999999999999999999999999999999999999996 88877655433
No 356
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=86.24 E-value=42 Score=34.21 Aligned_cols=163 Identities=16% Similarity=0.063 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH---hhhh----HH------
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI---ALDS----NE------ 99 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~----~~------ 99 (303)
.+...-.+|..+ ...|++.+|+..|.+|++..+.. .|+.-.+.++-.++.+..-+ ++.. .+
T Consensus 241 ~gR~~k~~gd~~----LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~ 314 (1185)
T PF08626_consen 241 KGRLQKVLGDLY----LLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPI 314 (1185)
T ss_pred hhhhhhhhhhHH----HHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCC
Confidence 345566677544 68999999999999999998874 44444555555554332111 0000 00
Q ss_pred ----------------------------------------HHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy4339 100 ----------------------------------------LISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIG 139 (303)
Q Consensus 100 ----------------------------------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 139 (303)
-.-...+++|+.+|.++.....+. -...-...+...++
T Consensus 315 ~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~--~p~lv~~E~~lr~~ 392 (1185)
T PF08626_consen 315 SSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEY--VPQLVYSEACLRFA 392 (1185)
T ss_pred CCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccccc--CcchHHHHHHHHHH
Confidence 001113445555555544322211 01113456777888
Q ss_pred HHHHHhh--------------------cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 140 RLYQSMQ--------------------KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 140 ~~~~~~~--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
.++.... .-.++..+..++..+.-.. -...+....+..+|.+|. ..|-..++--+++
T Consensus 393 ~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~-~lG~~RK~AFvlR 469 (1185)
T PF08626_consen 393 RFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYG-SLGFHRKKAFVLR 469 (1185)
T ss_pred HHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHH-hcchhHHHHHHHH
Confidence 8888877 7788888888888765332 234566788999999998 9999888888888
Q ss_pred HHHHhhh
Q psy4339 200 RSIEIND 206 (303)
Q Consensus 200 ~al~~~~ 206 (303)
.++...-
T Consensus 470 ~l~~~~~ 476 (1185)
T PF08626_consen 470 ELAVQLV 476 (1185)
T ss_pred HHHHHhc
Confidence 8776553
No 357
>KOG3824|consensus
Probab=86.18 E-value=2.1 Score=35.36 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=47.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 99 ELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
-....|+.++|...|+.|+++ .|....++..+|.+....++.-+|-.+|-+|+.+.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 336889999999999999996 23444567889999999999999999999998774
No 358
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.14 E-value=18 Score=29.84 Aligned_cols=62 Identities=16% Similarity=0.008 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF 252 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (303)
...++..++..+. ..|+++.++..+++-+...| ..-..+..+-..|...|+.
T Consensus 152 ~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp---------------------------~~E~~~~~lm~~y~~~g~~ 203 (280)
T COG3629 152 FIKALTKLAEALI-ACGRADAVIEHLERLIELDP---------------------------YDEPAYLRLMEAYLVNGRQ 203 (280)
T ss_pred HHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCc---------------------------cchHHHHHHHHHHHHcCCc
Confidence 4667888999997 99999999999999887766 4445678888999999999
Q ss_pred HHHHHHHHHH
Q psy4339 253 EKMTEFTNKL 262 (303)
Q Consensus 253 ~~A~~~~~~~ 262 (303)
..|+..++.+
T Consensus 204 ~~ai~~y~~l 213 (280)
T COG3629 204 SAAIRAYRQL 213 (280)
T ss_pred hHHHHHHHHH
Confidence 9999966665
No 359
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=86.08 E-value=8.5 Score=27.41 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
+.-..-...+++++..+... .-.+++....++...|.... ++.+.|..... +..| ...+..+...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~---~~IG---~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYS---KGIG---TKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHH---HTTS---TTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHH---cCcc---HHHHHHHHHHHH
Confidence 34445566788888877542 22345666666666555432 77777765443 2234 334567889999
Q ss_pred HHHHhhcCHHHHHHHHHHHH
Q psy4339 183 LYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~al 202 (303)
.+. ..|++.+|.+.|+.++
T Consensus 108 ~le-~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLE-KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHH-HTT-HHHHHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHHhhC
Confidence 997 9999999999999875
No 360
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=85.48 E-value=26 Score=31.77 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
..++.+|.+|+...+..++..| ...|..+|..|++.+++.+|+..+-+|-...+.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999998887654332 345778999999999999999999998776544
No 361
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=85.38 E-value=7.7 Score=25.02 Aligned_cols=24 Identities=8% Similarity=-0.256 Sum_probs=17.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhh
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHF 124 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~ 124 (303)
-..|+.++|+.+|++++....+-.
T Consensus 19 dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 19 DEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHc
Confidence 445788888888888888776643
No 362
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=85.18 E-value=47 Score=33.86 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=35.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQ 143 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 143 (303)
+.+...|++.+|+..|..|+...+.. .|+.+.+.++-.++.+..
T Consensus 250 d~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~ 293 (1185)
T PF08626_consen 250 DLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLL 293 (1185)
T ss_pred hHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHH
Confidence 77799999999999999999998864 566677777766665443
No 363
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.04 E-value=1.3 Score=34.84 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 141 LYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 141 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.....++.+-|.+.+.+++++. |.....|..+|.... +.|+++.|...|++.+++.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~e-kag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTE-KAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhh-hcccHHHHHHHHHHHHcCCcc
Confidence 3455688899999999999875 777888999999998 999999999999999999884
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.98 E-value=15 Score=32.54 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHH----------------HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLK----------------AIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~----------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
...++..+..+|-++.|+.+.+. |+++.+. ......|..||.... .+|+++-|+.+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL-~~g~~~lAe~c~ 370 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL-RQGNIELAEECY 370 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH-HTTBHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 44566666777777666655422 2222211 112347899999998 999999999999
Q ss_pred HHHHHhhh
Q psy4339 199 FRSIEIND 206 (303)
Q Consensus 199 ~~al~~~~ 206 (303)
+++-....
T Consensus 371 ~k~~d~~~ 378 (443)
T PF04053_consen 371 QKAKDFSG 378 (443)
T ss_dssp HHCT-HHH
T ss_pred HhhcCccc
Confidence 98755443
No 365
>KOG4521|consensus
Probab=84.75 E-value=44 Score=33.22 Aligned_cols=132 Identities=14% Similarity=0.034 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh-----------------CCcchhh--h-HHHHHHHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL-----------------LPENHLL--L-TSAHRVKALILEEI 93 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~~--~-~~~~~~la~~~~~~ 93 (303)
......+|.+| ...|.-.+|+.+|.+|..-..+- ..++.+. . +.-|+... .
T Consensus 920 ~v~rfmlg~~y----l~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv--~--- 990 (1480)
T KOG4521|consen 920 PVIRFMLGIAY----LGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKV--V--- 990 (1480)
T ss_pred HHHHHhhheee----ecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHH--H---
Confidence 34556677555 58899999999999987542110 0001111 0 00011100 0
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
..+...+-.+.+.+...+|++. .+++.|..+.++.++=..+..+|.+-+|...+-+- ++....
T Consensus 991 ----rlle~hn~~E~vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserr 1053 (1480)
T KOG4521|consen 991 ----RLLEEHNHAEEVCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERR 1053 (1480)
T ss_pred ----HHHHHhccHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHH
Confidence 2333444444444444444443 35667777777777777788888887776654322 233334
Q ss_pred HHHHHHHHHHHHHhhcCHH
Q psy4339 174 GLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~ 192 (303)
..++..+-.++. ..|+++
T Consensus 1054 rdcLRqlvivLf-ecg~l~ 1071 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLF-ECGELE 1071 (1480)
T ss_pred HHHHHHHHHHHH-hccchH
Confidence 456677777774 777654
No 366
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.66 E-value=19 Score=29.03 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHh
Q psy4339 147 KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLK 226 (303)
Q Consensus 147 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~ 226 (303)
.-...++++.+|++.+.+. ............+|..|. ..|++++|..+++.+.....
T Consensus 153 hs~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~yr-------------------- 209 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASSYR-------------------- 209 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH--------------------
Confidence 3446688888888887664 223444556779999996 99999999999999976655
Q ss_pred hhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 227 LFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
-.....-...++..+..++...|+.+..+.
T Consensus 210 -~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 210 -REGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred -hCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 122233355678889999999999988887
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.42 E-value=22 Score=29.36 Aligned_cols=139 Identities=11% Similarity=0.016 Sum_probs=92.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
....++.-+......++...+. .... ....-..+. ..+...|.|.+|+......+.-+++. .+.
T Consensus 97 ~~dsl~dqi~v~~~~iewA~rE---kr~fLr~~Le~Kli----------~l~y~~~~YsdalalIn~ll~ElKk~--DDK 161 (421)
T COG5159 97 SSDSLEDQIKVLTALIEWADRE---KRKFLRLELECKLI----------YLLYKTGKYSDALALINPLLHELKKY--DDK 161 (421)
T ss_pred CCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----------HHHHhcccHHHHHHHHHHHHHHHHhh--cCc
Confidence 4556666666666666654431 1111 111111222 66689999999999999988888775 566
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV-GLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.....+..-..+|....+..++...+..|-......+.| |.. +..-..=|.... .-.+|..|..+|-++++-+.
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhc-dd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHC-DDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceee-ccccchhHHHHHHHHHhccc
Confidence 7777778788899999999999999998887766554332 322 222222355555 67789999999999987665
No 368
>KOG1497|consensus
Probab=84.15 E-value=24 Score=29.58 Aligned_cols=109 Identities=17% Similarity=0.084 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
.+..+...||.+|...++|..|-..+.- +.........+.......+..+|.+|. ..++..+|..+..++--...
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyL-e~~d~veae~~inRaSil~a--- 175 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYL-EDDDKVEAEAYINRASILQA--- 175 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhhh---
Confidence 4567788999999999999998877642 222110000111234556788999998 99999999999888754333
Q ss_pred hhhhhhhhhhhhHHHHhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 210 LFSASYSGLEYHYRDLKLFSASYSG-LEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 210 ~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
.. .++. ....-...|.+.-..++|-+|.. |++..
T Consensus 176 ------------------~~-~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 176 ------------------ES-SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred ------------------cc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2222 23334456778888888888877 66443
No 369
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=83.99 E-value=2 Score=21.27 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+|+.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467888999999999999999987653
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.88 E-value=9.9 Score=31.33 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEK 254 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (303)
..+.-.+..|. ..|.+.+|+.+.++++...| -....+..+-.++...|+--.
T Consensus 280 kllgkva~~yl-e~g~~neAi~l~qr~ltldp---------------------------L~e~~nk~lm~~la~~gD~is 331 (361)
T COG3947 280 KLLGKVARAYL-EAGKPNEAIQLHQRALTLDP---------------------------LSEQDNKGLMASLATLGDEIS 331 (361)
T ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHHhhcCh---------------------------hhhHHHHHHHHHHHHhccchh
Confidence 34455677887 89999999999999998877 344557788889999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q psy4339 255 MTEFTNKLSEWKILRETNELN 275 (303)
Q Consensus 255 A~~~~~~~~~~~~~~~~~~~~ 275 (303)
|.+.++.. .+...+.+|-
T Consensus 332 ~~khyery---a~vleaelgi 349 (361)
T COG3947 332 AIKHYERY---AEVLEAELGI 349 (361)
T ss_pred hhhHHHHH---HHHHHHHhCC
Confidence 99855544 4555566665
No 371
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.82 E-value=2.4 Score=34.71 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
|..+|.+|+.+ .|..+..+++||.++...|+.=.|+-+|-+++-. ..|- ..+..||..++.
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHH
Confidence 67899999997 4667888999999999999999999999998743 2232 445666666665
No 372
>KOG0687|consensus
Probab=83.31 E-value=26 Score=29.44 Aligned_cols=126 Identities=14% Similarity=0.049 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
++++++-.++.+| .....+++.+.|. || .+.|+-+.|++.+.+..+..-.. +...+.......+|.+|
T Consensus 87 ld~~iedaeenlG--E~ev~ea~~~kae-Yy---cqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy---- 154 (393)
T KOG0687|consen 87 LDEKIEDAEENLG--ESEVREAMLRKAE-YY---CQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFY---- 154 (393)
T ss_pred HHHHHHHHHHhcc--hHHHHHHHHHHHH-HH---HHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhh----
Confidence 3444444444444 3467889999995 66 89999999999999877653332 22344555666677544
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
. +.+--.+..++|-.+.++ |.|-...-..-..-|..++...+|.+|-.+|-.++..+.
T Consensus 155 ------~---D~~lV~~~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 155 ------L---DHDLVTESIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred ------c---cHHHHHHHHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 2 222222233333333332 233222222233457777888999999999988876543
No 373
>KOG0985|consensus
Probab=82.97 E-value=51 Score=32.53 Aligned_cols=127 Identities=11% Similarity=0.070 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh---h
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL---K 209 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~---~ 209 (303)
..|..+|....+.|...+|++.|-+| ++| ..+...-.+.. ..|+|++-+.++..|-+..... .
