Query psy4339
Match_columns 303
No_of_seqs 373 out of 1211
Neff 10.9
Searched_HMMs 29240
Date Fri Aug 16 23:03:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3edt_B KLC 2, kinesin light ch 100.0 1.1E-25 3.7E-30 183.8 29.7 242 6-262 15-278 (283)
2 3nf1_A KLC 1, kinesin light ch 99.9 2.3E-23 7.8E-28 172.5 29.9 244 4-262 39-304 (311)
3 3ulq_A Response regulator aspa 99.9 1.4E-22 4.7E-27 173.6 29.0 245 5-274 116-374 (383)
4 3nf1_A KLC 1, kinesin light ch 99.9 4.4E-22 1.5E-26 164.7 27.2 205 26-264 19-224 (311)
5 3q15_A PSP28, response regulat 99.9 5.8E-22 2E-26 169.4 27.2 242 5-269 114-370 (378)
6 3edt_B KLC 2, kinesin light ch 99.9 2.2E-21 7.5E-26 158.1 23.4 185 49-263 12-197 (283)
7 4a1s_A PINS, partner of inscut 99.9 5.3E-20 1.8E-24 158.6 30.5 243 4-269 98-377 (411)
8 2pl2_A Hypothetical conserved 99.9 2.5E-21 8.4E-26 152.7 18.4 182 6-262 19-211 (217)
9 3sf4_A G-protein-signaling mod 99.9 1E-19 3.6E-24 156.0 30.2 241 5-268 60-340 (406)
10 3ro2_A PINS homolog, G-protein 99.9 2.1E-19 7.2E-24 149.7 30.3 235 5-262 56-330 (338)
11 4gyw_A UDP-N-acetylglucosamine 99.9 3.1E-21 1.1E-25 176.4 20.4 172 29-266 4-176 (723)
12 3sf4_A G-protein-signaling mod 99.9 9.2E-20 3.1E-24 156.4 28.5 235 5-262 100-374 (406)
13 3n71_A Histone lysine methyltr 99.9 8.1E-21 2.8E-25 166.0 21.4 146 49-205 320-465 (490)
14 3ro2_A PINS homolog, G-protein 99.9 1.1E-19 3.9E-24 151.4 27.6 180 5-207 96-295 (338)
15 4a1s_A PINS, partner of inscut 99.9 2.1E-19 7.3E-24 154.7 29.1 238 5-268 61-336 (411)
16 2ifu_A Gamma-SNAP; membrane fu 99.9 7.1E-20 2.4E-24 152.0 24.7 215 5-262 4-221 (307)
17 3ulq_A Response regulator aspa 99.9 5.5E-20 1.9E-24 157.3 24.6 189 36-266 105-295 (383)
18 1qqe_A Vesicular transport pro 99.9 9.5E-20 3.2E-24 150.2 24.6 211 10-261 3-224 (292)
19 3n71_A Histone lysine methyltr 99.9 2.8E-20 9.5E-25 162.6 21.2 145 98-262 317-461 (490)
20 3q15_A PSP28, response regulat 99.9 9.8E-20 3.3E-24 155.6 23.9 187 34-262 101-287 (378)
21 3vtx_A MAMA; tetratricopeptide 99.9 3.5E-20 1.2E-24 142.0 18.8 165 32-262 3-168 (184)
22 4eqf_A PEX5-related protein; a 99.8 2.8E-19 9.6E-24 151.7 22.3 221 5-262 78-307 (365)
23 1qqe_A Vesicular transport pro 99.8 7.5E-19 2.6E-23 144.8 24.2 211 5-259 50-263 (292)
24 1w3b_A UDP-N-acetylglucosamine 99.8 3.2E-19 1.1E-23 152.7 20.9 191 33-262 168-365 (388)
25 2pl2_A Hypothetical conserved 99.8 2.9E-19 9.8E-24 140.8 17.7 165 31-262 2-177 (217)
26 1w3b_A UDP-N-acetylglucosamine 99.8 4.3E-19 1.5E-23 151.9 20.1 92 98-206 143-234 (388)
27 2ifu_A Gamma-SNAP; membrane fu 99.8 4.7E-18 1.6E-22 141.0 25.5 176 6-206 50-225 (307)
28 3uq3_A Heat shock protein STI1 99.8 3.7E-18 1.3E-22 137.2 23.7 198 5-263 18-235 (258)
29 2h6f_A Protein farnesyltransfe 99.8 6.8E-19 2.3E-23 149.9 17.7 208 7-262 112-344 (382)
30 3vtx_A MAMA; tetratricopeptide 99.8 2.5E-18 8.6E-23 131.5 18.3 159 3-208 16-174 (184)
31 2qfc_A PLCR protein; TPR, HTH, 99.8 3.3E-18 1.1E-22 141.0 20.2 194 31-266 72-268 (293)
32 4g1t_A Interferon-induced prot 99.8 3.1E-18 1E-22 150.2 20.4 211 28-261 45-272 (472)
33 3u3w_A Transcriptional activat 99.8 6.9E-18 2.4E-22 139.0 21.2 196 31-270 72-272 (293)
34 3qky_A Outer membrane assembly 99.8 6.2E-18 2.1E-22 136.9 20.5 192 7-257 30-253 (261)
35 1fch_A Peroxisomal targeting s 99.8 4.1E-18 1.4E-22 144.4 20.3 214 6-262 78-311 (368)
36 3gw4_A Uncharacterized protein 99.8 2.4E-17 8.3E-22 127.8 22.9 158 29-206 21-178 (203)
37 3qky_A Outer membrane assembly 99.8 5.8E-18 2E-22 137.0 19.6 179 30-262 11-221 (261)
38 4abn_A Tetratricopeptide repea 99.8 2.9E-18 9.8E-23 150.8 18.2 179 9-259 120-315 (474)
39 3qww_A SET and MYND domain-con 99.8 2.2E-18 7.6E-23 148.3 16.6 123 49-181 309-431 (433)
40 2h6f_A Protein farnesyltransfe 99.8 2.5E-18 8.7E-23 146.4 16.3 194 29-261 92-301 (382)
41 3qww_A SET and MYND domain-con 99.8 2.4E-18 8.1E-23 148.1 16.0 123 101-243 309-431 (433)
42 3hym_B Cell division cycle pro 99.8 3.4E-18 1.2E-22 142.4 16.6 172 33-262 124-296 (330)
43 4abn_A Tetratricopeptide repea 99.8 7.3E-18 2.5E-22 148.2 19.4 187 10-261 79-283 (474)
44 4i17_A Hypothetical protein; T 99.8 1.1E-17 3.8E-22 132.5 18.7 137 35-206 8-148 (228)
45 4g1t_A Interferon-induced prot 99.8 6.8E-18 2.3E-22 148.0 19.2 235 3-261 62-359 (472)
46 3ro3_A PINS homolog, G-protein 99.8 6.6E-17 2.3E-21 120.2 21.9 157 29-206 4-160 (164)
47 2ho1_A Type 4 fimbrial biogene 99.8 1.6E-17 5.6E-22 133.3 19.5 196 30-262 32-235 (252)
48 3u4t_A TPR repeat-containing p 99.8 5.4E-18 1.8E-22 137.6 16.4 211 6-262 17-247 (272)
49 2q7f_A YRRB protein; TPR, prot 99.8 4.9E-18 1.7E-22 135.4 15.9 166 31-262 54-219 (243)
50 4gyw_A UDP-N-acetylglucosamine 99.8 2.4E-18 8.3E-23 157.4 15.8 158 3-207 20-177 (723)
51 3qwp_A SET and MYND domain-con 99.8 9.5E-18 3.2E-22 144.6 17.5 130 49-189 298-427 (429)
52 4eqf_A PEX5-related protein; a 99.8 1.9E-17 6.5E-22 140.4 19.1 218 5-259 112-350 (365)
53 3uq3_A Heat shock protein STI1 99.8 1.5E-16 5E-21 127.8 23.4 179 31-262 2-199 (258)
54 1fch_A Peroxisomal targeting s 99.8 2.2E-17 7.5E-22 139.9 19.3 215 5-262 111-357 (368)
55 2vq2_A PILW, putative fimbrial 99.8 6.7E-17 2.3E-21 127.0 20.8 197 29-262 3-208 (225)
56 3qwp_A SET and MYND domain-con 99.8 6E-18 2E-22 145.9 15.0 133 98-250 295-427 (429)
57 1xnf_A Lipoprotein NLPI; TPR, 99.8 1E-16 3.5E-21 130.1 21.4 213 6-262 19-241 (275)
58 3hym_B Cell division cycle pro 99.8 2.5E-17 8.6E-22 137.1 18.1 211 5-262 35-262 (330)
59 3gw4_A Uncharacterized protein 99.8 1.8E-16 6.1E-21 122.9 21.7 177 49-268 3-180 (203)
60 3fp2_A TPR repeat-containing p 99.8 5.4E-17 1.8E-21 144.4 20.8 207 8-262 259-488 (537)
61 3u3w_A Transcriptional activat 99.8 6.1E-17 2.1E-21 133.4 19.5 171 16-206 92-268 (293)
62 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.5E-16 5.3E-21 125.8 20.7 175 34-262 4-210 (225)
63 2vq2_A PILW, putative fimbrial 99.8 2.3E-16 7.8E-21 124.0 21.4 161 5-210 21-183 (225)
64 4ga2_A E3 SUMO-protein ligase 99.8 2.8E-18 9.6E-23 127.0 9.7 129 39-206 2-131 (150)
65 3ieg_A DNAJ homolog subfamily 99.8 2.7E-16 9.2E-21 132.3 22.8 186 41-262 127-332 (359)
66 3cv0_A Peroxisome targeting si 99.8 4.2E-17 1.4E-21 135.6 17.4 213 6-262 35-266 (327)
67 3ieg_A DNAJ homolog subfamily 99.8 1.2E-16 4.1E-21 134.4 20.1 187 5-262 16-214 (359)
68 2ho1_A Type 4 fimbrial biogene 99.7 2.1E-16 7.1E-21 126.8 20.3 157 79-262 36-201 (252)
69 2xpi_A Anaphase-promoting comp 99.7 1.3E-16 4.6E-21 143.8 21.3 189 7-262 388-576 (597)
70 2y4t_A DNAJ homolog subfamily 99.7 2.4E-16 8.2E-21 137.2 22.0 109 33-161 93-206 (450)
71 3mkr_A Coatomer subunit epsilo 99.7 3.9E-17 1.3E-21 134.3 15.5 81 146-262 180-261 (291)
72 3as5_A MAMA; tetratricopeptide 99.7 8.4E-17 2.9E-21 122.4 16.3 167 30-262 4-170 (186)
73 3ro3_A PINS homolog, G-protein 99.7 4.1E-16 1.4E-20 115.9 19.6 152 75-262 4-156 (164)
74 1hz4_A MALT regulatory protein 99.7 1.6E-15 5.3E-20 129.0 25.4 233 6-262 28-279 (373)
75 2qfc_A PLCR protein; TPR, HTH, 99.7 8.8E-17 3E-21 132.4 17.1 154 32-206 113-268 (293)
76 3cv0_A Peroxisome targeting si 99.7 7.1E-17 2.4E-21 134.2 16.7 213 6-262 69-313 (327)
77 4i17_A Hypothetical protein; T 99.7 1.2E-16 4.1E-21 126.5 16.5 159 5-206 20-211 (228)
78 2y4t_A DNAJ homolog subfamily 99.7 5.5E-16 1.9E-20 134.9 21.9 188 7-262 158-355 (450)
79 1hz4_A MALT regulatory protein 99.7 3.5E-15 1.2E-19 126.8 24.8 188 33-262 13-200 (373)
80 4b4t_Q 26S proteasome regulato 99.7 2.3E-15 7.9E-20 130.5 23.6 193 32-265 53-246 (434)
81 2gw1_A Mitochondrial precursor 99.7 1.1E-15 3.7E-20 135.1 21.8 228 5-262 202-475 (514)
82 2xpi_A Anaphase-promoting comp 99.7 1.2E-15 4.1E-20 137.6 21.6 212 4-262 317-542 (597)
83 3urz_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 119.2 18.3 162 34-262 4-183 (208)
84 3fp2_A TPR repeat-containing p 99.7 1.6E-15 5.5E-20 134.9 21.4 188 8-262 211-404 (537)
85 2pzi_A Probable serine/threoni 99.7 6.7E-17 2.3E-21 148.1 11.3 177 8-251 407-583 (681)
86 4gco_A Protein STI-1; structur 99.7 5.9E-16 2E-20 110.9 13.8 117 30-184 9-125 (126)
87 4gco_A Protein STI-1; structur 99.7 4.7E-16 1.6E-20 111.4 13.1 105 75-206 8-112 (126)
88 2q7f_A YRRB protein; TPR, prot 99.7 3.3E-16 1.1E-20 124.7 13.6 165 32-262 21-185 (243)
89 3urz_A Uncharacterized protein 99.7 3.2E-15 1.1E-19 116.8 18.4 154 5-206 17-188 (208)
90 1ouv_A Conserved hypothetical 99.7 6.8E-15 2.3E-19 119.6 20.3 201 7-262 21-248 (273)
91 2gw1_A Mitochondrial precursor 99.7 1.1E-14 3.6E-19 128.7 23.2 224 5-261 19-329 (514)
92 4ga2_A E3 SUMO-protein ligase 99.7 5.5E-16 1.9E-20 114.6 11.7 136 15-190 13-149 (150)
93 3u4t_A TPR repeat-containing p 99.7 7.1E-16 2.4E-20 125.0 13.4 191 35-262 4-205 (272)
94 4gcn_A Protein STI-1; structur 99.7 1.1E-14 3.9E-19 104.3 17.2 109 30-161 4-112 (127)
95 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.2E-14 7.5E-19 113.4 20.0 176 6-206 18-215 (225)
96 4gcn_A Protein STI-1; structur 99.7 8.7E-15 3E-19 104.9 16.0 111 76-206 4-114 (127)
97 1ouv_A Conserved hypothetical 99.6 2.2E-14 7.7E-19 116.5 19.0 187 31-262 3-212 (273)
98 3as5_A MAMA; tetratricopeptide 99.6 6.3E-15 2.1E-19 111.9 14.6 152 15-206 24-175 (186)
99 2r5s_A Uncharacterized protein 99.6 2.6E-15 8.9E-20 114.0 11.0 167 31-262 3-171 (176)
100 3mkr_A Coatomer subunit epsilo 99.6 5.8E-14 2E-18 115.4 19.8 202 15-262 15-227 (291)
101 1p5q_A FKBP52, FK506-binding p 99.6 3.7E-15 1.3E-19 125.1 12.4 159 50-262 125-292 (336)
102 2ond_A Cleavage stimulation fa 99.6 2E-14 6.9E-19 119.1 15.8 214 9-262 33-267 (308)
103 3qou_A Protein YBBN; thioredox 99.6 1.6E-14 5.4E-19 118.6 14.7 168 31-262 114-282 (287)
104 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.6E-14 2.6E-18 113.0 18.7 184 5-258 56-268 (275)
105 3rjv_A Putative SEL1 repeat pr 99.6 4.1E-14 1.4E-18 110.8 15.6 159 34-262 18-194 (212)
106 2vsy_A XCC0866; transferase, g 99.6 1.6E-14 5.6E-19 129.7 15.0 149 51-261 2-153 (568)
107 2pzi_A Probable serine/threoni 99.6 2.9E-15 1E-19 137.2 10.3 157 50-261 403-559 (681)
108 3gyz_A Chaperone protein IPGC; 99.6 3.4E-14 1.2E-18 104.7 14.0 104 76-206 32-135 (151)
109 2ond_A Cleavage stimulation fa 99.6 7.8E-14 2.7E-18 115.6 17.8 151 9-204 81-232 (308)
110 2vsy_A XCC0866; transferase, g 99.6 1.6E-14 5.6E-19 129.7 14.1 154 7-207 4-160 (568)
111 3gyz_A Chaperone protein IPGC; 99.6 6.7E-14 2.3E-18 103.1 14.4 105 28-162 30-134 (151)
112 1p5q_A FKBP52, FK506-binding p 99.6 1.3E-14 4.3E-19 121.8 11.7 146 30-206 143-296 (336)
113 2vgx_A Chaperone SYCD; alterna 99.6 1.4E-14 4.8E-19 106.7 10.5 107 76-209 17-123 (148)
114 2fo7_A Synthetic consensus TPR 99.6 1.7E-13 5.8E-18 98.2 15.2 133 35-206 2-134 (136)
115 2vgx_A Chaperone SYCD; alterna 99.5 1.3E-13 4.4E-18 101.5 13.0 103 30-162 17-119 (148)
116 1a17_A Serine/threonine protei 99.5 6E-13 2E-17 99.3 16.7 139 31-206 10-148 (166)
117 2hr2_A Hypothetical protein; a 99.5 4E-13 1.4E-17 98.3 15.1 116 79-206 10-133 (159)
118 3upv_A Heat shock protein STI1 99.5 4E-13 1.4E-17 95.8 14.6 101 79-206 3-103 (126)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.5E-13 5.3E-18 107.2 13.5 141 32-206 4-152 (213)
120 4b4t_Q 26S proteasome regulato 99.5 3.6E-12 1.2E-16 110.3 23.5 181 4-206 67-247 (434)
121 3upv_A Heat shock protein STI1 99.5 7.1E-13 2.4E-17 94.5 15.7 123 31-185 1-123 (126)
122 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.7E-14 5.8E-19 126.1 8.5 154 50-257 246-406 (457)
123 2fbn_A 70 kDa peptidylprolyl i 99.5 4E-14 1.4E-18 109.5 9.4 153 49-257 15-177 (198)
124 1a17_A Serine/threonine protei 99.5 1.8E-12 6.2E-17 96.6 17.1 133 78-262 11-143 (166)
125 2fo7_A Synthetic consensus TPR 99.5 1.2E-12 4E-17 93.7 15.3 121 98-262 9-129 (136)
126 3rkv_A Putative peptidylprolyl 99.5 9.7E-13 3.3E-17 98.2 15.2 110 78-206 9-128 (162)
127 2xcb_A PCRH, regulatory protei 99.5 1.1E-12 3.8E-17 95.7 13.9 104 76-206 14-117 (142)
128 2xcb_A PCRH, regulatory protei 99.5 5.2E-13 1.8E-17 97.5 11.9 104 29-162 13-116 (142)
129 2e2e_A Formate-dependent nitri 99.5 2.5E-13 8.5E-18 102.9 10.4 123 49-206 21-146 (177)
130 2vyi_A SGTA protein; chaperone 99.5 1.6E-12 5.4E-17 92.6 14.0 124 75-252 7-130 (131)
131 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1E-12 3.5E-17 102.4 14.0 142 80-262 6-147 (213)
132 3sz7_A HSC70 cochaperone (SGT) 99.5 2E-12 7E-17 96.6 14.8 105 75-206 6-110 (164)
133 2lni_A Stress-induced-phosphop 99.5 7.6E-13 2.6E-17 94.8 11.7 124 74-251 10-133 (133)
134 2hr2_A Hypothetical protein; a 99.5 2.8E-12 9.5E-17 93.8 14.6 118 32-164 9-134 (159)
135 2r5s_A Uncharacterized protein 99.5 3.4E-13 1.1E-17 102.2 9.7 154 6-204 20-173 (176)
136 3qou_A Protein YBBN; thioredox 99.4 6.9E-13 2.4E-17 108.7 12.1 155 5-204 130-284 (287)
137 2lni_A Stress-induced-phosphop 99.4 1.6E-12 5.6E-17 93.0 12.4 124 28-190 10-133 (133)
138 2vyi_A SGTA protein; chaperone 99.4 3.1E-12 1.1E-16 91.1 13.6 125 28-191 6-130 (131)
139 3rkv_A Putative peptidylprolyl 99.4 3.4E-12 1.1E-16 95.2 14.0 129 31-190 8-147 (162)
140 3sz7_A HSC70 cochaperone (SGT) 99.4 3.1E-12 1.1E-16 95.6 13.5 104 29-162 6-109 (164)
141 1wao_1 Serine/threonine protei 99.4 5.1E-14 1.7E-18 123.6 3.9 131 30-199 2-134 (477)
142 3q49_B STIP1 homology and U bo 99.4 4.7E-12 1.6E-16 91.4 13.6 103 77-206 6-108 (137)
143 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 5.5E-13 1.9E-17 116.5 10.2 142 30-202 264-413 (457)
144 2c2l_A CHIP, carboxy terminus 99.4 1.7E-12 6E-17 106.0 11.4 102 33-164 3-104 (281)
145 2fbn_A 70 kDa peptidylprolyl i 99.4 5.3E-12 1.8E-16 97.5 13.2 142 30-202 34-184 (198)
146 1ihg_A Cyclophilin 40; ppiase 99.4 4.7E-12 1.6E-16 107.4 14.0 133 79-257 222-362 (370)
147 2xm6_A Protein corresponding t 99.4 6E-11 2.1E-15 104.6 21.6 126 34-204 75-216 (490)
148 2xev_A YBGF; tetratricopeptide 99.4 9.5E-12 3.2E-16 88.7 13.4 98 98-206 10-107 (129)
149 1na0_A Designed protein CTPR3; 99.4 1.3E-11 4.3E-16 87.1 13.8 100 80-206 9-108 (125)
150 3dra_A Protein farnesyltransfe 99.4 5.6E-11 1.9E-15 97.6 19.4 211 9-262 50-284 (306)
151 2ooe_A Cleavage stimulation fa 99.4 2E-11 6.9E-16 108.7 18.2 206 11-262 257-489 (530)
152 1elr_A TPR2A-domain of HOP; HO 99.4 4.4E-11 1.5E-15 85.0 16.3 108 79-206 3-110 (131)
153 2xm6_A Protein corresponding t 99.4 1.4E-10 4.9E-15 102.2 22.7 205 7-262 202-429 (490)
154 3q49_B STIP1 homology and U bo 99.4 1.3E-11 4.5E-16 89.0 13.0 104 31-164 6-109 (137)
155 4f3v_A ESX-1 secretion system 99.4 3.4E-12 1.2E-16 102.6 10.7 193 6-262 20-234 (282)
156 1hxi_A PEX5, peroxisome target 99.4 5.7E-12 2E-16 89.2 10.3 92 98-206 25-116 (121)
157 1na0_A Designed protein CTPR3; 99.3 2.9E-11 9.8E-16 85.2 13.6 118 33-189 8-125 (125)
158 1wao_1 Serine/threonine protei 99.3 6.2E-13 2.1E-17 116.7 5.4 119 98-260 14-134 (477)
159 2e2e_A Formate-dependent nitri 99.3 4E-12 1.4E-16 96.2 9.2 119 100-262 20-141 (177)
160 1elr_A TPR2A-domain of HOP; HO 99.3 4.5E-11 1.6E-15 85.0 14.3 122 32-185 2-123 (131)
161 1ihg_A Cyclophilin 40; ppiase 99.3 2.8E-11 9.5E-16 102.7 15.1 135 32-197 221-363 (370)
162 3rjv_A Putative SEL1 repeat pr 99.3 1.8E-11 6.2E-16 95.6 12.4 141 55-262 3-155 (212)
163 2xev_A YBGF; tetratricopeptide 99.3 8E-11 2.7E-15 83.8 14.7 118 35-181 3-120 (129)
164 1elw_A TPR1-domain of HOP; HOP 99.3 5E-11 1.7E-15 83.1 13.2 100 80-206 4-103 (118)
165 2if4_A ATFKBP42; FKBP-like, al 99.3 5.7E-12 1.9E-16 105.7 9.7 141 31-206 176-330 (338)
166 3k9i_A BH0479 protein; putativ 99.3 7.6E-12 2.6E-16 88.0 8.6 93 102-208 2-94 (117)
167 2c2l_A CHIP, carboxy terminus 99.3 2.6E-11 9E-16 99.0 12.9 103 80-209 4-106 (281)
168 2ooe_A Cleavage stimulation fa 99.3 2.7E-10 9.2E-15 101.4 20.3 155 17-209 304-459 (530)
169 2dba_A Smooth muscle cell asso 99.3 4.4E-11 1.5E-15 87.2 12.5 107 76-206 24-130 (148)
170 1zu2_A Mitochondrial import re 99.3 5.3E-11 1.8E-15 86.8 12.1 89 101-206 13-122 (158)
171 1hxi_A PEX5, peroxisome target 99.3 6.3E-11 2.2E-15 83.8 11.8 98 35-162 18-115 (121)
172 1elw_A TPR1-domain of HOP; HOP 99.3 1.5E-10 5.2E-15 80.5 13.3 114 33-184 3-116 (118)
173 3e4b_A ALGK; tetratricopeptide 99.2 4.3E-10 1.5E-14 98.1 17.3 180 36-262 178-384 (452)
174 2dba_A Smooth muscle cell asso 99.2 9E-11 3.1E-15 85.5 11.0 106 30-162 24-129 (148)
175 3k9i_A BH0479 protein; putativ 99.2 9.7E-11 3.3E-15 82.2 10.5 90 50-162 2-91 (117)
176 2if4_A ATFKBP42; FKBP-like, al 99.2 3E-11 1E-15 101.3 8.3 137 77-259 176-322 (338)
177 2kck_A TPR repeat; tetratricop 99.2 2.1E-11 7.3E-16 84.2 5.5 102 80-206 6-108 (112)
178 4f3v_A ESX-1 secretion system 99.2 2.2E-10 7.6E-15 92.1 11.0 144 36-217 104-249 (282)
179 3mv2_B Coatomer subunit epsilo 99.2 1.9E-09 6.6E-14 87.8 16.6 186 18-262 85-279 (310)
180 1xi4_A Clathrin heavy chain; a 99.2 3.1E-09 1E-13 101.1 19.8 183 33-262 1104-1306(1630)
181 3e4b_A ALGK; tetratricopeptide 99.1 1.6E-09 5.6E-14 94.4 16.6 148 15-204 195-351 (452)
182 2kck_A TPR repeat; tetratricop 99.1 5.9E-11 2E-15 81.9 5.9 97 132-262 6-103 (112)
183 1dce_A Protein (RAB geranylger 99.1 3.8E-10 1.3E-14 100.9 12.2 171 17-254 47-244 (567)
184 1zu2_A Mitochondrial import re 99.1 5.3E-10 1.8E-14 81.6 10.3 87 50-162 14-121 (158)
185 3q7a_A Farnesyltransferase alp 99.1 7.1E-09 2.4E-13 86.1 17.2 206 10-262 72-328 (349)
186 1na3_A Designed protein CTPR2; 99.1 1.2E-09 4.3E-14 72.4 9.8 87 128-250 5-91 (91)
187 1b89_A Protein (clathrin heavy 99.1 3.9E-10 1.3E-14 96.0 8.2 193 15-262 19-233 (449)
188 2l6j_A TPR repeat-containing p 99.0 5.8E-10 2E-14 77.0 7.7 96 132-257 4-99 (111)
189 1xi4_A Clathrin heavy chain; a 99.0 1.1E-08 3.9E-13 97.4 17.6 191 34-257 1134-1376(1630)
190 2kat_A Uncharacterized protein 99.0 3E-09 1E-13 74.1 10.2 82 108-206 3-84 (115)
191 3dss_A Geranylgeranyl transfer 99.0 3.5E-08 1.2E-12 81.5 17.5 151 16-206 47-224 (331)
192 3dss_A Geranylgeranyl transfer 99.0 1E-07 3.5E-12 78.7 20.2 153 14-206 89-269 (331)
193 3ma5_A Tetratricopeptide repea 99.0 3.7E-09 1.3E-13 71.8 8.9 70 128-206 3-72 (100)
194 2kat_A Uncharacterized protein 98.9 7E-09 2.4E-13 72.2 10.1 83 56-164 3-85 (115)
195 2l6j_A TPR repeat-containing p 98.9 3.1E-10 1.1E-14 78.4 2.8 99 80-199 4-102 (111)
196 1na3_A Designed protein CTPR2; 98.9 1.5E-08 5.2E-13 66.9 10.8 88 29-146 4-91 (91)
197 1klx_A Cysteine rich protein B 98.9 1.7E-08 5.9E-13 72.9 11.3 113 51-206 8-128 (138)
198 3mv2_B Coatomer subunit epsilo 98.9 1.4E-07 4.8E-12 76.9 16.5 170 13-214 114-292 (310)
199 1dce_A Protein (RAB geranylger 98.9 2E-07 6.8E-12 83.3 19.0 151 50-262 40-219 (567)
200 3dra_A Protein farnesyltransfe 98.9 2.5E-07 8.7E-12 75.8 17.9 178 50-262 44-247 (306)
201 3ma5_A Tetratricopeptide repea 98.8 2.8E-08 9.5E-13 67.4 9.6 71 76-164 3-73 (100)
202 1klx_A Cysteine rich protein B 98.8 7.2E-08 2.5E-12 69.6 12.3 109 102-262 7-123 (138)
203 1b89_A Protein (clathrin heavy 98.7 1.4E-07 4.7E-12 80.4 12.2 134 98-257 156-303 (449)
204 3q7a_A Farnesyltransferase alp 98.7 5.2E-07 1.8E-11 74.9 14.6 163 31-259 51-231 (349)
205 2kc7_A BFR218_protein; tetratr 98.5 2.1E-07 7.3E-12 62.5 6.8 84 98-206 8-92 (99)
206 3ly7_A Transcriptional activat 98.5 1.2E-05 4E-10 66.9 17.1 129 51-206 212-341 (372)
207 4e6h_A MRNA 3'-END-processing 98.5 2.2E-05 7.5E-10 71.4 19.8 213 12-262 329-567 (679)
208 2kc7_A BFR218_protein; tetratr 98.5 1.1E-06 3.8E-11 58.9 8.7 62 136-206 4-66 (99)
209 2v5f_A Prolyl 4-hydroxylase su 98.4 3.7E-06 1.3E-10 57.2 11.0 72 133-206 6-77 (104)
210 3ly7_A Transcriptional activat 98.4 1.4E-05 4.7E-10 66.5 16.3 129 5-162 212-340 (372)
211 3u64_A Protein TP_0956; tetrat 98.4 2.4E-05 8.2E-10 62.5 15.6 116 76-206 148-271 (301)
212 2v5f_A Prolyl 4-hydroxylase su 98.4 1.1E-05 3.9E-10 54.7 12.0 75 98-181 13-87 (104)
213 4e6h_A MRNA 3'-END-processing 98.3 8.4E-05 2.9E-09 67.6 19.1 160 9-206 360-535 (679)
214 1pc2_A Mitochondria fission pr 98.2 1.3E-05 4.5E-10 57.8 10.5 91 103-209 11-105 (152)
215 4g26_A Pentatricopeptide repea 98.2 0.00017 5.7E-09 63.5 19.2 165 49-262 37-201 (501)
216 3txn_A 26S proteasome regulato 98.1 0.00088 3E-08 56.5 20.3 185 35-263 20-209 (394)
217 3bee_A Putative YFRE protein; 98.1 2.3E-05 7.7E-10 52.0 8.4 68 130-206 4-74 (93)
218 3ffl_A Anaphase-promoting comp 98.1 0.00015 5E-09 52.7 12.9 98 50-157 32-147 (167)
219 3bee_A Putative YFRE protein; 98.0 3.5E-05 1.2E-09 51.0 8.6 68 31-119 3-72 (93)
220 3u64_A Protein TP_0956; tetrat 98.0 0.0043 1.5E-07 49.7 21.1 101 129-262 149-266 (301)
221 3ffl_A Anaphase-promoting comp 97.9 0.00033 1.1E-08 50.9 12.5 102 98-200 28-147 (167)
222 1pc2_A Mitochondria fission pr 97.8 0.0008 2.7E-08 48.4 12.9 86 52-162 12-101 (152)
223 4g26_A Pentatricopeptide repea 97.8 0.00084 2.9E-08 59.0 15.7 121 52-204 84-204 (501)
224 3txn_A 26S proteasome regulato 97.4 0.045 1.6E-06 46.1 23.8 104 98-206 107-212 (394)
225 1nzn_A CGI-135 protein, fissio 97.4 0.0041 1.4E-07 43.1 11.0 91 102-208 13-107 (126)
226 4h7y_A Dual specificity protei 97.0 0.011 3.9E-07 42.0 10.6 90 107-206 36-125 (161)
227 2uy1_A Cleavage stimulation fa 97.0 0.14 4.9E-06 44.7 23.2 188 34-262 213-411 (493)
228 2uy1_A Cleavage stimulation fa 96.6 0.23 7.7E-06 43.5 18.1 167 55-259 196-377 (493)
229 1nzn_A CGI-135 protein, fissio 96.6 0.097 3.3E-06 36.2 12.3 70 32-119 33-103 (126)
230 4b4t_R RPN7, 26S proteasome re 96.5 0.049 1.7E-06 46.7 12.8 111 78-206 129-239 (429)
231 2o8p_A 14-3-3 domain containin 96.4 0.23 7.7E-06 38.0 14.5 102 56-162 96-198 (227)
232 4h7y_A Dual specificity protei 96.3 0.17 6E-06 36.0 12.5 111 26-162 8-124 (161)
233 4b4t_P 26S proteasome regulato 96.3 0.39 1.3E-05 41.3 17.3 103 98-206 145-249 (445)
234 3o48_A Mitochondria fission 1 96.2 0.094 3.2E-06 36.5 10.4 69 131-207 39-110 (134)
235 2br9_A 14-3-3E, 14-3-3 protein 96.1 0.34 1.2E-05 37.5 15.9 58 104-161 144-202 (234)
236 4b4t_P 26S proteasome regulato 96.1 0.56 1.9E-05 40.4 17.3 113 33-164 136-250 (445)
237 3ubw_A 14-3-3E, 14-3-3 protein 96.1 0.21 7.1E-06 39.1 13.0 57 105-161 171-228 (261)
238 4b4t_R RPN7, 26S proteasome re 96.0 0.05 1.7E-06 46.7 10.5 104 130-261 129-234 (429)
239 3uzd_A 14-3-3 protein gamma; s 96.0 0.24 8.1E-06 38.6 13.0 58 104-161 145-203 (248)
240 1o9d_A 14-3-3-like protein C; 96.0 0.41 1.4E-05 37.6 14.7 58 104-161 149-207 (260)
241 1y8m_A FIS1; mitochondria, unk 95.9 0.13 4.3E-06 36.4 10.1 72 130-209 37-111 (144)
242 4gns_B Protein CSD3, chitin bi 95.9 0.2 7E-06 45.9 14.1 124 103-262 261-397 (754)
243 4gns_B Protein CSD3, chitin bi 95.5 0.4 1.4E-05 44.0 14.5 88 105-201 300-397 (754)
244 3efz_A 14-3-3 protein; 14-3-3, 95.5 0.68 2.3E-05 36.4 14.3 107 55-161 115-226 (268)
245 2npm_A 14-3-3 domain containin 95.4 0.71 2.4E-05 36.2 14.7 57 104-161 170-227 (260)
246 1y8m_A FIS1; mitochondria, unk 95.2 0.41 1.4E-05 33.7 10.5 71 78-162 37-107 (144)
247 1ya0_A SMG-7 transcript varian 94.9 0.18 6.2E-06 44.0 10.1 65 133-206 153-217 (497)
248 3o48_A Mitochondria fission 1 94.9 0.59 2E-05 32.5 12.5 70 79-162 39-108 (134)
249 3spa_A Mtrpol, DNA-directed RN 94.9 0.46 1.6E-05 45.0 13.0 94 98-203 135-229 (1134)
250 2o8p_A 14-3-3 domain containin 94.9 0.96 3.3E-05 34.6 16.5 94 113-206 101-199 (227)
251 1ya0_A SMG-7 transcript varian 94.5 0.29 1E-05 42.6 10.3 63 35-119 153-215 (497)
252 3mkq_A Coatomer beta'-subunit; 94.4 0.72 2.5E-05 42.6 13.7 45 101-158 663-707 (814)
253 3spa_A Mtrpol, DNA-directed RN 94.4 1 3.5E-05 42.7 14.1 103 129-262 124-227 (1134)
254 4b4t_S RPN3, 26S proteasome re 94.0 0.1 3.6E-06 45.3 6.3 141 49-206 147-301 (523)
255 3mkq_B Coatomer subunit alpha; 93.6 1.5 5.3E-05 32.2 12.2 46 101-159 16-61 (177)
256 2wpv_A GET4, UPF0363 protein Y 93.6 2.5 8.4E-05 34.3 14.3 130 102-257 25-155 (312)
257 2ff4_A Probable regulatory pro 93.5 3 0.0001 35.0 14.9 111 50-171 127-244 (388)
258 2ff4_A Probable regulatory pro 93.0 1.5 5.3E-05 36.8 12.0 93 142-262 125-231 (388)
259 3mkq_A Coatomer beta'-subunit; 92.4 1.9 6.4E-05 39.8 12.9 44 50-116 664-707 (814)
260 3iqu_A 14-3-3 protein sigma; s 92.4 3 0.0001 32.2 12.2 63 4-69 145-207 (236)
261 3uzd_A 14-3-3 protein gamma; s 92.1 3.4 0.00012 32.1 18.9 74 133-206 122-205 (248)
262 3kae_A CDC27, possible protein 91.9 2.8 9.4E-05 30.6 11.3 93 100-206 43-145 (242)
263 3efz_A 14-3-3 protein; 14-3-3, 90.8 1.4 4.7E-05 34.7 8.3 61 4-67 164-226 (268)
264 3kae_A CDC27, possible protein 90.2 4.2 0.00014 29.7 11.6 89 50-161 45-143 (242)
265 4fhn_B Nucleoporin NUP120; pro 89.9 7.6 0.00026 37.8 14.5 102 37-156 845-962 (1139)
266 4b4t_S RPN3, 26S proteasome re 89.7 0.76 2.6E-05 40.0 6.6 137 101-260 147-294 (523)
267 3re2_A Predicted protein; meni 89.5 7.8 0.00027 31.9 12.1 53 109-164 276-328 (472)
268 3iqu_A 14-3-3 protein sigma; s 88.8 6.8 0.00023 30.2 19.1 73 134-206 125-207 (236)
269 4b4t_O 26S proteasome regulato 88.4 10 0.00036 31.8 14.9 103 101-204 87-198 (393)
270 1o9d_A 14-3-3-like protein C; 88.3 7.9 0.00027 30.4 19.5 73 134-206 127-209 (260)
271 2br9_A 14-3-3E, 14-3-3 protein 88.3 7.4 0.00025 30.0 20.6 73 134-206 122-204 (234)
272 3ubw_A 14-3-3E, 14-3-3 protein 88.2 7.9 0.00027 30.3 20.6 72 135-206 149-230 (261)
273 2npm_A 14-3-3 domain containin 87.1 9.4 0.00032 29.9 20.0 71 135-206 149-229 (260)
274 3u84_A Menin; MLL, JUND, ledgf 87.0 13 0.00043 31.3 12.2 53 109-164 298-350 (550)
275 2wpv_A GET4, UPF0363 protein Y 85.0 14 0.00048 29.9 20.7 94 101-199 64-158 (312)
276 3mkq_B Coatomer subunit alpha; 85.0 5.6 0.00019 29.2 8.0 49 143-205 16-64 (177)
277 2crb_A Nuclear receptor bindin 82.9 4.3 0.00015 25.9 5.7 36 130-165 13-48 (97)
278 2crb_A Nuclear receptor bindin 80.1 5.6 0.00019 25.4 5.4 34 172-206 13-46 (97)
279 4gq4_A Menin; tumor suppressor 78.3 30 0.001 29.2 13.1 54 108-164 282-335 (489)
280 4fhn_B Nucleoporin NUP120; pro 78.1 6.6 0.00023 38.2 8.2 71 135-206 845-930 (1139)
281 4b4t_O 26S proteasome regulato 73.9 39 0.0013 28.3 16.1 103 49-161 87-198 (393)
282 3ax2_A Mitochondrial import re 73.7 6.2 0.00021 24.1 4.3 27 136-162 21-47 (73)
283 1zbp_A Hypothetical protein VP 73.5 31 0.0011 27.2 11.4 96 100-206 7-131 (273)
284 1om2_A Protein (mitochondrial 73.5 10 0.00034 24.6 5.4 27 136-162 24-50 (95)
285 2w2u_A Hypothetical P60 katani 71.9 10 0.00035 23.8 5.2 27 179-206 24-50 (83)
286 2wb7_A PT26-6P; extra chromoso 71.3 46 0.0016 28.7 10.4 43 106-148 448-490 (526)
287 2wvi_A Mitotic checkpoint seri 69.5 25 0.00085 25.4 7.4 83 110-205 43-126 (164)
288 2wb7_A PT26-6P; extra chromoso 69.2 40 0.0014 29.1 9.5 33 55-87 449-481 (526)
289 3lpz_A GET4 (YOR164C homolog); 68.8 47 0.0016 27.2 22.2 45 152-198 115-159 (336)
290 2v6y_A AAA family ATPase, P60 68.3 13 0.00045 23.2 5.2 26 180-206 17-42 (83)
291 1zb1_A BRO1 protein; AIP1, BRO 67.7 54 0.0018 27.4 12.9 124 78-206 121-288 (392)
292 3esl_A Checkpoint serine/threo 67.5 36 0.0012 25.5 11.0 86 13-119 58-144 (202)
293 2w2u_A Hypothetical P60 katani 67.4 20 0.00069 22.4 8.6 23 101-123 30-52 (83)
294 3t5v_B Nuclear mRNA export pro 66.3 19 0.00064 30.9 7.3 103 103-207 139-253 (455)
295 2cpt_A SKD1 protein, vacuolar 64.8 29 0.001 23.4 8.8 24 101-124 29-52 (117)
296 2v6y_A AAA family ATPase, P60 63.3 24 0.0008 22.1 5.6 25 140-164 19-43 (83)
297 2rpa_A Katanin P60 ATPase-cont 63.0 14 0.00048 22.9 4.4 31 135-165 15-45 (78)
298 2v6x_A Vacuolar protein sortin 61.9 23 0.00079 22.1 5.5 29 177-206 16-44 (85)
299 3t5v_B Nuclear mRNA export pro 60.9 69 0.0024 27.5 9.8 63 98-161 184-249 (455)
300 2rpa_A Katanin P60 ATPase-cont 60.8 10 0.00035 23.5 3.5 31 37-71 15-45 (78)
301 2v6x_A Vacuolar protein sortin 60.0 26 0.0009 21.9 5.5 30 136-165 17-46 (85)
302 4aez_C MAD3, mitotic spindle c 60.0 28 0.00096 26.5 6.5 83 110-205 97-180 (223)
303 4gq2_M Nucleoporin NUP120; bet 58.9 58 0.002 31.0 9.9 71 135-206 843-928 (950)
304 1wfd_A Hypothetical protein 15 58.8 24 0.00082 22.6 5.2 29 177-206 18-46 (93)
305 3t5x_A PCI domain-containing p 57.8 38 0.0013 25.3 7.0 36 171-207 11-46 (203)
306 3myv_A SUSD superfamily protei 57.0 18 0.00062 31.0 5.7 34 129-162 187-220 (454)
307 3ax2_A Mitochondrial import re 56.8 19 0.00065 21.9 4.1 28 178-206 21-48 (73)
308 1wy6_A Hypothetical protein ST 56.7 37 0.0013 23.9 6.0 32 173-205 124-155 (172)
309 3re2_A Predicted protein; meni 56.4 85 0.0029 26.0 12.8 71 132-206 255-327 (472)
310 3kez_A Putative sugar binding 56.2 20 0.00068 30.8 5.8 35 128-162 192-226 (461)
311 1vh6_A Flagellar protein FLIS; 51.1 61 0.0021 22.7 7.4 49 137-186 38-86 (145)
312 3ph0_C ASCG; type III secretio 50.6 33 0.0011 19.6 4.4 39 15-58 22-60 (61)
313 1om2_A Protein (mitochondrial 49.1 34 0.0012 22.0 4.6 29 178-207 24-52 (95)
314 3t5x_A PCI domain-containing p 47.7 63 0.0022 24.1 6.8 34 129-162 11-44 (203)
315 1wfd_A Hypothetical protein 15 46.3 55 0.0019 20.9 9.4 23 101-123 26-48 (93)
316 2wvi_A Mitotic checkpoint seri 46.1 78 0.0027 22.8 6.6 32 130-161 94-125 (164)
317 4a5x_A MITD1, MIT domain-conta 46.1 53 0.0018 20.6 7.9 30 176-206 18-47 (86)
318 4a5x_A MITD1, MIT domain-conta 45.5 54 0.0019 20.6 8.6 34 133-166 17-50 (86)
319 3mcx_A SUSD superfamily protei 45.1 23 0.0008 30.5 4.5 33 129-161 199-231 (477)
320 2cpt_A SKD1 protein, vacuolar 43.8 71 0.0024 21.4 8.6 28 139-166 25-52 (117)
321 3lpz_A GET4 (YOR164C homolog); 43.3 1.3E+02 0.0046 24.5 26.0 94 110-205 115-217 (336)
322 3myv_A SUSD superfamily protei 42.7 40 0.0014 28.8 5.6 34 170-204 186-219 (454)
323 3iqc_A FLIS, flagellar protein 41.9 82 0.0028 21.6 9.7 50 137-186 41-91 (131)
324 4ady_A RPN2, 26S proteasome re 41.8 2.4E+02 0.0082 26.9 13.5 178 25-262 367-550 (963)
325 2a9u_A Ubiquitin carboxyl-term 41.4 89 0.0031 21.9 6.4 42 132-175 42-83 (144)
326 4gq2_M Nucleoporin NUP120; bet 41.3 1.6E+02 0.0055 28.0 9.9 65 98-162 848-927 (950)
327 3kez_A Putative sugar binding 41.0 44 0.0015 28.6 5.6 34 170-204 192-225 (461)
328 4a1g_A Mitotic checkpoint seri 40.9 94 0.0032 22.0 9.4 84 109-205 47-131 (152)
329 3snx_A SUSD homolog, putative 40.8 45 0.0015 28.6 5.6 32 129-160 188-219 (460)
330 1wy6_A Hypothetical protein ST 40.0 96 0.0033 21.8 6.3 30 131-160 124-153 (172)
331 3u84_A Menin; MLL, JUND, ledgf 38.1 1.9E+02 0.0064 24.6 13.5 53 150-206 297-349 (550)
332 2vkj_A TM1634; membrane protei 38.0 76 0.0026 20.1 6.9 39 98-142 61-100 (106)
333 1zbp_A Hypothetical protein VP 36.2 1.6E+02 0.0054 23.2 12.0 110 142-262 7-126 (273)
334 3lew_A SUSD-like carbohydrate 35.7 70 0.0024 27.7 6.1 33 129-161 200-232 (495)
335 2wm9_A Dedicator of cytokinesi 35.6 2E+02 0.0069 24.3 11.0 21 98-118 19-39 (428)
336 1qsa_A Protein (soluble lytic 35.5 2.4E+02 0.0084 25.2 13.1 121 51-203 227-347 (618)
337 2dl1_A Spartin; SPG20, MIT, st 33.3 1.1E+02 0.0037 20.5 8.7 20 103-122 35-54 (116)
338 3snx_A SUSD homolog, putative 33.0 67 0.0023 27.5 5.4 32 171-203 188-219 (460)
339 2ijq_A Hypothetical protein; s 31.7 67 0.0023 23.0 4.3 65 98-165 40-108 (161)
340 3mcx_A SUSD superfamily protei 31.2 52 0.0018 28.3 4.5 33 171-204 199-231 (477)
341 3jq1_A SUSD superfamily protei 29.4 48 0.0017 28.6 4.0 31 130-160 178-208 (481)
342 4gq4_A Menin; tumor suppressor 28.9 2.7E+02 0.0091 23.6 14.7 71 132-206 262-334 (489)
343 3hdx_A SUSD homolog, SUSD supe 28.8 95 0.0033 26.6 5.7 32 130-161 195-226 (478)
344 3r9m_A BRO1 domain-containing 28.6 2.5E+02 0.0085 23.2 14.9 32 174-206 253-284 (376)
345 2cwy_A Hypothetical protein TT 27.6 1.2E+02 0.0042 19.3 5.0 63 99-165 10-72 (94)
346 3esl_A Checkpoint serine/threo 27.0 2E+02 0.0067 21.5 16.4 87 111-205 58-145 (202)
347 2xze_A STAM-binding protein; h 26.2 1.6E+02 0.0053 20.6 5.4 33 173-206 39-71 (146)
348 3qnk_A Putative lipoprotein; a 25.8 1.1E+02 0.0038 26.5 5.7 32 129-160 179-210 (517)
349 3lew_A SUSD-like carbohydrate 23.3 1.5E+02 0.0052 25.5 6.0 33 171-204 200-232 (495)
350 4aez_C MAD3, mitotic spindle c 23.0 2.5E+02 0.0086 21.3 10.6 82 58-161 97-179 (223)
351 3i4g_A SUSD-like carbohydrate 22.1 1.7E+02 0.0057 25.6 6.0 32 130-161 196-227 (528)
352 2vkj_A TM1634; membrane protei 22.0 1.6E+02 0.0054 18.6 7.2 46 132-183 53-99 (106)
353 2a9u_A Ubiquitin carboxyl-term 21.7 2.1E+02 0.0072 20.0 5.8 41 33-79 41-81 (144)
354 2xze_A STAM-binding protein; h 21.0 1.9E+02 0.0066 20.2 5.1 40 132-172 40-79 (146)
355 4a1g_A Mitotic checkpoint seri 20.9 2.3E+02 0.0078 20.0 9.3 32 130-161 99-130 (152)
356 1qsa_A Protein (soluble lytic 20.6 4.6E+02 0.016 23.4 14.0 52 101-160 296-347 (618)
No 1
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.96 E-value=1.1e-25 Score=183.80 Aligned_cols=242 Identities=21% Similarity=0.183 Sum_probs=207.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
.-.+.|+.+|++|++++++..+.++|..+.++..+|.++ ...|++++|+.++++++++.+...++++|....++.+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY----RDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 446789999999999999999989999999999999877 5999999999999999999998888888999999999
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+| .++...|++++|+.++++++.+.++..++++|....++.++|.++..+|++++|+.++++++++.+..