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~-~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVAS-RTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHH-hcCcHHHHHHHHHHHHHhhcCccchH
Confidence 45888999999999999999988775 223 23556666666 8899999999988877655421 1
Q ss_pred hhhhhhh---hhhhhHHH--------Hhhhc-----cccc-------cHHHHHHhHHHHHHhhhcHHHHHHHHHHH---H
Q psy4339 210 LFSASYS---GLEYHYRD--------LKLFS-----ASYS-------GLEYDYRGLIHVYECLENFEKMTEFTNKL---S 263 (303)
Q Consensus 210 ~~~~~~~---~l~~~~~a--------~~~~~-----~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~ 263 (303)
.+..+|. ++..+.+- ++..| .... ....-+..||..+...|+|..|...-+++ .
T Consensus 1171 eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred HHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 1222222 12111110 01111 1100 11223456888888899999988844433 5
Q ss_pred HHHHHHhhhh
Q psy4339 264 EWKILRETNE 273 (303)
Q Consensus 264 ~~~~~~~~~~ 273 (303)
.|++.+....
T Consensus 1251 tWK~VcfaCv 1260 (1666)
T KOG0985|consen 1251 TWKEVCFACV 1260 (1666)
T ss_pred HHHHHHHHHh
Confidence 6776665443
No 374
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=82.80 E-value=15 Score=26.20 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh-CCcchhhhHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVA-IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL-LPENHLLLTSAHRVK 86 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~l 86 (303)
++....|++.+..+. - .++|-.+ .-+..-..-.| -..+.-..-...+++++..+... .-.+++....+....
T Consensus 2 ~~~r~~~e~~i~~~~--~-~dDPL~~w~~yI~w~~~~~---p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y 75 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYE--E-GDDPLDPWLRYIKWIEENY---PSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKY 75 (126)
T ss_dssp HHHHHHHHHHHHCCG--G-SS-CHHHHHHHHHHHHHHC---TTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--C-CCCChHHHHHHHHHHHHHC---CCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH
Confidence 444556666666544 1 3344332 22222111121 23345556677888888887542 113344455544444
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
+ . ..+.+.+.|.....- -.| ...+..|..-|.++...|++++|.+.|+.++
T Consensus 76 a--------------~--~~~~~~~if~~l~~~---~IG---~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 76 A--------------D--LSSDPREIFKFLYSK---GIG---TKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp H--------------T--TBSHHHHHHHHHHHH---TTS---TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred H--------------H--HccCHHHHHHHHHHc---Ccc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4 1 122677777654442 222 3456678889999999999999999998875
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.25 E-value=20 Score=29.65 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=54.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
..|...|.+.+|.++.++++.+ +|.....+..+-.++..+|+--.|.++|++--+..+..+|-+-...
T Consensus 287 ~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 6778899999999999999986 4555666778888889999999999999888777777666554433
No 376
>KOG3807|consensus
Probab=82.02 E-value=30 Score=29.21 Aligned_cols=91 Identities=12% Similarity=0.037 Sum_probs=55.4
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh-----
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF----- 124 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----- 124 (303)
...+..+-++....|+++ +|..+.++..+|. ....-..+|+..+++|++..+..+
T Consensus 196 RERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAE------------EEa~Ti~~AE~l~k~ALka~e~~yr~sqq 255 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEI--------NNECATAYVLLAE------------EEATTIVDAERLFKQALKAGETIYRQSQQ 255 (556)
T ss_pred HhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhh------------hhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334445555555666665 4666666666661 122345577777777776543321
Q ss_pred ----CC--------CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 125 ----GE--------NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 125 ----~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+. |......+-..||+|-.++|+..+|.+.++...+
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 11 1112233446799999999999999999987643
No 377
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.00 E-value=20 Score=27.22 Aligned_cols=121 Identities=10% Similarity=-0.135 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH--HHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL--SVGHL 180 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~l 180 (303)
.+..++|+.-|...-+ ......|.. +....|.+....|+...|+..|.++-.- ...|.... +-..-
T Consensus 71 ~~k~d~Alaaf~~lek----tg~g~YpvL--A~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlra 138 (221)
T COG4649 71 ENKTDDALAAFTDLEK----TGYGSYPVL--ARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRA 138 (221)
T ss_pred cCCchHHHHHHHHHHh----cCCCcchHH--HHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHH
Confidence 3455566655544333 223344544 4568899999999999999999886532 12243332 23344
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
|.++. ..|-|++-....+ ...++.+|....+...||..-.+.|++.+|..++.
T Consensus 139 a~lLv-D~gsy~dV~srve--------------------------pLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 139 AYLLV-DNGSYDDVSSRVE--------------------------PLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHHHh-ccccHHHHHHHhh--------------------------hccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 56666 7787776554332 23355667777788899999999999999999775
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
.+
T Consensus 192 qi 193 (221)
T COG4649 192 QI 193 (221)
T ss_pred HH
Confidence 55
No 378
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.95 E-value=11 Score=24.27 Aligned_cols=29 Identities=10% Similarity=-0.088 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+.|..+. ..|+.++|+.+|++++....
T Consensus 11 ~I~kaL~~d-E~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 11 EISKALRAD-EWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHhhhh-hcCCHHHHHHHHHHHHHHHH
Confidence 344455555 77999999999999998877
No 379
>KOG4563|consensus
Probab=81.43 E-value=8.8 Score=32.53 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=50.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+..+..+++++|...|..|..+..+.+|..+.....+++..|..+...++++.++-..
T Consensus 49 ~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 49 RRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred hHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5568899999999999999999999999999999999999999999988877665444
No 380
>KOG1463|consensus
Probab=81.35 E-value=32 Score=29.12 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=102.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH-HHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV-GLS 176 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~ 176 (303)
..|...++|.+|+......+.-.++. .|.+.....+..-..+|....+..+|...+..|-......+- +|.. +..
T Consensus 136 ~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--pPqlQa~l 211 (411)
T KOG1463|consen 136 RLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--PPQLQATL 211 (411)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--CHHHHHHH
Confidence 77799999999999999998888776 455566666777788899999999999998888766544432 2332 222
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhh----------------hhHHHHhhhccccccHHHHHH
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLE----------------YHYRDLKLFSASYSGLEYDYR 240 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~----------------~~~~a~~~~~~~~~~~~~~~~ 240 (303)
-..=|.++. ...+|..|..+|-+|++-+..-..--.+...|. .+..+.....-.. ....+..
T Consensus 212 DLqSGIlha-~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g-~~i~Amk 289 (411)
T KOG1463|consen 212 DLQSGILHA-AEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAG-RDIDAMK 289 (411)
T ss_pred HHhccceee-cccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccC-cchHHHH
Confidence 333466665 678999999999999887662111011111111 1111212222222 2345677
Q ss_pred hHHHHHHh--hhcHHHHHH-HHHHH
Q psy4339 241 GLIHVYEC--LENFEKMTE-FTNKL 262 (303)
Q Consensus 241 ~la~~~~~--~g~~~~A~~-~~~~~ 262 (303)
.+|..+.+ ..+|..|+. |...+
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHH
Confidence 78887764 578888988 65544
No 381
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=81.06 E-value=6.5 Score=20.93 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHH--HHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYF--RSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~--~al~~~~ 206 (303)
.+..+|..+. .+|++++|+..+. -+..+.+
T Consensus 3 ~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcc
Confidence 4567888995 9999999999954 5554443
No 382
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.74 E-value=5.6 Score=25.35 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=18.5
Q ss_pred hhcCHHHHHHHHHHHHHhhh
Q psy4339 187 HMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~ 206 (303)
..|++++|+.+|.++++.+.
T Consensus 18 ~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 68999999999999999887
No 383
>KOG0890|consensus
Probab=80.63 E-value=88 Score=33.87 Aligned_cols=110 Identities=15% Similarity=0.023 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
....+++|...|.+. +..|+++.|..+.-.|.+.. ...+....| ...+..|+-..|
T Consensus 1666 ~~~~ge~wLqsAria----R~aG~~q~A~nall~A~e~r----------~~~i~~E~A----------K~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIA----RLAGHLQRAQNALLNAKESR----------LPEIVLERA----------KLLWQTGDELNA 1721 (2382)
T ss_pred cchhHHHHHHHHHHH----HhcccHHHHHHHHHhhhhcc----------cchHHHHHH----------HHHHhhccHHHH
Confidence 456889999999877 78999999998888876651 335555566 555899999999
Q ss_pred HHHHHHHHHHHHHhhCCC---cHH------HHHHHHHHHHHHHHhhcHH--HHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGEN---NVQ------TAKHYGNIGRLYQSMQKFD--EAERMQLKAIAIKE 163 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~---~~~------~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~ 163 (303)
+..+++.+.......... .|. ...+...++......++++ .-+++|.++.++..
T Consensus 1722 l~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1722 LSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred HHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 999999997654321111 111 1123334444444455532 34666777776653
No 384
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.55 E-value=12 Score=23.87 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=19.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLK 122 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~ 122 (303)
-..|+|++|+.+|.++++.+..
T Consensus 17 D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHccCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998876
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.27 E-value=31 Score=28.20 Aligned_cols=154 Identities=14% Similarity=-0.008 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEA 109 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A 109 (303)
.+..+.+..=+..+ ...|++..|-+...-.++.+++...+.+. ....++..+. ...+ .-.+-
T Consensus 7 ~eAidLL~~Ga~~l----l~~~Q~~sg~DL~~lliev~~~~~~~~~~---~~~~rl~~l~----------~~~~~~~p~r 69 (260)
T PF04190_consen 7 DEAIDLLYSGALIL----LKHGQYGSGADLALLLIEVYEKSEDPVDE---ESIARLIELI----------SLFPPEEPER 69 (260)
T ss_dssp HHHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHHHHHTT---SH---HHHHHHHHHH----------HHS-TT-TTH
T ss_pred HHHHHHHHHHHHHH----HHCCCcchHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHH----------HhCCCCcchH
Confidence 33444555555444 46777777777776666666653222211 2223333222 2221 11134
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH--------HHHHhcCCCchHHHHHHHHH-
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA--------IKEKVLGKDDYEVGLSVGHL- 180 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~l- 180 (303)
.....+|++.. + .+.........+..+|..|...|++.+|..+|-.+-. +.........+.....+...
T Consensus 70 ~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 70 KKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp HHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred HHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 55666777766 2 2333334556788999999999999999999932211 11111111112222233333
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
..-|. ..|+...|...+..-.+.
T Consensus 148 VL~yL-~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYL-CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHH-HTTBHHHHHHHHHHHHHH
T ss_pred HHHHH-HhcCHHHHHHHHHHHHHH
Confidence 33444 678988888877666654
No 386
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.86 E-value=7.3 Score=24.85 Aligned_cols=22 Identities=23% Similarity=0.045 Sum_probs=19.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLK 122 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~ 122 (303)
-..|+|++|+.+|..|++.+..
T Consensus 17 D~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHHHH
Confidence 4578999999999999998865
No 387
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.81 E-value=7.3 Score=20.74 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
.+..+|-.+..+|++++|++.++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45678999999999999999954
No 388
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=79.61 E-value=4.4 Score=20.49 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+|+.+-..|.+.|++++|.+.|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466788889999999999999988654
No 389
>PF13041 PPR_2: PPR repeat family
Probab=79.27 E-value=5.4 Score=22.75 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
..+|+.+-..|.+.|++++|.++|++..+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35688899999999999999999998875
No 390
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.11 E-value=14 Score=23.57 Aligned_cols=32 Identities=16% Similarity=-0.021 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+..+...|.-+. ..|++.+|+.+|+++++...
T Consensus 6 A~~~a~~AVe~D-~~gr~~eAi~~Y~~aIe~L~ 37 (75)
T cd02682 6 ARKYAINAVKAE-KEGNAEDAITNYKKAIEVLS 37 (75)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHH
Confidence 344556677776 89999999999999998776
No 391
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=78.58 E-value=10 Score=29.04 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 125 GENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 125 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
+...|....++.++-.-|..+|+++-|+..++.+++-..+..|.++|.+
T Consensus 133 ~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 133 GYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp -TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 3456777889999999999999999999999999999988888888863
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.37 E-value=43 Score=28.86 Aligned_cols=135 Identities=13% Similarity=-0.017 Sum_probs=80.2
Q ss_pred cccHHHHHHHHHHHHHHHH-----hhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC
Q psy4339 51 SGRFTESRRHAEKAIQTFK-----NLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG 125 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 125 (303)
...|.++...|..++.... ..+ ..+|.-..++..++ .++..+|+...|.+..++|+-.++....
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll-~~~PyHidtLlqls----------~v~~~~gd~~~A~~lleRALf~~e~~~~ 75 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALINLL-QKNPYHIDTLLQLS----------EVYRQQGDHAQANDLLERALFAFERAFH 75 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHHHHH-HHCCCcHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665554310 000 23555567777788 6669999999999999999987764311
Q ss_pred C---------------------CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 126 E---------------------NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 126 ~---------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
+ .+...-.++........+.|-+.-|.++.+-.+.+. +.++|. .+...+-..-
T Consensus 76 ~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd----p~~DP~--g~ll~ID~~A 149 (360)
T PF04910_consen 76 PSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD----PDEDPL--GVLLFIDYYA 149 (360)
T ss_pred HHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----CCCCcc--hhHHHHHHHH
Confidence 1 122233455566677777888888888887766653 111332 2233333333
Q ss_pred HHhhcCHHHHHHHHHHHHH
Q psy4339 185 NYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 185 ~~~~g~~~~A~~~~~~al~ 203 (303)
. +.++++--+..++....
T Consensus 150 L-rs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 150 L-RSRQYQWLIDFSESPLA 167 (360)
T ss_pred H-hcCCHHHHHHHHHhHhh
Confidence 3 56777766666665443
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.29 E-value=45 Score=29.00 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=38.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH--HHhhcHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLY--QSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~al~~ 161 (303)
...+..++|..|.+.+...... . +.... ...+..++..| +...++.+|.++++..+..
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r---l--~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR---L--PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh---C--Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4447889999999999887764 1 11122 34555555544 5567788899888887654
No 394
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=77.57 E-value=50 Score=29.12 Aligned_cols=162 Identities=14% Similarity=-0.032 Sum_probs=97.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH-------HHHHHHHHHHHHHHHHhcC---
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF-------DEAERMQLKAIAIKEKVLG--- 167 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~~~~~~--- 167 (303)
+.....|+|+-|...|+-+.+-+... ......+.+....|.+....+.. ++...+++.|+..+.+...
T Consensus 216 D~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~ 293 (414)
T PF12739_consen 216 DLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRC 293 (414)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcccc
Confidence 77799999999999999988866431 11223456666677777666643 4778888888888776311
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh--hhhhh--hhhhhhhhhhhHHHHhhhcc--c---cccHHHH
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN--DNLKL--FSASYSGLEYHYRDLKLFSA--S---YSGLEYD 238 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~--~~~~~--~~~~~~~l~~~~~a~~~~~~--~---~~~~~~~ 238 (303)
........+....+.++. ..|.+.+|...+-+..... .+.+. .+..+.+++..+..+....+ . ....+.-
T Consensus 294 ~~~~~a~R~~ll~~ell~-~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK~af~ 372 (414)
T PF12739_consen 294 SLPYYALRCALLLAELLK-SRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRKYAFH 372 (414)
T ss_pred ccccchHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHHHHHH
Confidence 122244456667778887 8899888877776666542 21111 23333344433311111000 1 1122223
Q ss_pred HHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 239 YRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 239 ~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
+..=|.-|.+.|....|.. |.+++
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~ 397 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQAL 397 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345677889999999999 44554
No 395
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.55 E-value=39 Score=27.89 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=52.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
..+...|+++.+...+++.+.. +|..-..+..+-..|...|+...|+..|++.-.....-.|.++...
T Consensus 161 e~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 161 EALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 5667778888888888777764 4555667888999999999999999999998876555555554443
No 396
>KOG0276|consensus
Probab=76.71 E-value=12 Score=34.04 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=37.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
...|+++.|.+...++-.. .-+..||......+++..|.+++.+|.+.
T Consensus 648 l~lgrl~iA~~la~e~~s~-------------~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANSE-------------VKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHHhhcch-------------HHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 6678888887766554332 23678999999999999999999998665
No 397
>KOG1310|consensus
Probab=76.60 E-value=34 Score=30.87 Aligned_cols=90 Identities=9% Similarity=-0.116 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
.+....|+..|.+++.. .|.....+.+.|.+++..+-...+...+..+.... .-+|....+++.|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al-----rln~s~~kah~~la~ 453 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL-----RLNPSIQKAHFRLAR 453 (758)
T ss_pred hHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc-----cCChHHHHHHHHHHH
Confidence 44556677777777664 34455667777888877654444444443333322 224778889999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 183 LYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++. .++++.+|+.+...+....|
T Consensus 454 aL~-el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 454 ALN-ELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHH-HHhhHHHhhhhHHHHhhcCc
Confidence 997 99999999999877666655
No 398
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.30 E-value=17 Score=23.21 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+...|.-+-..|+|++|+.+|.++++.+..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 444555556679999999999999998766
No 399
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=44 Score=27.69 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
....++++.++|. || .+.++.+.+.++..+.++-.... +-..+...+...+|.+| ..+.-.++.
T Consensus 111 E~e~~ea~~n~ae-yY---~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y----------~d~~vV~e~ 174 (412)
T COG5187 111 ETEGSEADRNIAE-YY---CQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIY----------GDRKVVEES 174 (412)
T ss_pred chHHHHHHHHHHH-HH---HHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhh----------ccHHHHHHH
Confidence 4567899999995 66 79999999999999887764432 22334445555667444 444444444
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
++.....++ + |.+-...-..-..-|...+...+|.+|-.++..++..++
T Consensus 175 lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 175 LEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 444443333 2 333222222333467788888999999999988876553
No 400
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=75.23 E-value=17 Score=22.53 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+...|.-+-..|++++|+.+|.++++.....
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3455666666899999999999999877554
No 401
>KOG1310|consensus
Probab=75.18 E-value=30 Score=31.25 Aligned_cols=81 Identities=11% Similarity=-0.023 Sum_probs=53.9
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhH
Q psy4339 146 QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML---EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHY 222 (303)
Q Consensus 146 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~ 222 (303)
+....|+..|.+++... |.....+.+.+.+++ +.+ +.-.|+.-...|+.+.+
T Consensus 388 ~~~~~~i~~~s~a~q~~--------~~~~~~l~nraa~lm-kRkW~~d~~~AlrDch~Alrln~---------------- 442 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYV--------PDAIYLLENRAAALM-KRKWRGDSYLALRDCHVALRLNP---------------- 442 (758)
T ss_pred HHHHHHHHHHHHHhhhc--------cchhHHHHhHHHHHH-hhhccccHHHHHHhHHhhccCCh----------------
Confidence 44566777777776543 555667778888876 543 23334444444444433
Q ss_pred HHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 223 RDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 223 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....+++.|+.++...+++.+|+++..++
T Consensus 443 -----------s~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 443 -----------SIQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred -----------HHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 66778889999999999999999876665
No 402
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=73.68 E-value=19 Score=22.33 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+...|.-.. ..|++++|+.+|.+++....
T Consensus 7 ~~~~~Av~~D-~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 7 ELIKKAVEAD-EAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 3445666676 89999999999999998776
No 403
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.45 E-value=34 Score=25.21 Aligned_cols=88 Identities=10% Similarity=-0.006 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
.....+..+...- ...++.+++...+.. +... .|.....-..-| ..+...|++++|+.
T Consensus 8 ~iv~gLi~~~~~a----L~~~d~~D~e~lLdA-LrvL-------rP~~~e~d~~dg----------~l~i~rg~w~eA~r 65 (153)
T TIGR02561 8 RLLGGLIEVLMYA----LRSADPYDAQAMLDA-LRVL-------RPNLKELDMFDG----------WLLIARGNYDEAAR 65 (153)
T ss_pred HHHHHHHHHHHHH----HhcCCHHHHHHHHHH-HHHh-------CCCccccchhHH----------HHHHHcCCHHHHHH
Confidence 3444444444333 357788888776653 3332 233333333345 45588999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD 149 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 149 (303)
.++...+- .+.....-..++.|+..+|+.+
T Consensus 66 vlr~l~~~--------~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 66 ILRELLSS--------AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHhhhcc--------CCCchHHHHHHHHHHHhcCChH
Confidence 99986662 2222333445788888777753
No 404
>KOG4014|consensus
Probab=73.34 E-value=40 Score=25.93 Aligned_cols=64 Identities=19% Similarity=0.081 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-------KFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
..++...|.+.+..+-.. +.| .+-.++|.++..-. +.++|++++.++.++- ..
T Consensus 85 ~~~~l~~a~r~~~~aC~~-------n~~---~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~ 144 (248)
T KOG4014|consen 85 DDASLSKAIRPMKIACDA-------NIP---QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DG 144 (248)
T ss_pred CccCHHHHHHHHHHHhcc-------CCH---HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------Cc
Confidence 455778888888877662 333 34556777766532 2568888888876542 23
Q ss_pred HHHHHHHHHHH
Q psy4339 175 LSVGHLASLYN 185 (303)
Q Consensus 175 ~~~~~la~~~~ 185 (303)
.+.++|+..|.
T Consensus 145 ~aCf~LS~m~~ 155 (248)
T KOG4014|consen 145 EACFLLSTMYM 155 (248)
T ss_pred hHHHHHHHHHh
Confidence 45666666664
No 405
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=73.31 E-value=68 Score=29.25 Aligned_cols=75 Identities=15% Similarity=0.025 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+.++.+||.+--. .....-..++.+|.+|+...+..++..|. ..|..+| ..+++.++|.+|+..
T Consensus 276 YPmALg~LadLeEi--~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~g----------g~~yR~~~~~eA~~~ 340 (618)
T PF05053_consen 276 YPMALGNLADLEEI--DPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLG----------GYYYRHKRYREALRS 340 (618)
T ss_dssp -HHHHHHHHHHHHH--S--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHH----------HHHHHTT-HHHHHHH
T ss_pred CchhhhhhHhHHhh--ccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehh----------hHHHHHHHHHHHHHH
Confidence 45667777754421 12334467899999999999887665443 3455567 667899999999999
Q ss_pred HHHHHHHHHH
Q psy4339 113 HQNALVLSLK 122 (303)
Q Consensus 113 ~~~al~~~~~ 122 (303)
+-+|-.....
T Consensus 341 Wa~aa~Vi~~ 350 (618)
T PF05053_consen 341 WAEAADVIRK 350 (618)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9888776543
No 406
>KOG2114|consensus
Probab=73.30 E-value=90 Score=30.01 Aligned_cols=50 Identities=18% Similarity=0.035 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q psy4339 60 HAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLS 120 (303)
Q Consensus 60 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 120 (303)
.|.-|+.+.+.. +.+......+....| +-++..|++++|..+|-+++...
T Consensus 349 ly~~Ai~LAk~~-~~d~d~~~~i~~kYg----------d~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 349 LYKVAINLAKSQ-HLDEDTLAEIHRKYG----------DYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred hHHHHHHHHHhc-CCCHHHHHHHHHHHH----------HHHHhcCCHHHHHHHHHHHcccC
Confidence 344455555442 222333566666666 66689999999999999988753
No 407
>KOG2561|consensus
Probab=73.07 E-value=66 Score=28.36 Aligned_cols=117 Identities=19% Similarity=-0.002 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHHHHhhcH---HHHHHHHHHHH
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGE---NNVQTAKHYGNIGRLYQSMQKF---DEAERMQLKAI 159 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~---~~A~~~~~~al 159 (303)
+|+.+.+.+ .+......|++|+.++..|=+.+...... .-...+..-..+-+||..+.+. +.|..-+..|-
T Consensus 162 mglg~heka---Ra~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~ 238 (568)
T KOG2561|consen 162 MGLGLHEKA---RAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRAR 238 (568)
T ss_pred HHHhHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHH
Confidence 344444444 77789999999999999888876542100 0011223334567888877654 35555555554
Q ss_pred HHHHHhc-----------CCCchHHHH---HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 160 AIKEKVL-----------GKDDYEVGL---SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 160 ~~~~~~~-----------~~~~~~~~~---~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+-++..+ |+..|+.+. .+.--|.+. |++|+-++|.++++.+.....
T Consensus 239 kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~-yHqg~~deAye~le~a~~~l~ 298 (568)
T KOG2561|consen 239 KGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVA-YHQGQRDEAYEALESAHAKLL 298 (568)
T ss_pred HhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHH
Confidence 4444433 455565443 334557788 599999999999999887655
No 408
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=72.94 E-value=67 Score=29.43 Aligned_cols=115 Identities=14% Similarity=-0.043 Sum_probs=72.1
Q ss_pred CCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHH
Q psy4339 72 LPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEA 151 (303)
Q Consensus 72 ~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 151 (303)
+++.+|.+..... ++ ..+...+....+.-....++.. +|....++.+||......|..-.+
T Consensus 60 ~~~~~~~llla~~-ls----------i~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 60 INDVNPELLLAAF-LS----------ILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred cCCCCHHHHHHHH-HH----------hhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHH
Confidence 3566676544443 45 2335566666666666666653 455667788888888777776666
Q ss_pred HHHHHH-HHHHHHHhcCCCchH---HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh
Q psy4339 152 ERMQLK-AIAIKEKVLGKDDYE---VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF 211 (303)
Q Consensus 152 ~~~~~~-al~~~~~~~~~~~~~---~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 211 (303)
..-+.+ +.... ++... ....++.+|.... .+|+..++.....++..+.+.+|++
T Consensus 121 ~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 121 LADISEIAEWLS-----PDNAEFLGHLIRFYQLGRYLK-LLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHHHHHHhcC-----cchHHHHhhHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhhhhhhh
Confidence 555544 44332 11111 1112334788887 8999999999999999998866543
No 409
>KOG3807|consensus
Probab=72.81 E-value=58 Score=27.60 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=58.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC---------C---
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG---------K--- 168 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~--- 168 (303)
.+..+..+-++....|+++ +|.-+.+|..||.- ...-..+|++++++|++..+..+. .
T Consensus 195 WRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEI--------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 3444555555555566664 34445555555542 223356788888888876554321 1
Q ss_pred -----CchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 169 -----DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 169 -----~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
|..-...+...+|.+-+ ++|+..+|.+.++...+-.+
T Consensus 265 a~~rRDtnvl~YIKRRLAMCAR-klGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCAR-KLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcc
Confidence 11122345678999998 99999999999988766554
No 410
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=72.48 E-value=22 Score=22.57 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=19.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHh
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKH 123 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~ 123 (303)
-..|++++|+.+|..+++.+...