T Consensus 91 l~----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 91 LA----------VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HH----------HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HH----------HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 99 77799999999999999999999988888889999999999999999999999999999999999998
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh------hhhhhhhhhhhhH-------------HH--
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK------LFSASYSGLEYHY-------------RD-- 224 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~l~~~~-------------~a-- 224 (303)
.++++|....++.++|.++. .+|++++|+.++++++.+.+..+ .....+..++... ++
T Consensus 161 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYL-KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred cCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 88889999999999999997 99999999999999999876422 1222222222111 11
Q ss_pred -HhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 -LKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 -~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....+..+|....++..+|.+|...|++++|..+++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 13334456788889999999999999999999965443
No 2
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.3e-23 Score=172.50 Aligned_cols=244 Identities=20% Similarity=0.194 Sum_probs=203.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
....++.|..++++++++.....++++|..+.++..+|.++ ...|++++|+.++++++++.+...+++++....++
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY----RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34567899999999999999988788999999999999877 59999999999999999999887777788889999
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.++| .++...|++++|+.++++++++.++..+++++....++.++|.++...|++++|+.++++++++.+
T Consensus 115 ~~l~----------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 115 NNLA----------VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp HHHH----------HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH----------HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999 777999999999999999999998887888899999999999999999999999999999999998
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh------hhhhhhhhhhhhH-------------H-
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK------LFSASYSGLEYHY-------------R- 223 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~l~~~~-------------~- 223 (303)
...++++|....++..+|.++. ..|++++|+.++++++.+.+... .....+.....+. +
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYL-KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 8888888999999999999997 99999999999999999876321 1111111111111 0
Q ss_pred --HHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 224 --DLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 224 --a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
........+|....++..+|.+|...|++++|.++++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 112223356778889999999999999999999965444
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=1.4e-22 Score=173.56 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=194.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|+..|++|+++.+.. ++++..+.++..+|.++ ...|++++|+.++++|+++.+.. +...+..+.++.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~----~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~ 188 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESY----YYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHS 188 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 345677888888888776553 56677899999999877 59999999999999999999875 223667889999
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++| .+|...|++++|+.++++++++.++. ++++..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus 189 ~lg----------~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 189 LFA----------TNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 999 77799999999999999999998875 567788899999999999999999999999999999877
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh--hhhhhhhhhhh-------hh---hHHHHhhhc--c
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN--LKLFSASYSGL-------EY---HYRDLKLFS--A 230 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~l-------~~---~~~a~~~~~--~ 230 (303)
. .+.|....++.++|.++. .+|++++|+.++++++.+.+. +|.....+..+ +. +.+|+..+. .
T Consensus 257 ~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~ 333 (383)
T 3ulq_A 257 S--NILPSLPQAYFLITQIHY-KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM 333 (383)
T ss_dssp T--TCGGGHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT
T ss_pred h--ccchhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc
Confidence 4 333777899999999997 999999999999999999874 23222222223 22 445553332 3
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHhhhhc
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEWKILRETNEL 274 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 274 (303)
..+....++..+|.+|...|++++|.++++.+ ..+.++...
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a---l~~~~~i~~ 374 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKV---EQVRQLIQG 374 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHHHTSCSS
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHhhc
Confidence 34567778899999999999999999966554 344444333
No 4
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=4.4e-22 Score=164.75 Aligned_cols=205 Identities=23% Similarity=0.296 Sum_probs=185.8
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh
Q psy4339 26 FGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF 105 (303)
Q Consensus 26 ~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~ 105 (303)
.++++|..+.++..+|.++ ...|++++|+.++++++++.....+++++....++..+| .++...|+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la----------~~~~~~g~ 84 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQY----ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA----------LVYRDQNK 84 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH----------HHHHHTTC
T ss_pred CCCcchHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----------HHHHHCCC
Confidence 4678899999999999877 599999999999999999988876667788889999999 77799999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
+++|+.++++++.+.++..+++++....++.++|.++...|++++|+.++++++++.+...+++++....++.++|.++.
T Consensus 85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999988877888999999999999999999999999999999999998888888999999999999997
Q ss_pred HhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHH
Q psy4339 186 YHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSE 264 (303)
Q Consensus 186 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~ 264 (303)
..|++++|+.++++++.+.. ...+..+|....++..+|.++...|++++|..++ +.+..
T Consensus 165 -~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 165 -NQGKYEEVEYYYQRALEIYQ-------------------TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp -TTTCHHHHHHHHHHHHHHHH-------------------HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HcCCHHHHHHHHHHHHHHHH-------------------HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999987 5556667788889999999999999999999955 55533
No 5
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.91 E-value=5.8e-22 Score=169.40 Aligned_cols=242 Identities=17% Similarity=0.048 Sum_probs=190.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|+..|++|+++.... ++.+..+.++.++|.++ ...|++++|+.++++|+++.+... ...+..+.++.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y----~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~ 186 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAY----YHMKQTHVSMYHILQALDIYQNHP-LYSIRTIQSLF 186 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHTST-TCHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHH----HHcCCcHHHHHHHHHHHHHHHhCC-CchhhHHHHHH
Confidence 345677888888888876653 45688999999999877 599999999999999999988742 22456788999
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++| .+|...|++++|++++++++++.++. ++.+..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus 187 ~lg----------~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 187 VIA----------GNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 999 77799999999999999999998765 455677889999999999999999999999999999877
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh--hhhhhhhhhhhh-------h---hHHHHhhhcc--
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN--LKLFSASYSGLE-------Y---HYRDLKLFSA-- 230 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~l~-------~---~~~a~~~~~~-- 230 (303)
. .+|....++.++|.++. .+|++++|+.++++++.+.+. ++.....+..++ . +.+|+..+..
T Consensus 255 ~---~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 255 K---VPDLLPKVLFGLSWTLC-KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp H---CGGGHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred h---CChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 4 34666889999999997 999999999999999998774 222222222221 2 4455543322
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHHHHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSEWKILR 269 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~~~~~~ 269 (303)
..+.....+..+|.+|...|++++|..++ +++...+.+.
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34566778889999999999999999955 5544444443
No 6
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.90 E-value=2.2e-21 Score=158.14 Aligned_cols=185 Identities=22% Similarity=0.251 Sum_probs=170.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|+.+|+++++++++..+.++|..+.++..+| .++...|++++|+.++++++++.++..++++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILA----------LVYRDQNKYKEAAHLLNDALAIREKTLGKDH 81 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----------HHHHHcccHHHHHHHHHHHHHHHHHHcCCcc
Confidence 578999999999999999999987778888999999999 7779999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
|....++.++|.+|..+|++++|+.++++++.+.++..++++|....++.++|.++. ..|++++|+.++++++.+..
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~-- 158 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYA-- 158 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999888888999999999999997 99999999999999999987
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLS 263 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~ 263 (303)
...+..+|....++..+|.++...|++++|..++ +.+.
T Consensus 159 -----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 159 -----------------TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp -----------------HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------------HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666777888899999999999999999999955 4443
No 7
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=5.3e-20 Score=158.57 Aligned_cols=243 Identities=16% Similarity=0.138 Sum_probs=195.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
....++.|+.+|++++++.+.. .+++..+.++..+|.++ ...|++++|+.++++++++.... .+.+....++
T Consensus 98 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 169 (411)
T 4a1s_A 98 YLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTL----KVMGRFDEAAICCERHLTLARQL--GDRLSEGRAL 169 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHH
Confidence 3456788999999999998775 56788999999999877 59999999999999999998875 4567788899
Q ss_pred HHHHHHHHHHhhhhHHHHhhhh-----------------HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh
Q psy4339 84 RVKALILEEIALDSNELISVQF-----------------YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ 146 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 146 (303)
.++| .+|...|+ +++|+.++++++++.... .+++....++.++|.++..+|
T Consensus 170 ~~l~----------~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g 237 (411)
T 4a1s_A 170 YNLG----------NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLG 237 (411)
T ss_dssp HHHH----------HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH----------HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcC
Confidence 9999 66689999 999999999999998775 456778889999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---h-------hhhhhh
Q psy4339 147 KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---L-------FSASYS 216 (303)
Q Consensus 147 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~-------~~~~~~ 216 (303)
++++|+.++++++++.... .+.+....++.++|.+|. .+|++++|+.++++++.+.+... . ++..+.
T Consensus 238 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998775 455667788999999997 99999999999999999888431 2 233333
Q ss_pred hhhhhHHHH-------hhhc--cccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHHHHH
Q psy4339 217 GLEYHYRDL-------KLFS--ASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWKILR 269 (303)
Q Consensus 217 ~l~~~~~a~-------~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~ 269 (303)
..+.+.+|. .... ...+....++..+|.++...|++++|.. +.+++....+++
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 333344443 2211 1233456789999999999999999999 556665554443
No 8
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=2.5e-21 Score=152.69 Aligned_cols=182 Identities=16% Similarity=0.029 Sum_probs=141.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
+.++.|+..|++++++ +|..+.++..+|.++ ...|++++|+..+++++++ +|....++.+
T Consensus 19 g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~ 78 (217)
T 2pl2_A 19 GRYDAALTLFERALKE--------NPQDPEALYWLARTQ----LKLGLVNPALENGKTLVAR--------TPRYLGGYMV 78 (217)
T ss_dssp TCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCcHHHHHH
Confidence 3445555555555543 566778999999877 5999999999999999998 5666788899
Q ss_pred HHHHHHHHhhhhHHHHhh-----------hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 86 KALILEEIALDSNELISV-----------QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
+| .++... |++++|+..+++++++ .|....++.++|.++..+|++++|+..
T Consensus 79 lg----------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 79 LS----------EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HH----------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HH----------HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 99 666788 9999999999999996 355567889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG 234 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~ 234 (303)
|++++++. ....++.++|.++. .+|++++|+..|++++++.| .
T Consensus 141 ~~~al~~~---------~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~P---------------------------~ 183 (217)
T 2pl2_A 141 LKQALALE---------DTPEIRSALAELYL-SMGRLDEALAQYAKALEQAP---------------------------K 183 (217)
T ss_dssp HHHHHHHC---------CCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHST---------------------------T
T ss_pred HHHHHhcc---------cchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC---------------------------C
Confidence 99999873 12456889999997 99999999999999998877 4
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 235 LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
...++.++|.++...|++++|++.++..
T Consensus 184 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 184 DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp CHHHHHHHHHHHTC--------------
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5567899999999999999999966554
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=1e-19 Score=156.02 Aligned_cols=241 Identities=16% Similarity=0.176 Sum_probs=194.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|..++++++++.... .+.|..+.++..+|.++ ...|++++|+.++++++++.... .+.+..+.++.
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~ 131 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTL----KVLGNFDEAIVCCQRHLDISREL--NDKVGEARALY 131 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHH
Confidence 456788999999999988775 46788899999999877 59999999999999999998875 34455778899
Q ss_pred HHHHHHHHHhhhhHHHHhhhh--------------------HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQF--------------------YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
++| .+|...|+ +++|+.++.+++.+.+.. ++++....++.++|.++..
T Consensus 132 ~l~----------~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 132 NLG----------NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp HHH----------HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHH
Confidence 999 66689999 999999999999998875 5677888999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---hhhhhhhhh---
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---LFSASYSGL--- 218 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~l--- 218 (303)
+|++++|+.++++++++.... ++++..+.++.++|.++. ..|++++|+.++++++.+.++.+ ....++..+
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 999999999999999998774 555677889999999997 99999999999999999887532 223333333
Q ss_pred ----hhhHHHH-------hhhcc--ccccHHHHHHhHHHHHHhhhcHHHHHHH-HHHHHHHHHH
Q psy4339 219 ----EYHYRDL-------KLFSA--SYSGLEYDYRGLIHVYECLENFEKMTEF-TNKLSEWKIL 268 (303)
Q Consensus 219 ----~~~~~a~-------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~~~ 268 (303)
+.+.+|+ ..... +.+....++..+|.++...|++++|..+ .+++......
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3444443 22222 2444678899999999999999999994 5566555544
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=2.1e-19 Score=149.74 Aligned_cols=235 Identities=17% Similarity=0.200 Sum_probs=184.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|..++++++++.... .+.+..+.++..+|.++ ...|++++|+.++++++++.... ++.+..+.++.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~ 127 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTL----KVLGNFDEAIVCCQRHLDISREL--NDKVGEARALY 127 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHH----HHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 456788999999999988876 46778899999999877 59999999999999999998875 34555778889
Q ss_pred HHHHHHHHHhhhhHHHHhhhh--------------------HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQF--------------------YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
.+| .++...|+ +++|+.++++++.+.+.. ++.+....++.++|.++..
T Consensus 128 ~l~----------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 128 NLG----------NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp HHH----------HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH
Confidence 999 66688999 999999999999988765 4567778899999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh---hh-------hhhh
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL---KL-------FSAS 214 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~---~~-------~~~~ 214 (303)
.|++++|+.++++++++.... ++++....++.++|.++. ..|++++|+.++++++.+.++. +. ++..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 999999999999999998775 455677889999999997 9999999999999999988742 11 2222
Q ss_pred hhhhhhhHHHH-------hhhc--cccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 215 YSGLEYHYRDL-------KLFS--ASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 215 ~~~l~~~~~a~-------~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
+...+.+.+|. .... ...+....++..+|.++...|++++|..++ +++
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 22333333333 2211 123345667778888888888888888844 444
No 11
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=3.1e-21 Score=176.44 Aligned_cols=172 Identities=20% Similarity=0.192 Sum_probs=152.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
..|+.+.++.+||.++ ..+|++++|+.+|++|+++ +|....++.++| .+|..+|++++
T Consensus 4 s~P~~a~al~nLG~~~----~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg----------~~l~~~g~~~e 61 (723)
T 4gyw_A 4 SCPTHADSLNNLANIK----REQGNIEEAVRLYRKALEV--------FPEFAAAHSNLA----------SVLQQQGKLQE 61 (723)
T ss_dssp --CHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHH----------HHHHHTTCHHH
T ss_pred CCCCcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCCHHH
Confidence 4688999999999877 6999999999999999998 566778999999 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+..|++|+++ .|....++.++|.++..+|++++|+++|++|+++. |....++.++|.+|. .+
T Consensus 62 A~~~~~~Al~l--------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~-~~ 124 (723)
T 4gyw_A 62 ALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHK-DS 124 (723)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-Hc
Confidence 99999999997 45667889999999999999999999999999874 566788999999997 99
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHH
Q psy4339 189 LEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWK 266 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~ 266 (303)
|++++|+.+|++++++.| +...++.++|.++...|++++|.+ +.+.+....
T Consensus 125 g~~~eAi~~~~~Al~l~P---------------------------~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 125 GNIPEAIASYRTALKLKP---------------------------DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp TCHHHHHHHHHHHHHHCS---------------------------CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC---------------------------CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 999999999999999887 566779999999999999999999 555554433
No 12
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=9.2e-20 Score=156.36 Aligned_cols=235 Identities=17% Similarity=0.219 Sum_probs=185.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc--------------------HHHHHHHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR--------------------FTESRRHAEKA 64 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~--------------------~~~A~~~~~~a 64 (303)
.+-++.|...+++++++.... .+.+..+.++..+|.++ ...|+ +++|+.++.++
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~----~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVY----HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH----HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHH----HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 456788999999999998876 35567788999999877 58999 99999999999
Q ss_pred HHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 65 IQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
+.+.... .+.+..+.++.++| .++...|++++|+.++++++.+..+. ++++....++.++|.++..
T Consensus 174 l~~~~~~--~~~~~~~~~~~~la----------~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 174 LSLVTAL--GDRAAQGRAFGNLG----------NTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHH----------HHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--cCcHHHHHHHHHHH----------HHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHH
Confidence 9998875 45677888999999 77799999999999999999998764 4566777899999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh---hh-------hhhh
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL---KL-------FSAS 214 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~---~~-------~~~~ 214 (303)
+|++++|+.++++++.+.... ++++....++.++|.++. ..|++++|+.++++++.+.+.. +. ++.+
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999999998764 455667889999999997 9999999999999999987743 22 3333
Q ss_pred hhhhhhhHHHH-------hhhcc--ccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 215 YSGLEYHYRDL-------KLFSA--SYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 215 ~~~l~~~~~a~-------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
+...+.+.+|. +.... ..+....++..+|.++...|+...+.. +.+..
T Consensus 317 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 374 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSEN 374 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 33334444443 22222 245577889999999999999998887 55555
No 13
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.88 E-value=8.1e-21 Score=165.96 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=141.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+|+|++|+..+++++++.++.+|++||..+.+++++| .+|..+|+|++|+.++++++++.++.+|++|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa----------~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIAS----------EVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 589999999999999999999999999999999999999 7779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
|.++.++++||.+|..+|++++|+.++++|+++.+..+|++||.+.....+++.++. .+|++++|+..|.++.+-+
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~-e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM-ELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 9999999999999987644
No 14
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=1.1e-19 Score=151.35 Aligned_cols=180 Identities=17% Similarity=0.260 Sum_probs=156.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc--------------------HHHHHHHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR--------------------FTESRRHAEKA 64 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~--------------------~~~A~~~~~~a 64 (303)
...++.|...+.+++++.... .+.+..+.++..+|.++ ...|+ +++|+.+++++
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVY----HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHH----HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 456788999999999998874 45667788999999877 58999 99999999999
Q ss_pred HHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q psy4339 65 IQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS 144 (303)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 144 (303)
+.+.+.. .+.+....++.++| .++...|++++|+.++++++++.... ++++....++.++|.++..
T Consensus 170 ~~~~~~~--~~~~~~~~~~~~l~----------~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 170 LSLVTAL--GDRAAQGRAFGNLG----------NTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHH--TCHHHHHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCHHHHHHHHHHHH----------HHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHH
Confidence 9998775 45566788899999 77799999999999999999998764 4566777899999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.|++++|+.++++++.+.... .+++....++..+|.++. ..|++++|+.++++++.+.+.
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998764 456667889999999997 999999999999999998874
No 15
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=2.1e-19 Score=154.74 Aligned_cols=238 Identities=16% Similarity=0.182 Sum_probs=189.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENL-QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
...++.|+.+|++++++ .++++ ..+.++..+|.++ ...|++++|+.++++++++.+.. .+.+....++
T Consensus 61 ~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 129 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAY----FYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSS 129 (411)
T ss_dssp TTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHH
Confidence 45677888888888876 33444 4568999999877 58999999999999999998875 4567788999
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhc----------------
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQK---------------- 147 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---------------- 147 (303)
..+| .+|...|++++|+.++++++.+..+. .+++....++.++|.+|...|+
T Consensus 130 ~~l~----------~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 130 GNLG----------NTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp HHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred HHHH----------HHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 9999 77799999999999999999998875 4667888999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh---h-------hhhhhh
Q psy4339 148 -FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK---L-------FSASYS 216 (303)
Q Consensus 148 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~---~-------~~~~~~ 216 (303)
+++|+.++++++++.+.. .+++....++.++|.++. ..|++++|+.++++++.+.+..+ . ++..+.
T Consensus 198 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYY-LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999999999998776 556778889999999997 99999999999999999988532 2 233333
Q ss_pred hhhhhHHHH-------hhhcc--ccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHHHHHHH
Q psy4339 217 GLEYHYRDL-------KLFSA--SYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLSEWKIL 268 (303)
Q Consensus 217 ~l~~~~~a~-------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~~~~~~ 268 (303)
..+.+.+|+ ..... ..+....++..+|.++...|++++|..++ +.+......
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 334444443 22221 22245788999999999999999999955 555444433
No 16
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.87 E-value=7.1e-20 Score=152.03 Aligned_cols=215 Identities=12% Similarity=0.069 Sum_probs=173.0
Q ss_pred hhhHhHHHHHHHHHHHHHHH-Hh--CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH
Q psy4339 5 KILLKNLSLCSQLALKLKQV-LF--GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS 81 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (303)
..-++.|.+++++|.+.... .+ +++.......+...|.++ ...|++++|+.+|.+++++.... .+.+..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~ 77 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAF----KNAKQLEQAKDAYLQEAEAHANN--RSLFHAAK 77 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHH
Confidence 34567899999999887653 22 345556667788888666 69999999999999999998875 34455788
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 82 AHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 82 ~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
++.++| .+|..+|++++|+.+|++++++..+. .+....+.++.++|.+|.. |++++|+.+|++|+++
T Consensus 78 ~~~~lg----------~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 78 AFEQAG----------MMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHHHH----------HHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHH----------HHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 999999 67799999999999999999998764 3445567899999999999 9999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHh
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRG 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~ 241 (303)
.... .+.+....++.++|.+|. .+|++++|+.+|++++.+.+ ... ..+....++..
T Consensus 145 ~~~~--~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~-------------------~~~--~~~~~~~~~~~ 200 (307)
T 2ifu_A 145 FENE--ERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYK-------------------EME--NYPTCYKKCIA 200 (307)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HTT--CHHHHHHHHHH
T ss_pred HHhC--CChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH-------------------HcC--ChhHHHHHHHH
Confidence 8763 344556788999999997 99999999999999999988 211 12234557788
Q ss_pred HHHHHHhhhcHHHHHHHHHHH
Q psy4339 242 LIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 242 la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|.++..+|++++|+.+++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 888888889999998866544
No 17
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=5.5e-20 Score=157.35 Aligned_cols=189 Identities=11% Similarity=0.090 Sum_probs=161.3
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN 115 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 115 (303)
.+..+|..+ ...|++++|+.++++++++.+.. ++.+..+.++.++| .+|...|++++|+.++++
T Consensus 105 ~~~~~g~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg----------~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 105 FNFFRGMYE----LDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMS----------ESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHHHHH----HHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH----HHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHH
Confidence 444588666 59999999999999999987664 45666889999999 777999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHH
Q psy4339 116 ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195 (303)
Q Consensus 116 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~ 195 (303)
|+++.++. +...+..+.++.++|.+|..+|++++|+.++++++++.++. ++++..+.++.++|.+|. .+|++++|+
T Consensus 169 al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~-~~g~~~~A~ 244 (383)
T 3ulq_A 169 AYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKN-SQSQYEDAI 244 (383)
T ss_dssp HHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHH-HCCCHHHHH
Confidence 99998875 22267788999999999999999999999999999998875 567788889999999997 999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccc-ccHHHHHHhHHHHHHhhhcHHHHHHH-HHHHHHHH
Q psy4339 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASY-SGLEYDYRGLIHVYECLENFEKMTEF-TNKLSEWK 266 (303)
Q Consensus 196 ~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~ 266 (303)
.++++++.+.+ . ... |....++.++|.++...|++++|.++ .+++....
T Consensus 245 ~~~~~al~~~~-------------------~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 245 PYFKRAIAVFE-------------------E---SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHH-------------------H---TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------h---hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999887 2 223 56788899999999999999999994 45554443
No 18
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.87 E-value=9.5e-20 Score=150.19 Aligned_cols=211 Identities=12% Similarity=-0.105 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHH------HhCC---C-cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhh
Q psy4339 10 NLSLCSQLALKLKQV------LFGS---E-NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLL 79 (303)
Q Consensus 10 ~a~~~~~~al~~~~~------~~~~---~-~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (303)
.|.+++.+|.+..+. .++. + .......+...|.++ ...|+|++|+.+|.+++++.... .+.+..
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~ 76 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIY----RLRKELNLAGDSFLKAADYQKKA--GNEDEA 76 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHH----HHTTCTHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHh--CCHHHH
Confidence 466667777666542 3332 2 233456677777655 68999999999999999998775 344557
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-QKFDEAERMQLKA 158 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a 158 (303)
+.++.++| .+|...|++++|+.+|++|+.+..+. ++....+.++.++|.+|... |++++|+.+|++|
T Consensus 77 a~~~~~lg----------~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 77 GNTYVEAY----------KCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 88999999 77799999999999999999998764 34555678899999999996 9999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHH
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYD 238 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~ 238 (303)
+++.... .+.+....++.++|.++. .+|++++|+.+|++++.+.+ .. .........+
T Consensus 145 l~~~~~~--~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~-------------------~~-~~~~~~~~~~ 201 (292)
T 1qqe_A 145 GEWYAQD--QSVALSNKCFIKCADLKA-LDGQYIEASDIYSKLIKSSM-------------------GN-RLSQWSLKDY 201 (292)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTS-------------------SC-TTTGGGHHHH
T ss_pred HHHHHhC--CChHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHh-------------------cC-CcccHHHHHH
Confidence 9998653 233445678999999997 99999999999999999887 11 1111234457
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 239 YRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
+.++|.++...|++++|+.+++.
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88999999999999999995543
No 19
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.86 E-value=2.8e-20 Score=162.58 Aligned_cols=145 Identities=13% Similarity=0.077 Sum_probs=138.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+..+|+|++|+..+++++++.++.+|++||.++.++++||.+|..+|+|++|+.++++++++.++.+|++||.++.++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
++||.+|. .+|++++|+.++++|+.+.. ..+|++||.+.....+++.++..+|.+++|..
T Consensus 397 ~nLa~~~~-~~G~~~eA~~~~~~Al~i~~-------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 397 MRAGLTNW-HAGHIEVGHGMICKAYAILL-------------------VTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHHH-------------------HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 99999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHH
Q psy4339 258 FTNKL 262 (303)
Q Consensus 258 ~~~~~ 262 (303)
.++.+
T Consensus 457 ~~~~~ 461 (490)
T 3n71_A 457 MYHKM 461 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 20
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=9.8e-20 Score=155.57 Aligned_cols=187 Identities=12% Similarity=0.064 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
...+..+|..+ ...|++++|+.+|++|+++.+.. ++.+..+.++.++| .+|...|++++|+.++
T Consensus 101 ~~~~~~~g~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg----------~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 101 YYSLFFRGMYE----FDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVA----------EAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHH----------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHH----------HHHHHcCCcHHHHHHH
Confidence 34667788655 69999999999999999987764 45677889999999 7779999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~ 193 (303)
++|+++.++.. ...+..+.++.++|.+|..+|++++|++++++++++.++. ++.+..+.++.++|.+|. .+|++++
T Consensus 165 ~~al~~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~-~~~~~~~ 240 (378)
T 3q15_A 165 LQALDIYQNHP-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYD-RSGDDQM 240 (378)
T ss_dssp HHHHHHHHTST-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HHTCHHH
T ss_pred HHHHHHHHhCC-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH-HCCCHHH
Confidence 99999987641 2245678899999999999999999999999999998775 455677889999999997 9999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 194 AEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 194 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
|+.++++++.+.+ . ..+|....++.++|.++...|++++|..+++..
T Consensus 241 A~~~~~~al~~~~-------------------~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 241 AVEHFQKAAKVSR-------------------E---KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHHHHHHH-------------------H---HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------h---hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887 2 244556888999999999999999999955443
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=3.5e-20 Score=142.01 Aligned_cols=165 Identities=17% Similarity=0.167 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
+.+.++.++|.++ ..+|+|++|+.+|++++++ +|....++..+| .+|...|++++|+.