T Consensus 17 D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 17 DNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999987664
No 411
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=71.62 E-value=24 Score=22.63 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=19.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHh
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKH 123 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~ 123 (303)
-..|++++|+.+|.++++.+...
T Consensus 17 D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 17 DQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHhccHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999987764
No 412
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=71.43 E-value=11 Score=18.89 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+|..+-..+...|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888999999999999999987654
No 413
>KOG1920|consensus
Probab=71.23 E-value=1.2e+02 Score=30.52 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=16.1
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 179 HLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 179 ~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.-|..|. ..|+.++|+..|+.+...
T Consensus 957 ~Aal~Ye-~~GklekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 957 EAALMYE-RCGKLEKALKAYKECGDW 981 (1265)
T ss_pred HHHHHHH-HhccHHHHHHHHHHhccH
Confidence 4456665 777777777777665443
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.16 E-value=70 Score=27.84 Aligned_cols=140 Identities=16% Similarity=0.022 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN 115 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 115 (303)
.....+..+ +..++|..|...+...... . ++... ...+..+... ..++..-++.+|.+.+++
T Consensus 133 ~~~~~a~~l----~n~~~y~aA~~~l~~l~~r---l-~~~~~--~~~~~~l~~~--------y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 133 REWRRAKEL----FNRYDYGAAARILEELLRR---L-PGREE--YQRYKDLCEG--------YDAWDRFDHKEALEYLEK 194 (379)
T ss_pred HHHHHHHHH----HhcCCHHHHHHHHHHHHHh---C-Cchhh--HHHHHHHHHH--------HHHHHccCHHHHHHHHHH
Confidence 444445445 4999999999999987653 2 22111 3444555433 334778899999999998
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHH
Q psy4339 116 ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195 (303)
Q Consensus 116 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~ 195 (303)
.+..... -......+..+..+ -++...+...............+.....+..-|.=-. .+|+|+.|.
T Consensus 195 ~~~~~~~-----l~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa-~~gryddAv 261 (379)
T PF09670_consen 195 LLKRDKA-----LNQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRA-AQGRYDDAV 261 (379)
T ss_pred HHHHhhh-----hHhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHH-hcCCHHHHH
Confidence 7774221 00011111112222 2222222222222111000001222223333333333 589999999
Q ss_pred HHHHHHHHhhh
Q psy4339 196 KLYFRSIEIND 206 (303)
Q Consensus 196 ~~~~~al~~~~ 206 (303)
..+-+++++.-
T Consensus 262 arlYR~lEl~~ 272 (379)
T PF09670_consen 262 ARLYRALELLA 272 (379)
T ss_pred HHHHHHHHHHH
Confidence 99999998776
No 415
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.08 E-value=8.3 Score=30.60 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=48.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
...++.+.|.+.|.+++.+ -|.....+..+|......|+++.|...|++.+++.
T Consensus 6 ~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 5678999999999999996 46778889999999999999999999999998874
No 416
>KOG1914|consensus
Probab=68.93 E-value=93 Score=28.37 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
.++..-.++.+.+.+.. .+..-++.++-+.-.+..-...|...|.+|-+.-. +..+.-+ ...+-..
T Consensus 346 ~~~~~~~~~~~ll~~~~-------~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hhVfV---a~A~mEy- 411 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIED-------IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHHVFV---AAALMEY- 411 (656)
T ss_pred hhhhhHHHHHHHHhhhc-------cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---CcchhhH---HHHHHHH-
Confidence 45555666666666532 22223445555555556666777888877755321 1222222 2222222
Q ss_pred HHhhcCHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy4339 185 NYHMLEYHKAEKLYFRSIEINDNLKLFSASY 215 (303)
Q Consensus 185 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (303)
|.+++..-|...|+-.+...++.|.+...|
T Consensus 412 -~cskD~~~AfrIFeLGLkkf~d~p~yv~~Y 441 (656)
T KOG1914|consen 412 -YCSKDKETAFRIFELGLKKFGDSPEYVLKY 441 (656)
T ss_pred -HhcCChhHHHHHHHHHHHhcCCChHHHHHH
Confidence 368899999999999999888877654444
No 417
>KOG2581|consensus
Probab=67.96 E-value=84 Score=27.49 Aligned_cols=136 Identities=19% Similarity=0.156 Sum_probs=90.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 179 (303)
+.++++.+|...-...+.-.... ...-+.-.+.+|+-+..+|...|+...=...+..-+... ..+.+....+...+.
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL 214 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence 66789999988887766542210 000122345677788888888888666555555444432 234566666777888
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-H
Q psy4339 180 LASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-F 258 (303)
Q Consensus 180 la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~ 258 (303)
|-..|. .-+.|+.|.....++. .| +. ..+...+...+-+|.+..-+++|..|.+ +
T Consensus 215 LLr~yL-~n~lydqa~~lvsK~~--~p-------------------e~--~snne~ARY~yY~GrIkaiqldYssA~~~~ 270 (493)
T KOG2581|consen 215 LLRNYL-HNKLYDQADKLVSKSV--YP-------------------EA--ASNNEWARYLYYLGRIKAIQLDYSSALEYF 270 (493)
T ss_pred HHHHHh-hhHHHHHHHHHhhccc--Cc-------------------cc--cccHHHHHHHHHHhhHHHhhcchhHHHHHH
Confidence 888997 8899999988776653 22 11 1122456667789999999999999999 4
Q ss_pred HHHH
Q psy4339 259 TNKL 262 (303)
Q Consensus 259 ~~~~ 262 (303)
.+++
T Consensus 271 ~qa~ 274 (493)
T KOG2581|consen 271 LQAL 274 (493)
T ss_pred HHHH
Confidence 4554
No 418
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=67.90 E-value=87 Score=27.64 Aligned_cols=154 Identities=14% Similarity=0.026 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-------hHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-------FYKE 108 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-------~~~~ 108 (303)
....||... +..|+|+-|...|+.+.+-+... ......+.++-..| .+....+ .-++
T Consensus 210 q~R~LAD~a----Fml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~a----------lsl~~~~~~~~~k~~~~~ 273 (414)
T PF12739_consen 210 QMRRLADLA----FMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAA----------LSLLMQGQSISAKIRKDE 273 (414)
T ss_pred HHHHHHHHH----HHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHH----------HHHHhcCCCCcccccccc
Confidence 556788766 68999999999999887765431 11111333333333 2223333 2246
Q ss_pred HHHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH--HHh---------------c--
Q psy4339 109 AELLHQNALVLSLKHFG---ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK--EKV---------------L-- 166 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~---------------~-- 166 (303)
...+++.|+..+.+... ........+....+.++...+.+.+|...+-+..... ... +
T Consensus 274 ~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~ 353 (414)
T PF12739_consen 274 IEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYAS 353 (414)
T ss_pred HHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcc
Confidence 77777887777766211 1122344566677788888888777666555444331 010 1
Q ss_pred -CCCch--H-----HHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 167 -GKDDY--E-----VGLSV-GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 167 -~~~~~--~-----~~~~~-~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+.| . ....+ .--|.-|. ..|+...|..+|.+|+.+..
T Consensus 354 ~~~~~~~~~~~r~RK~af~~vLAg~~~~-~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 354 LRSNRPSPGLTRFRKYAFHMVLAGHRYS-KAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred cccCCCCccchhhHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhC
Confidence 00011 1 11122 22355665 78888888899888888776
No 419
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=67.82 E-value=23 Score=30.59 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=35.7
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQ----VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL 71 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~ 71 (303)
+-..|..+..+|++..++....+.|. .+.++..||+++ ..+-.+=..+|.+|-+++++.
T Consensus 326 aq~~a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~------d~eS~eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 326 AQKIAQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLY------DNESKEQEKAYKEAEKILKKA 388 (404)
T ss_dssp -STTHHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-------SSHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhccc------ccchHHHHHHHHHHHHHHHHH
Confidence 33567777888888777765555553 578888888755 233334466777777766553
No 420
>KOG4279|consensus
Probab=67.18 E-value=37 Score=32.10 Aligned_cols=140 Identities=10% Similarity=0.054 Sum_probs=73.5
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
.-|+-++|+...-.+++. -|+..| ..+..-|.+|..|-+. .-|...+..+.|..||++|.+....
T Consensus 255 r~GDRakAL~~~l~lve~----eg~vap---Dm~Cl~GRIYKDmF~~-S~ytDa~s~~~a~~WyrkaFeveP~------- 319 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEK----EGPVAP---DMYCLCGRIYKDMFIA-SNYTDAESLNHAIEWYRKAFEVEPL------- 319 (1226)
T ss_pred CCccHHHHHHHHHHHHHh----cCCCCC---ceeeeechhhhhhhhc-cCCcchhhHHHHHHHHHHHhccCch-------
Confidence 347777887776666653 223333 4444556666544333 4557778889999999999986221
Q ss_pred HHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH--HhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQK-FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN--YHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~~g~~~~A~~~~~~al~~~~ 206 (303)
.. +=.|+|..+...|+ |+...++-.-++.+..-...........-|...|..+. --.+++.+|+...+...++.+
T Consensus 320 ~~--sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 320 EY--SGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred hh--ccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 11 12356666665554 45555544444443221111111222222333332221 024677777777777666554
No 421
>PF13041 PPR_2: PPR repeat family
Probab=67.04 E-value=18 Score=20.54 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.+++.+-..|. +.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~-~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYC-KAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHH-HCcCHHHHHHHHHHHHHc
Confidence 46777888887 999999999999998753
No 422
>KOG2396|consensus
Probab=67.03 E-value=97 Score=27.91 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHhhhhhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE-YHKAEKLYFRSIEINDNLKL 210 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 210 (303)
...+.+......+.+.+.+--..|.+++.. ||..+..|..-|.-. |..+. .+.|..++.+++...|+.|.
T Consensus 105 ~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 105 VKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--------HPNNPDLWIYAAKWE-FEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCchhHHhhhhhH-HhhccchHHHHHHHHHHhhcCCCChH
Confidence 345556666666666688888888888764 244444455444444 35555 89999999999999999999
Q ss_pred hhhhhhhhhhhH
Q psy4339 211 FSASYSGLEYHY 222 (303)
Q Consensus 211 ~~~~~~~l~~~~ 222 (303)
+-..|.+++-.+
T Consensus 176 Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 176 LWKEYFRMELMY 187 (568)
T ss_pred HHHHHHHHHHHH
Confidence 888888876444
No 423
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.90 E-value=58 Score=24.88 Aligned_cols=129 Identities=12% Similarity=0.012 Sum_probs=85.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCC---------------cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLP---------------ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+..+.-..+-+.|..++++...... ...|.+ +....| .+....|+...|+..|
T Consensus 50 w~~s~as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvL--A~mr~a----------t~~a~kgdta~AV~aF 117 (221)
T COG4649 50 WQTSRASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVL--ARMRAA----------TLLAQKGDTAAAVAAF 117 (221)
T ss_pred hcccccccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHH--HHHHHH----------HHHhhcccHHHHHHHH
Confidence 3666666777777777776544211 112222 223334 5557899999999999
Q ss_pred HHHHHHHHHhhCCCcHHH--HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 114 QNALVLSLKHFGENNVQT--AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.++-.-. ..|.. -.+...-|..+...|.|++-..-. +-..++.+|....+...||..-. +.|++
T Consensus 118 deia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~-kagd~ 183 (221)
T COG4649 118 DEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAY-KAGDF 183 (221)
T ss_pred HHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHH-hccch
Confidence 8866531 22332 234556677888888887654433 33345667877888889999995 99999
Q ss_pred HHHHHHHHHHHH
Q psy4339 192 HKAEKLYFRSIE 203 (303)
Q Consensus 192 ~~A~~~~~~al~ 203 (303)
.+|..+|.+...
T Consensus 184 a~A~~~F~qia~ 195 (221)
T COG4649 184 AKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHHc
Confidence 999999998765
No 424
>KOG1258|consensus
Probab=64.63 E-value=1.2e+02 Score=27.94 Aligned_cols=108 Identities=11% Similarity=-0.006 Sum_probs=64.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE-VGLSVGH 179 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~ 179 (303)
...|+++.|...+++...- -|....+-..-+.+...+|+.+.+.. ....+... ..|..++. ....+..
T Consensus 377 e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~--~~~~~~~~i~~~l~~~ 445 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSI--YEGKENNGILEKLYVK 445 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh--cccccCcchhHHHHHH
Confidence 4566777777777776653 14444444455566667777777764 11222111 11222232 3344556
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy4339 180 LASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLE 219 (303)
Q Consensus 180 la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~ 219 (303)
.+.....-.++.+.|...+.+++++.+++..+...+.++.
T Consensus 446 ~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 446 FARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 6665543567889999999999999997766666655553
No 425
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=64.43 E-value=90 Score=26.61 Aligned_cols=125 Identities=14% Similarity=-0.153 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHh---hhhHHHHHHHHHHHHHHHHHhh------------CCCcHHHHHHHHHHHHHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELIS---VQFYKEAELLHQNALVLSLKHF------------GENNVQTAKHYGNIGRLY 142 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~~~la~~~ 142 (303)
+.+.+++|+|.++..++. .... ......|..+|++|--+++-.. ..-++....++..+....
T Consensus 109 E~~~vLfn~aa~~s~~a~---~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAq 185 (345)
T cd09034 109 ELLSILFNLAALASQLAN---EKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQ 185 (345)
T ss_pred HHHHHHHHHHHHHHHHHH---hccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHH
Confidence 366778888877765552 2122 3567888888888877654331 111233344444433322
Q ss_pred HHhhc------------------HHHHHHHHHHHHHHHHHhcCC---Cch-------------HHHHHHHHHHHHHHHhh
Q psy4339 143 QSMQK------------------FDEAERMQLKAIAIKEKVLGK---DDY-------------EVGLSVGHLASLYNYHM 188 (303)
Q Consensus 143 ~~~~~------------------~~~A~~~~~~al~~~~~~~~~---~~~-------------~~~~~~~~la~~~~~~~ 188 (303)
.+.-- --++..+|++|.+........ ..+ ..+.+++..|.... ..
T Consensus 186 AQe~~~~ka~~~~~~~~~liakLa~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~-e~ 264 (345)
T cd09034 186 AQECFLLKAEEDKKAKLSLLARLACEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLD-EA 264 (345)
T ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc
Confidence 22111 124566777777665432110 111 12344556666665 66
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
+++.+|+.+++.|.....
T Consensus 265 ~~~G~aia~L~~A~~~~~ 282 (345)
T cd09034 265 NKIGEAIARLQAALELLK 282 (345)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 788888888888887665
No 426
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=64.32 E-value=26 Score=26.76 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=32.4
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+...|.....+.++..-|. .+|+++-|....+++++-..
T Consensus 133 ~~E~~~rl~tL~nlv~q~~-~q~r~evav~~~KqalEdl~ 171 (181)
T PF09311_consen 133 GYEIPARLRTLHNLVIQYE-SQGRYEVAVPLCKQALEDLE 171 (181)
T ss_dssp -TTS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHH
Confidence 3456778889999999998 99999999999999998777
No 427
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=63.96 E-value=18 Score=18.43 Aligned_cols=32 Identities=13% Similarity=-0.051 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQ 66 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~ 66 (303)
.+...||.++..=.....+..+|..++++|.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 45677886553100012388899999988764
No 428
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=63.48 E-value=33 Score=29.68 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhCCcchhh----hHHHHHHHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPENHLL----LTSAHRVKALI 89 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~ 89 (303)
.|..+..+|++.+++....+.|. ++.++..+|.+
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcc
Confidence 46777777777777665455554 45556666633
No 429
>KOG2908|consensus
Probab=62.27 E-value=99 Score=26.32 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=49.6
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 141 LYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 141 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+..+.++.++|++++++.++-.... ..+..+......+|.++. ..|+..++.+.+...-+...
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~--~e~~av~~~~t~~~r~~L-~i~DLk~~kk~ldd~~~~ld 146 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY--KEPDAVIYILTEIARLKL-EINDLKEIKKLLDDLKSMLD 146 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHh
Confidence 3445668999999999988766553 223457778889999998 99999999999988777655
No 430
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.26 E-value=39 Score=21.64 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
+...|.-+-..|++++|+.+|.++++.+....
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34445556667999999999999999876643
No 431
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.65 E-value=92 Score=25.76 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=51.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+++|.+++.+..+-...-++. .|.+..... -.|.+.|++....+.-..-+.. +++
T Consensus 94 AEmnrWreVLsWvlqyYq~pEkl----PpkIleLCI-------------LLysKv~Ep~amlev~~~WL~~------p~N 150 (309)
T PF07163_consen 94 AEMNRWREVLSWVLQYYQVPEKL----PPKILELCI-------------LLYSKVQEPAAMLEVASAWLQD------PSN 150 (309)
T ss_pred HHHhhHHHHHHHHHHHhcCcccC----CHHHHHHHH-------------HHHHHhcCHHHHHHHHHHHHhC------ccc
Confidence 57899999998887766553332 232222211 4457888888888777776663 222
Q ss_pred HHHHHHHHHHHHHH-----HHhhcHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLY-----QSMQKFDEAERMQL 156 (303)
Q Consensus 129 ~~~~~~~~~la~~~-----~~~~~~~~A~~~~~ 156 (303)
..... |..++..| .=+|.+++|+++..
T Consensus 151 q~lp~-y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 151 QSLPE-YGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred CCchh-hHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 22211 44455544 45799999998873
No 432
>KOG2422|consensus
Probab=59.81 E-value=1.4e+02 Score=27.42 Aligned_cols=178 Identities=10% Similarity=-0.031 Sum_probs=97.2
Q ss_pred hHhHHHHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc--------
Q psy4339 7 LLKNLSLCSQLALKLKQV----LFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE-------- 74 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~----~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------- 74 (303)
+++++...|.-|..++.- .+-.++|....++..++.++ ..+|+.+-|-+..++++=.+...+-+
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~----r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIF----RFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHH----HHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 455666666666665431 11235688889999999766 79999999999999999777665221
Q ss_pred -----chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH
Q psy4339 75 -----NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD 149 (303)
Q Consensus 75 -----~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 149 (303)
.+|..-..|..+-.-. ......|.+..|.++++-.+.+-. ..+|.- +..-+-.......+|.
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m-------~~l~~RGC~rTA~E~cKlllsLdp----~eDPl~--~l~~ID~~ALrareYq 395 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYM-------QSLAQRGCWRTALEWCKLLLSLDP----SEDPLG--ILYLIDIYALRAREYQ 395 (665)
T ss_pred ccCcccchhhHHHHHHHHHHH-------HHHHhcCChHHHHHHHHHHhhcCC----cCCchh--HHHHHHHHHHHHHhHH
Confidence 1122111111111111 334678899999999988777521 113321 2222222233344444
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHhhh
Q psy4339 150 EAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE---YHKAEKLYFRSIEIND 206 (303)
Q Consensus 150 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~---~~~A~~~~~~al~~~~ 206 (303)
==++.++..-.. .+. ..-|..+. -..+|..|. .... -..|...+.+|+.+.|
T Consensus 396 wiI~~~~~~e~~-n~l--~~~PN~~y-S~AlA~f~l-~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 396 WIIELSNEPENM-NKL--SQLPNFGY-SLALARFFL-RKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHhh-ccH--hhcCCchH-HHHHHHHHH-hcCChhhHHHHHHHHHHHHHhCc
Confidence 444444332111 111 11132221 134555554 4443 4578888888888877
No 433
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=57.46 E-value=65 Score=28.84 Aligned_cols=86 Identities=9% Similarity=-0.015 Sum_probs=51.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|+.-.|-+-...++.-+ +..|.. ....+.+...+|.|+.|...+..+-.+. |..+ .+...+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-----~~~p~~---i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~----~~~~~~ 363 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-----QQDPVL---IQLRSVIFSHLGYYEQAYQDISDVEKII----GTTD----STLRCR 363 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-----CCCchh---hHHHHHHHHHhhhHHHHHHHhhchhhhh----cCCc----hHHHHH
Confidence 34555555555555555532 223333 3456888899999999998887665443 2211 122333
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~ 203 (303)
-.... .+|++++|.....-.+.
T Consensus 364 ~r~~~-~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 364 LRSLH-GLARWREALSTAEMMLS 385 (831)
T ss_pred HHhhh-chhhHHHHHHHHHHHhc
Confidence 44453 78899988877665554
No 434
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=56.68 E-value=93 Score=25.53 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=41.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..+...++++.|..+..+.+.+. +++| .-...-|.+|.++|.+.-|++-++..++.+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~-----P~dp---~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLN-----PEDP---YEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhC-----CCCh---hhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 66788888888888888888752 3333 224467888889999888888887766654
No 435
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=56.61 E-value=48 Score=20.93 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
..-|.-+-..|++++|+.+|.++++.+....
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3344555557999999999999999877654
No 436
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=55.93 E-value=30 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..+|..+...|++++|..+|-+|+.++
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 468888899999999999999998876
No 437
>KOG1497|consensus
Probab=55.91 E-value=1.3e+02 Score=25.53 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+.+...+| .+|...++|..|...+.- +..-.-....+.......+..+|..|...++..+|..+..++
T Consensus 102 v~~irl~LA----------siYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 102 VASIRLHLA----------SIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHH----------HHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 556666677 677888899888776643 211000000112234567889999999999999999999887
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
--+.... .+..........-|+++. ..++|-+|-..|.+..
T Consensus 171 Sil~a~~--~Ne~Lqie~kvc~ARvlD-~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 171 SILQAES--SNEQLQIEYKVCYARVLD-YKRKFLEAAQRYYELS 211 (399)
T ss_pred HHhhhcc--cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4333221 222222333445577776 6788877776665543
No 438
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=54.99 E-value=1.1e+02 Score=24.52 Aligned_cols=102 Identities=15% Similarity=0.003 Sum_probs=58.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCC---CcH-HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH--HH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGE---NNV-QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE--VG 174 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~---~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~ 174 (303)
...|+|+.|+++..-|++.-...... +.| .++.-...-+......|+.-+. .++.....+... .+-|+ .+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~---~dmpd~vrA 169 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTE---WDMPDEVRA 169 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhc---CCCChHHHH
Confidence 68899999999999999863322100 111 2233333444444455542221 123333333322 23333 45
Q ss_pred HHHHHHHHHHH--------HhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYN--------YHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~--------~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+-..|..+. ...++...|..++++|+.+.+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 55666777762 034678899999999999887
No 439
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=54.34 E-value=53 Score=20.76 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
.-|.-.-..|++++|+.+|.++++.+....
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334445567999999999999998876643
No 440
>KOG4322|consensus
Probab=53.31 E-value=1.6e+02 Score=26.01 Aligned_cols=105 Identities=18% Similarity=0.022 Sum_probs=68.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQ-----TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
..+...|..+.|...+..++....-..+-+... .+.++...+..+ ...+.+.+.+++++|-.++.+. +-+..
T Consensus 361 l~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~f~kL--~~he~ 437 (482)
T KOG4322|consen 361 LEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSIFYKL--GCHEK 437 (482)
T ss_pred HHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHHHHHc--cchHH
Confidence 334667888888888888887654322211110 111111122222 5667888889999998888775 55667
Q ss_pred HHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHhhh
Q psy4339 173 VGLSVGHLASLYNYHMLEYH---KAEKLYFRSIEIND 206 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~---~A~~~~~~al~~~~ 206 (303)
+..+.+..+..|. ..|+.+ ++-..|++...-.|
T Consensus 438 ildv~yf~A~~yn-~lGd~~eRn~~AslFrk~~~~le 473 (482)
T KOG4322|consen 438 ILDVTYFSAYQYN-HLGDSPERNLLASLFRKAWRYLE 473 (482)
T ss_pred HHHHHHHHHHHHH-hhcCchHHHHHHHHHHHHHHhcC
Confidence 8889999999998 999865 45666777665554
No 441
>KOG0890|consensus
Probab=52.69 E-value=3.6e+02 Score=29.79 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...++.+|.+.|.+....|+++.|-.+.-+|.+.. ...+....|..++ .+|+-..|+..+++.+....
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLW-QTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhhc
Confidence 45788999999999999999999999998887642 2356788999997 99999999999999997655
No 442
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=52.05 E-value=1.8e+02 Score=26.22 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=59.4
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..|+...|-.-...++.-. +..|..... .+ .+....|.|+.|......+-.+.- ..+.
T Consensus 301 ~~gd~~aas~~~~~~lr~~-----~~~p~~i~l---~~----------~i~~~lg~ye~~~~~~s~~~~~~~----s~~~ 358 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ-----QQDPVLIQL---RS----------VIFSHLGYYEQAYQDISDVEKIIG----TTDS 358 (831)
T ss_pred hccCHHHHHHHHHHHHHhC-----CCCchhhHH---HH----------HHHHHhhhHHHHHHHhhchhhhhc----CCch
Confidence 5677777766665555442 233443322 23 344677888888777655544321 1111
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+..-+-.....+|++++|...-.-.+.- . -..|++.. --|..-. .+|-+++|..++++.+.+.+
T Consensus 359 ----~~~~~~r~~~~l~r~~~a~s~a~~~l~~--e---ie~~ei~~---iaa~sa~-~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 359 ----TLRCRLRSLHGLARWREALSTAEMMLSN--E---IEDEEVLT---VAAGSAD-ALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred ----HHHHHHHhhhchhhHHHHHHHHHHHhcc--c---cCChhhee---eecccHH-HHhHHHHHHHHHHHHhccCC
Confidence 1112233345566666666554433211 0 11233221 1122222 45566777777777766655
No 443
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=51.24 E-value=60 Score=20.46 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhC
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLL 72 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~ 72 (303)
...|++++|+.+|.++++.+....
T Consensus 19 d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 19 DEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999987754
No 444
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=50.63 E-value=75 Score=26.06 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.....++=..+...++++.|..+.++.+.+. +.+| .-+.-.|.+|. .+|-+.-|+.-+...+...|
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~-----P~dp---~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLN-----PEDP---YEIRDRGLIYA-QLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhC-----CCCh---hhccCcHHHHH-hcCCchhhHHHHHHHHHhCC
Confidence 3445566666677777777777777766553 2222 23445677776 77777777777777666666
No 445
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=50.40 E-value=2.1e+02 Score=26.45 Aligned_cols=108 Identities=17% Similarity=0.039 Sum_probs=63.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhH
Q psy4339 27 GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFY 106 (303)
Q Consensus 27 ~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~ 106 (303)
++.+|....... +. +++ ...++...+.-....++.. +|..+.+..++|... ...|..