T Consensus 3 e~~~iy~~lG~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la----------~~~~~~~~~~~a~~ 60 (184)
T 3vtx_A 3 ETTTIYMDIGDKK----RTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLG----------KTYMDIGLPNDAIE 60 (184)
T ss_dssp -CHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHCCCHHHHHH
Confidence 3467899999887 6999999999999999988 566678899999 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.+.+++.. .|....++..+|.++...+++++|...+.+++.+. |....++..+|.++. .+|++
T Consensus 61 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~-~~g~~ 123 (184)
T 3vtx_A 61 SLKKFVVL--------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYD-SMGEH 123 (184)
T ss_dssp HHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHhc--------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHH-HhCCc
Confidence 99999885 33445678899999999999999999999998764 445567899999997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
++|+..|++++++.| ....++.++|.+|..+|++++|++++ +++
T Consensus 124 ~~A~~~~~~~l~~~p---------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 124 DKAIEAYEKTISIKP---------------------------GFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcc---------------------------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999998877 45667999999999999999999955 444
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=2.8e-19 Score=151.70 Aligned_cols=221 Identities=10% Similarity=-0.057 Sum_probs=158.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|+.+|+++++. .|..+.++..+|.++ ...|++++|+.+|++++++ +|....++.
T Consensus 78 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 137 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQ----AENENEQAAIVALQRCLEL--------QPNNLKALM 137 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhc--------CCCCHHHHH
Confidence 44567777778877765 355678899999877 5999999999999999987 455567889
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV--QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
++| .+|...|++++|+.++++++++.......... .....+..+|.++...|++++|+.++++++++.
T Consensus 138 ~l~----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 138 ALA----------VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred HHH----------HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 999 77799999999999999999974432111000 123445667999999999999999999998863
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhh---ccccccH
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLF---SASYSGL 235 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~---~~~~~~~ 235 (303)
++.. ...++.++|.++. ..|++++|+.++++++++.|+++ .++.++...+.+.+|+..+ ...+|..
T Consensus 208 -----p~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 208 -----GDMI-DPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp -----CSSC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -----cCcc-CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 2210 3457889999997 99999999999999999888654 2455555555555665322 2235666
Q ss_pred HHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 236 EYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..++.++|.++...|++++|..+++.+
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 788999999999999999999955444
No 23
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=7.5e-19 Score=144.78 Aligned_cols=211 Identities=12% Similarity=-0.065 Sum_probs=157.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|...|.+|+++..+. .+.+..+.++.++|.++ ..+|++++|+.+|++|+++.... ++....+.++.
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~----~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~ 121 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCF----KSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKF 121 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 345678888888888887764 34556789999999877 69999999999999999998764 33444678899
Q ss_pred HHHHHHHHHhhhhHHHHhh-hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISV-QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
++| .+|... |++++|+.+|++|+++.+.. .+.+....++.++|.++..+|++++|+.+|++++++..
T Consensus 122 ~lg----------~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 122 ELG----------EILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHH----------HHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHH----------HHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 999 666886 99999999999999998753 23334567899999999999999999999999998752
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHH
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLI 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la 243 (303)
.. +........++.++|.++. .+|++++|+.++++++.+.| ... .......+..++
T Consensus 190 ~~-~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p-------------------~~~---~~~~~~~l~~l~ 245 (292)
T 1qqe_A 190 GN-RLSQWSLKDYFLKKGLCQL-AATDAVAAARTLQEGQSEDP-------------------NFA---DSRESNFLKSLI 245 (292)
T ss_dssp SC-TTTGGGHHHHHHHHHHHHH-HTTCHHHHHHHHHGGGCC-------------------------------HHHHHHHH
T ss_pred cC-CcccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC-------------------CCC---CcHHHHHHHHHH
Confidence 21 0001134557899999997 99999999999999999888 211 111223455566
Q ss_pred HHHH--hhhcHHHHHHHH
Q psy4339 244 HVYE--CLENFEKMTEFT 259 (303)
Q Consensus 244 ~~~~--~~g~~~~A~~~~ 259 (303)
..+. ..+++++|+..+
T Consensus 246 ~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHTTCTTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh
Confidence 6664 456677777643
No 24
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.84 E-value=3.2e-19 Score=152.66 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+.++..+|.++ ...|++++|+..|++++++ +|....++.++| .++...|++++|+..
T Consensus 168 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 168 FAVAWSNLGCVF----NAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLG----------NVLKEARIFDRAVAA 225 (388)
T ss_dssp CHHHHHHHHHHH----HTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHTTTCTTHHHHH
T ss_pred CHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHH----------HHHHHcCCHHHHHHH
Confidence 344555555444 3555555555555555554 233344555555 444666666666666
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
+++++.+ +|....++.++|.++...|++++|+.++++++++. |....++.++|.++. ..|+++
T Consensus 226 ~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~-~~g~~~ 288 (388)
T 1w3b_A 226 YLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALK-EKGSVA 288 (388)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHH-HHSCHH
T ss_pred HHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHH-HcCCHH
Confidence 6666654 23445667788888888888888888888887642 334456788888887 889999
Q ss_pred HHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|+.++++++++.|+++. ++..+...+.+.+|+..+ ....|....++..+|.++...|++++|+.+++.+
T Consensus 289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999888888775542 344444445555555322 2345667778899999999999999999955444
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=2.9e-19 Score=140.81 Aligned_cols=165 Identities=14% Similarity=0.088 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|..+.++..+|.++ ...|++++|+..|+++++. +|....++.++| .++...|++++|+
T Consensus 2 p~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg----------~~~~~~g~~~~A~ 59 (217)
T 2pl2_A 2 QTAEQNPLRLGVQL----YALGRYDAALTLFERALKE--------NPQDPEALYWLA----------RTQLKLGLVNPAL 59 (217)
T ss_dssp --CCHHHHHHHHHH----HHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCCHHHHH
Confidence 34456889999877 5999999999999999876 566678899999 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-----------hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-----------QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 179 (303)
..+++++++ .|....++.++|.++..+ |++++|+..+++++++. |....++.+
T Consensus 60 ~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~ 123 (217)
T 2pl2_A 60 ENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------PRYAPLHLQ 123 (217)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHH
T ss_pred HHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------cccHHHHHH
Confidence 999999996 355667899999999999 99999999999999874 555678899
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 180 LASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 180 la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+|.++. .+|++++|+..|++++++.. ...++.++|.++...|++++|+..+
T Consensus 124 lg~~~~-~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 124 RGLVYA-LLGERDKAEASLKQALALED----------------------------TPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHH-HcCChHHHHHHHHHHHhccc----------------------------chHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999997 99999999999999986532 3456889999999999999999955
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+.+
T Consensus 175 ~~a 177 (217)
T 2pl2_A 175 AKA 177 (217)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 26
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=4.3e-19 Score=151.88 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=48.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.++...|++++|+..|++++.. .|....++.++|.++...|++++|+.+|++++++. |....++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~ 206 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--------PNFLDAY 206 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCcHHHH
Confidence 3445556666666666655553 23334455666666666666666666666665542 2223344
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++|.++. ..|++++|+..+++++.+.|
T Consensus 207 ~~lg~~~~-~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 207 INLGNVLK-EARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHH-TTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhhCc
Confidence 44454444 44555555555554444444
No 27
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.83 E-value=4.7e-18 Score=141.01 Aligned_cols=176 Identities=18% Similarity=0.036 Sum_probs=147.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|...|.+++++..+. .+.+..+.++.++|.++ ..+|++++|+.+|++++++.... .+....+.++.+
T Consensus 50 g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~----~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~ 121 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMML----KDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDR 121 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH----HHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 45678888889999888764 34567788999999777 68999999999999999998764 333456788999
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+| .+|.. |++++|+.+|++|+++.+.. .+......++.++|.+|..+|++++|+.+|++++.+....
T Consensus 122 lg----------~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 122 AG----------KLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HH----------HHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HH----------HHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 99 66678 99999999999999998763 3344567899999999999999999999999999998764
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
...+.....+.++|.++. .+|++++|+.+|++++ +.|
T Consensus 189 --~~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 189 --ENYPTCYKKCIAQVLVQL-HRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp --TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHT-TST
T ss_pred --CChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHh-CCC
Confidence 234556678899999997 9999999999999999 877
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.7e-18 Score=137.20 Aligned_cols=198 Identities=12% Similarity=0.062 Sum_probs=153.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|+.+|+++++.. ..+.++..+|.++ ...|++++|+.++++++++.... .++.+....++.
T Consensus 18 ~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~----~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 83 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH---------KDITYLNNRAAAE----YEKGEYETAISTLNDAVEQGREM-RADYKVISKSFA 83 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHH----HHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHH
Confidence 445677888888887762 2246889999877 59999999999999999987653 234444578899
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH-------------------HhhCCCcHHHHHHHHHHHHHHHHh
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSL-------------------KHFGENNVQTAKHYGNIGRLYQSM 145 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~~ 145 (303)
.+| .++...|++++|+.++++++.+.. +.. ...|....++..+|.++...
T Consensus 84 ~l~----------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIG----------NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA-YVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHT
T ss_pred HHH----------HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHh
Confidence 999 777999999999999999998421 110 13566677888888888888
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHH
Q psy4339 146 QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225 (303)
Q Consensus 146 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~ 225 (303)
|++++|+.+++++++.. |....++..+|.++. ..|++++|+.++++++...|
T Consensus 153 ~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~------------------- 204 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDP------------------- 204 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-------------------
T ss_pred cCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCH-------------------
Confidence 88888888888888753 333467788888886 88888888888888887766
Q ss_pred hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH-HHHH
Q psy4339 226 KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT-NKLS 263 (303)
Q Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~~ 263 (303)
....++..+|.++...|++++|..++ +.+.
T Consensus 205 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 205 --------NFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp --------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44567899999999999999999955 4443
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.82 E-value=6.8e-19 Score=149.91 Aligned_cols=208 Identities=10% Similarity=-0.033 Sum_probs=163.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc-HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR-FTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
-++.|+..|++++++ +|....++.++|.++ ...|+ +++|+.+|++++++ +|....++++
T Consensus 112 ~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l----~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~ 171 (382)
T 2h6f_A 112 RSERAFKLTRDAIEL--------NAANYTVWHFRRVLL----KSLQKDLHEEMNYITAIIEE--------QPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHh--------CccCHHHHHHHHHHH----HHcccCHHHHHHHHHHHHHH--------CCCCHHHHHH
Confidence 356677777777766 577778999999877 58996 99999999999998 5667789999
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+| .++...|++++|+..|++++++ +|....++.++|.++..+|++++|+.++++++++.
T Consensus 172 ~g----------~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--- 230 (382)
T 2h6f_A 172 RR----------VLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--- 230 (382)
T ss_dssp HH----------HHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---
T ss_pred HH----------HHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence 99 6668999999999999999996 45667889999999999999999999999999874
Q ss_pred cCCCchHHHHHHHHHHHHHHHh-hcCHHHH-----HHHHHHHHHhhhhhhh----hhhhhhhhh--hhHHHH---hhhcc
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYH-MLEYHKA-----EKLYFRSIEINDNLKL----FSASYSGLE--YHYRDL---KLFSA 230 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~----~~~~~~~l~--~~~~a~---~~~~~ 230 (303)
|....+++++|.++. . .|.+++| +.++++++.+.|+++. .+.++...+ .+.+++ ... .
T Consensus 231 -----P~~~~a~~~lg~~l~-~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~ 303 (382)
T 2h6f_A 231 -----VRNNSVWNQRYFVIS-NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q 303 (382)
T ss_dssp -----TTCHHHHHHHHHHHH-HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T
T ss_pred -----CCCHHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c
Confidence 566778999999997 8 5555788 5999999999886553 233333322 234443 223 5
Q ss_pred ccccHHHHHHhHHHHHHhhh--------c-HHHHHHHHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLE--------N-FEKMTEFTNKL 262 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~~ 262 (303)
..|....++..+|.+|..+| + +++|+++++.+
T Consensus 304 ~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 304 PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 56777888999999999985 3 58888866554
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=2.5e-18 Score=131.55 Aligned_cols=159 Identities=18% Similarity=0.094 Sum_probs=135.6
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHH
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSA 82 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (303)
...+-++.|+..|++++++ +|..+.++..+|.++ ...|++++|+..+.+++.. .|....+
T Consensus 16 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~----~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 75 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTY----MDIGLPNDAIESLKKFVVL--------DTTSAEA 75 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhc--------CchhHHH
Confidence 3456788899999999877 566678999999877 6999999999999999876 3445577
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+..+| ..+...++++.|...+.+++.. .|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 76 ~~~~~----------~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 76 YYILG----------SANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 77888 6668999999999999999986 34455678899999999999999999999999873
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
|....++.++|.+|. .+|++++|+.+|++++++.|++
T Consensus 138 --------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 138 --------PGFIRAYQSIGLAYE-GKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp --------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTHHH
T ss_pred --------chhhhHHHHHHHHHH-HCCCHHHHHHHHHHHHhCCccC
Confidence 555678999999997 9999999999999999998843
No 31
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.81 E-value=3.3e-18 Score=141.02 Aligned_cols=194 Identities=12% Similarity=-0.010 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|.....+...+..+ ...|+|++|+..+.++++.... ....+.....+..+| ..+...|++++|+
T Consensus 72 ~~~~~~l~~~~~~~----~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~~~~A~ 135 (293)
T 2qfc_A 72 IERKKQFKDQVIML----CKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVA----------AYVLKKVDYEYCI 135 (293)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHH----------HHHHTSSCHHHHH
T ss_pred hhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHH----------HHHhcCCCHHHHH
Confidence 44555666677666 5999999999999999886321 112223445566677 6668999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHhhc
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE-VGLSVGHLASLYNYHML 189 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~g 189 (303)
.++++++....+. .+......++.++|.+|..+|++++|+.++++++++.+.. ++.+. ...+++++|.+|. .+|
T Consensus 136 ~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~-~~~ 210 (293)
T 2qfc_A 136 LELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALY-LDS 210 (293)
T ss_dssp HHHHHHHTTCCCS--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHH-HHh
Confidence 9999999875432 2334457799999999999999999999999999988764 23333 3378999999997 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHH-HHHH-HHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM-TEFT-NKLSEWK 266 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~-~~~~~~~ 266 (303)
++++|+.++++++.+.+ . .......+.++.++|.+|...|++++| ..++ +++...+
T Consensus 211 ~y~~Al~~~~kal~~~~-------------------~--~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISC-------------------R--INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp CHHHHHHHHHHHHHHHH-------------------H--TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-------------------h--cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999887 2 233445678899999999999999999 6644 5554443
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.1e-18 Score=150.23 Aligned_cols=211 Identities=13% Similarity=0.032 Sum_probs=158.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc-chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE-NHLLLTSAHRVKALILEEIALDSNELISVQFY 106 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~ 106 (303)
.+++..+.+++.||.++ ..+|++++|+.+|++|+++.+...+. .+|..+.++.++| .+|..+|++
T Consensus 45 ~~~~~~a~~yn~Lg~~~----~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla----------~~y~~~g~~ 110 (472)
T 4g1t_A 45 QNREFKATMCNLLAYLK----HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYA----------WVYYHMGRL 110 (472)
T ss_dssp CC---CCHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHH----------HHHHHTTCH
T ss_pred CCChhHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHH----------HHHHHcCCh
Confidence 34555678899999888 58999999999999999998776443 3567888999999 667999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
++|+.++++++++.+...++.++..+.++.++|.++... ++|++|+.+|++++++. +++|. ++..+|.++
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~~~---~~~~~~~~~ 182 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKNPE---FTSGLAIAS 182 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHH
Confidence 999999999999998877666777788899999887765 57999999999999874 44444 455555554
Q ss_pred ---HHhhcCHHHHHHHHHHHHHhhhhhhhh----hhhhhhh----hhhHHHH---hhhccccccHHHHHHhHHHHHHhhh
Q psy4339 185 ---NYHMLEYHKAEKLYFRSIEINDNLKLF----SASYSGL----EYHYRDL---KLFSASYSGLEYDYRGLIHVYECLE 250 (303)
Q Consensus 185 ---~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~l----~~~~~a~---~~~~~~~~~~~~~~~~la~~~~~~g 250 (303)
. ..++.++|+..+++++++.|+++.. +..+..+ +...+|. +.....+|....++.++|.+|...|
T Consensus 183 ~~l~-~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 183 YRLD-NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHH-HSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred HHhc-CchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC
Confidence 3 5677889999999999998865532 2222221 2222333 2222345677788999999999999
Q ss_pred cHHHHHHHHHH
Q psy4339 251 NFEKMTEFTNK 261 (303)
Q Consensus 251 ~~~~A~~~~~~ 261 (303)
++++|+.+++.
T Consensus 262 ~~~~A~~~~~~ 272 (472)
T 4g1t_A 262 EPDKAIELLKK 272 (472)
T ss_dssp CHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99999995443
No 33
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.80 E-value=6.9e-18 Score=139.05 Aligned_cols=196 Identities=13% Similarity=0.015 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh---hHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL---LTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
+.....+...+..+ ...|+|++|+..++++++.. +..+. ....+..+| ..+...|+++
T Consensus 72 ~~~~~~l~~~i~~~----~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~----------~~~~~~~~~~ 132 (293)
T 3u3w_A 72 IERKKQFKDQVIML----CKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVA----------AYVLKKVDYE 132 (293)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHH----------HHHTTSSCHH
T ss_pred chhHHHHHHHHHHH----HHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHH----------HHHHcccCHH
Confidence 34444555555455 58999999999999988742 22232 244555677 6668889999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+.++++++.+.... .+....+.++.++|.+|..+|++++|+.+++++++..+.. +.+.+..+.+++++|.+|. .
T Consensus 133 ~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~-~ 208 (293)
T 3u3w_A 133 YCILELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALY-L 208 (293)
T ss_dssp HHHHHHHHHHHTCCCC--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHH-H
Confidence 9999999999964321 2334456789999999999999999999999999988764 3466788889999999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc-HHHHHH-HHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN-FEKMTE-FTNKLSEW 265 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~-~~~~~~~~ 265 (303)
+|++++|+.++++++++.+ + ....+..+.++.++|.+|..+|+ +++|.+ +.+++..+
T Consensus 209 ~~~y~~A~~~~~~al~~~~-------------------~--~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISC-------------------R--INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHH-------------------H--TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHH-------------------H--cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999988 2 23344678899999999999995 699999 55666666
Q ss_pred HHHHh
Q psy4339 266 KILRE 270 (303)
Q Consensus 266 ~~~~~ 270 (303)
+..++
T Consensus 268 ~~~~~ 272 (293)
T 3u3w_A 268 DILEM 272 (293)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 55544
No 34
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=6.2e-18 Score=136.86 Aligned_cols=192 Identities=16% Similarity=0.044 Sum_probs=151.4
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
-++.|+..|+++++. .+++|....++..+|.++ ...|++++|+..|+++++.. ++++....++..+
T Consensus 30 ~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~----~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l 95 (261)
T 3qky_A 30 KYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAY----YQNKEYLLAASEYERFIQIY-----QIDPRVPQAEYER 95 (261)
T ss_dssp CHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHH----HHhCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHH
Confidence 344444444444433 345556689999999888 59999999999999999883 4456677889999
Q ss_pred HHHHHHHhhhhHHHHh--------hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH--------------HHHHHHHHH
Q psy4339 87 ALILEEIALDSNELIS--------VQFYKEAELLHQNALVLSLKHFGENNVQTAKHY--------------GNIGRLYQS 144 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~~~~~ 144 (303)
| .++.. .|++++|+..|+++++.. ++++....+. ..+|.+|..
T Consensus 96 g----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 96 A----------MCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp H----------HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------HHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 66678 999999999999999964 3344444444 899999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh----------cCHHHHHHHHHHHHHhhhhhhhhhhh
Q psy4339 145 MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM----------LEYHKAEKLYFRSIEINDNLKLFSAS 214 (303)
Q Consensus 145 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~ 214 (303)
+|++++|+..|+++++.. ++++....++..+|.+|. .+ |++++|+..|+++++..|
T Consensus 161 ~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYI-AYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp TTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred ccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH-HhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 999999999999999864 555667889999999996 88 999999999999999888
Q ss_pred hhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 215 YSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 215 ~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
+++....+...++.++...|+++++..
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 445566677788888888887766543
No 35
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=4.1e-18 Score=144.39 Aligned_cols=214 Identities=14% Similarity=0.033 Sum_probs=154.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|+.+|+++++. +|..+.++..+|.++ ...|++++|+.++++++++ .|....++..
T Consensus 78 g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~ 137 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQ----AENEQELLAISALRRCLEL--------KPDNQTALMA 137 (368)
T ss_dssp TCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHCcCHHHHHHHHHHHHhc--------CCCCHHHHHH
Confidence 3455666666666544 455667899999877 5999999999999999987 3455678888
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH-------------HHHHHHHHHHHHHhhcHHHHH
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT-------------AKHYGNIGRLYQSMQKFDEAE 152 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~~~~~~A~ 152 (303)
+| .++...|++++|+..+++++.... +.+.. ......+|.++ ..|++++|+
T Consensus 138 l~----------~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~ 201 (368)
T 1fch_A 138 LA----------VSFTNESLQRQACEILRDWLRYTP-----AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVK 201 (368)
T ss_dssp HH----------HHHHHTTCHHHHHHHHHHHHHTST-----TTGGGCC---------------CTTHHHH-HHHHHHHHH
T ss_pred HH----------HHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHH
Confidence 99 666899999999999999988532 21111 11122566666 889999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh
Q psy4339 153 RMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF 228 (303)
Q Consensus 153 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~ 228 (303)
.++++++++. ++.+ ...++..+|.++. ..|++++|+.++++++.+.|+++. ++.++...+.+.+|+..+
T Consensus 202 ~~~~~a~~~~-----p~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 202 ELFLAAVRLD-----PTSI-DPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHS-----TTSC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhC-----cCcc-cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999888763 2211 4567888999997 899999999999999888775442 444444555555554322
Q ss_pred c---cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 S---ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 ~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
. ...|....++..+|.++...|++++|..+++.+
T Consensus 275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 234566778999999999999999999955444
No 36
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.80 E-value=2.4e-17 Score=127.79 Aligned_cols=158 Identities=13% Similarity=0.080 Sum_probs=136.6
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.+..+.++..+|.++ ...|++++|+.++++++++.+.. .+.+..+.++.++| .++...|++++
T Consensus 21 ~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~----------~~~~~~g~~~~ 84 (203)
T 3gw4_A 21 HPATASGARFMLGYVY----AFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVG----------MVERMAGNWDA 84 (203)
T ss_dssp STTTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHH----------HHHHHTTCHHH
T ss_pred ChHHHHHHHHHHHHHH----HHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHH----------HHHHHcCCHHH
Confidence 3446788999999877 59999999999999999998875 45667888999999 67799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+.++++++++.+.. +.++.....++.++|.++..+|++++|+.++++++.+.+.. .+......++.++|.++. ..
T Consensus 85 A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~-~~ 160 (203)
T 3gw4_A 85 ARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQ-QE 160 (203)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHH-HC
Confidence 999999999998853 22334778899999999999999999999999999987664 444556778899999997 99
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
|++++|..++++++.+.+
T Consensus 161 g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999999988
No 37
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=5.8e-18 Score=137.05 Aligned_cols=179 Identities=13% Similarity=0.070 Sum_probs=149.2
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.|..+..+..+|..+ ...|+|++|+..|+++++. .++++....++..+| .+|...|++++|
T Consensus 11 ~~~~~~~~~~~a~~~----~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg----------~~~~~~~~~~~A 71 (261)
T 3qky_A 11 RHSSPQEAFERAMEF----YNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLA----------RAYYQNKEYLLA 71 (261)
T ss_dssp CCSSHHHHHHHHHHH----HHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHH----------HHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHH----------HHHHHhCcHHHH
Confidence 345567899999887 5999999999999999876 244555578999999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH--------hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH----
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS--------MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV---- 177 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---- 177 (303)
+..|+++++.. ++++....++..+|.++.. +|++++|+..|+++++.. ++++....+.
T Consensus 72 ~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 72 ASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIR 141 (261)
T ss_dssp HHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHH
Confidence 99999999973 4566777899999999999 999999999999999875 4445555554
Q ss_pred ----------HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHH
Q psy4339 178 ----------GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 178 ----------~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 247 (303)
..+|.+|. ..|++++|+..|+++++..| .++....++..+|.+|.
T Consensus 142 ~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p------------------------~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYE-RRELYEAAAVTYEAVFDAYP------------------------DTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT------------------------TSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCC------------------------CCchHHHHHHHHHHHHH
Confidence 89999997 99999999999999998877 33456778999999999
Q ss_pred hh----------hcHHHHHHHHHHH
Q psy4339 248 CL----------ENFEKMTEFTNKL 262 (303)
Q Consensus 248 ~~----------g~~~~A~~~~~~~ 262 (303)
.. |++++|+..++.+
T Consensus 197 ~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 197 AYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HhcccchhhcccchHHHHHHHHHHH
Confidence 77 8889999955444
No 38
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=2.9e-18 Score=150.76 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
+.|+..|++++++ +|..+.++..+|.++ ...|++++|+.+|++++++ .|. ..++.++|
T Consensus 120 ~~A~~~~~~al~~--------~p~~~~a~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg- 177 (474)
T 4abn_A 120 PEAEVLLSKAVKL--------EPELVEAWNQLGEVY----WKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLS- 177 (474)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHH-
T ss_pred HHHHHHHHHHHhh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHH-
Confidence 6778888888776 455677999999877 5899999999999999876 233 47888899
Q ss_pred HHHHHhhhhHHHHhh---------hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--------hcHHHH
Q psy4339 89 ILEEIALDSNELISV---------QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--------QKFDEA 151 (303)
Q Consensus 89 ~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A 151 (303)
.++... |++++|+..|++++++ .|....++.++|.+|..+ |++++|
T Consensus 178 ---------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 178 ---------MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp ---------HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ---------HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 666888 9999999999999996 345567899999999999 999999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS 231 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 231 (303)
+.+|++++++. +..+....++.++|.+|. .+|++++|+.+|++++++.|
T Consensus 241 ~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p------------------------- 289 (474)
T 4abn_A 241 LSAYAQAEKVD-----RKASSNPDLHLNRATLHK-YEESYGEALEGFSQAAALDP------------------------- 289 (474)
T ss_dssp HHHHHHHHHHC-----GGGGGCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-------------------------
T ss_pred HHHHHHHHHhC-----CCcccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC-------------------------
Confidence 99999999874 111267788999999997 99999999999999999887
Q ss_pred cccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 232 YSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
....++..++.++...|++++|++.+
T Consensus 290 --~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 290 --AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567899999999999999999844
No 39
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.79 E-value=2.2e-18 Score=148.29 Aligned_cols=123 Identities=18% Similarity=0.173 Sum_probs=117.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|+|++|+..+++++++.++.+|++||.++.+++++| .+|..+|+|++|+.++++++++.++.+|++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa----------~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAM----------GVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHH----------HHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 357899999999999999999999999999999999999 7779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
|.++..+++||.+|..+|++++|+.++++|+++.+..+|++||.+..+..+|.
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988877764
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=2.5e-18 Score=146.38 Aligned_cols=194 Identities=8% Similarity=-0.059 Sum_probs=157.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh-HH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF-YK 107 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~-~~ 107 (303)
-+|....++..+|.++ ...|++++|+..|++++++ +|....+++++| .++...|+ ++
T Consensus 92 ~~p~~~~a~~~lg~~~----~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g----------~~l~~~g~d~~ 149 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVL----QRDERSERAFKLTRDAIEL--------NAANYTVWHFRR----------VLLKSLQKDLH 149 (382)
T ss_dssp CCHHHHHHHHHHHHHH----HHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCCHH
T ss_pred CChhhHHHHHHHHHHH----HHCCChHHHHHHHHHHHHh--------CccCHHHHHHHH----------HHHHHcccCHH
Confidence 3578899999999777 6999999999999999988 677788999999 66689997 99
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+..|++++.+ +|....++.++|.++..+|++++|+.+|++++++. |....++.++|.++. .
T Consensus 150 eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------P~~~~a~~~lg~~~~-~ 212 (382)
T 2h6f_A 150 EEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQ-E 212 (382)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHH-H
Confidence 999999999996 45667789999999999999999999999999874 566788999999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhh-hhhHHH--------HhhhccccccHHHHHHhHHHHHHhhh--cH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLKL----FSASYSGL-EYHYRD--------LKLFSASYSGLEYDYRGLIHVYECLE--NF 252 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l-~~~~~a--------~~~~~~~~~~~~~~~~~la~~~~~~g--~~ 252 (303)
+|++++|+.++++++.+.++++. .+.++..+ +...+| +...-...|....++.++|.++...| ++
T Consensus 213 ~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence 99999999999999999886542 34444442 221222 11122235667778999999999988 68
Q ss_pred HHHHHHHHH
Q psy4339 253 EKMTEFTNK 261 (303)
Q Consensus 253 ~~A~~~~~~ 261 (303)
++|+++.+.
T Consensus 293 ~~a~~~~~~ 301 (382)
T 2h6f_A 293 PNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888875433
No 41
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.79 E-value=2.4e-18 Score=148.13 Aligned_cols=123 Identities=15% Similarity=-0.003 Sum_probs=117.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 180 (303)
...|+|++|+..+++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||.++..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHH
Q psy4339 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLI 243 (303)
Q Consensus 181 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la 243 (303)
|.+|. .+|++++|+.++++|+++.. ..+|++||.+..+..+|.
T Consensus 389 a~~~~-~qg~~~eA~~~~~~Al~i~~-------------------~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYM-GLENKAAGEKALKKAIAIME-------------------VAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HHTCTTCHHHHHHHHHHH
T ss_pred HHHHH-hccCHHHHHHHHHHHHHHHH-------------------HHcCCCChHHHHHHHHHh
Confidence 99997 99999999999999999999 899999999888777664
No 42
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=3.4e-18 Score=142.43 Aligned_cols=172 Identities=12% Similarity=0.026 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
...++..+|.++ ...|++++|+..++++++. .|....++..+| .++...|++++|+.+
T Consensus 124 ~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~----------~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 124 YGPAWIAYGHSF----AVESEHDQAMAAYFTAAQL--------MKGCHLPMLYIG----------LEYGLTNNSKLAERF 181 (330)
T ss_dssp CTHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------TTTCSHHHHHHH----------HHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh--------ccccHHHHHHHH----------HHHHHHhhHHHHHHH
Confidence 344556666555 3666666666666666655 222234444456 555777777777777
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHhhcCH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD-YEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~g~~ 191 (303)
+++++.. .|....++..+|.++...|++++|+.++++++++......... |....++.++|.++. ..|++
T Consensus 182 ~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~ 252 (330)
T 3hym_B 182 FSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 252 (330)
T ss_dssp HHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-HhcCH
Confidence 7777764 3444677899999999999999999999999998755422221 444578899999997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++|+.++++++++.+ ....++..+|.++...|++++|.++++.+
T Consensus 253 ~~A~~~~~~a~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 253 AEALDYHRQALVLIP---------------------------QNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHHHHST---------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCc---------------------------cchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999998877 33456889999999999999999965443
No 43
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=7.3e-18 Score=148.16 Aligned_cols=187 Identities=14% Similarity=0.036 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccH-HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 10 NLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRF-TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
....-++++++.+..... ..|..+.++..+|.++ ...|++ ++|+.+|++++++ +|....++..+|
T Consensus 79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~----~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg- 144 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKAL----NVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLG- 144 (474)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHH----TSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHH----HhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHH-
Confidence 455556777777766543 4456788999999877 599999 9999999999987 456678899999
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHH
Q psy4339 89 ILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM---------QKFDEAERMQLKAI 159 (303)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al 159 (303)
.+|...|++++|+.+|++++++ .|. ..++.++|.++..+ |++++|+.++++++
T Consensus 145 ---------~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 145 ---------EVYWKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp ---------HHHHHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 7779999999999999999985 233 47899999999999 99999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhh--------cCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHM--------LEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS 231 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 231 (303)
++. |....++.++|.+|. .+ |++++|+.+|++++.+.| .
T Consensus 207 ~~~--------p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p-------------------~----- 253 (474)
T 4abn_A 207 QMD--------VLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDR-------------------K----- 253 (474)
T ss_dssp HHC--------TTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCG-------------------G-----
T ss_pred HhC--------CCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCC-------------------C-----
Confidence 874 555678999999997 99 999999999999998876 1
Q ss_pred cccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 232 YSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
.+....++.++|.+|...|++++|+++++.
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 335567799999999999999999995543
No 44
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.79 E-value=1.1e-17 Score=132.48 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..+..+|.++ ...|+|++|+.+|++++++.. +....++.++| .++...|++++|+.+++
T Consensus 8 ~~~~~~g~~~----~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~ 66 (228)
T 4i17_A 8 NQLKNEGNDA----LNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCG----------VCADNIKKYKEAADYFD 66 (228)
T ss_dssp HHHHHHHHHH----HHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHH----------HHHHHhhcHHHHHHHHH
Confidence 7899999877 599999999999999998821 02335667789 77799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHhhcC
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY----EVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~~g~ 190 (303)
+++.. .|....++.++|.+|..+|++++|+.++++++++. ++++ ..+.++.++|.++. ..|+
T Consensus 67 ~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~-~~~~ 132 (228)
T 4i17_A 67 IAIKK--------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQ-QAGN 132 (228)
T ss_dssp HHHHT--------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHh--------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHH-Hhcc
Confidence 99974 45567789999999999999999999999999875 3333 23467999999997 9999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4339 191 YHKAEKLYFRSIEIND 206 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~ 206 (303)
+++|+.+|++++++.|
T Consensus 133 ~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 133 IEKAEENYKHATDVTS 148 (228)
T ss_dssp HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998877
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=6.8e-18 Score=148.01 Aligned_cols=235 Identities=13% Similarity=0.068 Sum_probs=160.3
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGS-ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS 81 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (303)
...+..+.|++.|++|+++.+...+. .+|..+.++.++|.+| ..+|++++|+.++++++++.+...++.++..+.
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y----~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY----YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH----HHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 34567899999999999998876543 4677889999999888 599999999999999999999887777777888
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH---HhhcHHHHHHHHHHH
Q psy4339 82 AHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQ---SMQKFDEAERMQLKA 158 (303)
Q Consensus 82 ~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~a 158 (303)
++.++|+.+ .....++|++|+.+|++++++. |+++ .++.++|.++. ..+++++|++.++++
T Consensus 138 ~~~~~g~~~--------~~~~~~~y~~A~~~~~kal~~~-----p~~~---~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 138 LDCEEGWTR--------LKCGGNQNERAKVCFEKALEKK-----PKNP---EFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHHHHHHHH--------HHHCTTHHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred HHHHHHHHH--------HHHccccHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 888888543 2234568999999999999862 2222 22333333322 223334455555544
Q ss_pred HHHHHH-------------hcC-----------------CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 159 IAIKEK-------------VLG-----------------KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 159 l~~~~~-------------~~~-----------------~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
+++... ..+ ...|....++.++|.+|. ..|++++|+..+++++++.|+.
T Consensus 202 l~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~ 280 (472)
T 4g1t_A 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR-RKDEPDKAIELLKKALEYIPNN 280 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTC
T ss_pred hhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCh
Confidence 433100 000 002344567889999997 9999999999999999988754
Q ss_pred hhhhhhhhhhhhhH--------------------------HHHh---hhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHY--------------------------RDLK---LFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 209 ~~~~~~~~~l~~~~--------------------------~a~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+. +++.++..+ +|+. .....+|....++..+|.++...|++++|++++
T Consensus 281 ~~---~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 281 AY---LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 32 222222211 2221 112224455556788999999999999999955
Q ss_pred HH
Q psy4339 260 NK 261 (303)
Q Consensus 260 ~~ 261 (303)
+.
T Consensus 358 ~k 359 (472)
T 4g1t_A 358 QK 359 (472)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 46
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.79 E-value=6.6e-17 Score=120.22 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=137.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.+..+.++..+|.++ ...|++++|+.++++++++.+.. .+....+.++.++| .++...|++++
T Consensus 4 d~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~----------~~~~~~g~~~~ 67 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTH----YLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLG----------NAYIFLGEFET 67 (164)
T ss_dssp CHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH----------HHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHH----------HHHHHcCCHHH
Confidence 4566788999999877 58999999999999999998774 34455677888899 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+.++++++++.+.. ++++....++.++|.++...|++++|+.++++++++.+.. .+++....++..+|.++. ..
T Consensus 68 A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~-~~ 142 (164)
T 3ro3_A 68 ASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYT-AL 142 (164)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHH-Hc
Confidence 999999999998765 4556678889999999999999999999999999998765 456777889999999997 99
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4339 189 LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~ 206 (303)
|++++|+.++++++++.+
T Consensus 143 g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999999876
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=1.6e-17 Score=133.31 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=146.4
Q ss_pred cHHH-HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 30 NLQV-AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 30 ~~~~-~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+|.. +.++..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++
T Consensus 32 ~~~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la----------~~~~~~~~~~~ 89 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGY----LQRGNTEQAKVPLRKALEI--------DPSSADAHAALA----------VVFQTEMEPKL 89 (252)
T ss_dssp CHHHHHHHHHHHHHHH----HHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHH----HHcCChHHHHHHHHHHHhc--------CCChHHHHHHHH----------HHHHHcCCHHH
Confidence 4544 78888888766 5888999999999888876 344457777888 66688889999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
|+.+++++++. .|....++..+|.++...|++++|+.++++++. .+..|....++..+|.++. ..
T Consensus 90 A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~-~~ 154 (252)
T 2ho1_A 90 ADEEYRKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSL-QM 154 (252)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHH--------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHH-Hc
Confidence 99999888875 233456778888899999999999999988876 1344666778888888886 88
Q ss_pred cCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhh---hccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 189 LEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKL---FSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
|++++|+.++++++...++++ .++..+...+...+|... .....|....++..++.++...|++++|..+++.
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999888777543 244444455555555422 2223455667789999999999999999996655
Q ss_pred H
Q psy4339 262 L 262 (303)
Q Consensus 262 ~ 262 (303)
+
T Consensus 235 ~ 235 (252)
T 2ho1_A 235 L 235 (252)
T ss_dssp H
T ss_pred H
Confidence 5
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=5.4e-18 Score=137.64 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=159.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHR 84 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~ 84 (303)
..++.|+..|+++++. +|....++..+|.++ ...|++++|+.+++++++. +.++. ...++.
T Consensus 17 ~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~~ 78 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCY----YELAKYDLAQKDIETYFSK------VNATKAKSADFE 78 (272)
T ss_dssp TCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHH----HHTTCHHHHHHHHHHHHTT------SCTTTCCHHHHH
T ss_pred cCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHH----HHHhhHHHHHHHHHHHHhc------cCchhHHHHHHH
Confidence 4456677777777654 334456889999877 5999999999999999873 23333 577889
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+| .++...|++++|+.+++++++. .|....++.++|.+|..+|++++|+.++++++++
T Consensus 79 ~lg----------~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--- 137 (272)
T 3u4t_A 79 YYG----------KILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--- 137 (272)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred HHH----------HHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence 999 7779999999999999999996 2334567899999999999999999999999865
Q ss_pred hcCCCchHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhh----------hhHHHHhhhc
Q psy4339 165 VLGKDDYEVGLSVGHLA-SLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLE----------YHYRDLKLFS 229 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la-~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~----------~~~~a~~~~~ 229 (303)
.|....++.++| .+| ..+++++|+.++++++++.|+++. .+.++..++ .+.++++...
T Consensus 138 -----~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 138 -----TTTDPKVFYELGQAYY--YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp -----SCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred -----CCCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 255567889999 665 477999999999999999886542 333333333 3334444332
Q ss_pred cc----cccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 230 AS----YSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 230 ~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.. .+....++..+|.+|...|++++|.++++.+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 1225578999999999999999999966444
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=4.9e-18 Score=135.38 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|....++..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++|+
T Consensus 54 ~~~~~~~~~la~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la----------~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 54 KEDAIPYINFANLL----SSVNELERALAFYDKALEL--------DSSAATAYYGAG----------NVYVVKEMYKEAK 111 (243)
T ss_dssp TTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHH----------HHHHHhccHHHHH
Confidence 44456777777666 4777777777777777765 233456666667 5557777777777
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
.+++++++.. |....++..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|+
T Consensus 112 ~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~-~~~~ 174 (243)
T 2q7f_A 112 DMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--------ENDTEARFQFGMCLA-NEGM 174 (243)
T ss_dssp HHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HHTC
T ss_pred HHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHH-HcCC
Confidence 7777777752 1223456677777777777777777777777653 223446677777775 7777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+++|+.++++++...+ ....++..+|.++...|++++|..+++.+
T Consensus 175 ~~~A~~~~~~~~~~~~---------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDP---------------------------GHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp CHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc---------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777776655 44567899999999999999999966544
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=2.4e-18 Score=157.39 Aligned_cols=158 Identities=18% Similarity=0.137 Sum_probs=141.0
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHH
Q psy4339 3 QKKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSA 82 (303)
Q Consensus 3 ~~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (303)
...+.++.|+.+|++|+++ +|+.+.++.+||.++ ..+|++++|+.+|++|+++ +|..+.+
T Consensus 20 ~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l----~~~g~~~eA~~~~~~Al~l--------~P~~~~a 79 (723)
T 4gyw_A 20 REQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVL----QQQGKLQEALMHYKEAIRI--------SPTFADA 79 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 3556788999999999987 566778999999887 6999999999999999998 5677889
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.++| .++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+.+|++|+++.
T Consensus 80 ~~nLg----------~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 80 YSNMG----------NTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp HHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999 7779999999999999999997 45667889999999999999999999999999874
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
|....++.++|.++. .+|++++|++.+++++++.++
T Consensus 142 --------P~~~~a~~~L~~~l~-~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 142 --------PDFPDAYCNLAHCLQ-IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp --------SCCHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHHHH
T ss_pred --------CCChHHHhhhhhHHH-hcccHHHHHHHHHHHHHhChh
Confidence 555678999999998 999999999999999999884
No 51
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.78 E-value=9.5e-18 Score=144.65 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=124.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
..+|+|++|+..+++++++.++.++++||..+.+++++| .+|..+|+|++|+.++++++++.++.+|++|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~----------~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAM----------DACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHH----------HHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 389999999999999999999999999999999999999 7779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
|.++..+++||.+|..+|++++|+.++++|+++.+..+|++||.+..++.+|+.+.. .++
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~-e~~ 427 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA-NIR 427 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH-HHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HHh
Confidence 999999999999999999999999999999999999999999999999999999886 543
No 52
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=1.9e-17 Score=140.39 Aligned_cols=218 Identities=13% Similarity=0.008 Sum_probs=149.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchh--hhHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL--LLTSA 82 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~ 82 (303)
...++.|+..|++++++ +|....++..+|.++ ...|++++|+.++++++++.......... .....
T Consensus 112 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 179 (365)
T 4eqf_A 112 NENEQAAIVALQRCLEL--------QPNNLKALMALAVSY----TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179 (365)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCHHHHCC----------
T ss_pred CCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH----HccccHHHHHHHHHHHHHhCccchHHHhhhccchHH
Confidence 34567788888888776 355567899999877 69999999999999999874321000000 01233
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+..+| .++...|++++|+.++++++... ++. ....++.++|.++..+|++++|+.++++++++.
T Consensus 180 ~~~l~----------~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 180 TRRMS----------KSPVDSSVLEGVKELYLEAAHQN-----GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHS-----CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHH----------HHHhhhhhHHHHHHHHHHHHHhC-----cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34456 67789999999999999999862 221 135578899999999999999999999998863
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHH-------hhhccc
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDL-------KLFSAS 231 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~-------~~~~~~ 231 (303)
|....++.++|.++. ..|++++|+.++++++.+.|+++ .++.++..++.+.+|. +.....
T Consensus 244 --------p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 244 --------PEDYSLWNRLGATLA-NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp --------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred --------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 444567899999997 99999999999999999887644 2445555555444443 222111
Q ss_pred ----c----ccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 232 ----Y----SGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 232 ----~----~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
+ .....++..++.++...|+.+.|....
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 315 RNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp ------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 0 013567899999999999999888743
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.5e-16 Score=127.78 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
+..+..+..+|.++ ...|++++|+.+|+++++.. ....++..+| .++...|++++|+
T Consensus 2 ~~~a~~~~~~g~~~----~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~----------~~~~~~~~~~~A~ 58 (258)
T 3uq3_A 2 GSMADKEKAEGNKF----YKARQFDEAIEHYNKAWELH---------KDITYLNNRA----------AAEYEKGEYETAI 58 (258)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHH----------HHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHhh---------ccHHHHHHHH----------HHHHHcccHHHHH
Confidence 45778999999888 59999999999999999872 2246788888 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-------------------HHhcCCCch
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK-------------------EKVLGKDDY 171 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------~~~~~~~~~ 171 (303)
.++++++++.... .++.+....++..+|.++...|++++|+.++++++.+. ++.. ...|
T Consensus 59 ~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~ 136 (258)
T 3uq3_A 59 STLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA-YVNP 136 (258)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCH
T ss_pred HHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH-HcCc
Confidence 9999999987653 23445557899999999999999999999999999842 1111 1347
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (303)
....++..+|.++. ..|++++|+.++++++...+ ....++..+|.++...|+
T Consensus 137 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~---------------------------~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 137 EKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAP---------------------------EDARGYSNRAAALAKLMS 188 (258)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCc---------------------------ccHHHHHHHHHHHHHhCC
Confidence 77788899999997 99999999999999998777 345678999999999999
Q ss_pred HHHHHHHHHHH
Q psy4339 252 FEKMTEFTNKL 262 (303)
Q Consensus 252 ~~~A~~~~~~~ 262 (303)
+++|+.+++.+
T Consensus 189 ~~~A~~~~~~a 199 (258)
T 3uq3_A 189 FPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999955444
No 54
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.2e-17 Score=139.89 Aligned_cols=215 Identities=15% Similarity=0.080 Sum_probs=147.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhH----
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLT---- 80 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---- 80 (303)
...++.|+..|++++++ .|....++..+|.++ ...|++++|+..+++++.... ..+...
T Consensus 111 ~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~ 173 (368)
T 1fch_A 111 NEQELLAISALRRCLEL--------KPDNQTALMALAVSF----TNESLQRQACEILRDWLRYTP-----AYAHLVTPAE 173 (368)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTST-----TTGGGCC---
T ss_pred CcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHHH
Confidence 34567777778877766 345567899999877 599999999999999987632 222111
Q ss_pred ---------HHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHH
Q psy4339 81 ---------SAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEA 151 (303)
Q Consensus 81 ---------~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 151 (303)
.....++ ..+ ..|++++|+.++++++... ++.+ ...++.++|.++...|++++|
T Consensus 174 ~~~~~~~~~~~~~~~~----------~~~-~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 174 EGAGGAGLGPSKRILG----------SLL-SDSLFLEVKELFLAAVRLD-----PTSI-DPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp ------------CTTH----------HHH-HHHHHHHHHHHHHHHHHHS-----TTSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhcccHHHHHHH----------HHh-hcccHHHHHHHHHHHHHhC-----cCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 0111233 333 7888888888888888752 1111 456777888888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHH--
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDL-- 225 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~-- 225 (303)
+.++++++.+. |....++.++|.++. ..|++++|+.++++++.+.|+++ .++.++..++.+.+|.
T Consensus 237 ~~~~~~al~~~--------~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 237 VDCFTAALSVR--------PNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp HHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhC--------cCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888763 334567788888886 88888888888888888777543 2444444444444443
Q ss_pred -----hhhccc-------cccHHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 226 -----KLFSAS-------YSGLEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 226 -----~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
...... ++....++..+|.++...|++++|.... +.+
T Consensus 308 ~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 221111 2233778999999999999999999944 444
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=6.7e-17 Score=127.04 Aligned_cols=197 Identities=15% Similarity=0.047 Sum_probs=147.2
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
.+|..+.++..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++
T Consensus 3 ~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~----------~~~~~~~~~~~ 60 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEY----MRGQDYRQATASIEDALKS--------DPKNELAWLVRA----------EIYQYLKVNDK 60 (225)
T ss_dssp -CCHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred CCcccHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHh--------CccchHHHHHHH----------HHHHHcCChHH
Confidence 4577888999999777 5899999999999999886 344456778888 66689999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
|+.++++++.. .|....++..+|.++... |++++|+.+++++++ . +..|....++..+|.++. .
T Consensus 61 A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~~~~~~l~~~~~-~ 125 (225)
T 2vq2_A 61 AQESFRQALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-----PTYPTPYIANLNKGICSA-K 125 (225)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-----TTCSCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-----cCCcchHHHHHHHHHHHH-H
Confidence 99999999886 233456788999999999 999999999999886 1 345666778899999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhh---ccccc-cHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 188 MLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLF---SASYS-GLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~---~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
.|++++|+.++++++...++++ .++.++...+...+|...+ ....| .....+..++.++...|+.++|..+.
T Consensus 126 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999999998877543 2333444444444443221 11233 44445667777777888888777766
Q ss_pred HHH
Q psy4339 260 NKL 262 (303)
Q Consensus 260 ~~~ 262 (303)
+.+
T Consensus 206 ~~~ 208 (225)
T 2vq2_A 206 AQL 208 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 56
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.77 E-value=6e-18 Score=145.91 Aligned_cols=133 Identities=13% Similarity=-0.001 Sum_probs=125.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+..+|+|++|+..+++++++.++.+|++||.++.++.++|.+|..+|+|++|+.++++++++.++.+|++||.++..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLE 250 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 250 (303)
++||.+|. .+|++++|+.++++|+++.. ..+|++||.+..++.+|+.+....+
T Consensus 375 ~nLa~~~~-~~g~~~eA~~~~~~Al~i~~-------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQL-HQGMFPQAMKNLRLAFDIMR-------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHH-------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 99999998 99999999999999999999 9999999999999999998876543
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=1e-16 Score=130.10 Aligned_cols=213 Identities=13% Similarity=-0.038 Sum_probs=153.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|+..|+++++. ...++|..+.++..+|.++ ...|++++|+.+|+++++. +|....++..
T Consensus 19 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~ 82 (275)
T 1xnf_A 19 LQQEVILARMEQILAS----RALTDDERAQLLYERGVLY----DSLGLRALARNDFSQALAI--------RPDMPEVFNY 82 (275)
T ss_dssp HHHHHHHHHHHHHHTS----SCCCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CCCCHHHHHH
T ss_pred chHHHHHHHHHHHHhc----ccccCchhHHHHHHHHHHH----HHcccHHHHHHHHHHHHHc--------CCCcHHHHHH
Confidence 3455566666655543 1134678899999999877 5999999999999999987 3445678888
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
+| .++...|++++|+.++++++.. .|....++.++|.++...|++++|+.++++++++.
T Consensus 83 la----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 141 (275)
T 1xnf_A 83 LG----------IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--- 141 (275)
T ss_dssp HH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HH----------HHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---
Confidence 99 6779999999999999999996 23345678999999999999999999999999864
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh---hhhhhhhhhhhHHHH-------hhhccccccH
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL---FSASYSGLEYHYRDL-------KLFSASYSGL 235 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~l~~~~~a~-------~~~~~~~~~~ 235 (303)
++++ .....++. .. ..|++++|+..+++++...++.+. .+..+.......+|+ .......|..
T Consensus 142 --~~~~---~~~~~~~~-~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 142 --PNDP---FRSLWLYL-AE-QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp --TTCH---HHHHHHHH-HH-HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred --CCCh---HHHHHHHH-HH-HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 3333 22233333 34 689999999999999988774332 111111112222333 2111222334
Q ss_pred HHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 236 EYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..++..+|.++...|++++|..+++.+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999999999999966544
No 58
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.5e-17 Score=137.15 Aligned_cols=211 Identities=11% Similarity=0.005 Sum_probs=145.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|..+|+++++. +|....++..++.++ ...|++++|+.+++++++. +|....++.
T Consensus 35 ~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~ 94 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTL----VELNKANELFYLSHKLVDL--------YPSNPVSWF 94 (330)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTSTHHHH
T ss_pred cCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHH----HHhhhHHHHHHHHHHHHHh--------CcCCHHHHH
Confidence 35677888888888765 233345566666566 4788888888888888775 344456677
Q ss_pred HHHHHHHHHhhhhHHHHhhh-hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQ-FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.+| .++...| ++++|+.++++++.. .|....++..+|.++...|++++|+.++++++++.
T Consensus 95 ~l~----------~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 155 (330)
T 3hym_B 95 AVG----------CYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM- 155 (330)
T ss_dssp HHH----------HHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred HHH----------HHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence 777 5557888 888888888888774 23344567788888888888888888888887764
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHH-------hhhcc--
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDL-------KLFSA-- 230 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~-------~~~~~-- 230 (303)
|....++..+|.++. ..|++++|+.++++++...|+++. ++..+...+.+.+|. .....
T Consensus 156 -------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 156 -------KGCHLPMLYIGLEYG-LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp -------TTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred -------cccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 222345666888886 888888888888888887775542 333444444444443 21110
Q ss_pred ---ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 231 ---SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 231 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..|....++..+|.++...|++++|+.+++.+
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 01344567999999999999999999965444
No 59
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.77 E-value=1.8e-16 Score=122.85 Aligned_cols=177 Identities=13% Similarity=0.165 Sum_probs=140.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|...++... .+.+..+.++..+| .++...|++++|+.++++++.+.++. .+.
T Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 62 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--------AHPATASGARFMLG----------YVYAFMDRFDEARASFQALQQQAQKS--GDH 62 (203)
T ss_dssp ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHTT--CCH
T ss_pred cccccHHHHHHHHHHhc--------CChHHHHHHHHHHH----------HHHHHhCcHHHHHHHHHHHHHHHHHc--CCc
Confidence 36899999999554331 12335678889999 66799999999999999999998865 456
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
+....++.++|.++..+|++++|+.++++++++.+.. +.+++....++.++|.++. ..|++++|+.++++++.+.+
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~-- 138 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVAL-HFGDLAGARQEYEKSLVYAQ-- 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH--
Confidence 7788999999999999999999999999999998753 3344477889999999997 99999999999999999877
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEWKIL 268 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~ 268 (303)
. .........++..+|.++...|++++|.. +.+++......
T Consensus 139 -----------------~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 139 -----------------Q--ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp -----------------H--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----------------h--ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 2 11222456678999999999999999999 55666555443
No 60
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=5.4e-17 Score=144.38 Aligned_cols=207 Identities=16% Similarity=0.088 Sum_probs=162.2
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|...|++++++ .|. ..++..+|.++ ...|++++|+.+++++++. .|....++..+|
T Consensus 259 ~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~ 317 (537)
T 3fp2_A 259 LLDAQVLLQESINL--------HPT-PNSYIFLALTL----ADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHH--------CCC-HHHHHHHHHHT----CCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--------CCC-chHHHHHHHHH----HHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHH
Confidence 45566666666554 233 67889999776 6999999999999999987 344567788899
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++...|++++|+..+++++... |....++..+|.++...|++++|+.+++++++..
T Consensus 318 ----------~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----- 374 (537)
T 3fp2_A 318 ----------QMYFILQDYKNAKEDFQKAQSLN--------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF----- 374 (537)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHHHHC--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred ----------HHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 67799999999999999999962 3334678899999999999999999999999863
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh----------hhhhhhh----------hhhHHHHhh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF----------SASYSGL----------EYHYRDLKL 227 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~l----------~~~~~a~~~ 227 (303)
|....++..+|.++. ..|++++|+.++++++...++.+.. +..+... +.+.+|+..
T Consensus 375 ---~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 375 ---PTLPEVPTFFAEILT-DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp ---TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 334457889999997 9999999999999999998865421 2344444 666666532
Q ss_pred h---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 228 F---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 228 ~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+ ....|....++..+|.++...|++++|.++++.+
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2 2335666788999999999999999999955443
No 61
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.76 E-value=6.1e-17 Score=133.37 Aligned_cols=171 Identities=12% Similarity=-0.038 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhC--CCcHHH---HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHH
Q psy4339 16 QLALKLKQVLFG--SENLQV---AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALIL 90 (303)
Q Consensus 16 ~~al~~~~~~~~--~~~~~~---~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 90 (303)
++|++.+++... +..|.. ...+..+|.++ ...|++++|+.++++++++... ..+....+.+++++|
T Consensus 92 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~Ai~~~~~al~~~~~--~~~~~~~~~~~~~lg--- 162 (293)
T 3u3w_A 92 KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYV----LKKVDYEYCILELKKLLNQQLT--GIDVYQNLYIENAIA--- 162 (293)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH----TTSSCHHHHHHHHHHHHHTCCC--CSCTTHHHHHHHHHH---
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHH----HcccCHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHH---
Confidence 344454444332 233432 44566788655 5889999999999999985322 122333567889999
Q ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCc
Q psy4339 91 EEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD 170 (303)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 170 (303)
.+|...|++++|+.+|+++++..++. +.+.+..+.++.++|.+|..+|++++|+.++++++++.... .+.
T Consensus 163 -------~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~ 232 (293)
T 3u3w_A 163 -------NIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSM 232 (293)
T ss_dssp -------HHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBC
T ss_pred -------HHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcH
Confidence 77799999999999999999988764 24667788899999999999999999999999999998775 455
Q ss_pred hHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhhh
Q psy4339 171 YEVGLSVGHLASLYNYHML-EYHKAEKLYFRSIEIND 206 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g-~~~~A~~~~~~al~~~~ 206 (303)
+..+.++.++|.+|. .+| .+++|+.++++|+.+..
T Consensus 233 ~~~~~~~~~lg~~~~-~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 233 ALIGQLYYQRGECLR-KLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHH
Confidence 667899999999997 999 47999999999999988
No 62
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.76 E-value=1.5e-16 Score=125.81 Aligned_cols=175 Identities=7% Similarity=-0.134 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
+..+..+|..+ ...|+|++|+..|+++++. .+.++....++..+| .+|...|++++|+..|
T Consensus 4 ~~~~~~~a~~~----~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg----------~~~~~~~~~~~A~~~~ 64 (225)
T 2yhc_A 4 PNEIYATAQQK----LQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLI----------YAYYKNADLPLAQAAI 64 (225)
T ss_dssp HHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHH----------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHH----------HHHHhcCCHHHHHHHH
Confidence 45788899777 5999999999999999886 234455567889999 7779999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH------------------hhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQS------------------MQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 114 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
+++++.. |+++....++..+|.++.. +|++++|+..|+++++.. ++++....
T Consensus 65 ~~~l~~~-----P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~ 134 (225)
T 2yhc_A 65 DRFIRLN-----PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTD 134 (225)
T ss_dssp HHHHHHC-----TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHH
T ss_pred HHHHHHC-----cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHH
Confidence 9999863 4556666788899998876 579999999999998764 34443322
Q ss_pred --------------HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHh
Q psy4339 176 --------------SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRG 241 (303)
Q Consensus 176 --------------~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~ 241 (303)
....+|.+|. ..|++++|+..|+++++..| +++....++..
T Consensus 135 a~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p------------------------~~~~~~~a~~~ 189 (225)
T 2yhc_A 135 ATKRLVFLKDRLAKYEYSVAEYYT-ERGAWVAVVNRVEGMLRDYP------------------------DTQATRDALPL 189 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHST------------------------TSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHCc------------------------CCCccHHHHHH
Confidence 2257899996 99999999999999999888 33455678999
Q ss_pred HHHHHHhhhcHHHHHHHHHHH
Q psy4339 242 LIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 242 la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|.++...|++++|+++++.+
T Consensus 190 l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 190 MENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHH
Confidence 999999999999999977655
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=2.3e-16 Score=123.96 Aligned_cols=161 Identities=12% Similarity=-0.080 Sum_probs=131.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...++.|..+++++++. .|....++..+|.++ ...|++++|+.+++++++. .|....++.
T Consensus 21 ~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~ 80 (225)
T 2vq2_A 21 GQDYRQATASIEDALKS--------DPKNELAWLVRAEIY----QYLKVNDKAQESFRQALSI--------KPDSAEINN 80 (225)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHH----HHcCChHHHHHHHHHHHHh--------CCCChHHHH
Confidence 34466777777777765 344467889999777 6999999999999999987 344456788
Q ss_pred HHHHHHHHHhhhhHHHHhh-hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISV-QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.+| .++... |++++|+.++++++. .+..|....++.++|.++...|++++|+.+++++++..
T Consensus 81 ~l~----------~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 143 (225)
T 2vq2_A 81 NYG----------WFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ- 143 (225)
T ss_dssp HHH----------HHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHH----------HHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888 667999 999999999999988 13456667789999999999999999999999998763
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh-hhhh
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND-NLKL 210 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 210 (303)
|....++..+|.++. ..|++++|+.++++++...+ +++.
T Consensus 144 -------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 144 -------PQFPPAFKELARTKM-LAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp -------TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred -------CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 334567899999997 99999999999999999887 5543
No 64
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=2.8e-18 Score=127.02 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=107.5
Q ss_pred HHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHH
Q psy4339 39 ELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALV 118 (303)
Q Consensus 39 ~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 118 (303)
.||.++ ..+|++++|+..+++++.. +|.....+..+| .+|...|++++|+++|+++++
T Consensus 2 ~LG~~~----~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la----------~~y~~~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 2 PLGSMR----RSKADVERYIASVQGSTPS--------PRQKSIKGFYFA----------KLYYEAKEYDLAKKYICTYIN 59 (150)
T ss_dssp -----C----CCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHH----------HHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHH----HHcChHHHHHHHHHHhccc--------CcccHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHH
Confidence 477555 7899999999999988654 566667778899 777999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHH-
Q psy4339 119 LSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKL- 197 (303)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~- 197 (303)
+ +|....++.++|.+|..+|++++|+.+|++++++. |....++.++|.+|. ..|++++|...
T Consensus 60 ~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~~~~~~~aa~~~ 122 (150)
T 4ga2_A 60 V--------QERDPKAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLC-KNDVTDGRAKYW 122 (150)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HHCSSSSHHHHH
T ss_pred h--------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HcCChHHHHHHH
Confidence 7 45567789999999999999999999999999874 555678999999997 99999887765
Q ss_pred HHHHHHhhh
Q psy4339 198 YFRSIEIND 206 (303)
Q Consensus 198 ~~~al~~~~ 206 (303)
+++++++.|
T Consensus 123 ~~~al~l~P 131 (150)
T 4ga2_A 123 VERAAKLFP 131 (150)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHhCc
Confidence 599999888
No 65
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.76 E-value=2.7e-16 Score=132.25 Aligned_cols=186 Identities=11% Similarity=0.073 Sum_probs=145.5
Q ss_pred HHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q psy4339 41 AYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLS 120 (303)
Q Consensus 41 a~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 120 (303)
|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++|+..+++++..
T Consensus 127 a~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~- 183 (359)
T 3ieg_A 127 ALDA----FDGADYTAAITFLDKILEV--------CVWDAELRELRA----------ECFIKEGEPRKAISDLKAASKL- 183 (359)
T ss_dssp HHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHH----HHccCHHHHHHHHHHHHHh--------CCCchHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHh-
Confidence 6666 6999999999999999887 344457788889 7779999999999999999885
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH---------HHHHHHHHHHhhcCH
Q psy4339 121 LKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS---------VGHLASLYNYHMLEY 191 (303)
Q Consensus 121 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~~la~~~~~~~g~~ 191 (303)
.|....++..+|.++...|++++|+..++++++.. ++++..... ...+|.++. ..|++
T Consensus 184 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~ 250 (359)
T 3ieg_A 184 -------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELI-RDGRY 250 (359)
T ss_dssp -------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHH-HTTCH
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHHH-HcCCH
Confidence 34445678999999999999999999999999764 444443322 335589997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhh--------hhhhhhhhhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHH
Q psy4339 192 HKAEKLYFRSIEINDNLKL--------FSASYSGLEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTN 260 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~--------~~~~~~~l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (303)
++|+..+++++...++++. .+.++...+.+.+|+..+ ....|....++..+|.++...|++++|..+++
T Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999887553 344455555555665322 22356667789999999999999999999654
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
.+
T Consensus 331 ~a 332 (359)
T 3ieg_A 331 AA 332 (359)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 66
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=4.2e-17 Score=135.63 Aligned_cols=213 Identities=11% Similarity=0.028 Sum_probs=157.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|..+|+++++. .|....++..+|.++ ...|++++|+.+++++++. .|....++..
T Consensus 35 ~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~ 94 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQA--------APEREEAWRSLGLTQ----AENEKDGLAIIALNHARML--------DPKDIAVHAA 94 (327)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc--------CcCCHHHHHH
Confidence 4456667777776654 345667888999877 5999999999999999987 3445677888
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHH----------HHHHH-HH-HHHHhhcHHHHHH
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK----------HYGNI-GR-LYQSMQKFDEAER 153 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------~~~~l-a~-~~~~~~~~~~A~~ 153 (303)
+| .++...|++++|+..+++++.... ..+.... ....+ |. ++...|++++|+.
T Consensus 95 la----------~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 95 LA----------VSHTNEHNANAALASLRAWLLSQP-----QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HH----------HHHHHTTCHHHHHHHHHHHHHTST-----TTTTC--------------------CCTTSHHHHHHHHH
T ss_pred HH----------HHHHHcCCHHHHHHHHHHHHHhCC-----ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 88 777999999999999999998532 2211111 11122 55 6889999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh----hhhhhhhhhhhhHHHHhhh-
Q psy4339 154 MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----LFSASYSGLEYHYRDLKLF- 228 (303)
Q Consensus 154 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~l~~~~~a~~~~- 228 (303)
+++++++.. |....++..+|.++. ..|++++|+.++++++...++++ ..+..+...+.+.+|+..+
T Consensus 160 ~~~~~~~~~--------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 160 LLHAALEMN--------PNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHS--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhC--------CCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999998763 344577899999997 99999999999999999888654 2455555556666665322
Q ss_pred --ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 --SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....|....++..+|.++...|++++|.++++.+
T Consensus 231 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 231 RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2234566678999999999999999999965444
No 67
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.75 E-value=1.2e-16 Score=134.39 Aligned_cols=187 Identities=13% Similarity=-0.033 Sum_probs=148.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|+.+|+++++. .|..+.++..+|.++ ...|++++|+..++++++. .|....++.
T Consensus 16 ~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~ 75 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDG--------DPDNYIAYYRRATVF----LAMGKSKAALPDLTKVIAL--------KMDFTAARL 75 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh--------CCCcchHHH
Confidence 34567777777777764 345567999999877 5999999999999999987 345557888
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH------------HHHHHHHhhcHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGN------------IGRLYQSMQKFDEAE 152 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------la~~~~~~~~~~~A~ 152 (303)
.+| .++...|++++|+..++++++.. +.......++.. +|.++...|++++|+
T Consensus 76 ~l~----------~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 76 QRG----------HLLLKQGKLDEAEDDFKKVLKSN-----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHH----------HHHHHHTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHH----------HHHHHcCChHHHHHHHHHHHhcC-----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 899 77799999999999999998852 200033333333 489999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccc
Q psy4339 153 RMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASY 232 (303)
Q Consensus 153 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~ 232 (303)
.+++++++.. |....++..+|.++. ..|++++|+..+++++...|
T Consensus 141 ~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~-------------------------- 185 (359)
T 3ieg_A 141 TFLDKILEVC--------VWDAELRELRAECFI-KEGEPRKAISDLKAASKLKS-------------------------- 185 (359)
T ss_dssp HHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCS--------------------------
T ss_pred HHHHHHHHhC--------CCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC--------------------------
Confidence 9999998763 344567899999997 99999999999999998766
Q ss_pred ccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 233 SGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....++..+|.++...|++++|..+++.+
T Consensus 186 -~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 186 -DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566889999999999999999855443
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=2.1e-16 Score=126.81 Aligned_cols=157 Identities=8% Similarity=0.019 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+.++..+| ..+...|++++|+.++++++.. .|....++..+|.++...|++++|+.+++++
T Consensus 36 ~~~~~~~~a----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 36 ARDAYIQLG----------LGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHH----------HHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 477888888 6668899999999999998885 2334567888999999999999999999998
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--hhhhhh----hhhhhhhhhhhhHHHHhhh---c
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE--INDNLK----LFSASYSGLEYHYRDLKLF---S 229 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~--~~~~~~----~~~~~~~~l~~~~~a~~~~---~ 229 (303)
++.. |....++..+|.++. ..|++++|+.++++++. ..+..+ .++..+...+.+.+|+..+ .
T Consensus 98 ~~~~--------~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 98 LASD--------SRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHC--------cCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8763 334567888999997 89999999999999988 333222 2333444444455554222 1
Q ss_pred cccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 230 ASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
...|....++..+|.++...|++++|..+++.+
T Consensus 169 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 169 RLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 224455677889999999999999999855443
No 69
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.75 E-value=1.3e-16 Score=143.78 Aligned_cols=189 Identities=10% Similarity=-0.021 Sum_probs=138.6
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.++.|..+|++++++ .|....++..+|.++ ...|++++|+..|+++++. .|....++..+
T Consensus 388 ~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l 447 (597)
T 2xpi_A 388 KISEARRYFSKSSTM--------DPQFGPAWIGFAHSF----AIEGEHDQAISAYTTAARL--------FQGTHLPYLFL 447 (597)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHH
T ss_pred cHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CccchHHHHHH
Confidence 344455555555443 233345666666555 4667777777777766654 22334556666
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| .+|...|++++|+++|+++++. .|....++..+|.+|...|++++|+.+|++++++....
T Consensus 448 ~----------~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 508 (597)
T 2xpi_A 448 G----------MQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT- 508 (597)
T ss_dssp H----------HHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-
T ss_pred H----------HHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-
Confidence 6 6668888888888888888875 12234678899999999999999999999999886543
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHH
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVY 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~ 246 (303)
+.++.....++..+|.++. ..|++++|+..++++++..| ....++..+|.+|
T Consensus 509 ~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p---------------------------~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYR-KLKMYDAAIDALNQGLLLST---------------------------NDANVHTAIALVY 560 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSS---------------------------CCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCC---------------------------CChHHHHHHHHHH
Confidence 2232224788999999997 99999999999999998766 4456799999999
Q ss_pred HhhhcHHHHHHHHHHH
Q psy4339 247 ECLENFEKMTEFTNKL 262 (303)
Q Consensus 247 ~~~g~~~~A~~~~~~~ 262 (303)
...|++++|.++++.+
T Consensus 561 ~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 561 LHKKIPGLAITHLHES 576 (597)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 9999999999965544
No 70
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.75 E-value=2.4e-16 Score=137.17 Aligned_cols=109 Identities=14% Similarity=0.023 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHH-----HHHHhhhhHHHHhhhhHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALI-----LEEIALDSNELISVQFYK 107 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-----~~~~~~~~~~~~~~~~~~ 107 (303)
...++..+|.++ ...|++++|+.+|+++++. .++++....++..++.+ +...+ ..+...|+++
T Consensus 93 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~ 160 (450)
T 2y4t_A 93 FTAARLQRGHLL----LKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQA---LNAFGSGDYT 160 (450)
T ss_dssp CHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTCHH
T ss_pred cHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHH
Confidence 345566666555 4666666666666666543 22232111333333221 11111 5567788888
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+|+..+++++... |....++..+|.+|...|++++|+.+++++++.
T Consensus 161 ~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 161 AAIAFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888877642 222334444555555555555555555554443
No 71
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=3.9e-17 Score=134.35 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=49.7
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHH
Q psy4339 146 QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225 (303)
Q Consensus 146 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~ 225 (303)
|++++|+.+|+++++.. |....+++++|.++. .+|++++|+..+++++...|
T Consensus 180 ~~~~eA~~~~~~~l~~~--------p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p------------------- 231 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKC--------SPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDS------------------- 231 (291)
T ss_dssp THHHHHHHHHHHHHHHS--------CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-------------------
T ss_pred hHHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC-------------------
Confidence 55555555555555431 222334555555554 55555555555555555444
Q ss_pred hhhccccccHHHHHHhHHHHHHhhhcHHHH-HHHHHHH
Q psy4339 226 KLFSASYSGLEYDYRGLIHVYECLENFEKM-TEFTNKL 262 (303)
Q Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~ 262 (303)
....++.++|.++...|+..++ .++++.+
T Consensus 232 --------~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 232 --------GHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp --------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5666799999999999999875 4576554
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.74 E-value=8.4e-17 Score=122.44 Aligned_cols=167 Identities=12% Similarity=0.062 Sum_probs=139.9
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.+..+..+..+|.++ ...|++++|+..++++++. .|....++..+| .++...|++++|
T Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~----------~~~~~~~~~~~A 61 (186)
T 3as5_A 4 DDIRQVYYRDKGISH----AKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLG----------IAYVKTGAVDRG 61 (186)
T ss_dssp CCHHHHHHHHHHHHH----HHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred cchhhHHHHHHHHHH----HHhcCHHHHHHHHHHHHHh--------CccChHHHHHHH----------HHHHHcCCHHHH
Confidence 345678889999777 5899999999999988654 344467788888 667999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
..+++++++. .|....++..+|.++...|++++|+.++++++... |....++..+|.++. ..|
T Consensus 62 ~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~-~~~ 124 (186)
T 3as5_A 62 TELLERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------PINFNVRFRLGVALD-NLG 124 (186)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cHhHHHHHHHHHHHH-HcC
Confidence 9999999986 23445678899999999999999999999998763 334567899999997 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++++|+.++++++...+ ....++..+|.++...|++++|..+++.+
T Consensus 125 ~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 125 RFDEAIDSFKIALGLRP---------------------------NEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc---------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999998776 33567899999999999999999966544
No 73
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.74 E-value=4.1e-16 Score=115.88 Aligned_cols=152 Identities=19% Similarity=0.291 Sum_probs=129.2
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 75 NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
+.+..+.++..+| .++...|++++|+.++++++++.++. ++....+.++.++|.++..+|++++|+.+
T Consensus 4 d~~~~~~~~~~l~----------~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 71 (164)
T 3ro3_A 4 SRAAQGRAFGNLG----------NTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEY 71 (164)
T ss_dssp CHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455778889999 66799999999999999999998764 45566778999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG 234 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~ 234 (303)
+++++++.+.. ++.+....++.++|.++. ..|++++|+.++++++.+.+ .. ...+.
T Consensus 72 ~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~-------------------~~--~~~~~ 127 (164)
T 3ro3_A 72 YKKTLLLARQL--KDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQ-------------------EL--KDRIG 127 (164)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH-------------------HT--TCHHH
T ss_pred HHHHHHHHHHh--CCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH-------------------Hc--cchHh
Confidence 99999998775 455667888999999997 99999999999999999887 21 23345
Q ss_pred HHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 235 LEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
...++..+|.++...|++++|.+++ +.+
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6778999999999999999999955 444
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=1.6e-15 Score=129.03 Aligned_cols=233 Identities=14% Similarity=0.012 Sum_probs=172.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSEN-LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
..++.|...++++++.. +.++ ...+.++..+|.++ ...|++++|..++++++.+.... ++......++.
T Consensus 28 g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~ 97 (373)
T 1hz4_A 28 GNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVL----HCKGELTRSLALMQQTEQMARQH--DVWHYALWSLI 97 (373)
T ss_dssp TCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHH----HhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 44667777787777653 2233 34567889999776 58999999999999999998774 23334567788
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++| .++...|++++|+.++++++++..+..++.+|....++.++|.++...|++++|..++++++.+...
T Consensus 98 ~la----------~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 98 QQS----------EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHH----------HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 888 6669999999999999999999887654445777888999999999999999999999999988654
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh--h-h-hh-------hhhhhhhhhHHHHhhhc---c
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL--K-L-FS-------ASYSGLEYHYRDLKLFS---A 230 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~--~-~-~~-------~~~~~l~~~~~a~~~~~---~ 230 (303)
. .++....++.++|.++. ..|++++|..++++++.+.+.. + . .. ..+...+...+|...+. .
T Consensus 168 ~---~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 168 Y---QPQQQLQCLAMLIQCSL-ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp S---CGGGGHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred c---CcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 2 22335578899999997 9999999999999999886532 1 1 11 11223344444432211 1
Q ss_pred cc----ccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 231 SY----SGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 231 ~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.. +.....+..+|.++...|++++|...++.+
T Consensus 244 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 122346789999999999999999955444
No 75
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.74 E-value=8.8e-17 Score=132.40 Aligned_cols=154 Identities=13% Similarity=-0.016 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
.....+..+|.++ ...|++++|+.+++++++..... .+....+.+++++| .+|...|++++|+.
T Consensus 113 ~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg----------~~y~~~~~~~~A~~ 176 (293)
T 2qfc_A 113 QFLQWQYYVAAYV----LKKVDYEYCILELKKLLNQQLTG--IDVYQNLYIENAIA----------NIYAENGYLKKGID 176 (293)
T ss_dssp HHHHHHHHHHHHH----HTSSCHHHHHHHHHHHHTTCCCS--SCTTHHHHHHHHHH----------HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHH----------HHHHHcCCHHHHHH
Confidence 3456677788655 58899999999999999874432 22333577899999 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 112 LHQNALVLSLKHFGENNVQ-TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
+|++++++.+.. ++.+. ...++.++|.+|..+|++++|+.++++++++.... .+....+.++.++|.+|. .+|+
T Consensus 177 ~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~--~~~~~~~~~~~~lg~~y~-~~g~ 251 (293)
T 2qfc_A 177 LFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLR-KLEY 251 (293)
T ss_dssp HHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCSSHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHH-HcCC
Confidence 999999987764 23333 33789999999999999999999999999997552 444567889999999997 9999
Q ss_pred HHHH-HHHHHHHHHhhh
Q psy4339 191 YHKA-EKLYFRSIEIND 206 (303)
Q Consensus 191 ~~~A-~~~~~~al~~~~ 206 (303)
+++| ..++++|+.+.+
T Consensus 252 ~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 252 EEAEIEDAYKKASFFFD 268 (293)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 9999 888999999887
No 76
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=7.1e-17 Score=134.24 Aligned_cols=213 Identities=15% Similarity=0.089 Sum_probs=154.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH--
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH-- 83 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-- 83 (303)
..++.|...+++++++ .|....++..+|.++ ...|++++|+..++++++.. +..+......