T Consensus 61 ~~~~~~llla~~-ls-i~~---~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~al----------e~~~~~ 117 (620)
T COG3914 61 NDVNPELLLAAF-LS-ILL---APLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAAL----------ELDGLQ 117 (620)
T ss_pred CCCCHHHHHHHH-HH-hhc---cccccchhHHHHHhhhHhc--------CcccchHHHHHHHHH----------HHhhhH
Confidence 345566544444 55 343 5677776666666665554 566778888888443 334444
Q ss_pred HH-HHHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 107 KE-AELLHQNALVLSLKHFGENNVQ---TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 107 ~~-A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.. +..+.+.+..... +... ....+..+|.....+|+..++....+++.++.
T Consensus 118 ~~~~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 118 FLALADISEIAEWLSP-----DNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred HHHHHHHHHHHHhcCc-----chHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 44 4444444555321 1111 11122336888888888888888888887765
No 446
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.65 E-value=93 Score=22.17 Aligned_cols=79 Identities=18% Similarity=0.120 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 109 AELLHQNALVLSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 109 A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
=...+++++..+... .-.++|.....+...+... +++.+.|.-... +-.| ...+..+...|..+. .
T Consensus 45 L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~---~~IG---~~~AlfYe~~A~~lE-~ 111 (125)
T smart00777 45 LLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYS---KGIG---TKLALFYEEWAQLLE-A 111 (125)
T ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHH---CCcc---hhhHHHHHHHHHHHH-H
Confidence 345555666554332 1245677777777777653 334555544332 1112 445667788999997 9
Q ss_pred hcCHHHHHHHHHH
Q psy4339 188 MLEYHKAEKLYFR 200 (303)
Q Consensus 188 ~g~~~~A~~~~~~ 200 (303)
.|++.+|.+.|+.
T Consensus 112 ~g~~~~A~~iy~~ 124 (125)
T smart00777 112 AGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHc
Confidence 9999999998874
No 447
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=49.03 E-value=1.8e+02 Score=25.34 Aligned_cols=56 Identities=16% Similarity=-0.010 Sum_probs=39.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH--HHhhcHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLY--QSMQKFDEAERMQL 156 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~ 156 (303)
....+.++|..|...|...+... ..+........+..++.+| +..-++++|.++++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 45588999999999999988652 1122233345566666665 55677889999998
No 448
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=48.87 E-value=1.8e+02 Score=25.23 Aligned_cols=100 Identities=13% Similarity=-0.041 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCC-CcHHHH----HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch-----H
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGE-NNVQTA----KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY-----E 172 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----~ 172 (303)
+...+++-....++........++ ..|..- -..+.+-.+|.++++++-+...++.. +. ..+++.+ .
T Consensus 143 ~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~-~~---vs~~Di~~~~~sq 218 (413)
T COG5600 143 QDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKAS-KE---VSMPDISEYQKSQ 218 (413)
T ss_pred HhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc-cc---ccccccchhhhcc
Confidence 445555555665555554322222 112221 22345667889999998877766432 22 2234443 2
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
+....+.+|.+|. -..++.+|...+++|+...+.
T Consensus 219 ~v~f~YYLG~~~l-~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 219 VVVFHYYLGIYYL-LNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred eeehhhHHHHHHH-HHHhHHHHHHHHHHHHHhChh
Confidence 3445788999997 899999999999999988774
No 449
>KOG1920|consensus
Probab=48.64 E-value=3.1e+02 Score=27.87 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHH------HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAI------AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
+..-|..|...|+.++|++.|+.+. .+..+...+. ......-..|+.-+. .++++-+|-....+.+.
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~-e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLV-EQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH-HcccchhHHHHHHHHhc
Confidence 3456778888888888888886653 3333321111 122222245555555 67777776666655543
No 450
>KOG0276|consensus
Probab=47.63 E-value=85 Score=29.02 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
-|..||.+.. ..|++..|.+++.++.....
T Consensus 668 Kw~~Lg~~al-~~~~l~lA~EC~~~a~d~~~ 697 (794)
T KOG0276|consen 668 KWRQLGDAAL-SAGELPLASECFLRARDLGS 697 (794)
T ss_pred HHHHHHHHHh-hcccchhHHHHHHhhcchhh
Confidence 3678999998 99999999999999876544
No 451
>KOG0546|consensus
Probab=47.56 E-value=35 Score=28.98 Aligned_cols=100 Identities=16% Similarity=0.050 Sum_probs=74.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhC------CC-----cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFG------EN-----NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
......++++.|..-+.+++........ ++ .......+.+++.+-...+.+..|......+++
T Consensus 230 ~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~------ 303 (372)
T KOG0546|consen 230 NKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR------ 303 (372)
T ss_pred hhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc------
Confidence 4557889999999999999887652100 01 112234566788888888998888877776665
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+....+++..+..+. ...++++|...++.+....|
T Consensus 304 --~~~s~tka~~Rr~~~~~-~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 304 --DERSKTKAHYRRGQAYK-LLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred --cChhhCcHHHHHHhHHH-hhhchhhhHHHHHHhhccCc
Confidence 23555677899999997 99999999999999988777
No 452
>KOG2709|consensus
Probab=47.06 E-value=80 Score=27.63 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+..+.|.+|-..+++++|+.+|++++.+...
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 34568899999999999999999999998765
No 453
>KOG2908|consensus
Probab=46.86 E-value=1.8e+02 Score=24.80 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=65.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...++.++|++++++..+-..... .+..+..+...+|.++...|+..++.+.+.+.-.......+ -++.+-..++.+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~--e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~-v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYK--EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDG-VTSNVHSSFYSL 162 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC-CChhhhhhHHHH
Confidence 566789999999999998776542 22345667788999999999999999999988777665432 335566677788
Q ss_pred HHHHHHhhcCHHHH
Q psy4339 181 ASLYNYHMLEYHKA 194 (303)
Q Consensus 181 a~~~~~~~g~~~~A 194 (303)
+.-|.-..|++...
T Consensus 163 ssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 163 SSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHhHHHH
Confidence 77763145555543
No 454
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=43.58 E-value=1.7e+02 Score=23.45 Aligned_cols=104 Identities=17% Similarity=0.136 Sum_probs=53.9
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCc---chhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPE---NHLL-LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF 124 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 124 (303)
+..|+|+.|+++..-|++.--...+. +-|. ++.....-+ ..-...|..-+. ...+....+... .
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A----------~~~~~ag~~~e~-~~~~~~~~l~~~-~ 161 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAA----------LKAASAGESVEP-YFLRVFLDLTTE-W 161 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHH----------HHHHHcCCCCCh-HHHHHHHHHHhc-C
Confidence 47899999999999998863222111 1111 111111111 111333331111 112222222221 1
Q ss_pred CCCcHHHHHHHHHHHHHHH---------HhhcHHHHHHHHHHHHHHHHH
Q psy4339 125 GENNVQTAKHYGNIGRLYQ---------SMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 125 ~~~~~~~~~~~~~la~~~~---------~~~~~~~A~~~~~~al~~~~~ 164 (303)
.-.+...+..+-..|..+. ..++...|+.++++|+.+..+
T Consensus 162 dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 1223344566667777773 556888999999999988533
No 455
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=43.49 E-value=49 Score=17.15 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=17.3
Q ss_pred HHHHHH--HHHHHh-----hcHHHHHHHHHHHHH
Q psy4339 134 HYGNIG--RLYQSM-----QKFDEAERMQLKAIA 160 (303)
Q Consensus 134 ~~~~la--~~~~~~-----~~~~~A~~~~~~al~ 160 (303)
+...+| .+|..- .++++|..++++|.+
T Consensus 3 A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 3 AQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 455677 433332 257888988888764
No 456
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=43.33 E-value=1.1e+02 Score=21.03 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy4339 13 LCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEK 63 (303)
Q Consensus 13 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~ 63 (303)
.+.++|..|..-+-.......+..+..+. .+ .++|+|++|....+.
T Consensus 19 HcHqEA~tIAdwL~~~~~~~E~v~lIRls-SL----mNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGESEEAVQLIRLS-SL----MNRGDYQSALQLGNK 64 (115)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHH-HH----HccchHHHHHHhcCC
Confidence 35667777766655444335566777777 45 599999998876653
No 457
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=42.70 E-value=85 Score=19.70 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
.-|.-.-..|++++|+.+|..+++.+....
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 334444556999999999999999877654
No 458
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.40 E-value=1.5e+02 Score=22.63 Aligned_cols=56 Identities=9% Similarity=-0.139 Sum_probs=38.9
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 144 SMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 144 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...+.+......+.+.+..+.. | ...++.+++.++. ..|+.++|.....++..+.|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~-----P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRR-----P-DPNVYQRYALALA-LLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhC-----C-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444331 3 2456788899997 99999999999999998887
No 459
>KOG3677|consensus
Probab=41.74 E-value=2.5e+02 Score=24.84 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=51.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+.-.|++.. -.+.+++..+..-..-|....+ +.+|-.|..+++|.+|++.|.+++-..++. -...
T Consensus 243 R~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niLlyIqrt--------ks~~ 309 (525)
T KOG3677|consen 243 RMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNILLYIQRT--------KSMF 309 (525)
T ss_pred HHHHHhhhhHh----hhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hhhh
Confidence 56666777443 2233333322111111222222 679999999999999999999988765442 1112
Q ss_pred HHHHHHHHHhhc-CHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHML-EYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g-~~~~A~~~~~~al~~~~ 206 (303)
...+..|. ..+ ..+.-..++.-++.+.|
T Consensus 310 ~~~~y~~d-~inKq~eqm~~llai~l~~yP 338 (525)
T KOG3677|consen 310 SRTTYQYD-MINKQNEQMHHLLAICLSMYP 338 (525)
T ss_pred cchhhhHh-hhhhhHHHHHHHHHHHHHhCc
Confidence 23333443 333 34444555555666666
No 460
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.68 E-value=92 Score=19.82 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=19.4
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 143 QSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 143 ~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
-..|+|++|..+|..+++.+....
T Consensus 17 d~~~~y~eA~~~Y~~~i~~~~~~~ 40 (75)
T cd02677 17 EEEGDYEAAFEFYRAGVDLLLKGV 40 (75)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHh
Confidence 334899999999999999876643
No 461
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=40.88 E-value=1.4e+02 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.+..+..+|.+|. +.|+..+|-+++++|.+-
T Consensus 119 ~p~~L~kia~Ay~-klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 119 NPEFLVKIANAYK-KLGNTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH-HhcchhhHHHHHHHHHHh
Confidence 3456789999998 999999999999998764
No 462
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=40.17 E-value=1.5e+02 Score=21.96 Aligned_cols=105 Identities=10% Similarity=-0.131 Sum_probs=62.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhh------C-----------------------CC--cHHHHHHHHHHHHHHHHhhc
Q psy4339 99 ELISVQFYKEAELLHQNALVLSLKHF------G-----------------------EN--NVQTAKHYGNIGRLYQSMQK 147 (303)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~~~~~------~-----------------------~~--~~~~~~~~~~la~~~~~~~~ 147 (303)
.....|+.++|...+.+|...+.... . .+ ..........-++-....|+
T Consensus 11 ~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l~~g~ 90 (155)
T PF10938_consen 11 LALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELLKKGD 90 (155)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHHhCCC
Confidence 33678999999999999888765320 0 00 12234456677888888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 148 FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 148 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
...|.+.++-+-.-..-..-.-+-.....-...+..+. ..|++.+|...+..++.-
T Consensus 91 ~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll-~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 91 KQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALL-DEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHH-HCCCHHHHHHHHHHHhcC
Confidence 99998887654210000000001122233456777787 899999999999998853
No 463
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=40.13 E-value=1.5e+02 Score=21.86 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=24.2
Q ss_pred HHHHHHHHHhh-cHHHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQ-KFDEAERMQLKAIAIK 162 (303)
Q Consensus 136 ~~la~~~~~~~-~~~~A~~~~~~al~~~ 162 (303)
..+|.-+...| +.++|..+|-+|+.++
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc 121 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVY 121 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 46899999999 9999999999999886
No 464
>KOG4322|consensus
Probab=40.11 E-value=2.7e+02 Score=24.74 Aligned_cols=104 Identities=15% Similarity=-0.074 Sum_probs=73.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.++...+++..|...+.+..-...+ +.+......+...++.++.+-+..-.+..+.-.++....+. ..+...+..-
T Consensus 281 ~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey--~ldyl~a~~~ 356 (482)
T KOG4322|consen 281 HILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY--SLDYLEANEN 356 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh--ccchhhhhch
Confidence 5557788888888888776654432 23344566777788888887777778888877777665543 2223344555
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+++..+. ..|..+.|...+..++....