T Consensus 69 ~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ 131 (327)
T 3cv0_A 69 EKDGLAIIALNHARML--------DPKDIAVHAALAVSH----TNEHNANAALASLRAWLLSQ-----PQYEQLGSVNLQ 131 (327)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTS-----TTTTTC------
T ss_pred CCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHhH
Confidence 4456777777777765 344567889999777 69999999999999998762 2222211110
Q ss_pred --------HHH-HHHHHHHhhhhH-HHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHH
Q psy4339 84 --------RVK-ALILEEIALDSN-ELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAER 153 (303)
Q Consensus 84 --------~~l-a~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 153 (303)
..+ + . ++...|++++|+.+++++++. .|....++..+|.++...|++++|+.
T Consensus 132 ~~~~~~~~~~~~~----------~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 132 ADVDIDDLNVQSE----------DFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH----------hHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 011 2 3 468899999999999999885 23345678899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhh-
Q psy4339 154 MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLF- 228 (303)
Q Consensus 154 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~- 228 (303)
+++++++.. |....++..+|.++. ..|++++|+.++++++...++++. ++.++...+.+.+|...+
T Consensus 194 ~~~~~~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 194 NLRRAVELR--------PDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhC--------CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999998763 344567889999997 999999999999999998876442 444455555555554221
Q ss_pred --cccccc------------HHHHHHhHHHHHHhhhcHHHHHHHH-HHH
Q psy4339 229 --SASYSG------------LEYDYRGLIHVYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 229 --~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~-~~~ 262 (303)
....|. ...++..+|.++...|++++|...+ +.+
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 112233 6778999999999999999999954 444
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.73 E-value=1.2e-16 Score=126.48 Aligned_cols=159 Identities=14% Similarity=0.035 Sum_probs=128.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
..-++.|+..|++++++. + +....++.++|.++ ...|++++|+.+++++++. +|....++.
T Consensus 20 ~~~~~~A~~~~~~al~~~-----~--~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~--------~p~~~~~~~ 80 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLT-----N--NQDSVTAYNCGVCA----DNIKKYKEAADYFDIAIKK--------NYNLANAYI 80 (228)
T ss_dssp TTCHHHHHHHHHHHHHHT-----T--TCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHT--------TCSHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcc-----C--CCCcHHHHHHHHHH----HHhhcHHHHHHHHHHHHHh--------CcchHHHHH
Confidence 345677778888877761 1 12235777799877 5999999999999999976 455678889
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV----QTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.+| .+|...|++++|+..++++++.. ++++ ..+.++.++|.++..+|++++|+.+|+++++
T Consensus 81 ~l~----------~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 81 GKS----------AAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHH----------HHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 999 77799999999999999999973 2333 2346799999999999999999999999987
Q ss_pred HHHHhcCCCchH--HHHHHHHHHHHHHHhhcCH---------------------------HHHHHHHHHHHHhhh
Q psy4339 161 IKEKVLGKDDYE--VGLSVGHLASLYNYHMLEY---------------------------HKAEKLYFRSIEIND 206 (303)
Q Consensus 161 ~~~~~~~~~~~~--~~~~~~~la~~~~~~~g~~---------------------------~~A~~~~~~al~~~~ 206 (303)
+ .|. ...++.++|.+|. ..|+. ++|+.++++++++.|
T Consensus 146 ~--------~p~~~~~~~~~~l~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 146 V--------TSKKWKTDALYSLGVLFY-NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp S--------SCHHHHHHHHHHHHHHHH-HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred c--------CCCcccHHHHHHHHHHHH-HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5 366 7789999999996 89888 788888888888777
No 78
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.73 E-value=5.5e-16 Score=134.88 Aligned_cols=188 Identities=9% Similarity=-0.029 Sum_probs=146.6
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.++.|+.+|++++++ .|....++..+|.++ ...|++++|+.+|+++++. +|....++..+
T Consensus 158 ~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l 217 (450)
T 2y4t_A 158 DYTAAIAFLDKILEV--------CVWDAELRELRAECF----IKEGEPRKAISDLKAASKL--------KNDNTEAFYKI 217 (450)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCGGGGHHHHHHHHHH--------HCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 445566666666554 345567899999877 5999999999999999887 34446788888
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH---------HHHHHHHHHhhcHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY---------GNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~~la~~~~~~~~~~~A~~~~~~ 157 (303)
| .++...|++++|+..+++++... ++++.....+ ..+|.++...|++++|+.+|++
T Consensus 218 ~----------~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 282 (450)
T 2y4t_A 218 S----------TLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282 (450)
T ss_dssp H----------HHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred H----------HHHHHcCCHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9 77799999999999999999752 3333332222 4459999999999999999999
Q ss_pred HHHHHHHhcCCCchH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHH
Q psy4339 158 AIAIKEKVLGKDDYE-VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLE 236 (303)
Q Consensus 158 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~ 236 (303)
++++. ++++. ....+..+|.++. ..|++++|+.++++++.+.| ...
T Consensus 283 ~l~~~-----p~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p---------------------------~~~ 329 (450)
T 2y4t_A 283 VMKTE-----PSIAEYTVRSKERICHCFS-KDEKPVEAIRVCSEVLQMEP---------------------------DNV 329 (450)
T ss_dssp HHHHC-----CSSHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCT---------------------------TCH
T ss_pred HHhcC-----CcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCc---------------------------ccH
Confidence 99853 33333 3568899999997 99999999999999998877 345
Q ss_pred HHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 237 YDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.++..+|.++...|++++|..+++.+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66888899999999999998854443
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.72 E-value=3.5e-15 Score=126.83 Aligned_cols=188 Identities=15% Similarity=-0.009 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+.+...+|.++ ...|++++|..++++++.... ..+......++.++| .++...|++++|...
T Consensus 13 ~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~ 75 (373)
T 1hz4_A 13 HAEFNALRAQVA----INDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLG----------EVLHCKGELTRSLAL 75 (373)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHH----------HHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHH----------HHHHhcCcHHHHHHH
Confidence 456777888666 589999999999999988631 122233566788888 666999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
+++++.+.... ++......++.++|.++..+|++++|+.++++++++.+...+..+|....++.++|.++. ..|+++
T Consensus 76 ~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~ 152 (373)
T 1hz4_A 76 MQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLD 152 (373)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHH
Confidence 99999998764 334455677899999999999999999999999999887655555778888999999997 999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|..++++++.+.+ .. ..+....++..+|.++...|++++|..+++..
T Consensus 153 ~A~~~~~~al~~~~-------------------~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 153 EAEASARSGIEVLS-------------------SY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHHTT-------------------TS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-------------------cc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999887 21 22235577889999999999999999955443
No 80
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.3e-15 Score=130.46 Aligned_cols=193 Identities=5% Similarity=-0.018 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
....++..||.+| ...|++++|.+++.+++.+.... .+......+..++| .++...|++++|+.
T Consensus 53 ~~~~al~~l~~~y----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~ 116 (434)
T 4b4t_Q 53 EQETSILELGQLY----VTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIE----------KFEQVPDSLDDQIF 116 (434)
T ss_dssp HHHHHHHHHHHHH----HHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHH----------HHCSCCSCHHHHHH
T ss_pred hHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHH----------HHHhCCCCHHHHHH
Confidence 3456789999877 69999999999999999987764 23334556677777 66688999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
++++++.+..+. .+.+..+.++.++|.+|...|+|++|..++++++...... .+.+....++..+|.+|. .+|++
T Consensus 117 ~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~ 191 (434)
T 4b4t_Q 117 VCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYH-KLRNL 191 (434)
T ss_dssp HHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHH-HhCcH
Confidence 999999998765 4456678899999999999999999999999999877554 456788899999999997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHHHHH
Q psy4339 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKLSEW 265 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~ 265 (303)
++|..++++++.+.+ .. ...+......+..+|.++...|++++|.. +.+.+..+
T Consensus 192 ~~A~~~~~~al~~~~-------------------~~-~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 192 AKSKASLTAARTAAN-------------------SI-YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHHH-------------------HS-CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-------------------cC-CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999887 22 22222356778889999999999999999 55665443
No 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-15 Score=135.05 Aligned_cols=228 Identities=17% Similarity=0.105 Sum_probs=162.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHh--CCCc----HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh
Q psy4339 5 KILLKNLSLCSQLALKLKQVLF--GSEN----LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL 78 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~--~~~~----~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (303)
...++.|+.+|+++++.++... .+++ |..+.++..+|.++ ...|++++|+.+++++++. .|.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~l~~--------~~~ 269 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK----FLKNDPLGAHEDIKKAIEL--------FPR 269 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH----HHSSCHHHHHHHHHHHHHH--------CCC
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhh--------Ccc
Confidence 4568889999999998776555 3333 77889999999877 5999999999999999876 122
Q ss_pred hHHHHHHHHHHHHHHhh------------------------hhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 79 LTSAHRVKALILEEIAL------------------------DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~------------------------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
..++..+|.++...+. ...++...|++++|+..+++++.. .|....+
T Consensus 270 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~ 340 (514)
T 2gw1_A 270 -VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFP 340 (514)
T ss_dssp -HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHH
Confidence 4445555533321100 005557777777777777777764 1223446
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh-----
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK----- 209 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~----- 209 (303)
+..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|++++|+.++++++...++++
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 411 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELENKLDGIYVG 411 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSSSCSSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccchHHHH
Confidence 7788888888888888888888887653 333457889999997 99999999999999999888654
Q ss_pred -----hhhhhhhh---hhhhHHHHhhh---ccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 210 -----LFSASYSG---LEYHYRDLKLF---SASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 210 -----~~~~~~~~---l~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..+..+.. .+.+.+|+..+ ....|....++..+|.++...|++++|..+++.+
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 24455555 66666665322 2234566678899999999999999999955443
No 82
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.71 E-value=1.2e-15 Score=137.57 Aligned_cols=212 Identities=11% Similarity=0.005 Sum_probs=130.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
..+.++.|..+|+++++. .|....++..++.++ ...|++++|+..+++++.. .|....++
T Consensus 317 ~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~--------~~~~~~~~ 376 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASL----HESGEKNKLYLISNDLVDR--------HPEKAVTW 376 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTSHHHH
T ss_pred HhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHH----HHhCCHHHHHHHHHHHHhh--------CcccHHHH
Confidence 345677888888888755 122334555666555 4677777777777766643 23334555
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
..+| ..|...|++++|..+|+++++. .|....++..+|.+|...|++++|+.+|+++++..
T Consensus 377 ~~l~----------~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 377 LAVG----------IYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHH----------HHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6666 5556677777777777776664 22334456667777777777777777777666532
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHhhhc---------c
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLKLFS---------A 230 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~~~~---------~ 230 (303)
|....++..+|.+|. ..|++++|+.+|+++++..++++. ++..+...+.+.+|++.+. .
T Consensus 438 -------~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 438 -------QGTHLPYLFLGMQHM-QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp -------TTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred -------ccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 222345666777775 677777777777777666554432 2333333344444432111 1
Q ss_pred cccc-HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 231 SYSG-LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 231 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..|. ...++..+|.++...|++++|.++++.+
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2444 3778999999999999999999966544
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.71 E-value=1.2e-15 Score=119.20 Aligned_cols=162 Identities=14% Similarity=0.015 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH----------------HHHHHHHHhhhh
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV----------------KALILEEIALDS 97 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~ 97 (303)
+..+...|..+ ...|++++|+.+|+++++. +|....++.. +|
T Consensus 4 ~~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg---------- 61 (208)
T 3urz_A 4 VDEMLQKVSAA----IEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELA---------- 61 (208)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHH----------
Confidence 45667778767 5999999999999999987 4555566666 88
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.+|...|++++|+..|++++++ +|....++.++|.++..+|++++|+.+|++++++. |....++
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~ 125 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--------ADNLAAN 125 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHH
Confidence 7779999999999999999996 35556789999999999999999999999999874 5556789
Q ss_pred HHHHHHHHHhhcCH--HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHH
Q psy4339 178 GHLASLYNYHMLEY--HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKM 255 (303)
Q Consensus 178 ~~la~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (303)
.++|.+|. ..|+. ..+...+++++...+ ...+++.+|.++...|++++|
T Consensus 126 ~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~a~~~~g~~~~~~~~~~~A 176 (208)
T 3urz_A 126 IFLGNYYY-LTAEQEKKKLETDYKKLSSPTK----------------------------MQYARYRDGLSKLFTTRYEKA 176 (208)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHC---CCCH----------------------------HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHH-HHhHHHHHHHHHHHHHHhCCCc----------------------------hhHHHHHHHHHHHHccCHHHH
Confidence 99999995 77643 445555555442221 223577889999999999999
Q ss_pred HHHHHHH
Q psy4339 256 TEFTNKL 262 (303)
Q Consensus 256 ~~~~~~~ 262 (303)
+.+++.+
T Consensus 177 ~~~~~~a 183 (208)
T 3urz_A 177 RNSLQKV 183 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9966544
No 84
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.71 E-value=1.6e-15 Score=134.87 Aligned_cols=188 Identities=14% Similarity=0.056 Sum_probs=153.1
Q ss_pred HhHHHHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFG--SENLQ----VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS 81 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~--~~~~~----~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (303)
+..+...+.+|++.+++.+. ++++. .+.++..+|.++ ...|++++|+.+++++++. +|. ..
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~----~~~~~~~~A~~~~~~~~~~--------~~~-~~ 277 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH----FLKNNLLDAQVLLQESINL--------HPT-PN 277 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CCC-HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH----HhcccHHHHHHHHHHHHhc--------CCC-ch
Confidence 44555677777777777654 33333 366888999766 5999999999999999987 333 57
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 82 AHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 82 ~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
++..+| .++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++++
T Consensus 278 ~~~~l~----------~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 278 SYIFLA----------LTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHH----------HHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH----------HHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 788888 7779999999999999999986 2344567899999999999999999999999986
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHh
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRG 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~ 241 (303)
. |....++..+|.++. ..|++++|+.++++++...| ....++..
T Consensus 340 ~--------~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~ 383 (537)
T 3fp2_A 340 N--------PENVYPYIQLACLLY-KQGKFTESEAFFNETKLKFP---------------------------TLPEVPTF 383 (537)
T ss_dssp C--------TTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT---------------------------TCTHHHHH
T ss_pred C--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC---------------------------CChHHHHH
Confidence 3 333467899999997 99999999999999998877 33456889
Q ss_pred HHHHHHhhhcHHHHHHHHHHH
Q psy4339 242 LIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 242 la~~~~~~g~~~~A~~~~~~~ 262 (303)
+|.++...|++++|+.+++.+
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999955444
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.69 E-value=6.7e-17 Score=148.09 Aligned_cols=177 Identities=9% Similarity=-0.156 Sum_probs=139.0
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 8 LKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 8 l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++.|++.++++++..-...+..+|..+.++..+|.++ ...|++++|+..|+++++. +|....+++++|
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg 474 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRAL----LDLGDVAKATRKLDDLAER--------VGWRWRLVWYRA 474 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHH----HhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHH
Confidence 4556666666652111111234577778999999877 5999999999999999987 556678899999
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 88 LILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
.++...|++++|+..|++++++ .|....++.++|.++..+|++++ +.+|++++++.
T Consensus 475 ----------~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~----- 530 (681)
T 2pzi_A 475 ----------VAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN----- 530 (681)
T ss_dssp ----------HHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-----
T ss_pred ----------HHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-----
Confidence 6669999999999999999997 34456788999999999999999 99999999874
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHH
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYE 247 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 247 (303)
|....+++++|.++. .+|++++|+..|++++++.+ ....++.++|.++.
T Consensus 531 ---P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P---------------------------~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 531 ---DGVISAAFGLARARS-AEGDRVGAVRTLDEVPPTSR---------------------------HFTTARLTSAVTLL 579 (681)
T ss_dssp ---TTCHHHHHHHHHHHH-HTTCHHHHHHHHHTSCTTST---------------------------THHHHHHHHHHHTC
T ss_pred ---CchHHHHHHHHHHHH-HcCCHHHHHHHHHhhcccCc---------------------------ccHHHHHHHHHHHH
Confidence 555678999999997 99999999999999998877 55666777777775
Q ss_pred hhhc
Q psy4339 248 CLEN 251 (303)
Q Consensus 248 ~~g~ 251 (303)
..|+
T Consensus 580 ~~~~ 583 (681)
T 2pzi_A 580 SGRS 583 (681)
T ss_dssp ----
T ss_pred ccCC
Confidence 5443
No 86
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=5.9e-16 Score=110.87 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|+.+..+.++|..+ +..|+|++|+.+|++++++ +|....++.++| .+|...|++++|
T Consensus 9 nP~~a~~~~~~G~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~----------~~~~~~~~~~~A 66 (126)
T 4gco_A 9 NPELAQEEKNKGNEY----FKKGDYPTAMRHYNEAVKR--------DPENAILYSNRA----------ACLTKLMEFQRA 66 (126)
T ss_dssp CHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHh----------hHHHhhccHHHH
Confidence 699999999999888 5999999999999999987 566678899999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
+..+++++++ +|....++.++|.++..+|++++|+..|++++++. |....++.+++.++
T Consensus 67 ~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--------P~~~~a~~~l~~~l 125 (126)
T 4gco_A 67 LDDCDTCIRL--------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD--------PSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHC
T ss_pred HHHHHHHHHh--------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------cCCHHHHHHHHHhc
Confidence 9999999996 34556789999999999999999999999999874 44455667777653
No 87
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=4.7e-16 Score=111.38 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=95.1
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 75 NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
-+|..+..+.++| ..|...|+|++|+..|++++++ .|....++.++|.+|..+|++++|+..
T Consensus 8 inP~~a~~~~~~G----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~ 69 (126)
T 4gco_A 8 INPELAQEEKNKG----------NEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDD 69 (126)
T ss_dssp CCHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHH
Confidence 4788899999999 7779999999999999999986 355567899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++++++. |....++.++|.++. .+|++++|+..|++++++.|
T Consensus 70 ~~~al~~~--------p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 70 CDTCIRLD--------SKFIKGYIRKAACLV-AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhh--------hhhhHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCc
Confidence 99999873 555678999999997 99999999999999999988
No 88
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=3.3e-16 Score=124.72 Aligned_cols=165 Identities=18% Similarity=0.085 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..+..+..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++|+.
T Consensus 21 ~~~~~~~~~a~~~----~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la----------~~~~~~~~~~~A~~ 78 (243)
T 2q7f_A 21 MASMTGGQQMGRG----SEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFA----------NLLSSVNELERALA 78 (243)
T ss_dssp -------------------------CCTTHHHHHTT--------CTTCHHHHHHHH----------HHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHH----HHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHH----------HHHHHcCCHHHHHH
Confidence 3567889999777 5999999999999999874 444567888888 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~ 191 (303)
.++++++. .|....++..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|++
T Consensus 79 ~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~-~~~~~ 141 (243)
T 2q7f_A 79 FYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLV-KLEQP 141 (243)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHH-HTSCH
T ss_pred HHHHHHHc--------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HhccH
Confidence 99999986 23446778999999999999999999999999864 223457889999997 99999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 192 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
++|+.++++++...+ ....++..+|.++...|++++|+.+++.+
T Consensus 142 ~~A~~~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 142 KLALPYLQRAVELNE---------------------------NDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999998877 34457889999999999999999965444
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=3.2e-15 Score=116.76 Aligned_cols=154 Identities=12% Similarity=-0.043 Sum_probs=122.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH----------------HHHHHHhhhhhcccHHHHHHHHHHHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDE----------------LAYALYVNEYSSGRFTESRRHAEKAIQTF 68 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~y~~~~~~g~~~~A~~~~~~al~~~ 68 (303)
.+-++.|+..|++++++ +|+.+.++.. +|.++ ...|++++|+..|++++++
T Consensus 17 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAY----KKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp TTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHH-
Confidence 34567778888887776 5777778888 99877 5999999999999999998
Q ss_pred HhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH
Q psy4339 69 KNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF 148 (303)
Q Consensus 69 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 148 (303)
+|....++.++| .++...|++++|+..|++++++ +|....++.++|.+|..+|+.
T Consensus 84 -------~p~~~~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 84 -------APNNVDCLEACA----------EMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp -------CTTCHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHH
Confidence 566678899999 7779999999999999999996 455567899999999887654
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 149 --DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 149 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+...+.+++. ++ | ...+++++|.++. ..|++++|+.+|++++++.|
T Consensus 139 ~~~~~~~~~~~~~~-------~~-~-~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 139 EKKKLETDYKKLSS-------PT-K-MQYARYRDGLSKL-FTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHC---C-------CC-H-HHHHHHHHHHHHH-HHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhC-------CC-c-hhHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCC
Confidence 445555555431 22 2 2346788899997 89999999999999999888
No 90
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=6.8e-15 Score=119.63 Aligned_cols=201 Identities=17% Similarity=0.090 Sum_probs=149.1
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhh----cccHHHHHHHHHHHHHHHHhhCCcchhhhHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYS----SGRFTESRRHAEKAIQTFKNLLPENHLLLTSA 82 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (303)
-++.|+.+|+++++ +++ +.++..+|.++ .. .+++++|+.+|+++++. + ...+
T Consensus 21 ~~~~A~~~~~~a~~-------~~~---~~a~~~lg~~~----~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a 76 (273)
T 1ouv_A 21 DFTQAKKYFEKACD-------LKE---NSGCFNLGVLY----YQGQGVEKNLKKAASFYAKACDL-------N---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHH-------TTC---HHHHHHHHHHH----HHTSSSCCCHHHHHHHHHHHHHT-------T---CHHH
T ss_pred CHHHHHHHHHHHHH-------CCC---HHHHHHHHHHH----HcCCCcCCCHHHHHHHHHHHHHC-------C---CHHH
Confidence 45566666666655 233 35788999777 57 99999999999999875 1 3477
Q ss_pred HHHHHHHHHHHhhhhHHHHh----hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHH
Q psy4339 83 HRVKALILEEIALDSNELIS----VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERM 154 (303)
Q Consensus 83 ~~~la~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~ 154 (303)
+.++| .+|.. .+++++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+
T Consensus 77 ~~~lg----------~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 77 CHLLG----------NLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp HHHHH----------HHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHH----------HHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 88889 66678 99999999999999874 2 34678899999999 9999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHhhhhh--hhhhhhhhh----hhhhHHH
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSIEINDNL--KLFSASYSG----LEYHYRD 224 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~----l~~~~~a 224 (303)
++++++.. ...++.++|.+|. . .+++++|+.+++++++..... ..++..+.. .+...+|
T Consensus 137 ~~~a~~~~----------~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 137 FTKACDLN----------DGDGCTILGSLYD-AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHTT----------CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHhcC----------cHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 99998741 2356889999997 8 899999999999999874321 134445544 4555555
Q ss_pred Hhhhccc-cccHHHHHHhHHHHHHh----hhcHHHHHHHHHHH
Q psy4339 225 LKLFSAS-YSGLEYDYRGLIHVYEC----LENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~~-~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 262 (303)
+..+... ......++..+|.+|.. .+++++|+++++.+
T Consensus 206 ~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 206 LARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 5322211 00125678999999999 99999999955443
No 91
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-14 Score=128.69 Aligned_cols=224 Identities=14% Similarity=0.028 Sum_probs=159.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
..-++.|+..|+++++.. | .+.++..+|.++ ...|++++|+..++++++. +|....++.
T Consensus 19 ~g~~~~A~~~~~~al~~~--------p-~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 77 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--------E-DPVFYSNLSACY----VSVGDLKKVVEMSTKALEL--------KPDYSKVLL 77 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--------C-CHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CSCCHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--------c-cHHHHHhHHHHH----HHHhhHHHHHHHHHHHhcc--------ChHHHHHHH
Confidence 345677777788777761 3 267899999877 5999999999999999987 455668888
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHh-----------------------h-----------------
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKH-----------------------F----------------- 124 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----------------------~----------------- 124 (303)
.+| .++...|++++|+..|++++...... .
T Consensus 78 ~l~----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 78 RRA----------SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred HHH----------HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 899 77799999999999999987643100 0
Q ss_pred -------CC------------------------CcHHHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHHHHHHhc--CC
Q psy4339 125 -------GE------------------------NNVQTAKHYGNIGRLYQS---MQKFDEAERMQLKAIAIKEKVL--GK 168 (303)
Q Consensus 125 -------~~------------------------~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~--~~ 168 (303)
.+ ..|.....+..+|.++.. .|++++|+.+++++++..+... .+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 227 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCc
Confidence 00 002226667788888886 9999999999999998654433 22
Q ss_pred Cc----hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHHh---hhccccccHHH
Q psy4339 169 DD----YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDLK---LFSASYSGLEY 237 (303)
Q Consensus 169 ~~----~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~~---~~~~~~~~~~~ 237 (303)
++ |....++..+|.++. ..|++++|+.++++++...++ +. .+.++...+.+.+|+. ......|....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 305 (514)
T 2gw1_A 228 EDEKLKEKLAISLEHTGIFKF-LKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS 305 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH
T ss_pred cccccChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH
Confidence 22 677889999999997 999999999999999988775 21 2223333333333332 11122344455
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
++..+|.++...|++++|+.+++.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 677778888888888888774433
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.67 E-value=5.5e-16 Score=114.59 Aligned_cols=136 Identities=13% Similarity=-0.046 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+++|++.+++.. +.+|+....+..+|.+| ...|+|++|+.+|++++++ +|....++.++|
T Consensus 13 ~e~ai~~~~~a~-~~~p~~~~~~~~la~~y----~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg------- 72 (150)
T 4ga2_A 13 VERYIASVQGST-PSPRQKSIKGFYFAKLY----YEAKEYDLAKKYICTYINV--------QERDPKAHRFLG------- 72 (150)
T ss_dssp HHHHHHHHHHHS-CSHHHHHTTHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH-------
T ss_pred HHHHHHHHHHhc-ccCcccHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH-------
Confidence 444555555443 34688888999999877 5999999999999999998 566678999999
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHHHHHhcCCCchHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM-QLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~~~~~~~~~~~~ 173 (303)
.+|...|++++|+..|++++++ .|....++.++|.+|..+|++++|... +++|+++. |..
T Consensus 73 ---~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--------P~~ 133 (150)
T 4ga2_A 73 ---LLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--------PGS 133 (150)
T ss_dssp ---HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--------TTC
T ss_pred ---HHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--------cCC
Confidence 7779999999999999999996 355567899999999999999887765 58999875 444
Q ss_pred HHHHHHHHHHHHHhhcC
Q psy4339 174 GLSVGHLASLYNYHMLE 190 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~ 190 (303)
..++...+.++. .+|+
T Consensus 134 ~~~~~l~~~ll~-~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLD-CEGE 149 (150)
T ss_dssp HHHHHHHHHHHH-TCCC
T ss_pred HHHHHHHHHHHH-HhCc
Confidence 456777888886 7775
No 93
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=7.1e-16 Score=125.04 Aligned_cols=191 Identities=10% Similarity=-0.011 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..+..+|.++ ...|++++|+..|+++++. +|....++..+| .++...|++++|+..++
T Consensus 4 ~~~~~~a~~~----~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~----------~~~~~~~~~~~A~~~~~ 61 (272)
T 3u4t_A 4 DVEFRYADFL----FKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRA----------VCYYELAKYDLAQKDIE 61 (272)
T ss_dssp -CHHHHHHHH----HTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHHhhHHHHHHHHH
Confidence 4677888777 5999999999999999876 334445778888 67799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
+++.. +++......++..+|.++...|++++|+.++++++++. |....++..+|.++. ..|++++|
T Consensus 62 ~a~~~-----~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A 127 (272)
T 3u4t_A 62 TYFSK-----VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFY-NKGNFPLA 127 (272)
T ss_dssp HHHTT-----SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHhc-----cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHH-HccCHHHH
Confidence 99982 12333447789999999999999999999999999864 334567899999997 99999999
Q ss_pred HHHHHHHHHhhhhhhh----hh-hhhhhhhhhHHHHh---hhccccccHHHHHHhHHHHHHhhhc---HHHHHHHHHHH
Q psy4339 195 EKLYFRSIEINDNLKL----FS-ASYSGLEYHYRDLK---LFSASYSGLEYDYRGLIHVYECLEN---FEKMTEFTNKL 262 (303)
Q Consensus 195 ~~~~~~al~~~~~~~~----~~-~~~~~l~~~~~a~~---~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~ 262 (303)
+.++++++.+.++++. ++ ..+.. ..+.+|+. ......|....++..+|.++...|+ +++|..+++.+
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 9999999998765442 22 11111 23334442 2223345567788999999999999 88899954433
No 94
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.66 E-value=1.1e-14 Score=104.29 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
.++.+.++.+||+++| .+|+|++|+.+|++|+++ +|..+.++.++| .+|..+|++++|
T Consensus 4 ~~d~A~a~~~lG~~~~----~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg----------~~~~~~~~~~~A 61 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAY----KQKDFEKAHVHYDKAIEL--------DPSNITFYNNKA----------AVYFEEKKFAEC 61 (127)
T ss_dssp HHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHH----------HHHHHhhhHHHH
Confidence 3578889999999885 999999999999999988 566678899999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+..+++++++.... ....+..+.++.++|.++..+|++++|+++|++++..
T Consensus 62 ~~~~~~al~~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 62 VQFCEKAVEVGRET-RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999987653 3445677889999999999999999999999999875
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=2.2e-14 Score=113.35 Aligned_cols=176 Identities=11% Similarity=-0.041 Sum_probs=131.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
..++.|+..|+++++. .+++|....++..+|.++ ...|++++|+..|+++++.. ++++....++..
T Consensus 18 g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~----~~~~~~~~A~~~~~~~l~~~-----P~~~~~~~a~~~ 83 (225)
T 2yhc_A 18 GNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAY----YKNADLPLAQAAIDRFIRLN-----PTHPNIDYVMYM 83 (225)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHC-----cCCCcHHHHHHH
Confidence 4456666666666654 345666778999999888 49999999999999999872 445555678888
Q ss_pred HHHHHHHHhhh--------hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHH--------------HHHHHHHHHHH
Q psy4339 86 KALILEEIALD--------SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTA--------------KHYGNIGRLYQ 143 (303)
Q Consensus 86 la~~~~~~~~~--------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------~~~~~la~~~~ 143 (303)
+|.++..++.. ...+...|++++|+..|+++++.. |+++... .....+|.+|.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88665332100 022345789999999999999864 2333221 22357899999
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 144 SMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 144 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+|++++|+..|+++++.. ++++....++..+|.+|. .+|++++|+..++++....|
T Consensus 159 ~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~-~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYR-QMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCCS
T ss_pred HcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCC
Confidence 9999999999999999875 566777789999999997 99999999999998877665
No 96
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.65 E-value=8.7e-15 Score=104.90 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=97.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
.++.+.++.++| ..+...|+|++|+.+|++|+++ +|....++.++|.+|..+|++++|+..+
T Consensus 4 ~~d~A~a~~~lG----------~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 4 MTDAAIAEKDLG----------NAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 345677888899 7779999999999999999996 3555778999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++++.... ....+..+.++.++|.++. .+|++++|+.+|++++...+
T Consensus 66 ~~al~~~~~~-~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 66 EKAVEVGRET-RADYKLIAKAMSRAGNAFQ-KQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCccc-chhhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCc
Confidence 9999987653 3445667889999999997 99999999999999998766
No 97
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=2.2e-14 Score=116.53 Aligned_cols=187 Identities=18% Similarity=0.151 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHh----hhhH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELIS----VQFY 106 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~----~~~~ 106 (303)
|..+.++..+|.++ ...|++++|+.+|+++++. ....++.++| .+|.. .+++
T Consensus 3 ~~~~~a~~~lg~~~----~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg----------~~~~~g~~~~~~~ 58 (273)
T 1ouv_A 3 EQDPKELVGLGAKS----YKEKDFTQAKKYFEKACDL----------KENSGCFNLG----------VLYYQGQGVEKNL 58 (273)
T ss_dssp --CHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHT----------TCHHHHHHHH----------HHHHHTSSSCCCH
T ss_pred CCChHHHHHHHHHH----HhCCCHHHHHHHHHHHHHC----------CCHHHHHHHH----------HHHHcCCCcCCCH
Confidence 44567889999777 5899999999999999871 2236788899 66688 9999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. + ...++.++|.
T Consensus 59 ~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~ 118 (273)
T 1ouv_A 59 KKAASFYAKACDL-------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGG 118 (273)
T ss_dssp HHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHH
Confidence 9999999999884 2 35678899999999 99999999999999874 1 2467899999
Q ss_pred HHHHh----hcCHHHHHHHHHHHHHhhhhhh--hhhhhhhh----hhhhHHHHhhhccc-cccHHHHHHhHHHHHHh---
Q psy4339 183 LYNYH----MLEYHKAEKLYFRSIEINDNLK--LFSASYSG----LEYHYRDLKLFSAS-YSGLEYDYRGLIHVYEC--- 248 (303)
Q Consensus 183 ~~~~~----~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~----l~~~~~a~~~~~~~-~~~~~~~~~~la~~~~~--- 248 (303)
+|. . .|++++|+.+++++++..+... .++..+.. .+...+|+..+... ......++..+|.+|..
T Consensus 119 ~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 119 IYH-DGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHH-cCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 997 9 9999999999999998754211 24444443 44444554322211 01234678999999999
Q ss_pred -hhcHHHHHHHHHHH
Q psy4339 249 -LENFEKMTEFTNKL 262 (303)
Q Consensus 249 -~g~~~~A~~~~~~~ 262 (303)
.+++++|+++++.+
T Consensus 198 ~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 198 ATKNFKEALARYSKA 212 (273)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 99999999966444
No 98
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.64 E-value=6.3e-15 Score=111.94 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+++|++.+++.+. ..|....++..+|.++ ...|++++|+.+++++++. .|....++..+|
T Consensus 24 ~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a------- 83 (186)
T 3as5_A 24 YSQAVMLLEQVYD-ADAFDVDVALHLGIAY----VKTGAVDRGTELLERSLAD--------APDNVKVATVLG------- 83 (186)
T ss_dssp HHHHHHHHTTTCC-TTSCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH-------
T ss_pred HHHHHHHHHHHHH-hCccChHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH-------
Confidence 3455555555443 2344567899999877 5999999999999999887 344457788888
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
.++...|++++|..++++++.. .|....++..+|.++...|++++|+.+++++++.. |...
T Consensus 84 ---~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~ 144 (186)
T 3as5_A 84 ---LTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--------PNEG 144 (186)
T ss_dssp ---HHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCH
T ss_pred ---HHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------ccch
Confidence 6669999999999999999986 23345678899999999999999999999998763 3345
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..+|.++. ..|++++|..++++++.+.+
T Consensus 145 ~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 145 KVHRAIAFSYE-QMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC
Confidence 67899999997 99999999999999999888
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.62 E-value=2.6e-15 Score=114.00 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|.....+..+|..+ ...|++++|+..|+++++. +|....++..+| .++...|++++|+
T Consensus 3 ~~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la----------~~~~~~g~~~~A~ 60 (176)
T 2r5s_A 3 ASPDEQLLKQVSEL----LQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKA----------DCLLETKQFELAQ 60 (176)
T ss_dssp ---CTTHHHHHHHH----HHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHH----------HHHHHCCCHHHHH
Confidence 33445677888777 5999999999999999887 566778899999 6669999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLY-QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
..+++++... + ++. ....++.+. ...+...+|+..+++++++. |....++.++|.++. ..|
T Consensus 61 ~~~~~a~~~~-----p-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~-~~g 122 (176)
T 2r5s_A 61 ELLATIPLEY-----Q-DNS---YKSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYN-QVG 122 (176)
T ss_dssp HHHTTCCGGG-----C-CHH---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHhhhcc-----C-ChH---HHHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-Hcc
Confidence 9999987641 2 332 233334332 23344556899999998764 555678899999997 999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 190 EYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
++++|+..+++++...| .+....++..+|.++...|+.++|.. |.+++
T Consensus 123 ~~~~A~~~~~~~l~~~p-------------------------~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 123 RDEEALELLWNILKVNL-------------------------GAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHTTCT-------------------------TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCc-------------------------ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99999999999998877 11223468899999999999999999 55544
No 100
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=5.8e-14 Score=115.37 Aligned_cols=202 Identities=11% Similarity=-0.011 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHH
Q psy4339 15 SQLALKLKQVLFGSENLQV-AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI 93 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~-~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 93 (303)
|+.|++..++... .+|+. ......++.++ ...|++++|+..++. . +|....++..++
T Consensus 15 y~~ai~~~~~~~~-~~p~~~~e~~~~l~r~y----i~~g~~~~al~~~~~----------~-~~~~~~a~~~la------ 72 (291)
T 3mkr_A 15 YQQCINEAQRVKP-SSPERDVERDVFLYRAY----LAQRKYGVVLDEIKP----------S-SAPELQAVRMFA------ 72 (291)
T ss_dssp HHHHHHHHHHSCC-CSHHHHHHHHHHHHHHH----HHTTCHHHHHHHSCT----------T-SCHHHHHHHHHH------
T ss_pred HHHHHHHHHhccc-CCchhhHHHHHHHHHHH----HHCCCHHHHHHHhcc----------c-CChhHHHHHHHH------
Confidence 5667776665443 34554 56777778777 699999999976643 1 233456777777
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH
Q psy4339 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173 (303)
Q Consensus 94 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 173 (303)
..+...|++++|++.+++.+.. ..+|....++..+|.++...|++++|+..+++ |..
T Consensus 73 ----~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~ 129 (291)
T 3mkr_A 73 ----EYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDS 129 (291)
T ss_dssp ----HHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCS
T ss_pred ----HHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCC
Confidence 6668899999999999988762 11355566788999999999999999999876 223
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh--hhhhhhhhh----hhhHHHHhh---hccccccHHHHHHhHHH
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK--LFSASYSGL----EYHYRDLKL---FSASYSGLEYDYRGLIH 244 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~l----~~~~~a~~~---~~~~~~~~~~~~~~la~ 244 (303)
..++..+|.++. .+|++++|+..+++++...|++. .++..+.++ +.+.+|+.. .....|....+++++|.
T Consensus 130 ~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 130 LECMAMTVQILL-KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 457889999997 99999999999999999887654 233333333 455555422 22336677788999999
Q ss_pred HHHhhhcHHHHHHHH-HHH
Q psy4339 245 VYECLENFEKMTEFT-NKL 262 (303)
Q Consensus 245 ~~~~~g~~~~A~~~~-~~~ 262 (303)
++...|++++|...+ +++
T Consensus 209 ~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 999999999999954 444
No 101
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.62 E-value=3.7e-15 Score=125.09 Aligned_cols=159 Identities=10% Similarity=0.019 Sum_probs=130.6
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCC---
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGE--- 126 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--- 126 (303)
..+++++|+..++++++. .|..+..+.++| .++...|++++|+..|++++.+.......
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g----------~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~ 186 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERG----------TVYFKEGKYKQALLQYKKIVSWLEYESSFSNE 186 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHHhhccccCChH
Confidence 567788888888877665 566788899999 77799999999999999999975321000
Q ss_pred ----CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 127 ----NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 127 ----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
..+....++.++|.+|..+|++++|+.++++++++. |....+++++|.+|. .+|++++|+.+|++++
T Consensus 187 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 187 EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHL-AVNDFELARADFQKVL 257 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 012346789999999999999999999999999874 555678999999997 9999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HH-HHH
Q psy4339 203 EINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FT-NKL 262 (303)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~-~~~ 262 (303)
++.| ....++..++.++...|++++|.. .+ +.+
T Consensus 258 ~l~P---------------------------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 258 QLYP---------------------------NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCS---------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 445678999999999999999966 44 444
No 102
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=2e-14 Score=119.13 Aligned_cols=214 Identities=12% Similarity=0.008 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh---hhhcccH-------HHHHHHHHHHHHHHHhhCCcchhh
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVN---EYSSGRF-------TESRRHAEKAIQTFKNLLPENHLL 78 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~---~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~ 78 (303)
+.|...|++++.. +|..+.++..+|..+... ....|++ ++|...|++|++.. +|.
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~ 97 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKK 97 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTT
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------Ccc
Confidence 4555666666655 456667888888655200 0025776 89999999998731 455
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
...++..+| ..+...|++++|...|++++++ .++++. .++.++|.++...|++++|...|+++
T Consensus 98 ~~~~~~~~~----------~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 98 NMLLYFAYA----------DYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp CHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 567788888 6668999999999999999984 223332 27889999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh----hhhhhhhhhhHHHHhhh----cc
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF----SASYSGLEYHYRDLKLF----SA 230 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~l~~~~~a~~~~----~~ 230 (303)
++.. +. ...++...+.+.....|++++|..+|+++++..|+++.+ +..+..++...+|...+ ..
T Consensus 161 ~~~~-----p~---~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 161 REDA-----RT---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HTST-----TC---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HhcC-----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8742 22 234455555553203799999999999999998876542 33333334444443211 11
Q ss_pred --ccc-cHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 231 --SYS-GLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 231 --~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..| .....+..++......|+.++|...++.+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 133 35678888999999999999999855443
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.60 E-value=1.6e-14 Score=118.56 Aligned_cols=168 Identities=12% Similarity=0.015 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|.....+..+|..+ ...|++++|+..|+++++. +|....++.++| .++...|++++|+
T Consensus 114 p~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la----------~~~~~~g~~~~A~ 171 (287)
T 3qou_A 114 PREEELXAQQAMQL----MQESNYTDALPLLXDAWQL--------SNQNGEIGLLLA----------ETLIALNRSEDAE 171 (287)
T ss_dssp CCHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CCchhhHHHHHHHH----HhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHH----------HHHHHCCCHHHHH
Confidence 34556788899777 5999999999999999987 566668899999 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
..+++++.. .|.........+..+...++.++|+..+++++... |....++.++|.++. ..|+
T Consensus 172 ~~l~~~~~~--------~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~-~~g~ 234 (287)
T 3qou_A 172 AVLXTIPLQ--------DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLH-QVGR 234 (287)
T ss_dssp HHHTTSCGG--------GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTC
T ss_pred HHHHhCchh--------hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHH-Hccc
Confidence 999998774 22334556677888889999999999999999864 556678999999998 9999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 191 YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
+++|+..|++++...| ......++..++.++...|+.++|.. +.+++
T Consensus 235 ~~~A~~~l~~~l~~~p-------------------------~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 235 NEEALELLFGHLRXDL-------------------------TAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHHCT-------------------------TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-------------------------ccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999887 11225668999999999999999999 55555
No 104
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=7.6e-14 Score=113.03 Aligned_cols=184 Identities=11% Similarity=-0.066 Sum_probs=123.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
..-++.|...|++++++ +|....++..+|.++ ...|++++|+.+|++++++ .|....++.
T Consensus 56 ~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~ 115 (275)
T 1xnf_A 56 LGLRALARNDFSQALAI--------RPDMPEVFNYLGIYL----TQAGNFDAAYEAFDSVLEL--------DPTYNYAHL 115 (275)
T ss_dssp TTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCTHHHH
T ss_pred cccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH----HHccCHHHHHHHHHHHHhc--------CccccHHHH
Confidence 34566777777777766 344567899999877 5999999999999999987 344467888
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH--
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK-- 162 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 162 (303)
.+| .++...|++++|+.+++++++.. ++++ .....++ ++...|++++|+.++++++...
T Consensus 116 ~la----------~~~~~~g~~~~A~~~~~~a~~~~-----~~~~---~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 116 NRG----------IALYYGGRDKLAQDDLLAFYQDD-----PNDP---FRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHH----------HHHHHhccHHHHHHHHHHHHHhC-----CCCh---HHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCc
Confidence 899 77799999999999999999862 2333 2222223 3466799999999997776542
Q ss_pred ------------------------HHhcCCC---chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy4339 163 ------------------------EKVLGKD---DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASY 215 (303)
Q Consensus 163 ------------------------~~~~~~~---~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (303)
++..... .|....++..+|.++. ..|++++|+.++++++.+.|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p--------- 246 (275)
T 1xnf_A 177 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL-SLGDLDSATALFKLAVANNV--------- 246 (275)
T ss_dssp CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCC---------
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCc---------
Confidence 1111110 0122455666666665 66666666666666665544
Q ss_pred hhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHH
Q psy4339 216 SGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEF 258 (303)
Q Consensus 216 ~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (303)
.. +...+.++...|++++|++.
T Consensus 247 ------------------~~---~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 247 ------------------HN---FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp ------------------TT---CHHHHHHHHHHHHHHHC---
T ss_pred ------------------hh---HHHHHHHHHHHHHHHhhHHH
Confidence 21 22346778888999998883
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.60 E-value=4.1e-14 Score=110.78 Aligned_cols=159 Identities=18% Similarity=0.060 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh----hHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ----FYKEA 109 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~----~~~~A 109 (303)
+.++..||.++ ...+++++|+.+|+++.+. ..+.++.++| .+|.. + ++++|
T Consensus 18 ~~a~~~lg~~~----~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg----------~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 18 RRAQYYLADTW----VSSGDYQKAEYWAQKAAAQ----------GDGDALALLA----------QLKIR-NPQQADYPQA 72 (212)
T ss_dssp HHHHHHHHHHH----HHHTCHHHHHHHHHHHHHT----------TCHHHHHHHH----------HHTTS-STTSCCHHHH
T ss_pred HHHHHHHHHHH----hcCCCHHHHHHHHHHHHHc----------CCHHHHHHHH----------HHHHc-CCCCCCHHHH
Confidence 46899999777 5899999999999999764 2347788899 55566 6 89999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
+.+|+++.+. . ...++.+||.+|.. .+++++|+.+|+++++.. +......++++||.+|.
T Consensus 73 ~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 73 RQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp HHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchHHHHHHHHHHHH
Confidence 9999999652 2 34578899999998 899999999999998641 11245778999999997
Q ss_pred Hh----hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh-h-----cHHHH
Q psy4339 186 YH----MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL-E-----NFEKM 255 (303)
Q Consensus 186 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A 255 (303)
. .+++++|+.+|+++.+. + ....++++||.+|... | ++++|
T Consensus 137 -~g~g~~~d~~~A~~~~~~A~~~-~---------------------------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A 187 (212)
T 3rjv_A 137 -SGVHGPEDDVKASEYFKGSSSL-S---------------------------RTGYAEYWAGMMFQQGEKGFIEPNKQKA 187 (212)
T ss_dssp -HTSSSSCCHHHHHHHHHHHHHT-S---------------------------CTTHHHHHHHHHHHHCBTTTBCCCHHHH
T ss_pred -cCCCCCCCHHHHHHHHHHHHHc-C---------------------------CCHHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 8 78999999999999876 3 1223688999999864 3 89999
Q ss_pred HHHHHHH
Q psy4339 256 TEFTNKL 262 (303)
Q Consensus 256 ~~~~~~~ 262 (303)
+.+++..
T Consensus 188 ~~~~~~A 194 (212)
T 3rjv_A 188 LHWLNVS 194 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9966554
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.59 E-value=1.6e-14 Score=129.73 Aligned_cols=149 Identities=14% Similarity=0.056 Sum_probs=112.3
Q ss_pred cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHH
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQ 130 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 130 (303)
.|++++|+..++++++. +|....++.++| .++...|++++|+..++++++. .|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~--------~p~ 55 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLA----------DAELGMGDTTAGEMAVQRGLAL--------HPG 55 (568)
T ss_dssp ---------------------------CCHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHTT--------STT
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 57899999999999876 455568889999 6779999999999999999985 345
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL 210 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 210 (303)
...++.++|.+|..+|++++|+.++++++++. |....++.++|.++. ..|++++|+.++++++++.+
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p---- 122 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLP---- 122 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC----
Confidence 56789999999999999999999999999863 444678899999997 99999999999999998877
Q ss_pred hhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh---hcHHHHHHHHHH
Q psy4339 211 FSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL---ENFEKMTEFTNK 261 (303)
Q Consensus 211 ~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~ 261 (303)
....++.++|.++... |++++|.+.++.
T Consensus 123 -----------------------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 123 -----------------------EEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp -----------------------TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -----------------------CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3456788999999999 999999995433
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.59 E-value=2.9e-15 Score=137.21 Aligned_cols=157 Identities=9% Similarity=-0.106 Sum_probs=130.9
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..|++++|+..++++++..-......+|....++..+| .++...|++++|+..|+++++. +|
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a----------~~~~~~g~~~~A~~~~~~al~~--------~p 464 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEV----------RALLDLGDVAKATRKLDDLAER--------VG 464 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHH--------HC
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHH----------HHHHhcCCHHHHHHHHHHHhcc--------Cc
Confidence 78999999999999982211111233567778889999 7779999999999999999996 34
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
....++.++|.++..+|++++|+..|++++++. |....++.++|.++. .+|++++ +.+|++++++.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~-~~g~~~~-~~~~~~al~~~P--- 531 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAE-LAGNTDE-HKFYQTVWSTND--- 531 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHH-HHTCCCT-TCHHHHHHHHCT---
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH-HcCChHH-HHHHHHHHHhCC---
Confidence 456789999999999999999999999999874 445677899999997 9999999 999999999887
Q ss_pred hhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHH
Q psy4339 210 LFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNK 261 (303)
Q Consensus 210 ~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (303)
....+++++|.++...|++++|++.++.
T Consensus 532 ------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 532 ------------------------GVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4556799999999999999999995543
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.59 E-value=3.4e-14 Score=104.72 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=93.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|....+++.+| .++...|++++|+..|++++.+ +|....++.++|.++..+|++++|+.+|
T Consensus 32 ~p~~~~~~~~lg----------~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 32 PDDMMDDIYSYA----------YDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp CHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence 677788999999 6679999999999999999996 4556678999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++++. |....+++++|.+|. .+|++++|+.+|++++++.+
T Consensus 94 ~~al~l~--------P~~~~~~~~lg~~~~-~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 94 AVAFALG--------KNDYTPVFHTGQCQL-RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHS--------SSCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhC--------CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 9999875 444567899999997 99999999999999999988
No 109
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=7.8e-14 Score=115.58 Aligned_cols=151 Identities=8% Similarity=-0.069 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
+.|...|++|++ .-+|....++..+|..+ ...|++++|...|++++++ .+.++. .++.++|
T Consensus 81 ~~A~~~~~rAl~-------~~~p~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~- 141 (308)
T 2ond_A 81 DEAANIYERAIS-------TLLKKNMLLYFAYADYE----ESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYM- 141 (308)
T ss_dssp HHHHHHHHHHHT-------TTTTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHH-
T ss_pred HHHHHHHHHHHH-------HhCcccHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHH-
Confidence 455555555554 12456667899999766 6899999999999999985 222222 2677788
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcC
Q psy4339 89 ILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAIKEKVLG 167 (303)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~ 167 (303)
..+...|++++|...|+++++.. +. ....+...|.+... .|++++|..+|+++++..
T Consensus 142 ---------~~~~~~~~~~~A~~~~~~a~~~~-----p~---~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~----- 199 (308)
T 2ond_A 142 ---------KFARRAEGIKSGRMIFKKAREDA-----RT---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY----- 199 (308)
T ss_dssp ---------HHHHHHHCHHHHHHHHHHHHTST-----TC---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----
T ss_pred ---------HHHHHhcCHHHHHHHHHHHHhcC-----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 66689999999999999999842 22 23445555555433 799999999999999875
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 168 ~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
|....++.++|.++. ..|++++|..+|++++..
T Consensus 200 ---p~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 200 ---GDIPEYVLAYIDYLS-HLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp ---TTCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHS
T ss_pred ---CCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhc
Confidence 444567899999997 999999999999999985
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.58 E-value=1.6e-14 Score=129.74 Aligned_cols=154 Identities=14% Similarity=-0.042 Sum_probs=119.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
.++.|+..|+++++. +|..+.++..+|.++ ...|++++|+.+|+++++. +|....++.++
T Consensus 4 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 63 (568)
T 2vsy_A 4 DGPRELLQLRAAVRH--------RPQDFVAWLMLADAE----LGMGDTTAGEMAVQRGLAL--------HPGHPEAVARL 63 (568)
T ss_dssp -------------------------CCHHHHHHHHHHH----HHHTCHHHHHHHHHHHHTT--------STTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 456677777777655 455668999999877 5899999999999999986 45557888999
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 87 ALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
| .++...|++++|+.+++++++. .|....++.++|.++..+|++++|+.++++++++.
T Consensus 64 g----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 121 (568)
T 2vsy_A 64 G----------RVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---- 121 (568)
T ss_dssp H----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred H----------HHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 9 7779999999999999999996 34456788999999999999999999999999874
Q ss_pred CCCchHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHhhhh
Q psy4339 167 GKDDYEVGLSVGHLASLYNYHM---LEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~~---g~~~~A~~~~~~al~~~~~ 207 (303)
|....++.++|.++. .+ |++++|...++++++..++
T Consensus 122 ----p~~~~~~~~l~~~~~-~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 122 ----PEEPYITAQLLNWRR-RLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp ----TTCHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred ----CCCHHHHHHHHHHHH-HhhccccHHHHHHHHHHHHhcCCc
Confidence 444567899999997 99 9999999999999998874
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.58 E-value=6.7e-14 Score=103.15 Aligned_cols=105 Identities=13% Similarity=-0.014 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
.-+|+.+.++..+|.++ ...|++++|+.+|++++.+ +|....++.++| .++...|+++
T Consensus 30 ~l~p~~~~~~~~lg~~~----~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg----------~~~~~~g~~~ 87 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDF----YNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLA----------AIYQIKEQFQ 87 (151)
T ss_dssp CSCHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH----------HHHHHHccHH
Confidence 35688999999999888 5999999999999999988 566678899999 7779999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+|+..|++++++ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 88 ~Ai~~~~~al~l--------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 88 QAADLYAVAFAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHH--------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999997 23445678999999999999999999999999874
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.58 E-value=1.3e-14 Score=121.82 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=120.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc-------chhhhHHHHHHHHHHHHHHhhhhHHHHh
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE-------NHLLLTSAHRVKALILEEIALDSNELIS 102 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~~~~~ 102 (303)
.|..+.++..+|.++ ...|+|++|+.+|++++++....... ..+....++.++| .+|..
T Consensus 143 ~p~~a~~~~~~g~~~----~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla----------~~~~~ 208 (336)
T 1p5q_A 143 KLEQSTIVKERGTVY----FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA----------MCHLK 208 (336)
T ss_dssp HHHHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 577889999999888 59999999999999999984332100 1122367888889 77799
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
.|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+|++++++. |....++.++|.
T Consensus 209 ~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~l~~ 272 (336)
T 1p5q_A 209 LQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------PNNKAAKTQLAV 272 (336)
T ss_dssp TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHH
Confidence 99999999999999997 34556789999999999999999999999999874 444568899999
Q ss_pred HHHHhhcCHHHH-HHHHHHHHHhhh
Q psy4339 183 LYNYHMLEYHKA-EKLYFRSIEIND 206 (303)
Q Consensus 183 ~~~~~~g~~~~A-~~~~~~al~~~~ 206 (303)
++. .+|++++| ...|++++....
T Consensus 273 ~~~-~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 273 CQQ-RIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 997 99999999 567888776555
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=1.4e-14 Score=106.73 Aligned_cols=107 Identities=18% Similarity=0.069 Sum_probs=92.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|.....+..+| ..+...|++++|+..|++++.. .|....++.++|.++..+|++++|+.+|
T Consensus 17 ~p~~~~~~~~~g----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 17 SSDTLEQLYSLA----------FNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp CHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHhhHHHHHHHH----------HHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 566778888999 6779999999999999999986 3455677899999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
++++.+. |....+++++|.++. .+|++++|+.+|++++++.+++|
T Consensus 79 ~~al~l~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 79 SYGAVMD--------IXEPRFPFHAAECLL-QXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHS--------TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHhcC--------CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 9999874 444567899999997 99999999999999999988333
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.56 E-value=1.7e-13 Score=98.16 Aligned_cols=133 Identities=24% Similarity=0.263 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.++..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|++++|..+++
T Consensus 2 ~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a----------~~~~~~~~~~~A~~~~~ 59 (136)
T 2fo7_A 2 EAWYNLGNAY----YKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLG----------NAYYKQGDYDEAIEYYQ 59 (136)
T ss_dssp HHHHHHHHHH----HHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHH----HHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHH----------HHHHHhcCHHHHHHHHH
Confidence 4678889777 5899999999999999876 233456777788 66689999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
+++... |....++..+|.++...|++++|+.++++++... |....++..+|.++. ..|++++|
T Consensus 60 ~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~-~~~~~~~A 122 (136)
T 2fo7_A 60 KALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYY-KQGDYDEA 122 (136)
T ss_dssp HHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-TTTCHHHH
T ss_pred HHHHHC--------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH-HHccHHHH
Confidence 998852 3335578899999999999999999999998753 333467889999997 99999999
Q ss_pred HHHHHHHHHhhh
Q psy4339 195 EKLYFRSIEIND 206 (303)
Q Consensus 195 ~~~~~~al~~~~ 206 (303)
..++++++...|
T Consensus 123 ~~~~~~~~~~~~ 134 (136)
T 2fo7_A 123 IEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHccCC
Confidence 999999998766
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.54 E-value=1.3e-13 Score=101.50 Aligned_cols=103 Identities=12% Similarity=0.008 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|....++..+|.++ ...|++++|+..|++++.. +|....++.++| .++...|++++|
T Consensus 17 ~p~~~~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~A 74 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQ----YQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLG----------ACRQAMGQYDLA 74 (148)
T ss_dssp CHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred CHhhHHHHHHHHHHH----HHcCChHHHHHHHHHHHHc--------CcccHHHHHHHH----------HHHHHHhhHHHH
Confidence 688899999999887 5999999999999999987 455567888999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+..|++++.+ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 75 ~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 75 IHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999996 23445678999999999999999999999999886
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.54 E-value=6e-13 Score=99.27 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
...+..+..+|.++ ...|++++|+.+|+++++. .|....++.++| .++...|++++|+
T Consensus 10 ~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a----------~~~~~~~~~~~A~ 67 (166)
T 1a17_A 10 LKRAEELKTQANDY----FKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRS----------LAYLRTECYGYAL 67 (166)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHH----HHccCHHHHHHHHHHHHHh--------CCCChHHHHHHH----------HHHHHcCCHHHHH
Confidence 35678899999877 5999999999999999987 344567888899 6679999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~ 190 (303)
.++++++.. .|....++.++|.++..+|++++|+.++++++++. +.++. ......++..+. ..|+
T Consensus 68 ~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~-~~~~~~~~~~~~-~~~~ 132 (166)
T 1a17_A 68 GDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD-AKMKYQECNKIV-KQKA 132 (166)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH-HHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHH-HHHH
Confidence 999999996 23445678999999999999999999999999874 33332 233455666686 8999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4339 191 YHKAEKLYFRSIEIND 206 (303)
Q Consensus 191 ~~~A~~~~~~al~~~~ 206 (303)
+++|+.++.++..+.+
T Consensus 133 ~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 133 FERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccchHHHhc
Confidence 9999999999888776
No 117
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.54 E-value=4e-13 Score=98.25 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG----ENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
.+..+.+.| ..+...|+|++|+..|++|+++...... ...|....+|.++|.++..+|+|++|+.+
T Consensus 10 ~a~~~~~~G----------~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~ 79 (159)
T 2hr2_A 10 GAYLALSDA----------QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHS 79 (159)
T ss_dssp HHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456667777 6679999999999999999998654100 01133456999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH----HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSV----GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~----~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++|++++.+. +.-.|....+| +++|.++. .+|++++|+..|++++++.|
T Consensus 80 ~~kAL~l~n~~-~e~~pd~~~A~~~~~~~rG~aL~-~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 80 ADKALHYFNRR-GELNQDEGKLWISAVYSRALALD-GLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHH-CCTTSTHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcc-ccCCCchHHHHHHHHHhHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 99999986554 34457778888 99999997 99999999999999999998
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4e-13 Score=95.82 Aligned_cols=101 Identities=16% Similarity=0.050 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+..+..+| ..+...|++++|+..|+++++. .|....++.++|.++..+|++++|+..++++
T Consensus 3 ~a~~~~~~g----------~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 3 KAEEARLEG----------KEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 456677788 7779999999999999999996 3445678999999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++. |....++.++|.++. .+|++++|+..+++++.+.|
T Consensus 65 l~~~--------p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 65 IEKD--------PNFVRAYIRKATAQI-AVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHhC--------CCcHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhCc
Confidence 9874 445678999999997 99999999999999999996
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.53 E-value=1.5e-13 Score=107.16 Aligned_cols=141 Identities=14% Similarity=0.009 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..+..+..+|.++ ...|++++|+..|++++ .+ ...++.++| .++...|++++|+.
T Consensus 4 ~~~~~~~~~g~~~----~~~~~~~~A~~~~~~a~-------~~----~~~~~~~lg----------~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 4 VEAISLWNEGVLA----ADKKDWKGALDAFSAVQ-------DP----HSRICFNIG----------CMYTILKNMTEAEK 58 (213)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHTSS-------SC----CHHHHHHHH----------HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH----HHhCCHHHHHHHHHHHc-------CC----ChHHHHHHH----------HHHHHcCCHHHHHH
Confidence 3455678899777 59999999999999873 11 246888899 77799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL--------GKDDYEVGLSVGHLASL 183 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~ 183 (303)
++++++.+ .|....++.++|.++..+|++++|+.++++++++..... ....|....++.++|.+
T Consensus 59 ~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 59 AFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHh--------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 99999996 244567899999999999999999999999998642210 00335567889999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 184 YNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 184 ~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+. .+|++++|+.++++++.+.+
T Consensus 131 ~~-~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 131 YA-KKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HH-HTTCHHHHHHHHHHHHTTCC
T ss_pred HH-HccCHHHHHHHHHHHHHcCc
Confidence 97 99999999999999999887
No 120
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.6e-12 Score=110.28 Aligned_cols=181 Identities=13% Similarity=0.014 Sum_probs=148.6
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH 83 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (303)
..+.++.|.+++.+++++...+ .+......+...+|.++ ...|++++|+.++++++.+.... .+.+..+.++
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~ 138 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFE----QVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLS 138 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHC----SCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHH
Confidence 3455677888888888877653 23344556778888555 68999999999999999998875 3455578889
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q psy4339 84 RVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163 (303)
Q Consensus 84 ~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 163 (303)
.++| .+|...|+|++|..++++++...... .+.+....++..+|.+|..+|++++|..++++++.+..
T Consensus 139 ~~la----------~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 139 IKLA----------TLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHH----------HHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH----------HHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 9999 77799999999999999999887654 45678889999999999999999999999999999876
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.. +..+...+..+..+|.++. ..|++++|..++.+++...+
T Consensus 207 ~~-~~~~~~~~~~~~~~g~~~~-~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 207 SI-YCPTQTVAELDLMSGILHC-EDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HS-CCCHHHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHHHH
T ss_pred cC-CCchHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhh
Confidence 64 2233446778889999998 99999999999999998776
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=7.1e-13 Score=94.50 Aligned_cols=123 Identities=9% Similarity=-0.023 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|..+..+..+|..+ ...|+|++|+.+|++++++ +|....++.++| .++...|++++|+
T Consensus 1 p~~a~~~~~~g~~~----~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a----------~~~~~~~~~~~A~ 58 (126)
T 3upv_A 1 SMKAEEARLEGKEY----FTKSDWPNAVKAYTEMIKR--------APEDARGYSNRA----------AALAKLMSFPEAI 58 (126)
T ss_dssp CHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CchHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHH----------HHHHHhcCHHHHH
Confidence 35678899999877 5999999999999999987 455568899999 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
..+++++++ .|....++.++|.++..+|++++|+..+++++++.... .+.|....+...++.+..
T Consensus 59 ~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 59 ADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHH
Confidence 999999996 34456789999999999999999999999999987443 223445556666666653
No 122
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.52 E-value=1.7e-14 Score=126.07 Aligned_cols=154 Identities=11% Similarity=0.078 Sum_probs=125.4
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC----
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG---- 125 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 125 (303)
..+++++|+..+..+++. .|..+..+.++| ..+...|+|++|+..|++|+++......
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G----------~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~ 307 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKG----------TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK 307 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHH----------HHHHhCCCHHHHHHHHHHHHHHhcccccCChH
Confidence 456777888888776655 566788899999 7779999999999999999998543100
Q ss_pred ---CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 126 ---ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 126 ---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
...+....++.++|.+|..+|++++|+.++++++++. |....+++++|.+|. .+|++++|+..|++++
T Consensus 308 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQL-LMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 0022346889999999999999999999999999874 455678999999997 9999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 203 EINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
++.| ....++..++.++...|++++|..
T Consensus 379 ~l~P---------------------------~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 379 EVNP---------------------------QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTC-------------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 344568899999999999999887
No 123
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.52 E-value=4e-14 Score=109.52 Aligned_cols=153 Identities=11% Similarity=-0.014 Sum_probs=115.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|+|++|.+.+...... .+..+..+..+| ..+...|++++|+..|.+++.+.... ++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g----------~~~~~~~~~~~A~~~~~~al~~~~~~--~~~ 74 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEG----------NEFFKKNEINEAIVKYKEALDFFIHT--EEW 74 (198)
T ss_dssp -------CCCSGGGCCHHH--------HHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHTTTTC--TTC
T ss_pred hhhhhccccCchhhCCHHH--------HHHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHhcc--ccc
Confidence 4677888877777654332 445677788888 67799999999999999999864321 100
Q ss_pred ----------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 129 ----------VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 129 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
.....++.++|.++..+|++++|+.++++++++. |....++.++|.++. .+|++++|+.+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~-~~~~~~~A~~~~ 145 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANM-YFGFLEEAKENL 145 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHH-HcccHHHHHHHH
Confidence 0124788999999999999999999999999873 445678999999997 999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 199 FRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 199 ~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
++++.+.| ....++..++.++...++..++..
T Consensus 146 ~~al~~~p---------------------------~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 146 YKAASLNP---------------------------NNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp HHHHHHST---------------------------TCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHCC---------------------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877 445668889999999999988885
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.50 E-value=1.8e-12 Score=96.60 Aligned_cols=133 Identities=15% Similarity=0.056 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
..+..+..+| ..+...|++++|+..+++++.. .|....++.++|.++...|++++|+.++++
T Consensus 11 ~~~~~~~~~a----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 72 (166)
T 1a17_A 11 KRAEELKTQA----------NDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATR 72 (166)
T ss_dssp HHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567778888 7779999999999999999986 234467889999999999999999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHH
Q psy4339 158 AIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEY 237 (303)
Q Consensus 158 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~ 237 (303)
++.+. |....++.++|.++. ..|++++|+.++++++.+.+ .+ ....
T Consensus 73 a~~~~--------~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~p------------------------~~-~~~~ 118 (166)
T 1a17_A 73 AIELD--------KKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKP------------------------HD-KDAK 118 (166)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST------------------------TC-HHHH
T ss_pred HHHhC--------cccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCC------------------------CC-HHHH
Confidence 99863 444568899999997 99999999999999998877 11 1223
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 238 DYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....++..+...|++++|+++++..
T Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 119 MKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccch
Confidence 3456666688999999999966554
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.50 E-value=1.2e-12 Score=93.72 Aligned_cols=121 Identities=22% Similarity=0.290 Sum_probs=101.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++... |....++
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~ 72 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAW 72 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------CCchHHH
Confidence 6678999999999999999885 23345678899999999999999999999998753 3334578
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
..+|.++. ..|++++|+.++++++...+ ....++..+|.++...|++++|..
T Consensus 73 ~~l~~~~~-~~~~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 73 YNLGNAYY-KQGDYDEAIEYYQKALELDP---------------------------RSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHhCC---------------------------CChHHHHHHHHHHHHHccHHHHHH
Confidence 89999997 99999999999999998766 234568889999999999999999
Q ss_pred HHHHH
Q psy4339 258 FTNKL 262 (303)
Q Consensus 258 ~~~~~ 262 (303)
+++.+
T Consensus 125 ~~~~~ 129 (136)
T 2fo7_A 125 YYQKA 129 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 126
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.50 E-value=9.7e-13 Score=98.20 Aligned_cols=110 Identities=19% Similarity=0.099 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCC---C-------cHHHHHHHHHHHHHHHHhhc
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGE---N-------NVQTAKHYGNIGRLYQSMQK 147 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~~~la~~~~~~~~ 147 (303)
..+..+...| ..+...|+|++|+..|.+++.+....... . .|....++.++|.+|..+|+
T Consensus 9 ~~a~~~~~~G----------~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 9 KSVEALRQKG----------NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3567788888 77799999999999999999986553211 1 45567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 148 FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 148 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++|+.++++++.+. |....+++.+|.+|. .+|++++|+..|++++.+.|
T Consensus 79 ~~~A~~~~~~al~~~--------p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 79 LHEAEETSSEVLKRE--------ETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhcC--------CcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhcCC
Confidence 999999999999873 556778999999997 99999999999999999988
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.48 E-value=1.1e-12 Score=95.66 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=91.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|.....+..+| ..+...|++++|+..|++++.. +|....++.++|.++..+|++++|+.+|
T Consensus 14 ~p~~~~~~~~~a----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 14 SEDTLEQLYALG----------FNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp CHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 566677888899 6669999999999999999985 3455677899999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++.+. |....++.++|.++. .+|++++|+.+|++++.+.|
T Consensus 76 ~~al~~~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 76 SYGALMD--------INEPRFPFHAAECHL-QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHC--------TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC--------CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 9999874 334457899999997 99999999999999999988
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.48 E-value=5.2e-13 Score=97.47 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
-+|.....+..+|.++ ...|++++|+.+|++++.. +|.....+..+| .++...|++++
T Consensus 13 ~~p~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~ 70 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQ----YQAGKWDDAQKIFQALCML--------DHYDARYFLGLG----------ACRQSLGLYEQ 70 (142)
T ss_dssp CCHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHH----HHHccHHHHHHHHHHHHHh--------CCccHHHHHHHH----------HHHHHHhhHHH
Confidence 3688889999999877 5999999999999999987 455667888999 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
|+..|++++.+ .|....++.++|.++..+|++++|+.+|++++++.
T Consensus 71 A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 71 ALQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999996 23445578899999999999999999999999886
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.47 E-value=2.5e-13 Score=102.93 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=101.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
...|++++|+..++++++. +|....++..+| .++...|++++|+.+|++++.+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~~~~~~A~~~~~~al~~~-------- 74 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--------NPQNSEQWALLG----------EYYLWQNDYSNSLLAYRQALQLR-------- 74 (177)
T ss_dssp C-----CCCCHHHHHHHHH--------CCSCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred hhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHcC--------
Confidence 4689999999999999887 345567888899 77799999999999999999973
Q ss_pred HHHHHHHHHHHHH-HHHhhcH--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 129 VQTAKHYGNIGRL-YQSMQKF--DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 129 ~~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
|....++.++|.+ +...|++ ++|+.+++++++.. |....++..+|.++. ..|++++|+.++++++.+.
T Consensus 75 p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 75 GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAF-MQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhC
Confidence 2235678899999 8899999 99999999999863 444567899999997 9999999999999999988
Q ss_pred h
Q psy4339 206 D 206 (303)
Q Consensus 206 ~ 206 (303)
|
T Consensus 146 p 146 (177)
T 2e2e_A 146 S 146 (177)
T ss_dssp C
T ss_pred C
Confidence 8
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.47 E-value=1.6e-12 Score=92.63 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=104.4
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 75 NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
..|.....+..+| ..+...|++++|+..+++++.. .|....++..+|.++...|++++|+.+
T Consensus 7 ~~~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 68 (131)
T 2vyi_A 7 EDSAEAERLKTEG----------NEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQD 68 (131)
T ss_dssp CHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchhhhHHHHHHH----------HHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHH
Confidence 4566778888888 6779999999999999999986 233456789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG 234 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~ 234 (303)
+++++... |....++..+|.++. ..|++++|+.++++++...+ .
T Consensus 69 ~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p---------------------------~ 112 (131)
T 2vyi_A 69 CERAICID--------PAYSKAYGRMGLALS-SLNKHVEAVAYYKKALELDP---------------------------D 112 (131)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST---------------------------T
T ss_pred HHHHHhcC--------ccCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCc---------------------------c
Confidence 99999863 334567899999997 99999999999999998877 3
Q ss_pred HHHHHHhHHHHHHhhhcH
Q psy4339 235 LEYDYRGLIHVYECLENF 252 (303)
Q Consensus 235 ~~~~~~~la~~~~~~g~~ 252 (303)
...++..+|.++...|++
T Consensus 113 ~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 113 NETYKSNLKIAELKLREA 130 (131)
T ss_dssp CHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 345678899999888875
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.47 E-value=1e-12 Score=102.44 Aligned_cols=142 Identities=15% Similarity=0.043 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
...++++| ..+...|++++|+..|++++. + ...++.++|.+|...|++++|+.++++++
T Consensus 6 ~~~~~~~g----------~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 6 AISLWNEG----------VLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566777 666899999999999998841 1 24588999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHH
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDY 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~ 239 (303)
.+. |....++.++|.++. ..|++++|+.++++++...+.++.+. +. .......|....++
T Consensus 65 ~~~--------~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~--~~---------~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 65 NRD--------KHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLID--YK---------ILGLQFKLFACEVL 124 (213)
T ss_dssp HHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEE--CG---------GGTBCCEEEHHHHH
T ss_pred HhC--------ccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHH--HH---------HhccccCccchHHH
Confidence 873 445678999999997 99999999999999999887222110 00 00012345677889
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 240 RGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.++|.++...|++++|.++++.+
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999955443
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.47 E-value=2e-12 Score=96.64 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=92.5
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 75 NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 75 ~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
+.+..+..+..+| ..+...|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+
T Consensus 6 ~~~~~a~~~~~~g----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 67 (164)
T 3sz7_A 6 APTPESDKLKSEG----------NAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAED 67 (164)
T ss_dssp SCCHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHH
Confidence 3455678888899 7779999999999999999996 344567899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++++++. |....++.++|.++. .+|++++|+.+|++++.+.+
T Consensus 68 ~~~al~~~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 68 AELATVVD--------PKYSKAWSRLGLARF-DMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC--------CCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCC
Confidence 99999874 445678999999997 99999999999999999988
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.46 E-value=7.6e-13 Score=94.79 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=103.4
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHH
Q psy4339 74 ENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAER 153 (303)
Q Consensus 74 ~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 153 (303)
...|.....+..+| ..+...|++++|+..++++++. .|....++.++|.++...|++++|+.
T Consensus 10 ~~~~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 10 HMNPDLALMVKNKG----------NECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp CSSSCHHHHHHHHH----------HHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred CcCcccHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHH
Confidence 34455778889999 7779999999999999999985 33446788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccc
Q psy4339 154 MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYS 233 (303)
Q Consensus 154 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~ 233 (303)
++++++++. |....++.++|.++. ..|++++|+.++++++...+
T Consensus 72 ~~~~a~~~~--------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p--------------------------- 115 (133)
T 2lni_A 72 DCEECIQLE--------PTFIKGYTRKAAALE-AMKDYTKAMDVYQKALDLDS--------------------------- 115 (133)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCG---------------------------
T ss_pred HHHHHHHhC--------CCchHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCC---------------------------
Confidence 999999863 444567899999997 99999999999999998877
Q ss_pred cHHHHHHhHHHHHHhhhc
Q psy4339 234 GLEYDYRGLIHVYECLEN 251 (303)
Q Consensus 234 ~~~~~~~~la~~~~~~g~ 251 (303)
....++..++.++..+|+
T Consensus 116 ~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 116 SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp GGTHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHhcC
Confidence 334567788888877764
No 134
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=2.8e-12 Score=93.81 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC----cchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP----ENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
..+..+.++|+.+ +..|+|++|+..|++|+++...... ...|..+.++.++| .++..+|+|+
T Consensus 9 ~~a~~~~~~G~~l----~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g----------~al~~Lgr~~ 74 (159)
T 2hr2_A 9 VGAYLALSDAQRQ----LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA----------EALAGLRSFD 74 (159)
T ss_dssp HHHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHH----------HHHHHTTCHH
T ss_pred HHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHH----------HHHHHCCCHH
Confidence 3567889999888 5999999999999999999654111 11223455899999 6679999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHH----HHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHY----GNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+|+..+.+|++++.+. ++-+|....+| ++.|.++..+|++++|+.+|++++++...