T Consensus 357 L~LAl~~L-~LG~pk~Al~lLh~a~h~Il 384 (482)
T KOG4322|consen 357 LDLALEHL-ALGSPKAALPLLHTAVHLIL 384 (482)
T ss_pred HHHHHHHH-HcCChHHHHHHHHhhhhHHH
Confidence 67888887 89999999999999987655
No 465
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=39.98 E-value=64 Score=22.82 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
..+|..+. ..|++++|..+|-+|+..+++
T Consensus 67 V~lGE~L~-~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLL-AQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHH-HTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHhCCC
Confidence 46788887 899999999999999999883
No 466
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.37 E-value=1e+02 Score=19.60 Aligned_cols=28 Identities=11% Similarity=-0.089 Sum_probs=21.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 139 GRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 139 a~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
|.-.-..|++++|+.+|..+++.+....
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3444556899999999999998876643
No 467
>KOG1914|consensus
Probab=38.70 E-value=3.2e+02 Score=25.19 Aligned_cols=88 Identities=15% Similarity=0.048 Sum_probs=49.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
.+..-...|...|.+|-+.-. .+....+...+- =|.-.++..-|.+.|+-.+.-. ++.|..... .
T Consensus 377 rR~eGlkaaR~iF~kaR~~~r------~~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf-----~d~p~yv~~---Y 441 (656)
T KOG1914|consen 377 RRAEGLKAARKIFKKAREDKR------TRHHVFVAAALM-EYYCSKDKETAFRIFELGLKKF-----GDSPEYVLK---Y 441 (656)
T ss_pred HHhhhHHHHHHHHHHHhhccC------CcchhhHHHHHH-HHHhcCChhHHHHHHHHHHHhc-----CCChHHHHH---H
Confidence 444455666666766665311 111111122222 2344688888888888777654 445554432 2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
...+. .+++-..|..+|++++.-
T Consensus 442 ldfL~-~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 442 LDFLS-HLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHH-HhCcchhHHHHHHHHHhc
Confidence 23344 677777888888887765
No 468
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=38.52 E-value=67 Score=22.31 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+..+...|..|...|+.+.|--+|-+.+.+.+..
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki 71 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI 71 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 4556678999999999999999999999998554
No 469
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=37.64 E-value=3.1e+02 Score=24.69 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=42.2
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 139 GRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 139 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
|..+..+|+|.++.-+-.-..++. | ...++.-+|.+.. ...+|++|..++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~ia--------P-S~~~~RLlGl~l~-e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIA--------P-SPQAYRLLGLCLM-ENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhC--------C-cHHHHHHHHHHHH-HHhhHHHHHHHHHh
Confidence 566788999999988877766654 4 4567889999996 99999999999865
No 470
>KOG2709|consensus
Probab=37.34 E-value=2.2e+02 Score=25.09 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+..++|.+|. .++++++|+.+|++++.+..
T Consensus 22 A~~~V~~gl~~d-E~~~~e~a~~~Ye~gl~~i~ 53 (560)
T KOG2709|consen 22 AYASVEQGLCYD-EVNDWENALAMYEKGLNLIV 53 (560)
T ss_pred HHHHHHhhcchh-hhcCHHHHHHHHHHHHHHHH
Confidence 345678899998 99999999999999998876
No 471
>KOG0739|consensus
Probab=37.15 E-value=2.6e+02 Score=23.69 Aligned_cols=19 Identities=47% Similarity=0.396 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSL 121 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~ 121 (303)
.++|++|..+|+.+++.+.
T Consensus 23 a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 23 AKNYEEALRLYQNALEYFL 41 (439)
T ss_pred hhchHHHHHHHHHHHHHHH
Confidence 4566677777766666543
No 472
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=35.47 E-value=2e+02 Score=21.82 Aligned_cols=96 Identities=15% Similarity=-0.015 Sum_probs=60.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|.|.+|.+.+.+.++. .+..+...+|..++.|.....+-.--..--++..+...-...+..|-.+.+-...
T Consensus 104 is~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~k 177 (220)
T PF10858_consen 104 ISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIK 177 (220)
T ss_pred HhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHH
Confidence 5678999999999998886 3456778889999999887654322222222222222222334445555444444
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~ 203 (303)
|..-. +.|.-.+|+..++..+.
T Consensus 178 aiwdi-k~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 178 AIWDI-KNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHHH-HcCCcHHHHHHHHHHHh
Confidence 44444 67888899999887764
No 473
>KOG2034|consensus
Probab=35.31 E-value=1.3e+02 Score=29.24 Aligned_cols=56 Identities=5% Similarity=-0.003 Sum_probs=40.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+|.+.|+|++|+++.+..- ...-..+..-|..+...++|..|-++|-+..+..+.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p-----------~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRP-----------DALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHhcchHHHHHHhccCCH-----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 78899999999988776431 122345667888888888999888888776555443
No 474
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=34.12 E-value=1.8e+02 Score=20.97 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=20.4
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 138 IGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 138 la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
.|......++++++.+.+.+|+++....
T Consensus 37 ~A~~aie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 37 RAKEAIEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4555666778888888888888877543
No 475
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=34.04 E-value=3e+02 Score=23.59 Aligned_cols=125 Identities=14% Similarity=-0.082 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC---------C---C-----cHHHHHHHHHHHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG---------E---N-----NVQTAKHYGNIGR 140 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~---~-----~~~~~~~~~~la~ 140 (303)
+.+.+++++|.++..++. ..........|..+|++|--+++-... + + ++....++..+..
T Consensus 111 E~~~vLfn~aa~~s~~A~---~~~~~e~~K~A~~~l~~AAG~f~~l~~~~l~~~~~~~s~~~~~~Dl~~~~~~aL~~l~L 187 (346)
T cd09247 111 ELGMVLFLYGAALRERAS---EVLPTEDFKEAATHLRRAAGVFEFLAHDELPRLRGALSADERPPECTPSLALAMSLLCL 187 (346)
T ss_pred HHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCcccCHHHHHHHHHHHH
Confidence 366777888877766552 212224678888888888776643210 0 1 2233334433332
Q ss_pred HHHHh-----------------hcHHHHHHHHHHHHHHHHHhcCC---Cch------------HHHHHHHHHHHHHHHhh
Q psy4339 141 LYQSM-----------------QKFDEAERMQLKAIAIKEKVLGK---DDY------------EVGLSVGHLASLYNYHM 188 (303)
Q Consensus 141 ~~~~~-----------------~~~~~A~~~~~~al~~~~~~~~~---~~~------------~~~~~~~~la~~~~~~~ 188 (303)
...+. +---++.++|++|........+. -.+ ..+.+++..|.... ..
T Consensus 188 AqAQe~~~~KAi~~~~~~sliAKLa~~~~~~y~~A~~~l~~~~~~~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~-~~ 266 (346)
T cd09247 188 AEAQAVTARKAEEKGTSPSLLAKLHYGATQFLEEAKNVLRSLATDLKDLDPRFLRFISSCIALHEARSQLYLARRLK-EA 266 (346)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHccCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 22111 11224556666666655432110 011 12345566677776 77
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
+++.+|+.+++.|.....
T Consensus 267 ~k~GeaIa~L~~A~~~l~ 284 (346)
T cd09247 267 GHIGVAVGVLREALRNLK 284 (346)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 889999999999988654
No 476
>KOG3024|consensus
Probab=33.84 E-value=2.8e+02 Score=23.11 Aligned_cols=22 Identities=14% Similarity=-0.136 Sum_probs=14.4
Q ss_pred HHHHHhHHHHHHhhhcHHHHHH
Q psy4339 236 EYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+..+..+|..+..-++..+|..
T Consensus 127 p~lH~~la~~l~~e~~~~~a~~ 148 (312)
T KOG3024|consen 127 PELHALLADKLWTEDNVEEARR 148 (312)
T ss_pred HHHHHHHHHHHHhcccHHHHHh
Confidence 3346667777777777777666
No 477
>KOG4279|consensus
Probab=33.15 E-value=1.6e+02 Score=28.15 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=54.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHH---HHHHHHHHHHH---hhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK---HYGNIGRLYQS---MQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
-.|+...+|+.-++..+..-.+ ++.-.++. ..+..|..+.+ -|+-++|+...-.+++.. |+-.|
T Consensus 209 lSyRDvQdY~amirLVe~Lk~i------P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e----g~vap 278 (1226)
T KOG4279|consen 209 LSYRDVQDYDAMIRLVEDLKRI------PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE----GPVAP 278 (1226)
T ss_pred hhhccccchHHHHHHHHHHHhC------cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc----CCCCC
Confidence 5568888888877776554332 21111111 11122333333 467778877776665532 33333
Q ss_pred HHHHHHHHHHHHHH--------HhhcCHHHHHHHHHHHHHhhh
Q psy4339 172 EVGLSVGHLASLYN--------YHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 172 ~~~~~~~~la~~~~--------~~~g~~~~A~~~~~~al~~~~ 206 (303)
+ .++-.|++|. -..+..+.|+++|++|.+..|
T Consensus 279 D---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 279 D---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP 318 (1226)
T ss_pred c---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc
Confidence 3 3444555553 034667889999999999887
No 478
>KOG4151|consensus
Probab=32.72 E-value=2.3e+02 Score=27.11 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=77.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--hcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--QKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
+..+..+++..+..-|..++.+.+ .+++..+....+.+.|+..+ ++|.+++.-..-|+.. .|....
T Consensus 61 n~~~~K~d~~~~~~~~~~~~~llp----~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~--------~p~i~~ 128 (748)
T KOG4151|consen 61 NKLFQKRDYEGAMFRYDCAIKLLP----KDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALES--------QPRISK 128 (748)
T ss_pred hHHhhhhhhhccchhhhhhheecc----ccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc--------cchHHH
Confidence 445677888888888888887654 46788888899999998775 6777777766666543 377788
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGL 218 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 218 (303)
++...+..|. ..++++-|..-+.-...+.|.++..+...-.+
T Consensus 129 ~Ll~r~~~y~-al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 129 ALLKRARKYE-ALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred HHhhhhhHHH-HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 8888899997 88888888887665555666554444433333
No 479
>KOG1258|consensus
Probab=32.69 E-value=4.1e+02 Score=24.65 Aligned_cols=114 Identities=12% Similarity=-0.068 Sum_probs=74.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|+++...-.|++++--+.. ....+...+ .-....|+.+-|-..+..+.++.. +..
T Consensus 308 i~~g~~~~~~~l~ercli~cA~--------Y~efWiky~----------~~m~~~~~~~~~~~~~~~~~~i~~----k~~ 365 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCAL--------YDEFWIKYA----------RWMESSGDVSLANNVLARACKIHV----KKT 365 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhh--------hHHHHHHHH----------HHHHHcCchhHHHHHHHhhhhhcC----CCC
Confidence 5789999999888888765432 122222333 222445888888888888888753 223
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEK 196 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~ 196 (303)
| .+...-+.+....|++..|...+++...-. |....+-........ ..|+.+.+..
T Consensus 366 ~---~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~-r~~~~~~~~~ 421 (577)
T KOG1258|consen 366 P---IIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWER-RKGNLEDANY 421 (577)
T ss_pred c---HHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHH-HhcchhhhhH
Confidence 3 344455777788899999999999876532 444444444444443 6899888884
No 480
>KOG3024|consensus
Probab=32.57 E-value=2.9e+02 Score=22.98 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 153 RMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 153 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
.+.+.+++-..+ .|.........+..+|..++ ..+++.+|..+|-.
T Consensus 107 ~~v~raikWS~~-~~~~k~G~p~lH~~la~~l~-~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 107 TFVRRAIKWSKE-FGEGKYGHPELHALLADKLW-TEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHH-hcccHHHHHhHhhh
Confidence 344455554333 22222333456778888886 88888888887754
No 481
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.43 E-value=66 Score=15.45 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=13.3
Q ss_pred hcHHHHHHHHHHHHHHH
Q psy4339 146 QKFDEAERMQLKAIAIK 162 (303)
Q Consensus 146 ~~~~~A~~~~~~al~~~ 162 (303)
|+++.|...|++++...
T Consensus 1 ~~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 1 GDIERARKIYERALEKF 17 (33)
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 46788888999988754
No 482
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=32.02 E-value=3.4e+02 Score=23.52 Aligned_cols=43 Identities=14% Similarity=-0.171 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSL 121 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 121 (303)
+.+.+++|+|.++..++.... -........|..+|+.|--.++
T Consensus 112 Eka~vlfNigal~sq~a~~~~-r~~~~glK~A~~~fq~AAG~F~ 154 (361)
T cd09239 112 EEASVLYNIGALHSQLGASDK-RDSEEGMKVACTHFQCAAWAFA 154 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHHHH
Confidence 367788888877765553210 0122346677778887766554
No 483
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=31.55 E-value=2.3e+02 Score=21.45 Aligned_cols=101 Identities=11% Similarity=-0.115 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYS 216 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (303)
..-..-..-|.|.+|..++.+.++.. +..+...+|..++.+.. ...+-.--+.--.+..+...
T Consensus 98 eqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~-vidD~nl~i~dk~kL~kyL~---------- 160 (220)
T PF10858_consen 98 EQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCM-VIDDQNLNIQDKEKLIKYLN---------- 160 (220)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHh-eecccccChhhHHHHHHHHh----------
Confidence 33344566788899999998888763 33566777777777775 55432111111111111111
Q ss_pred hhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHHH
Q psy4339 217 GLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLS 263 (303)
Q Consensus 217 ~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 263 (303)
-...+..|-.+.+-..-|..-.+.|...+|+++++.+.
T Consensus 161 ---------yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~ 198 (220)
T PF10858_consen 161 ---------YFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLL 198 (220)
T ss_pred ---------hccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11233444444444445555567788889998877763
No 484
>KOG2063|consensus
Probab=30.56 E-value=5.4e+02 Score=25.45 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHhhhcHHHHHH-HHHHHH---HHHHHHhhhhc
Q psy4339 237 YDYRGLIHVYECLENFEKMTE-FTNKLS---EWKILRETNEL 274 (303)
Q Consensus 237 ~~~~~la~~~~~~g~~~~A~~-~~~~~~---~~~~~~~~~~~ 274 (303)
..+...+.++.+.|+.++|+. +...+. .....+...++
T Consensus 685 ~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~ 726 (877)
T KOG2063|consen 685 ELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYE 726 (877)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhcc
Confidence 346677888888999999998 655553 33455555555
No 485
>KOG0739|consensus
Probab=30.51 E-value=3.4e+02 Score=23.03 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=13.8
Q ss_pred hhcCHHHHHHHHHHHHHhhh
Q psy4339 187 HMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~ 206 (303)
..++|++|..+|+.+++.+.
T Consensus 22 ~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 22 NAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred chhchHHHHHHHHHHHHHHH
Confidence 45677777777777775444
No 486
>PRK14707 hypothetical protein; Provisional
Probab=30.06 E-value=8.1e+02 Score=27.32 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHH
Q psy4339 38 DELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNAL 117 (303)
Q Consensus 38 ~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 117 (303)
..+++++ ...++|.++-.+-.-+..+.... ..++.+...++-.+.. ++.-..+++.+.-.+-.-+.
T Consensus 919 Q~VAN~L----NALSKWPd~~~Cr~Aa~aLA~rL--a~d~~Lr~Aln~Q~ls--------NtLNALSKWPd~~~c~~AA~ 984 (2710)
T PRK14707 919 HRVATAL----NALSKWPDIPVCATAASALAERL--SDDPDLREALDASNLP--------QVLNALSKWPDVPAGGEVVD 984 (2710)
T ss_pred HHHHHHH----hhhccCCCchHHHHHHHHHHHHh--ccChhhhhhccHHHHH--------HHHhhhccCCCchHHHHHHH
Confidence 3455555 35566665544444444444443 1223322222221111 44456667766666666555
Q ss_pred HHHHHhhCCCcHHHHH--HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHHHHHhhcCHHH
Q psy4339 118 VLSLKHFGENNVQTAK--HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL--SVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 118 ~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~~g~~~~ 193 (303)
.+...+ .+.+.... .-..+++++..+.+|.++-.+-.-+..+..... ..|.... .-..++.++. .+.++.+
T Consensus 985 aLA~rL--~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LN-ALSKWPd 1059 (2710)
T PRK14707 985 ALAERL--VDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLN-ALCKWPE 1059 (2710)
T ss_pred HHHHHH--hccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHH-hhccCCC
Confidence 555443 12222222 234688888899999888777777777776652 2333322 2346778887 8888877
Q ss_pred HHHHHHHHHHhhh
Q psy4339 194 AEKLYFRSIEIND 206 (303)
Q Consensus 194 A~~~~~~al~~~~ 206 (303)
.-.+-.-+..+..
T Consensus 1060 e~~Cr~Aa~aLA~ 1072 (2710)
T PRK14707 1060 MPVCLAAASALAE 1072 (2710)
T ss_pred chhHHHHHHHHHH
Confidence 6666655555554
No 487
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.68 E-value=3.7e+02 Score=23.19 Aligned_cols=139 Identities=14% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-----------------------
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV----------------------- 165 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------------------- 165 (303)
+...|+++.+..++ .....-.-.+-|.++...++|.++...+..+-...+.-
T Consensus 40 ~~~~y~Q~~q~~kk-----~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi 114 (449)
T COG3014 40 PKKAYEQSKQFTKK-----KKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNV 114 (449)
T ss_pred chhHHHHHHHhhhh-----hhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccch
Q ss_pred --cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHH-----------------h
Q psy4339 166 --LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL-----------------K 226 (303)
Q Consensus 166 --~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~-----------------~ 226 (303)
+++..-+.......+|.-|+ ...+++.|.--++++....+ ..-+.+.+++ +
T Consensus 115 ~~Y~g~~YE~~~~n~YkaLNYm-~~nD~~~ArVEfnRan~rQ~---------~AKe~~~~ei~ka~~e~ds~k~~~N~~~ 184 (449)
T COG3014 115 RAYGGNIYEGVLINYYKALNYM-LLNDSAKARVEFNRANERQR---------RAKEFYYEEVQKAIKEIDSSKHNINMER 184 (449)
T ss_pred hhcCchhHHHHHHHHHHHhhHH-HhcchhhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhccCCCchhH
Q ss_pred hhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 227 LFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
...+........|.++...|...+++-.+-- |+..+
T Consensus 185 ~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~l 221 (449)
T COG3014 185 SRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGL 221 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
No 488
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.51 E-value=1.9e+02 Score=22.08 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
...+.+++.++...|+.++|.....++..++
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999988776
No 489
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.30 E-value=69 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 134 ~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
-+..|+.+|...|.+++|++.+.+-..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366899999999999999999987654
No 490
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=29.30 E-value=3.9e+02 Score=23.33 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchh-----h
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSEN----LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL-----L 78 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~ 78 (303)
++.+.....++..+ .+.+.. |..-...+.+++.++.+|...++++-+...++.. +. ...++.+ +
T Consensus 146 l~~~sr~l~R~Fn~---il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~-~~---vs~~Di~~~~~sq 218 (413)
T COG5600 146 LSKISRLLTRMFNS---ILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKAS-KE---VSMPDISEYQKSQ 218 (413)
T ss_pred HHHHHHHHHHHHHH---hcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc-cc---ccccccchhhhcc
Confidence 34444444444443 443333 3444555666666666668999998877666532 22 1223333 2
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLK 122 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 122 (303)
.....+.+| ..|.-..++-+|...+.+|...+..
T Consensus 219 ~v~f~YYLG----------~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 219 VVVFHYYLG----------IYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred eeehhhHHH----------HHHHHHHhHHHHHHHHHHHHHhChh
Confidence 455677888 6668888999999999998886554
No 491
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=29.25 E-value=2.5e+02 Score=21.15 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=15.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcH
Q psy4339 126 ENNVQTAKHYGNIGRLYQSMQKF 148 (303)
Q Consensus 126 ~~~~~~~~~~~~la~~~~~~~~~ 148 (303)
.++|...-+++.+-.+|.+.|.+
T Consensus 85 S~NpiY~LilNgfk~lY~rvg~~ 107 (164)
T PF07840_consen 85 SGNPIYGLILNGFKGLYSRVGRY 107 (164)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchhhHHcccHHHHHHHHHH
Confidence 35677777777777777777765
No 492
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=27.78 E-value=5.9e+02 Score=24.93 Aligned_cols=21 Identities=10% Similarity=-0.124 Sum_probs=15.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQV 24 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~ 24 (303)
..+..+.|..+|...+.+.-.
T Consensus 824 vn~~~~~aLsLyd~slallia 844 (1243)
T COG5290 824 VNFFNEFALSLYDKSLALLIA 844 (1243)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 456678888888887776543
No 493
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=27.75 E-value=2.3e+02 Score=24.20 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHHHhh-----cHHHHHHHHHHHHH
Q psy4339 128 NVQTAKHYGNIGRLYQSMQ-----KFDEAERMQLKAIA 160 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~ 160 (303)
.+....++..+|.+|..++ ++++|..+.++++.
T Consensus 172 r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 172 RAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 3455677888999999999 88999998888875
No 494
>KOG4521|consensus
Probab=27.50 E-value=6.9e+02 Score=25.69 Aligned_cols=22 Identities=18% Similarity=-0.126 Sum_probs=19.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVL 119 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~ 119 (303)
.+|...|+.-+|+.+|.+|..-
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhc
Confidence 6678899999999999998864
No 495
>KOG2422|consensus
Probab=26.99 E-value=5.2e+02 Score=24.08 Aligned_cols=109 Identities=7% Similarity=-0.006 Sum_probs=75.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-------
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKH----FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD------- 169 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------- 169 (303)
.-...|++|...|.-|.....-. .-..+|-....+..+|.++..+|+.+-|-.+.++++=..+....+.
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 34456788888888888765321 1124577788899999999999999999999999988777653221
Q ss_pred ------chHHHH---HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh-hhh
Q psy4339 170 ------DYEVGL---SVGHLASLYNYHMLEYHKAEKLYFRSIEINDN-LKL 210 (303)
Q Consensus 170 ------~~~~~~---~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~-~~~ 210 (303)
+|..-. +++.--..+. +.|=+..|.++++-.+++.+. +|.
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~-~RGC~rTA~E~cKlllsLdp~eDPl 378 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLA-QRGCWRTALEWCKLLLSLDPSEDPL 378 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCcCCch
Confidence 122111 1222222333 578899999999999998885 564
No 496
>KOG0546|consensus
Probab=26.49 E-value=91 Score=26.65 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh------------hHHHHHHHHHHHHHHhhhhHHHHh
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL------------LTSAHRVKALILEEIALDSNELIS 102 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~~~~~ 102 (303)
....+.|+-. +..++|+.|..-|.+++...... ..+.+. ......+++ .+-..
T Consensus 223 ~~~k~~~~~~----~kk~~~~~a~~k~~k~~r~~~~~-s~~~~~e~~~~~~~~~~~r~~~~~n~~----------~~~lk 287 (372)
T KOG0546|consen 223 EKKKNIGNKE----FKKQRYREALAKYRKALRYLSEQ-SRDREKEQENRIPPLRELRFSIRRNLA----------AVGLK 287 (372)
T ss_pred hhhhccchhh----hhhccHhHHHHHHHHHhhhhccc-ccccccccccccccccccccccccchH----------Hhccc
Confidence 3444456555 58999999999999998876531 111111 122333333 33356
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
.+.+..|...-..++. ..+....++...+..+....++++|++.++.+...
T Consensus 288 ~~~~~~a~~~~~~~~~--------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 288 VKGRGGARFRTNEALR--------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred ccCCCcceeccccccc--------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 6666666665555444 24455667889999999999999999999988654
No 497
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=26.20 E-value=4.3e+02 Score=22.82 Aligned_cols=127 Identities=17% Similarity=-0.050 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh---C-C----CcHHHHHHHHHHHHHHHHhh---
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF---G-E----NNVQTAKHYGNIGRLYQSMQ--- 146 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~-~----~~~~~~~~~~~la~~~~~~~--- 146 (303)
+.+.+++|+|.++..++..... ........|..+|++|-.++.-+. . . -++....++.++.....+.-
T Consensus 105 E~a~vL~N~aa~~s~~a~~~~~-~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ 183 (377)
T PF03097_consen 105 EKACVLFNIAALYSQLAASQNR-STDEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQECFYE 183 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-T-TSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-ccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888777666532211 144567888888888877764331 1 1 12333444443322222111
Q ss_pred --------------cHHHHHHHHHHHHHHHHHhcC-----CCc---------hHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 147 --------------KFDEAERMQLKAIAIKEKVLG-----KDD---------YEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 147 --------------~~~~A~~~~~~al~~~~~~~~-----~~~---------~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
--.++..+|+.|......... ... -..+.+++..|.... ..+++.+|+.++
T Consensus 184 ka~~~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~-~~~~~G~aia~L 262 (377)
T PF03097_consen 184 KAIADKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAE-EAKKYGEAIARL 262 (377)
T ss_dssp HHHHTTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccHHHHHH
Confidence 122344555555544422100 000 012345566667775 778888999888
Q ss_pred HHHHHhhh
Q psy4339 199 FRSIEIND 206 (303)
Q Consensus 199 ~~al~~~~ 206 (303)
+.|.....
T Consensus 263 ~~A~~~l~ 270 (377)
T PF03097_consen 263 RRAEEALK 270 (377)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887766
No 498
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=26.12 E-value=1.6e+02 Score=24.28 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=47.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
...-....|.+.+.+|+-..+.. .+....+.+....+..|+...+|+-|-.||..|..++..
T Consensus 50 ~s~~~~~n~~e~~d~ALm~Ae~r--~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 50 HSDATMENAKELLDKALMTAEGR--GDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred hcccChhhHHHHHHHHHHhhhcc--CCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 34456778899999999887653 333444555667788889999999999999999988643
No 499
>KOG4056|consensus
Probab=26.04 E-value=1.8e+02 Score=21.15 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..+|.-+..+|+++++..++-.|+.++
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vc 111 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVC 111 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhc
Confidence 468999999999999999999998775
No 500
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=25.88 E-value=1.2e+02 Score=24.82 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=43.0
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 146 QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 146 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
-....|.+++.+|+-..+.. .+...++.+-...+..| |...+|+-|..||.+|.....
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r--~D~~~IG~~~~~~~v~~-~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 53 ATMENAKELLDKALMTAEGR--GDRSKIGLVNFRYFVHF-FNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred cChhhHHHHHHHHHHhhhcc--CCcceeeeehhhhHHHh-hhHHHHHHHHHHHHHHHHHhh
Confidence 34577888999998877664 33344444555666777 489999999999999998765
Done!