T Consensus 75 eAl~~~~kAL~l~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 75 EALHSADKALHYFNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHHHHHHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999986654 34456777788 99999999999999999999999999744
No 135
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.45 E-value=3.4e-13 Score=102.25 Aligned_cols=154 Identities=10% Similarity=-0.050 Sum_probs=112.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
+-++.|+..|+++++. +|....++..+|.++ ...|++++|+..+++++.. .+ ++ .....
T Consensus 20 g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~----~~~g~~~~A~~~~~~a~~~-----~p-~~---~~~~~ 78 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDE--------LQSRGDVKLAKADCL----LETKQFELAQELLATIPLE-----YQ-DN---SYKSL 78 (176)
T ss_dssp TCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHH----HHTTCHHHHHHHHTTCCGG-----GC-CH---HHHHH
T ss_pred CCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHH----HHCCCHHHHHHHHHHhhhc-----cC-Ch---HHHHH
Confidence 3445566666665554 577788999999877 6999999999999998664 12 23 22222
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
++.+. +...+...+|+..++++++. +|....++.++|.++...|++++|+..|+++++..
T Consensus 79 ~~~~~---------~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--- 138 (176)
T 2r5s_A 79 IAKLE---------LHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVN--- 138 (176)
T ss_dssp HHHHH---------HHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHH---------HHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---
Confidence 33111 12223444688999999985 35556788999999999999999999999998753
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 166 ~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
++ +....++.++|.++. .+|+.++|+..|++++..
T Consensus 139 --p~-~~~~~a~~~l~~~~~-~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 --LG-AQDGEVKKTFMDILS-ALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --TT-TTTTHHHHHHHHHHH-HHCSSCHHHHHHHHHHHH
T ss_pred --cc-cChHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHH
Confidence 11 112457889999998 999999999999999864
No 136
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.45 E-value=6.9e-13 Score=108.72 Aligned_cols=155 Identities=12% Similarity=-0.027 Sum_probs=122.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
.+-++.|+..|+++++. +|+...++..+|.++ ...|++++|+..+++++.. +|.......
T Consensus 130 ~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~----~~~g~~~~A~~~l~~~~~~--------~p~~~~~~~ 189 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETL----IALNRSEDAEAVLXTIPLQ--------DQDTRYQGL 189 (287)
T ss_dssp TTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHH----HHTTCHHHHHHHHTTSCGG--------GCSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHH----HHCCCHHHHHHHHHhCchh--------hcchHHHHH
Confidence 34456677777777765 455668899999877 6999999999999988654 233333444
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
..+ ..+...++.++|+..+++++.. +|....++.++|.++...|++++|+..++++++..
T Consensus 190 ~~~----------~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-- 249 (287)
T 3qou_A 190 VAQ----------IELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-- 249 (287)
T ss_dssp HHH----------HHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHH----------HHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--
Confidence 444 4447788999999999999986 45666789999999999999999999999999864
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 165 VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+++ ....++.++|.++. ..|+.++|...|++++..
T Consensus 250 ---p~~-~~~~a~~~l~~~~~-~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 250 ---LTA-ADGQTRXTFQEILA-ALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ---TTG-GGGHHHHHHHHHHH-HHCTTCHHHHHHHHHHHH
T ss_pred ---ccc-ccchHHHHHHHHHH-HcCCCCcHHHHHHHHHHH
Confidence 221 12567899999998 999999999999999864
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-12 Score=93.01 Aligned_cols=124 Identities=12% Similarity=0.110 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
...|.....+..+|.++ ...|++++|+.+++++++. .|....++..+| .++...|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la----------~~~~~~~~~~ 67 (133)
T 2lni_A 10 HMNPDLALMVKNKGNEC----FQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRA----------ACYTKLLEFQ 67 (133)
T ss_dssp CSSSCHHHHHHHHHHHH----HHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHH----------HHHTTTTCHH
T ss_pred CcCcccHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHH----------HHHHHhccHH
Confidence 45567889999999877 5999999999999999875 344467888899 6679999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+.+++++++. .|....++.++|.++...|++++|+.++++++++. |....++..++.++. .
T Consensus 68 ~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~-~ 130 (133)
T 2lni_A 68 LALKDCEECIQL--------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMM-A 130 (133)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHh--------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHH-H
Confidence 999999999986 23445678999999999999999999999999863 445567889999986 7
Q ss_pred hcC
Q psy4339 188 MLE 190 (303)
Q Consensus 188 ~g~ 190 (303)
+|+
T Consensus 131 ~~~ 133 (133)
T 2lni_A 131 QYN 133 (133)
T ss_dssp HTC
T ss_pred hcC
Confidence 764
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.44 E-value=3.1e-12 Score=91.07 Aligned_cols=125 Identities=18% Similarity=0.093 Sum_probs=104.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHH
Q psy4339 28 SENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYK 107 (303)
Q Consensus 28 ~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 107 (303)
...|..+..+..+|.++ ...|++++|+.++++++.. .|....++..+| .++...|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a----------~~~~~~~~~~ 63 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQ----MKVENFEAAVHFYGKAIEL--------NPANAVYFCNRA----------AAYSKLGNYA 63 (131)
T ss_dssp -CHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHH
T ss_pred hcchhhhHHHHHHHHHH----HHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHH----------HHHHHhhchH
Confidence 35677889999999877 5999999999999999987 344467788888 6679999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+.++.+++.. .|....++..+|.++...|++++|+.++++++++. |....++..+|.++. .
T Consensus 64 ~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~-~ 126 (131)
T 2vyi_A 64 GAVQDCERAICI--------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD--------PDNETYKSNLKIAEL-K 126 (131)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhc--------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHH-H
Confidence 999999999986 23345678999999999999999999999999863 334567889999997 8
Q ss_pred hcCH
Q psy4339 188 MLEY 191 (303)
Q Consensus 188 ~g~~ 191 (303)
.|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8875
No 139
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.44 E-value=3.4e-12 Score=95.25 Aligned_cols=129 Identities=13% Similarity=0.049 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC---cc-------hhhhHHHHHHHHHHHHHHhhhhHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP---EN-------HLLLTSAHRVKALILEEIALDSNEL 100 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~~~~~~~~ 100 (303)
...+..+..+|..+ +..|+|++|+..|.+++.+...... +. .|....++.++| .+|
T Consensus 8 ~~~a~~~~~~G~~~----~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla----------~~~ 73 (162)
T 3rkv_A 8 LKSVEALRQKGNEL----FVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS----------QCY 73 (162)
T ss_dssp CHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHH----------HHH
T ss_pred HHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 45778999999888 5999999999999999998655311 11 455678889999 777
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH-HHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG-LSVGH 179 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~ 179 (303)
...|++++|+..+.+++.+ +|....++..+|.+|..+|++++|+..|++++.+. |... .+...
T Consensus 74 ~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~~ 137 (162)
T 3rkv_A 74 LNIGDLHEAEETSSEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--------PAAASVVARE 137 (162)
T ss_dssp HHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CCCHHHHHHH
Confidence 9999999999999999997 35567789999999999999999999999999874 3333 34555
Q ss_pred HHHHHHHhhcC
Q psy4339 180 LASLYNYHMLE 190 (303)
Q Consensus 180 la~~~~~~~g~ 190 (303)
++.+.. ..++
T Consensus 138 l~~~~~-~~~~ 147 (162)
T 3rkv_A 138 MKIVTE-RRAE 147 (162)
T ss_dssp HHHHHH-HHHH
T ss_pred HHHHHH-HHHH
Confidence 666654 4443
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.43 E-value=3.1e-12 Score=95.63 Aligned_cols=104 Identities=12% Similarity=0.025 Sum_probs=92.3
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.+..+..+..+|.++ ...|+|++|+.+|++++++ +|....++.++| .+|...|++++
T Consensus 6 ~~~~~a~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~----------~~~~~~g~~~~ 63 (164)
T 3sz7_A 6 APTPESDKLKSEGNAA----MARKEYSKAIDLYTQALSI--------APANPIYLSNRA----------AAYSASGQHEK 63 (164)
T ss_dssp SCCHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred hhhhhHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHH----------HHHHHccCHHH
Confidence 4567889999999888 5999999999999999988 455678899999 77799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
|+.++++++++ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 64 A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 64 AAEDAELATVV--------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999997 34456789999999999999999999999999986
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.42 E-value=5.1e-14 Score=123.63 Aligned_cols=131 Identities=13% Similarity=0.007 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
++..+..+..+|.++ ...|++++|+.+|++++++ +|....++.++| .+|..+|++++|
T Consensus 2 ~~~~a~~~~~lg~~~----~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~A 59 (477)
T 1wao_1 2 ALKRAEELKTQANDY----FKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRS----------LAYLRTECYGYA 59 (477)
T ss_dssp CHHHHTTSSSSSSST----TTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHH
T ss_pred hHhHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHH----------HHHHHhcCHHHH
Confidence 456667778888766 5999999999999999998 566678899999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--HHHh
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL--YNYH 187 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~ 187 (303)
+..+++++++ +|....++.++|.+|..+|++++|+.++++++++. |....++.+++.+ +. .
T Consensus 60 ~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~-~ 122 (477)
T 1wao_1 60 LGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIV-K 122 (477)
T ss_dssp HHHHHHHHHS--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH-H
Confidence 9999999985 45567789999999999999999999999999874 3233456677777 86 8
Q ss_pred hcCHHHHHHHHH
Q psy4339 188 MLEYHKAEKLYF 199 (303)
Q Consensus 188 ~g~~~~A~~~~~ 199 (303)
+|++++|+..++
T Consensus 123 ~g~~~~A~~~~~ 134 (477)
T 1wao_1 123 QKAFERAIAGDE 134 (477)
T ss_dssp HHHHCCC-----
T ss_pred HHHHHHHhcccc
Confidence 999999999999
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=4.7e-12 Score=91.39 Aligned_cols=103 Identities=19% Similarity=0.092 Sum_probs=90.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
+..+..+..+| ..+...|++++|+..|++++.. .|....++.++|.++..+|++++|+.+++
T Consensus 6 ~~~~~~~~~~g----------~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 6 SPSAQELKEQG----------NRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp CCCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHH----------HHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44567888889 7779999999999999999996 34446789999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+++.+. |....++.++|.++. ..|++++|+.++++++.+.|
T Consensus 68 ~al~~~--------p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 68 RALELD--------GQSVKAHFFLGQCQL-EMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhC--------chhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHCh
Confidence 999864 445678999999997 99999999999999999988
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.42 E-value=5.5e-13 Score=116.52 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=112.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc-------chhhhHHHHHHHHHHHHHHhhhhHHHHh
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE-------NHLLLTSAHRVKALILEEIALDSNELIS 102 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~~~~~ 102 (303)
.|..+..+.++|.++ +..|+|++|+..|++|+++....... ..+....++.++| .+|..
T Consensus 264 ~~~~a~~~~~~G~~~----~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla----------~~~~~ 329 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVY----FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA----------MCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 567889999999888 59999999999999999985432100 1223467888888 77799
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLAS 182 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 182 (303)
.|++++|+..|.+++.+ .|....+++++|.+|..+|++++|+.+|++++++. |....++.+++.
T Consensus 330 ~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~l~~ 393 (457)
T 1kt0_A 330 LREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------PQNKAARLQISM 393 (457)
T ss_dssp TTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------CHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 99999999999999996 34457789999999999999999999999999763 556678999999
Q ss_pred HHHHhhcCHHHHHHH-HHHHH
Q psy4339 183 LYNYHMLEYHKAEKL-YFRSI 202 (303)
Q Consensus 183 ~~~~~~g~~~~A~~~-~~~al 202 (303)
++. .+|++++|... +++++
T Consensus 394 ~~~-~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQK-KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHH-HHHHHHHHHHHHHHHC-
T ss_pred HHH-HHHHHHHHHHHHHHHHH
Confidence 998 99999888743 44433
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.40 E-value=1.7e-12 Score=105.98 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..+..+|..+ ...|+|++|+.+|++++.. +|....++.++| .+|...|++++|+..
T Consensus 3 ~a~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la----------~~~~~~~~~~~A~~~ 60 (281)
T 2c2l_A 3 SAQELKEQGNRL----FVGRKYPEAAACYGRAITR--------NPLVAVYYTNRA----------LCYLKMQQPEQALAD 60 (281)
T ss_dssp CHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHH----------HHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHH----------HHHHHhcCHHHHHHH
Confidence 356888999877 5999999999999999987 455568889999 777999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
+++++++ +|....++.++|.++..+|++++|+..+++++++...
T Consensus 61 ~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 61 CRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHTTS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999985 4555678999999999999999999999999998743
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.40 E-value=5.3e-12 Score=97.46 Aligned_cols=142 Identities=14% Similarity=0.044 Sum_probs=106.4
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcc--------hhhhHHHHHHHHHHHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN--------HLLLTSAHRVKALILEEIALDSNELI 101 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~~~~ 101 (303)
.+..+..+..+|..+ ...|+|++|+.+|.+++++........ ......++.++| .++.
T Consensus 34 ~~~~~~~~~~~g~~~----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la----------~~~~ 99 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEF----FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA----------TCYN 99 (198)
T ss_dssp HHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH----------HHHH
Confidence 455788999999877 599999999999999998743210000 000136778888 7779
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..|++++|+.++++++.+ .|....++.++|.+|..+|++++|+.+|++++++. |....++..++
T Consensus 100 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 163 (198)
T 2fbn_A 100 KNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--------PNNLDIRNSYE 163 (198)
T ss_dssp HTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHH
Confidence 999999999999999996 34456789999999999999999999999999874 44456788999
Q ss_pred HHHHHhhcCHHHHH-HHHHHHH
Q psy4339 182 SLYNYHMLEYHKAE-KLYFRSI 202 (303)
Q Consensus 182 ~~~~~~~g~~~~A~-~~~~~al 202 (303)
.++. .+++..++. ..+.+.+
T Consensus 164 ~~~~-~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 164 LCVN-KLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHH-HHHHHHC----------
T ss_pred HHHH-HHHHHHHHHHHHHHHHh
Confidence 9997 888888877 4444443
No 146
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.40 E-value=4.7e-12 Score=107.42 Aligned_cols=133 Identities=15% Similarity=0.047 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHHHHhhcHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF--------GENNVQTAKHYGNIGRLYQSMQKFDE 150 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~~~~~~ 150 (303)
.+..+..+| ..+...|++++|+..|++++++..... ....|....++.++|.+|..+|++++
T Consensus 222 ~a~~~~~~g----------~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 291 (370)
T 1ihg_A 222 ISEDLKNIG----------NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQG 291 (370)
T ss_dssp HHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 456677777 777999999999999999999765420 01356778899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcc
Q psy4339 151 AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSA 230 (303)
Q Consensus 151 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~ 230 (303)
|+.++++++++. |....+++++|.+|. .+|++++|+..|++++++.|
T Consensus 292 A~~~~~~al~~~--------p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P------------------------ 338 (370)
T 1ihg_A 292 AVDSCLEALEID--------PSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAP------------------------ 338 (370)
T ss_dssp HHHHHHHHHTTC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT------------------------
T ss_pred HHHHHHHHHHhC--------chhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCC------------------------
Confidence 999999999753 556788999999997 99999999999999999887
Q ss_pred ccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 231 SYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
....++..++.++...++++++.+
T Consensus 339 ---~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 339 ---EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568889999999999988877
No 147
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.39 E-value=6e-11 Score=104.56 Aligned_cols=126 Identities=15% Similarity=0.053 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhhhh----cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHh----hhh
Q psy4339 34 AIAEDELAYALYVNEYS----SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELIS----VQF 105 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~----~~~ 105 (303)
+.++..||.+| .. .+++++|+.+|+++.+. . ...++.++| .+|.. .++
T Consensus 75 ~~a~~~Lg~~y----~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg----------~~y~~g~g~~~~ 130 (490)
T 2xm6_A 75 TPAEYVLGLRY----MNGEGVPQDYAQAVIWYKKAALK-------G---LPQAQQNLG----------VMYHEGNGVKVD 130 (490)
T ss_dssp HHHHHHHHHHH----HHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHH----------HHHHHTSSSCCC
T ss_pred HHHHHHHHHHH----HcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHH----------HHHHcCCCCCCC
Confidence 35788888665 45 78889999999888653 1 235667778 44455 678
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
+++|+.+|+++.+. + ...++.++|.+|.. .+++++|+.+|+++++. . ...++.++|
T Consensus 131 ~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~---~~~a~~~Lg 190 (490)
T 2xm6_A 131 KAESVKWFRLAAEQ-------G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------G---NVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHH
Confidence 88888888887662 2 23567778888877 77888888888887652 1 134667777
Q ss_pred HHHHHh----hcCHHHHHHHHHHHHHh
Q psy4339 182 SLYNYH----MLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 182 ~~~~~~----~g~~~~A~~~~~~al~~ 204 (303)
.+|. . .+++++|+.+|+++.+.
T Consensus 191 ~~y~-~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 191 YMYS-RGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHH-HTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHh-cCCCCCcCHHHHHHHHHHHHHC
Confidence 7775 6 67777777777777654
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.39 E-value=9.5e-12 Score=88.74 Aligned_cols=98 Identities=15% Similarity=0.047 Sum_probs=86.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..++++++.. ++++....++..+|.++...|++++|+.++++++... ++++....++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~ 79 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDKAAGGL 79 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcccHHHH
Confidence 66689999999999999999862 4556666789999999999999999999999999864 4555567889
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+|.++. .+|++++|+..+++++...|
T Consensus 80 ~~la~~~~-~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 80 LKLGLSQY-GEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHCC
Confidence 99999997 99999999999999999888
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.39 E-value=1.3e-11 Score=87.06 Aligned_cols=100 Identities=24% Similarity=0.276 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
..++..+| .++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++
T Consensus 9 ~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLG----------NAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56778888 6679999999999999999986 23345678899999999999999999999998
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
... |....++..+|.++. ..|++++|+.++++++.+.|
T Consensus 71 ~~~--------~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 71 ELD--------PNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HhC--------CccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCC
Confidence 763 333567889999997 99999999999999998877
No 150
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.39 E-value=5.6e-11 Score=97.57 Aligned_cols=211 Identities=8% Similarity=-0.039 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG--RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 9 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
+.|..++.+++.+ +|+...+++..+.++ ...| ++++++.++.+++.. +|....+++..
T Consensus 50 ~~aL~~t~~~L~~--------nP~~~taWn~R~~~L----~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R 109 (306)
T 3dra_A 50 ERALHITELGINE--------LASHYTIWIYRFNIL----KNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHH
T ss_pred HHHHHHHHHHHHH--------CcHHHHHHHHHHHHH----HHcccccHHHHHHHHHHHHHH--------CcccHHHHHHH
Confidence 3455555555555 577778999999888 5777 999999999999987 56666778888
Q ss_pred HHHHHHHhhhhHHHHhh---hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH--HHHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELISV---QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD--EAERMQLKAIAI 161 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~ 161 (303)
+.++..+. ... +++++++..+.++++. +|....++...+.+....|.++ ++++++.++++.
T Consensus 110 ~~iL~~~~------~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 110 QLIIGQIM------ELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HHHHHHHH------HHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 86652111 333 6899999999999985 5666788999999999999998 999999999975
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhcC------HHHHHHHHHHHHHhhhhhhh----hhhhhhhhhhhHHHH-----h
Q psy4339 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLE------YHKAEKLYFRSIEINDNLKL----FSASYSGLEYHYRDL-----K 226 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~la~~~~~~~g~------~~~A~~~~~~al~~~~~~~~----~~~~~~~l~~~~~a~-----~ 226 (303)
. |....++++.+.+.. ..|+ ++++++++++++.+.|++.. ....+..++....++ +
T Consensus 176 d--------~~N~sAW~~R~~ll~-~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 176 D--------LKNNSAWSHRFFLLF-SKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp C--------TTCHHHHHHHHHHHH-SSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred C--------CCCHHHHHHHHHHHH-hccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3 556678999999997 8888 99999999999998885431 122222222211111 1
Q ss_pred h--hccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 227 L--FSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 227 ~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
. .+...+....++..+|.++.+.|+.++|+++++.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 11123566778999999999999999999977665
No 151
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=2e-11 Score=108.69 Aligned_cols=206 Identities=12% Similarity=-0.003 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhh-------cccHH-------HHHHHHHHHHHHHHhhCCcch
Q psy4339 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYS-------SGRFT-------ESRRHAEKAIQTFKNLLPENH 76 (303)
Q Consensus 11 a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~-------~g~~~-------~A~~~~~~al~~~~~~~~~~~ 76 (303)
+...|++|+.. .|....++..+|..+ .. .|+++ +|...|++|++. ..
T Consensus 257 a~~~y~~al~~--------~p~~~~~w~~~~~~~----~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~ 317 (530)
T 2ooe_A 257 VMFAYEQCLLV--------LGHHPDIWYEAAQYL----EQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LL 317 (530)
T ss_dssp HHHHHHHHHHH--------HTTCHHHHHHHHHHH----HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TC
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hC
Confidence 34455555544 345567888888655 33 79987 777777777651 13
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
|....++..+| ..+...|++++|...|++++++ .++++ ..++.++|.++...|++++|...|+
T Consensus 318 p~~~~l~~~~~----------~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 318 KKNMLLYFAYA----------DYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp SSCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHH----------HHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45567777788 6668899999999999999984 22222 3478899999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHhhhhhhhhhhh----hhhhhhhHHH-------
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASL-YNYHMLEYHKAEKLYFRSIEINDNLKLFSAS----YSGLEYHYRD------- 224 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~l~~~~~a------- 224 (303)
+|++.. |.....+...+.+ +. ..|++++|..+|+++++..|+++.+-.. +..++...+|
T Consensus 381 ~Al~~~--------~~~~~~~~~~a~~~~~-~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 381 KAREDA--------RTRHHVYVTAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHTCT--------TCCTHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHhcc--------CCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 998642 2222334444544 43 6899999999999999999876643322 2233333333
Q ss_pred Hhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 LKLFSASYSG-LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+.. .+.+|. ....+...+......|+.+.+..+.+.+
T Consensus 452 l~~-~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 452 LTS-GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHS-CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred Hhc-cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222 122332 3456667777778889888888855443
No 152
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.38 E-value=4.4e-11 Score=85.03 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
.+..+..+| ..+...|++++|+.++++++.. .|....++.++|.++...|++++|+.+++++
T Consensus 3 ~~~~~~~l~----------~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 3 QALKEKELG----------NDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 356677788 6779999999999999999986 2334567899999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+.... +.+.+....++.++|.++. ..|++++|+.++++++.+.+
T Consensus 65 ~~~~~~~-~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 65 IEVGREN-REDYRQIAKAYARIGNSYF-KEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred Hhhcccc-chhHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCC
Confidence 9987542 2334444788999999997 99999999999999998765
No 153
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.37 E-value=1.4e-10 Score=102.15 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=134.7
Q ss_pred hHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 7 LLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 7 ~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
-.+.|..+|+++.+. ++ +.++..+|.+++.-....+++++|+.+|+++++. . ...++.++
T Consensus 202 ~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~l 261 (490)
T 2xm6_A 202 NDAISAQWYRKSATS-------GD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-------G---NSIAQFRL 261 (490)
T ss_dssp CHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-------T---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHH
Confidence 345566666666542 33 3578888866630000288999999999998753 1 23567778
Q ss_pred HHHHHHHhhhhHHHHh----hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-----hcHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELIS----VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-----QKFDEAERMQLK 157 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~ 157 (303)
| .+|.. .+++++|+.+|+++.+. ++ ..++.++|.+|... +++++|+.+|++
T Consensus 262 g----------~~y~~g~~~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 262 G----------YILEQGLAGAKEPLKALEWYRKSAEQ-------GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp H----------HHHHHTTTSSCCHHHHHHHHHHHHTT-------TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred H----------HHHHCCCCCCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 8 44455 78899999999998752 22 34677889988887 889999999998
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHhhhhh--hhhhhhhhh----hhhhHHHHhhh
Q psy4339 158 AIAIKEKVLGKDDYEVGLSVGHLASLYNYHML---EYHKAEKLYFRSIEINDNL--KLFSASYSG----LEYHYRDLKLF 228 (303)
Q Consensus 158 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g---~~~~A~~~~~~al~~~~~~--~~~~~~~~~----l~~~~~a~~~~ 228 (303)
+++. .+ ..++.++|.+|. ..| ++++|+.+|+++++..... -.++..+.. .....+|+..+
T Consensus 322 a~~~-------~~---~~a~~~lg~~y~-~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 322 SAEQ-------GD---ATAQANLGAIYF-RLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHT-------TC---HHHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHhc-------CC---HHHHHHHHHHHH-hCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8763 12 246788898886 655 7889999999988763211 123333333 23333444222
Q ss_pred ccc-cccHHHHHHhHHHHHHh----hhcHHHHHHHHHHH
Q psy4339 229 SAS-YSGLEYDYRGLIHVYEC----LENFEKMTEFTNKL 262 (303)
Q Consensus 229 ~~~-~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 262 (303)
... ......++.+||.+|.. .+++++|..+++.+
T Consensus 391 ~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 391 RKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 110 01235678999999998 89999999955444
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.37 E-value=1.3e-11 Score=88.99 Aligned_cols=104 Identities=20% Similarity=0.157 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
|..+..+..+|.++ ...|+|++|+.+|++++.. +|....++.++| .++...|++++|+
T Consensus 6 ~~~~~~~~~~g~~~----~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~----------~~~~~~~~~~~A~ 63 (137)
T 3q49_B 6 SPSAQELKEQGNRL----FVGRKYPEAAACYGRAITR--------NPLVAVYYTNRA----------LCYLKMQQPEQAL 63 (137)
T ss_dssp CCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHH----HHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHH----------HHHHHhcCHHHHH
Confidence 44578899999877 5999999999999999987 455567889999 7779999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 111 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
..+++++.+ .|....++.++|.++..+|++++|+.++++++++...
T Consensus 64 ~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 64 ADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999996 3445668999999999999999999999999998754
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.37 E-value=3.4e-12 Score=102.64 Aligned_cols=193 Identities=9% Similarity=-0.114 Sum_probs=144.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH-------HHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchh-
Q psy4339 6 ILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDEL-------AYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL- 77 (303)
Q Consensus 6 ~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 77 (303)
.....|.+.|.+++++ +|..++++..+ +.++ ...+++.+++..+++++.+....++....
T Consensus 20 ~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L----~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 20 MSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTL----FRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHH----HHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred CCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHH----HHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 4466777888888777 67888899988 7777 58888899999999988764333221111
Q ss_pred ----------h--hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh
Q psy4339 78 ----------L--LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM 145 (303)
Q Consensus 78 ----------~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 145 (303)
. ...+...++ ..+...|+|++|.+.|...+.. .|... ..+.+|.++...
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA----------~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~ 148 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFA----------ACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAA 148 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHH----------HHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHT
T ss_pred CCcccccccccCCHhHHHHHHH----------HHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHc
Confidence 0 123333445 6668999999999999876652 34444 788999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHH
Q psy4339 146 QKFDEAERMQLKAIAIKEKVLGKDDYE-VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRD 224 (303)
Q Consensus 146 ~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a 224 (303)
++|++|+.+++++... + +|. ...+++++|.++. .+|++++|+.+|++++...
T Consensus 149 ~r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~------------------- 201 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSP------------------- 201 (282)
T ss_dssp TCHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTST-------------------
T ss_pred CCHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCC-------------------
Confidence 9999999999866432 1 233 3458999999998 9999999999999987321
Q ss_pred Hhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 225 LKLFSASYSG-LEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 225 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..|. ...+.+.+|.++..+|+.++|...++.+
T Consensus 202 ------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 202 ------AGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp ------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1133 6678999999999999999999966554
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.36 E-value=5.7e-12 Score=89.23 Aligned_cols=92 Identities=11% Similarity=-0.074 Sum_probs=80.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++++. |....++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~ 88 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVH 88 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHH
Confidence 6668999999999999999996 45567789999999999999999999999999874 4455688
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++|.++. ..|++++|+..+++++++.|
T Consensus 89 ~~la~~~~-~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 89 AALAVSHT-NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 99999997 99999999999999998877
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.35 E-value=2.9e-11 Score=85.20 Aligned_cols=118 Identities=24% Similarity=0.190 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+.++..+|.++ ...|++++|+.++++++.. .|....++..+| .++...|++++|+.+
T Consensus 8 ~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la----------~~~~~~~~~~~A~~~ 65 (125)
T 1na0_A 8 SAEAWYNLGNAY----YKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLG----------NAYYKQGDYDEAIEY 65 (125)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHH----------HHHHHhCCHHHHHHH
Confidence 467889999877 5899999999999999886 234456778888 667999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
+++++.. .|....++..+|.++...|++++|+.+++++++.. |....++..+|.++. ..|
T Consensus 66 ~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~-~~g 125 (125)
T 1na0_A 66 YQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQ-KQG 125 (125)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HHC
T ss_pred HHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-hcc
Confidence 9999985 23335678899999999999999999999998763 344456788888885 554
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.34 E-value=6.2e-13 Score=116.72 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=98.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|++++|+..|++++++ +|....++.++|.+|..+|++++|+.++++++++. |....++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~ 77 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------KKYIKGY 77 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------TTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHH
Confidence 6778999999999999999996 35557889999999999999999999999999863 5566789
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHH--HHhhhcHHHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHV--YECLENFEKM 255 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A 255 (303)
.++|.+|. .+|++++|+.++++++++.+ ....++..++.+ +..+|++++|
T Consensus 78 ~~lg~~~~-~~g~~~eA~~~~~~al~~~p---------------------------~~~~~~~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 78 YRRAASNM-ALGKFRAALRDYETVVKVKP---------------------------HDKDAKMKYQECNKIVKQKAFERA 129 (477)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHST---------------------------TCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 99999999999999999877 222345667766 8889999999
Q ss_pred HHHHH
Q psy4339 256 TEFTN 260 (303)
Q Consensus 256 ~~~~~ 260 (303)
++.++
T Consensus 130 ~~~~~ 134 (477)
T 1wao_1 130 IAGDE 134 (477)
T ss_dssp -----
T ss_pred hcccc
Confidence 99654
No 159
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.34 E-value=4e-12 Score=96.18 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=96.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy4339 100 LISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179 (303)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 179 (303)
+...|++++|+..+++++.. .|....++..+|.+|...|++++|+.+|++++.+. |....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 35789999999999999985 23445688999999999999999999999999875 333567889
Q ss_pred HHHH-HHHhhcCH--HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHH
Q psy4339 180 LASL-YNYHMLEY--HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMT 256 (303)
Q Consensus 180 la~~-~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (303)
+|.+ +. ..|++ ++|+.++++++...| ....++..+|.++...|++++|.
T Consensus 84 la~~l~~-~~~~~~~~~A~~~~~~al~~~p---------------------------~~~~~~~~la~~~~~~g~~~~A~ 135 (177)
T 2e2e_A 84 LATVLYY-QASQHMTAQTRAMIDKALALDS---------------------------NEITALMLLASDAFMQANYAQAI 135 (177)
T ss_dssp HHHHHHH-HTTTCCCHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH-hcCCcchHHHHHHHHHHHHhCC---------------------------CcHHHHHHHHHHHHHcccHHHHH
Confidence 9999 86 89999 999999999998877 34567899999999999999999
Q ss_pred HHHHHH
Q psy4339 257 EFTNKL 262 (303)
Q Consensus 257 ~~~~~~ 262 (303)
.+++.+
T Consensus 136 ~~~~~a 141 (177)
T 2e2e_A 136 ELWQKV 141 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 965444
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.34 E-value=4.5e-11 Score=84.96 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
..+.++..+|.++ ...|++++|+.++++++.. .|....++.++| .++...|++++|+.
T Consensus 2 ~~~~~~~~l~~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la----------~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 2 KQALKEKELGNDA----YKKKDFDTALKHYDKAKEL--------DPTNMTYITNQA----------AVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHH----------HHHHHhccHHHHHH
Confidence 4677899999877 5999999999999999987 344457788889 67799999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q psy4339 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (303)
++++++...... +.+.+....++.++|.++...|++++|+.++++++++. + ++ .....++.+..
T Consensus 60 ~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~-~~---~~~~~l~~~~~ 123 (131)
T 1elr_A 60 LCEKAIEVGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-----R-TP---DVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----C-CH---HHHHHHHHHHH
T ss_pred HHHHHHhhcccc-chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----C-CH---HHHHHHHHHHH
Confidence 999999986542 23344447889999999999999999999999999852 2 23 34555666654
No 161
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.34 E-value=2.8e-11 Score=102.68 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhC--------CcchhhhHHHHHHHHHHHHHHhhhhHHHHhh
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLL--------PENHLLLTSAHRVKALILEEIALDSNELISV 103 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~ 103 (303)
..+..+..+|..+ ...|+|++|+..|++++++..... ...+|....++.++| .+|...
T Consensus 221 ~~a~~~~~~g~~~----~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla----------~~~~~~ 286 (370)
T 1ihg_A 221 LISEDLKNIGNTF----FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG----------ACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHH----------HHHHHT
T ss_pred HHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHH----------HHHHhc
Confidence 4567889999877 599999999999999999765420 013566778899999 777999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL 183 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 183 (303)
|++++|+.++++++++ .|....++.++|.+|..+|++++|+..|++++++. |....++..++.+
T Consensus 287 g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKV 350 (370)
T ss_dssp TCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 9999999999999985 35567789999999999999999999999999874 3445677889999
Q ss_pred HHHhhcCHHHHHHH
Q psy4339 184 YNYHMLEYHKAEKL 197 (303)
Q Consensus 184 ~~~~~g~~~~A~~~ 197 (303)
+. .+++++++...
T Consensus 351 ~~-~~~~~~~a~k~ 363 (370)
T 1ihg_A 351 KQ-KIKAQKDKEKA 363 (370)
T ss_dssp HH-HHHHHHHHHHC
T ss_pred HH-HHHHHHHHHHH
Confidence 97 88888877643
No 162
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=1.8e-11 Score=95.62 Aligned_cols=141 Identities=16% Similarity=0.082 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
.+|+.+|+++.+. ..+.++.++| .+|...+++++|+.+|+++.+. + ...+
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg----------~~~~~~~~~~~A~~~~~~a~~~-------g---~~~a 52 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLA----------DTWVSSGDYQKAEYWAQKAAAQ-------G---DGDA 52 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHT-------T---CHHH
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHH----------HHHhcCCCHHHHHHHHHHHHHc-------C---CHHH
Confidence 3577788887653 2347788899 6668899999999999999873 2 2467
Q ss_pred HHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHhhh
Q psy4339 135 YGNIGRLYQSMQ----KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 135 ~~~la~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al~~~~ 206 (303)
+.+||.+|.. + ++++|+.+|+++.+ +....+++++|.+|. . .+++++|+.+|+++.+..+
T Consensus 53 ~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----------~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 53 LALLAQLKIR-NPQQADYPQARQLAEKAVE----------AGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHTTS-STTSCCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCC
Confidence 8899999998 7 89999999999965 223467899999996 7 8899999999999986544
Q ss_pred hhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHh----hhcHHHHHHHHHHH
Q psy4339 207 NLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYEC----LENFEKMTEFTNKL 262 (303)
Q Consensus 207 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 262 (303)
....+.++++||.+|.. .+++++|+.+++..
T Consensus 121 -------------------------~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 121 -------------------------SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp -------------------------SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred -------------------------CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 11346789999999999 88999999966544
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.32 E-value=8e-11 Score=83.85 Aligned_cols=118 Identities=10% Similarity=0.057 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..+..+|.++ ...|++++|+..|+++++. .++++....++..+| .++...|++++|+.+++
T Consensus 3 ~~~~~~a~~~----~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg----------~~~~~~~~~~~A~~~~~ 63 (129)
T 2xev_A 3 RTAYNVAFDA----LKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLG----------ESYYATRNFQLAEAQFR 63 (129)
T ss_dssp CCHHHHHHHH----HHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHH----------HHHHHhccHHHHHHHHH
Confidence 3567788777 5999999999999999886 244555567888899 77799999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
+++... ++++....++..+|.++..+|++++|+.++++++... ++++....+...+.
T Consensus 64 ~~~~~~-----p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 64 DLVSRY-----PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHH
T ss_pred HHHHHC-----CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHH
Confidence 999863 4455557789999999999999999999999999864 44555444444433
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.32 E-value=5e-11 Score=83.05 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
+..+..+| ..+...|++++|+..+++++.. .|....++.++|.++...|++++|+.++++++
T Consensus 4 ~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 4 VNELKEKG----------NKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 35666777 6678999999999999999986 23345678999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.. |....++.++|.++. ..|++++|..++++++...|
T Consensus 66 ~~~--------~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 66 DLK--------PDWGKGYSRKAAALE-FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCT
T ss_pred HhC--------cccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCC
Confidence 863 344567899999997 99999999999999998877
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.32 E-value=5.7e-12 Score=105.71 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhh--------------hHHHHHHHHHHHHHHhhh
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLL--------------LTSAHRVKALILEEIALD 96 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~~~~ 96 (303)
+..+..+..+|..+ ...|+|++|+.+|++++.+... ++. ...++.++|
T Consensus 176 ~~~a~~~~~~g~~~----~~~g~~~~A~~~y~~Al~~~p~-----~~~~~~~~~~~~~~~~l~~~~~~nla--------- 237 (338)
T 2if4_A 176 IGAADRRKMDGNSL----FKEEKLEEAMQQYEMAIAYMGD-----DFMFQLYGKYQDMALAVKNPCHLNIA--------- 237 (338)
T ss_dssp HHHHHHHHHHHHHT----CSSSCCHHHHHHHHHHHHHSCH-----HHHHTCCHHHHHHHHHHHTHHHHHHH---------
T ss_pred HHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHhcc-----chhhhhcccHHHHHHHHHHHHHHHHH---------
Confidence 56778899999877 5999999999999999987322 110 113677777
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
.+|...|++++|+.++++++++ +|....+++++|.+|..+|++++|+.+|++++++. |....+
T Consensus 238 -~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a 300 (338)
T 2if4_A 238 -ACLIKLKRYDEAIGHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAI 300 (338)
T ss_dssp -HHHHTTTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred -HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHH
Confidence 6668888888888888888885 34456678888888888888888888888888764 444556
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+..++.+.....+..+++...|.+++...|
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 677777743145667788888888887766
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.31 E-value=7.6e-12 Score=87.96 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=77.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..|++++|+.+|+++++. +.++|....++.++|.+|..+|++++|+.++++++++. |....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHH
Confidence 468999999999999984 22367888999999999999999999999999999874 44467889999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 182 SLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
.++. ..|++++|+.++++++...|++
T Consensus 69 ~~~~-~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 69 MVLY-NLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHH-HcCCHHHHHHHHHHHHHhCCCc
Confidence 9997 9999999999999999988833
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.31 E-value=2.6e-11 Score=98.96 Aligned_cols=103 Identities=19% Similarity=0.120 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
+..+..+| ..+...|++++|+..|++++.. .|....++.++|.+|..+|++++|+..+++++
T Consensus 4 a~~~~~~g----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 65 (281)
T 2c2l_A 4 AQELKEQG----------NRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65 (281)
T ss_dssp HHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46677788 6779999999999999999996 34456788999999999999999999999998
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
++. |....+++++|.++. .+|++++|+..+++++.+.|+++
T Consensus 66 ~~~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 66 ELD--------GQSVKAHFFLGQCQL-EMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp TSC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HhC--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccch
Confidence 752 555678999999997 99999999999999999998654
No 168
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=2.7e-10 Score=101.38 Aligned_cols=155 Identities=9% Similarity=-0.044 Sum_probs=114.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhh
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALD 96 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 96 (303)
+|.+++++.+..-.|....++..+|..+ ...|++++|...|++++++ .+.++ ..++...|
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~----~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~--------- 363 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYE----ESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYM--------- 363 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHH---------
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHH----HhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHH---------
Confidence 5556666555322456677888899666 6899999999999999985 22222 24667777
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRL-YQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 97 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
..+.+.|++++|...|++|++.. +. ....+...|.+ +...|++++|..+|+++++.. |....
T Consensus 364 -~~~~~~~~~~~A~~~~~~Al~~~-----~~---~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--------p~~~~ 426 (530)
T 2ooe_A 364 -KFARRAEGIKSGRMIFKKAREDA-----RT---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPE 426 (530)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCT-----TC---CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------TTCHH
T ss_pred -HHHHHhcCHHHHHHHHHHHHhcc-----CC---chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------CCCHH
Confidence 55588999999999999998741 12 22333344443 446899999999999999875 33456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
++..++.++. ..|+.++|..+|++++...+..|
T Consensus 427 ~~~~~~~~~~-~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 427 YVLAYIDYLS-HLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHT-TTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHHHHHHHHH-hCCCHhhHHHHHHHHHhccCCCH
Confidence 7889999997 99999999999999998765433
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.4e-11 Score=87.19 Aligned_cols=107 Identities=18% Similarity=0.057 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
.+..+..+..+| ..+...|++++|+.+|+++++. .++++....++.++|.++...|++++|+.++
T Consensus 24 ~~~~~~~~~~~a----------~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 88 (148)
T 2dba_A 24 GASSVEQLRKEG----------NELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEA 88 (148)
T ss_dssp TCCCHHHHHHHH----------HHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHH----------HHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 345677888888 7779999999999999999985 2344445788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 156 LKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 156 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++++.+. |....++.++|.++. ..|++++|+.++++++.+.+
T Consensus 89 ~~~~~~~--------~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 89 SKAIEKD--------GGDVKALYRRSQALE-KLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHT--------SCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHhhC--------ccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC
Confidence 9999863 334677899999997 99999999999999999877
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.29 E-value=5.3e-11 Score=86.85 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=78.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH----------HHHHHHHHHHHHHHHHhcCCCc
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF----------DEAERMQLKAIAIKEKVLGKDD 170 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~ 170 (303)
.+.+.|++|+..+++++++ .|....++.++|.++..++++ ++|+..|++|+++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------- 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------
Confidence 5778999999999999996 466678899999999999876 59999999999874
Q ss_pred hHHHHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHhhh
Q psy4339 171 YEVGLSVGHLASLYNYHML-----------EYHKAEKLYFRSIEIND 206 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g-----------~~~~A~~~~~~al~~~~ 206 (303)
|....+++++|.+|. .+| ++++|+.+|++|+++.|
T Consensus 77 P~~~~A~~~LG~ay~-~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYT-SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp TTCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCcHHHHHHHHHHHH-HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 667788999999997 885 89999999999999988
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.27 E-value=6.3e-11 Score=83.79 Aligned_cols=98 Identities=10% Similarity=-0.073 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
..+..+|..+ ...|++++|+..++++++. +|....++..+| .++...|++++|+..++
T Consensus 18 ~~~~~~g~~~----~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg----------~~~~~~g~~~~A~~~~~ 75 (121)
T 1hxi_A 18 ENPMEEGLSM----LKLANLAEAALAFEAVCQK--------EPEREEAWRSLG----------LTQAENEKDGLAIIALN 75 (121)
T ss_dssp SCHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHH----HHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHH----------HHHHHcCCHHHHHHHHH
Confidence 3567888777 5999999999999999987 566678889999 66699999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+++++ .|....++.++|.++...|++++|+..+++++++.
T Consensus 76 ~al~l--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 76 HARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99997 34456688999999999999999999999998764
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.27 E-value=1.5e-10 Score=80.55 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
.+..+..+|.++ ...|++++|+.++++++.. .|....++..+| .++...|++++|+..
T Consensus 3 ~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a----------~~~~~~~~~~~A~~~ 60 (118)
T 1elw_A 3 QVNELKEKGNKA----LSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRS----------AAYAKKGDYQKAYED 60 (118)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHH----HHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHH----------HHHHhhccHHHHHHH
Confidence 456788999877 5999999999999999987 344457788889 667999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLY 184 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 184 (303)
+++++.. .|....++.++|.++...|++++|..+++++++.. |....++..++.+.
T Consensus 61 ~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 61 GCKTVDL--------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE--------ANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHH
T ss_pred HHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHhh
Confidence 9999986 23445678999999999999999999999998653 33344566666554
No 173
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.23 E-value=4.3e-10 Score=98.06 Aligned_cols=180 Identities=13% Similarity=0.088 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhhhhhcc---cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSG---RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
++.+||.++ ...| ++++|+.+|+++.+. .+..+..++++|.+|. ......+++++|+.+
T Consensus 178 a~~~Lg~~~----~~~g~~~~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~------~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 178 CYVELATVY----QKKQQPEQQAELLKQMEAGVSR--------GTVTAQRVDSVARVLG------DATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHT------CGGGSSCCHHHHHHH
T ss_pred HHHHHHHHH----HHcCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh------CCCCCCCCHHHHHHH
Confidence 889999777 4789 999999999999875 3344566678884441 001122699999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHH-H--HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRL-Y--QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
|+++. +....++.++|.+ + ...+++++|+.+|+++.+. ....+++++|.+|. .|
T Consensus 240 ~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~--~G 296 (452)
T 3e4b_A 240 LEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY--EG 296 (452)
T ss_dssp HHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH--HC
T ss_pred HHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH--cC
Confidence 99976 1234568899998 4 5689999999999998852 23467899999984 66
Q ss_pred -----CHHHHHHHHHHHHHhhhhhhhhhhhhhhhh-----------hhHHHHhhhccc-cccHHHHHHhHHHHHHh----
Q psy4339 190 -----EYHKAEKLYFRSIEINDNLKLFSASYSGLE-----------YHYRDLKLFSAS-YSGLEYDYRGLIHVYEC---- 248 (303)
Q Consensus 190 -----~~~~A~~~~~~al~~~~~~~~~~~~~~~l~-----------~~~~a~~~~~~~-~~~~~~~~~~la~~~~~---- 248 (303)
++++|+.+|+++. +.++ .++++|+ ...+|+..+... ......+.++||.+|..
T Consensus 297 ~g~~~d~~~A~~~~~~Aa---~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV---GREV---AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT---TTCH---HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTB
T ss_pred CCCCCCHHHHHHHHHHHh---CCCH---HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCC
Confidence 9999999999998 4222 2333332 233444222111 11234568899999985
Q ss_pred hhcHHHHHHHHHHH
Q psy4339 249 LENFEKMTEFTNKL 262 (303)
Q Consensus 249 ~g~~~~A~~~~~~~ 262 (303)
.+++.+|..+++..
T Consensus 371 ~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 371 KPDPLNAYVFSQLA 384 (452)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 56899999966555
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9e-11 Score=85.48 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Q psy4339 30 NLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEA 109 (303)
Q Consensus 30 ~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A 109 (303)
+|..+..+..+|..+ ...|++++|+.+|+++++. .++++....++.++| .++...|++++|
T Consensus 24 ~~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a----------~~~~~~~~~~~A 84 (148)
T 2dba_A 24 GASSVEQLRKEGNEL----FKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRA----------ACHLKLEDYDKA 84 (148)
T ss_dssp TCCCHHHHHHHHHHH----HTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHH----------HHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHH----------HHHHHHccHHHH
Confidence 345678899999877 5999999999999999875 344444578888999 777999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+.++++++.. .|....++.++|.++..+|++++|+.++++++++.
T Consensus 85 ~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 85 ETEASKAIEK--------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHH--------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhh--------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999986 23336678899999999999999999999999864
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.22 E-value=9.7e-11 Score=82.21 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=74.5
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
.+|++++|+.+|++++++ +.++|....++.++| .+|...|++++|+.+++++++. .|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg----------~~~~~~~~~~~A~~~~~~al~~--------~p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLG----------STFRTLGEYRKAEAVLANGVKQ--------FP 58 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 478999999999999875 233677889999999 7779999999999999999996 34
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
....++.++|.++..+|++++|+.++++++...
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 446788999999999999999999999999875
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.21 E-value=3e-11 Score=101.31 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhC-CC--------cHHHHHHHHHHHHHHHHhhc
Q psy4339 77 LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFG-EN--------NVQTAKHYGNIGRLYQSMQK 147 (303)
Q Consensus 77 ~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~--------~~~~~~~~~~la~~~~~~~~ 147 (303)
+..+..+..+| ..+...|++++|+..|++++.+...... .. ......++.++|.+|..+|+
T Consensus 176 ~~~a~~~~~~g----------~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 176 IGAADRRKMDG----------NSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHHH----------HHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566777788 7779999999999999999987422100 00 00011488999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhh
Q psy4339 148 FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKL 227 (303)
Q Consensus 148 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~ 227 (303)
+++|+.++++++++. |....+++++|.+|. .+|++++|+.+|++++.+.|
T Consensus 246 ~~~A~~~~~~al~~~--------p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p--------------------- 295 (338)
T 2if4_A 246 YDEAIGHCNIVLTEE--------EKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAP--------------------- 295 (338)
T ss_dssp CHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCC---------------------
Confidence 999999999999863 555678999999997 99999999999999998877
Q ss_pred hccccccHHHHHHhHHHHHH-hhhcHHHHHHHH
Q psy4339 228 FSASYSGLEYDYRGLIHVYE-CLENFEKMTEFT 259 (303)
Q Consensus 228 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~ 259 (303)
....++..++.+.. ..+..+++...+
T Consensus 296 ------~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 296 ------DDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp ---------------------------------
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777744 345555666544
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.19 E-value=2.1e-11 Score=84.23 Aligned_cols=102 Identities=15% Similarity=0.036 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
..++..+| .++...|++++|+.+++++++.. |....++.++|.++...|++++|+.++++++
T Consensus 6 ~~~~~~~~----------~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 6 PEEYYLEG----------VLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp TTGGGGHH----------HHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556677 66699999999999999999862 3345678899999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHhhh
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHM-LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~-g~~~~A~~~~~~al~~~~ 206 (303)
+.. +. .....++..+|.++. .. |++++|+.++++++...+
T Consensus 68 ~~~-----~~-~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 68 NVI-----ED-EYNKDVWAAKADALR-YIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTS-----CC-TTCHHHHHHHHHHHT-TCSSCSHHHHHHHHHHGGGCC
T ss_pred HhC-----cc-cchHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhccc
Confidence 763 22 114567899999997 99 999999999999998766
No 178
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.16 E-value=2.2e-10 Score=92.12 Aligned_cols=144 Identities=13% Similarity=-0.055 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q psy4339 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN 115 (303)
Q Consensus 36 ~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 115 (303)
+...++.++ ...|+|++|...|...+. ..|... ..+.+| .++...+++++|+..+++
T Consensus 104 l~LayA~~L----~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a----------~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 104 ITMGFAACE----AAQGNYADAMEALEAAPV--------AGSEHL-VAWMKA----------VVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp HHHHHHHHH----HHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHH----------HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHH----HHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHH----------HHHHHcCCHHHHHHHHHH
Confidence 444556555 689999999999987554 245544 778888 666999999999999986
Q ss_pred HHHHHHHhhCCCcHH-HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHhhcCHHH
Q psy4339 116 ALVLSLKHFGENNVQ-TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE-VGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 116 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~g~~~~ 193 (303)
+... .++. ...++.++|.++..+|++++|+.+|++++. ++..|. ...+.+++|.++. .+|+.++
T Consensus 161 a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~-~lGr~de 226 (282)
T 4f3v_A 161 AGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARR-SQGNESA 226 (282)
T ss_dssp GGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHH-HHTCHHH
T ss_pred hhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHH-HcCCHHH
Confidence 5442 2333 345889999999999999999999999873 233244 6778999999998 9999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh
Q psy4339 194 AEKLYFRSIEINDNLKLFSASYSG 217 (303)
Q Consensus 194 A~~~~~~al~~~~~~~~~~~~~~~ 217 (303)
|...|++++...|+ +.....+.+
T Consensus 227 A~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 227 AVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999885 444444433
No 179
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=1.9e-09 Score=87.79 Aligned_cols=186 Identities=11% Similarity=-0.079 Sum_probs=121.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhh
Q psy4339 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDS 97 (303)
Q Consensus 18 al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 97 (303)
++..+++......+. ..++..+|.++ ...|++++|+.++.+++.. ++ .+....++..++
T Consensus 85 a~~~l~~l~~~~~~~-~~~~~~la~i~----~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~v---------- 143 (310)
T 3mv2_B 85 NIEELENLLKDKQNS-PYELYLLATAQ----AILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAI---------- 143 (310)
T ss_dssp CCHHHHHTTTTSCCC-HHHHHHHHHHH----HHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHH----------
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHH----HHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHH----------
Confidence 344455544322222 23446888777 5899999999999998653 11 134556666667
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc-HHHHHHHHHH--HHHHHHhh--cHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENN-VQTAKHYGNI--GRLYQSMQ--KFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
.++...|+.+.|.+.+++..+.. ++. ...-.+..++ |++....| ++.+|...|+++.+. .|.
T Consensus 144 qi~L~~~r~d~A~k~l~~~~~~~-----~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~p~ 210 (310)
T 3mv2_B 144 EVALLNNNVSTASTIFDNYTNAI-----EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------FPT 210 (310)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------SCS
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-----ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------CCC
Confidence 66799999999999999987751 100 0012233444 44566667 999999999996532 232
Q ss_pred --HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccc--cccHHHHHHhHHHHHHh
Q psy4339 173 --VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSAS--YSGLEYDYRGLIHVYEC 248 (303)
Q Consensus 173 --~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~--~~~~~~~~~~la~~~~~ 248 (303)
....+.+ ++. .+|++++|...++..++..| +.-.++ .|..+.++.+++.+...
T Consensus 211 ~~~~~lLln---~~~-~~g~~~eAe~~L~~l~~~~p-------------------~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 211 WKTQLGLLN---LHL-QQRNIAEAQGIVELLLSDYY-------------------SVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp HHHHHHHHH---HHH-HHTCHHHHHHHHHHHHSHHH-------------------HTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHH---HHH-HcCCHHHHHHHHHHHHHhcc-------------------cccccccCCCCCHHHHHHHHHHHHH
Confidence 2233344 787 99999999999998887765 210110 34566778888888888
Q ss_pred hhcHHHHHHHHHHH
Q psy4339 249 LENFEKMTEFTNKL 262 (303)
Q Consensus 249 ~g~~~~A~~~~~~~ 262 (303)
.|+ +|.++.+.+
T Consensus 268 lgk--~a~~l~~qL 279 (310)
T 3mv2_B 268 QGL--DTEDLTNQL 279 (310)
T ss_dssp TTC--TTHHHHHHH
T ss_pred hCh--HHHHHHHHH
Confidence 897 777776655
No 180
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.15 E-value=3.1e-09 Score=101.14 Aligned_cols=183 Identities=16% Similarity=0.058 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELL 112 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~ 112 (303)
...+|..+|.++ ...|++++|++.|.+| ++ ...+..+| .++...|++++|+++
T Consensus 1104 ~p~vWsqLAKAq----l~~G~~kEAIdsYiKA----------dD---~say~eVa----------~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQ----LQKGMVKEAIDSYIKA----------DD---PSSYMEVV----------QAANTSGNWEELVKY 1156 (1630)
T ss_pred CHHHHHHHHHHH----HhCCCHHHHHHHHHhc----------CC---hHHHHHHH----------HHHHHcCCHHHHHHH
Confidence 356888999877 6999999999999775 22 35566677 777999999999999
Q ss_pred HHHHHHHHHHh------------hCC--------CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 113 HQNALVLSLKH------------FGE--------NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 113 ~~~al~~~~~~------------~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
+..|.+..+.. .+. +.+.. ..+.++|..+...|+|++|..+|.+|
T Consensus 1157 L~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-------------- 1221 (1630)
T 1xi4_A 1157 LQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------------- 1221 (1630)
T ss_pred HHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------------
Confidence 99887643110 000 01111 23456788888888888888888774
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF 252 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (303)
..|..+|.++. .+|++++|++++++|..... -..++.++...+.+..|..... .-...+..+..++..|...|.+
T Consensus 1222 --~ny~rLA~tLv-kLge~q~AIEaarKA~n~~a-Wkev~~acve~~Ef~LA~~cgl-~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1222 --SNFGRLASTLV-HLGEYQAAVDGARKANSTRT-WKEVCFACVDGKEFRLAQMCGL-HIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred --hHHHHHHHHHH-HhCCHHHHHHHHHHhCCHHH-HHHHHHHHhhhhHHHHHHHHHH-hhhcCHHHHHHHHHHHHHcCCH
Confidence 24667888886 88888888888888744321 1123333333344444442211 1112233466888899999999
Q ss_pred HHHHHHHHHH
Q psy4339 253 EKMTEFTNKL 262 (303)
Q Consensus 253 ~~A~~~~~~~ 262 (303)
++|+.+++..
T Consensus 1297 eEAI~LlE~a 1306 (1630)
T 1xi4_A 1297 EELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHHH
Confidence 9999955443
No 181
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.14 E-value=1.6e-09 Score=94.42 Aligned_cols=148 Identities=15% Similarity=0.009 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+.+|++.+++....+ +..+..+.+||.+|..-....+++++|+.+|+++. |....++.++|.++
T Consensus 195 ~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~---- 258 (452)
T 3e4b_A 195 QAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLL---- 258 (452)
T ss_dssp HHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHH----
Confidence 334444444433222 33455678999766310011269999999999874 23457788889442
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-----cHHHHHHHHHHHHHHHHHhcCCC
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-----KFDEAERMQLKAIAIKEKVLGKD 169 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~ 169 (303)
......+++++|+.+|+++.+. + ...++.+||.+|. .| ++++|+.+|+++.
T Consensus 259 ---~~~~~~~d~~~A~~~~~~Aa~~-------g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---------- 314 (452)
T 3e4b_A 259 ---YDFPELGDVEQMMKYLDNGRAA-------D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---------- 314 (452)
T ss_dssp ---HHSGGGCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----------
T ss_pred ---HhCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----------
Confidence 1114589999999999999862 2 3567889999998 66 9999999999986
Q ss_pred chHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHh
Q psy4339 170 DYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al~~ 204 (303)
+....+++++|.+|. . ..++++|..+|+++.+.
T Consensus 315 -~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 315 -GREVAADYYLGQIYR-RGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp -TTCHHHHHHHHHHHH-TTTTSSCCHHHHHHHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHH-CCCCCCcCHHHHHHHHHHHHhh
Confidence 122467899999985 4 23999999999999874
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.14 E-value=5.9e-11 Score=81.94 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF 211 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 211 (303)
..++..+|.++...|++++|+.++++++++. |....++.++|.++. ..|++++|+.+++++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~----- 71 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIE----- 71 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCc-----
Confidence 4457789999999999999999999999863 333567899999997 99999999999999998877
Q ss_pred hhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh-hcHHHHHHHHHHH
Q psy4339 212 SASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL-ENFEKMTEFTNKL 262 (303)
Q Consensus 212 ~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~ 262 (303)
. .....++..+|.++... |++++|+++++.+
T Consensus 72 --------------~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 72 --------------D------EYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp --------------C------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred --------------c------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 11456789999999999 9999999966554
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=3.8e-10 Score=100.87 Aligned_cols=171 Identities=10% Similarity=-0.029 Sum_probs=135.5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc----------HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHH
Q psy4339 17 LALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR----------FTESRRHAEKAIQTFKNLLPENHLLLTSAHRVK 86 (303)
Q Consensus 17 ~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 86 (303)
+|++.+.+++. .+|+...+++..+.++ ...|+ +++++.++.++++. +|....+++..
T Consensus 47 eal~~~~~~l~-~nP~~~taW~~R~~~l----~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y~aW~hR 113 (567)
T 1dce_A 47 SVLELTSQILG-ANPDFATLWNCRREVL----QHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHR 113 (567)
T ss_dssp HHHHHHHHHHH-HCTTCHHHHHHHHHHH----HHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHHHHHHHHH-HCchhHHHHHHHHHHH----HhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 34444444332 2577778899999877 46777 89999999999876 67777888899
Q ss_pred HHHHHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHH
Q psy4339 87 ALILEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-KFDEAERMQLKAIAIKE 163 (303)
Q Consensus 87 a~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~ 163 (303)
++++ ...+ +++++++.+.++++. +|....++...+.+....| .++++++++.++++.
T Consensus 114 ~w~l----------~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 114 CWLL----------SRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp HHHH----------HTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred HHHH----------HHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 9544 6778 779999999999996 4666788999999999999 899999999998864
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhh--------------cCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhc
Q psy4339 164 KVLGKDDYEVGLSVGHLASLYNYHM--------------LEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFS 229 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~ 229 (303)
+|....+|++.+.++. .. +.+++|++++.+|+.+.|
T Consensus 174 ------~p~n~saW~~r~~ll~-~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P----------------------- 223 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLP-QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP----------------------- 223 (567)
T ss_dssp ------TCCCHHHHHHHHHHHH-HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-----------------------
T ss_pred ------CCCCccHHHHHHHHHH-hhcccccccccccccHHHHHHHHHHHHHHHhhCC-----------------------
Confidence 3666788999999986 75 678999999999998887
Q ss_pred cccccHHHHHHhHHHHHHhhhcHHH
Q psy4339 230 ASYSGLEYDYRGLIHVYECLENFEK 254 (303)
Q Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~ 254 (303)
....+++.++.++...+++++
T Consensus 224 ----~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 224 ----NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ----SCSHHHHHHHHHHSCCCCCSC
T ss_pred ----CCccHHHHHHHHHhcCCCccc
Confidence 334567788888888877544
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.12 E-value=5.3e-10 Score=81.59 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=73.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh----------HHHHHHHHHHHHHH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF----------YKEAELLHQNALVL 119 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~ 119 (303)
+.+.|++|+..+++++++ +|..+.++.++|.++ ...++ +++|+..|++|+++
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l----------~~l~~~~~g~~al~~~~eAi~~le~AL~l 75 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVL----------LELSQFHSISDAKQMIQEAITKFEEALLI 75 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----------HHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHH----------HHhcccchhhhhHhHHHHHHHHHHHHHHh
Confidence 568899999999999988 677778999999444 55554 56999999999997
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHhh-----------cHHHHHHHHHHHHHHH
Q psy4339 120 SLKHFGENNVQTAKHYGNIGRLYQSMQ-----------KFDEAERMQLKAIAIK 162 (303)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~ 162 (303)
+|....+++++|.+|..+| ++++|+.+|++|+++.
T Consensus 76 --------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 76 --------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 4667788999999999885 8999999999999984
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.09 E-value=7.1e-09 Score=86.09 Aligned_cols=206 Identities=9% Similarity=-0.019 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHH
Q psy4339 10 NLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG-RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88 (303)
Q Consensus 10 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 88 (303)
.|.+++.+++.+ +|+...+++..+.++ ...| .+++++.++.+++.. +|....+++..++
T Consensus 72 ~AL~lt~~~L~~--------nP~~ytaWn~R~~iL----~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~w 131 (349)
T 3q7a_A 72 RALELTEIIVRM--------NPAHYTVWQYRFSLL----TSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CchhHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHH
Confidence 344445555444 577778889999888 5777 599999999999865 5666788888885
Q ss_pred HHHHHhhhhHHHHhh-h-hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH--------HHHHHHHHH
Q psy4339 89 ILEEIALDSNELISV-Q-FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD--------EAERMQLKA 158 (303)
Q Consensus 89 ~~~~~~~~~~~~~~~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~A~~~~~~a 158 (303)
++ ... + ++++++.++.++++. +|....++...+.+....|.++ +++++++++
T Consensus 132 lL----------~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 132 LL----------DRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp HH----------HHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HH----------HHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 55 444 5 778888888887763 5666788999999999999988 999999998
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHHhhhhhhhh----hhhhhhhhh-------
Q psy4339 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE-------YHKAEKLYFRSIEINDNLKLF----SASYSGLEY------- 220 (303)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~----~~~~~~l~~------- 220 (303)
++.. |....++++.+.++. ..++ ++++++++++++.+.|++... ...+...+.
T Consensus 194 I~~d--------p~N~SAW~~R~~lL~-~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~ 264 (349)
T 3q7a_A 194 LRVD--------GRNNSAWGWRWYLRV-SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILP 264 (349)
T ss_dssp HHHC--------TTCHHHHHHHHHHHT-TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred HHhC--------CCCHHHHHHHHHHHH-hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccc
Confidence 8753 556678999999997 8887 799999999999988854321 111111110
Q ss_pred ----------------hH-HHHhhhcc-----ccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 221 ----------------HY-RDLKLFSA-----SYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 221 ----------------~~-~a~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
+. .+++.... ..+....++.-|+.+|...|+.++|.+.++.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 00 11111111 12345677889999999999999999966655
No 186
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.07 E-value=1.2e-09 Score=72.36 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
++....++..+|.++...|++++|+.++++++++. |....++.++|.++. ..|++++|+.++++++.+.|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p- 74 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDP- 74 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC-
Confidence 44567789999999999999999999999999863 334567899999997 99999999999999998877
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhh
Q psy4339 208 LKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLE 250 (303)
Q Consensus 208 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 250 (303)
....++.++|.++...|
T Consensus 75 --------------------------~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 --------------------------NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHC
T ss_pred --------------------------CCHHHHHHHHHHHHhcC
Confidence 34456778888877654
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.05 E-value=3.9e-10 Score=96.01 Aligned_cols=193 Identities=16% Similarity=0.038 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHh
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIA 94 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 94 (303)
+++|.+.+++. ++| .++..||.++ ...|++++|++.|.++- ++ ..+..++
T Consensus 19 ld~A~~fae~~---~~~---~vWs~La~A~----l~~g~~~eAIdsfika~----------D~---~~y~~V~------- 68 (449)
T 1b89_A 19 LDRAYEFAERC---NEP---AVWSQLAKAQ----LQKGMVKEAIDSYIKAD----------DP---SSYMEVV------- 68 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC---CCh---HHHHHHHHHH----HHcCCHHHHHHHHHcCC----------CH---HHHHHHH-------
Confidence 44555555543 233 4888999877 69999999999997631 12 2445555
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHh------------hC--------CCcHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy4339 95 LDSNELISVQFYKEAELLHQNALVLSLKH------------FG--------ENNVQTAKHYGNIGRLYQSMQKFDEAERM 154 (303)
Q Consensus 95 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 154 (303)
..+...|++++|+.+++.+++..+.. .| -+.|. ..++.++|..+...|+|++|..+
T Consensus 69 ---~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn-~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 69 ---QAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------------CHHHHTTTTTCC-----------------CTTTHHHH
T ss_pred ---HHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCc-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 55577889999999888887642110 00 01122 23788899999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcc--cc
Q psy4339 155 QLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSA--SY 232 (303)
Q Consensus 155 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~--~~ 232 (303)
|.++ ..+..+|.++. .+|++++|++.++++... ..-..+..++-.++.+.+|...... .+
T Consensus 145 Y~~a----------------~n~~~LA~~L~-~Lg~yq~AVea~~KA~~~-~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ 206 (449)
T 1b89_A 145 YNNV----------------SNFGRLASTLV-HLGEYQAAVDGARKANST-RTWKEVCFACVDGKEFRLAQMCGLHIVVH 206 (449)
T ss_dssp HHHT----------------TCHHHHHHHHH-TTTCHHHHHHHHHHHTCH-HHHHHHHHHHHHTTCHHHHHHTTTTTTTC
T ss_pred HHHh----------------hhHHHHHHHHH-HhccHHHHHHHHHHcCCc-hhHHHHHHHHHHcCcHHHHHHHHHHHHhC
Confidence 8865 24678999996 999999999999998321 1113455666666677776532211 34
Q ss_pred ccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 233 SGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
|+. ...++..|.+.|++++|+.+++..
T Consensus 207 ad~---l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 207 ADE---LEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhh---HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 443 446888999999999999966554
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=5.8e-10 Score=76.99 Aligned_cols=96 Identities=9% Similarity=-0.035 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF 211 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 211 (303)
+..+.++|.++...|++++|+.+|++++++. |....++.++|.++. .+|++++|+..+++++.+.|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p----- 69 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTS----- 69 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCS-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCC-----
Confidence 4678899999999999999999999999873 444677899999997 99999999999999999887
Q ss_pred hhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 212 SASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 212 ~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.. ........++..+|.++...|++++|+.
T Consensus 70 --------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 70 --------------TA--EHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp --------------ST--TSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred --------------Cc--cHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 11 0111236678899999999998887765
No 189
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.03 E-value=1.1e-08 Score=97.35 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHH---------------------HHHHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTS---------------------AHRVKALILEE 92 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------------------~~~~la~~~~~ 92 (303)
...+..+|.++ ...|+|++|+.++..|.+..+.. .-+...+. .+..+|
T Consensus 1134 ~say~eVa~~~----~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iG----- 1202 (1630)
T 1xi4_A 1134 PSSYMEVVQAA----NTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFINGPNNAHIQQVG----- 1202 (1630)
T ss_pred hHHHHHHHHHH----HHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHH-----
Confidence 45777889877 69999999999999887653110 00001111 122344
Q ss_pred HhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH--H------
Q psy4339 93 IALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE--K------ 164 (303)
Q Consensus 93 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~------ 164 (303)
..+...|+|++|..+|.++ ..|..+|.++..+|++++|++.+++|....- .
T Consensus 1203 -----d~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1203 -----DRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 1261 (1630)
T ss_pred -----HHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 6668888888888888774 2577899999999999999999998854321 0
Q ss_pred ---------hcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhh------hhhhhhhhhhHHHHhhhc
Q psy4339 165 ---------VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLF------SASYSGLEYHYRDLKLFS 229 (303)
Q Consensus 165 ---------~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~l~~~~~a~~~~~ 229 (303)
..|......+..+..++..|. ..|.+++|+.++++++.+.+.|..+ ..+.+..+.+.+.++.+.
T Consensus 1262 e~~Ef~LA~~cgl~Iiv~~deLeeli~yYe-~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVVHADELEELINYYQ-DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hhhHHHHHHHHHHhhhcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 001111112234557888997 9999999999999999888765432 222233345555544332
Q ss_pred cc---cc-----cHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 230 AS---YS-----GLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 230 ~~---~~-----~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.. .+ .....|..+..+|.+-|+++.|..
T Consensus 1341 ~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 21 11 345668889999999999999995
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.01 E-value=3e-09 Score=74.09 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+|+..|+++++. .|....++.++|.++...|++++|+.++++++++. |....++.++|.++. .
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-~ 65 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------PTYSVAWKWLGKTLQ-G 65 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHH-H
Confidence 467777777763 34445788999999999999999999999999863 445668899999997 9
Q ss_pred hcCHHHHHHHHHHHHHhhh
Q psy4339 188 MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~ 206 (303)
.|++++|+.+|++++.+.+
T Consensus 66 ~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999888
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=3.5e-08 Score=81.51 Aligned_cols=151 Identities=11% Similarity=-0.010 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhccc----------HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHH
Q psy4339 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGR----------FTESRRHAEKAIQTFKNLLPENHLLLTSAHRV 85 (303)
Q Consensus 16 ~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (303)
++|++....++. -+|+...+++..+.++ ...+. +++++.++..++.. +|....+++.
T Consensus 47 ~eaL~~t~~~L~-~nP~~ytaWn~Rr~iL----~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PKny~aW~h 113 (331)
T 3dss_A 47 ESVLELTSQILG-ANPDFATLWNCRREVL----QHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHH 113 (331)
T ss_dssp HHHHHHHHHHHT-TCTTCHHHHHHHHHHH----HHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HCchhHHHHHHHHHHH----HHhcccccchhhhHHHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 356666666653 3577777888888777 34444 57777777777765 5666788888
Q ss_pred HHHHHHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHHH
Q psy4339 86 KALILEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQK-FDEAERMQLKAIAIK 162 (303)
Q Consensus 86 la~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~ 162 (303)
.++++ ...| .+++++.++.++++. +|....++...+.+....|. ++++++++.++++..
T Consensus 114 R~wlL----------~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 114 RCWLL----------SRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHHHH----------HHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHH----------hccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 88554 5556 489999999999985 56667889999999999999 699999999999753
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHhh--------------cCHHHHHHHHHHHHHhhh
Q psy4339 163 EKVLGKDDYEVGLSVGHLASLYNYHM--------------LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~~--------------g~~~~A~~~~~~al~~~~ 206 (303)
|....++++.+.++. .. +.++++++++.+++.+.|
T Consensus 176 --------p~N~SAW~~R~~ll~-~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 176 --------FSNYSSWHYRSCLLP-QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp --------SCCHHHHHHHHHHHH-HHSCCC------CCCHHHHHHHHHHHHHHHHHST
T ss_pred --------CCCHHHHHHHHHHHH-HhhhccccccccccchHHHHHHHHHHHHHHHhCC
Confidence 556678899999986 77 668999999999999888
No 192
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=1e-07 Score=78.72 Aligned_cols=153 Identities=6% Similarity=-0.073 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH
Q psy4339 14 CSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSG--RFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91 (303)
Q Consensus 14 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 91 (303)
.++++++....++. .+|....+++..++++ ...| .+++++.++.++++. +|....+++..+++.
T Consensus 89 ~l~~EL~~~~~~L~-~~PKny~aW~hR~wlL----~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl- 154 (331)
T 3dss_A 89 LVKAELGFLESCLR-VNPKSYGTWHHRCWLL----SRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVA- 154 (331)
T ss_dssp HHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH----HHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH----hccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH-
Confidence 35566666555542 3577788999999888 5677 489999999999987 566667788888444
Q ss_pred HHhhhhHHHHhhhh-HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh--------------hcHHHHHHHHH
Q psy4339 92 EIALDSNELISVQF-YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM--------------QKFDEAERMQL 156 (303)
Q Consensus 92 ~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~ 156 (303)
...|. ++++++++.+++.. +|....++++.+.++... +.++++++++.
T Consensus 155 ---------~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~ 217 (331)
T 3dss_A 155 ---------AQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 217 (331)
T ss_dssp ---------HHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHH
T ss_pred ---------HHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHH
Confidence 56676 68999999999985 566677899999998887 67999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh-----------cCHHHHHHHHHHHHHhhh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM-----------LEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------g~~~~A~~~~~~al~~~~ 206 (303)
+++.+. |....+++.+..++. .. +.++++++++++++++.|
T Consensus 218 ~ai~~~--------P~d~SaW~Y~r~ll~-~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 218 NAFFTD--------PNDQSAWFYHRWLLG-AGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp HHHHHS--------TTCHHHHHHHHHHHH-SSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhC--------CCCHHHHHHHHHHHH-hccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 999864 555566766655554 44 468899999999998887
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.96 E-value=3.7e-09 Score=71.79 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+|....++.++|.+|..+|++++|+.+|++++++. |....++.++|.+|. ..|++++|+..+++++.+.+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD--------PDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhh
Confidence 35566789999999999999999999999999874 444568999999997 99999999999999999987
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.95 E-value=7e-09 Score=72.21 Aligned_cols=83 Identities=10% Similarity=-0.009 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 135 (303)
+|+..|+++++. +|....++.++| .++...|++++|+.++++++.. .|....++
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 56 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLG----------KTYAEHEQFDAALPHLRAALDF--------DPTYSVAW 56 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHH----------HHHHHccCHHHHHHHHHHHHHH--------CCCcHHHH
Confidence 577788887765 445567888999 6779999999999999999986 34456688
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.++|.++..+|++++|+.+|++++++...
T Consensus 57 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 57 KWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998644
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=3.1e-10 Score=78.39 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 80 TSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
+..+..+| .++...|++++|+..|++++++ .|....++.++|.++..+|++++|+.++++++
T Consensus 4 ~~~~~~~g----------~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 4 FEKQKEQG----------NSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHH----------HHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH----------HHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45667778 7779999999999999999996 23446678999999999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 160 AIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
++.... .+......++..+|.++. ..|++++|+..++
T Consensus 66 ~~~p~~--~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 66 RYTSTA--EHVAIRSKLQYRLELAQG-AVGSVQIPVVEVD 102 (111)
T ss_dssp TSCSST--TSHHHHHHHHHHHHHHHH-HHHCCCCCSSSSS
T ss_pred HhCCCc--cHHHHHHHHHHHHHHHHH-HHHhHhhhHhHHH
Confidence 764110 011123677889999997 8998877765544
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.93 E-value=1.5e-08 Score=66.95 Aligned_cols=88 Identities=25% Similarity=0.164 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 29 ~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
+.+..+.++..+|.++ ...|++++|+.+++++++. .|....++.++| .++...|++++
T Consensus 4 ~~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~----------~~~~~~~~~~~ 61 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAY----YKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLG----------NAYYKQGDYDE 61 (91)
T ss_dssp --CHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred cccccHHHHHHHHHHH----HHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHH----------HHHHHHhhHHH
Confidence 3456778999999877 5999999999999999987 344457788899 67799999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ 146 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 146 (303)
|+.+++++++. .|....++.++|.++..+|
T Consensus 62 A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 62 AIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcC
Confidence 99999999986 2444567889999887654
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.91 E-value=1.7e-08 Score=72.88 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=91.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHH
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQ 130 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 130 (303)
.+++++|+.+|+++.+. .++. +. +| .+|...+..++|+.+|+++.+. .
T Consensus 8 ~~d~~~A~~~~~~aa~~-------g~~~---a~--lg----------~~y~~g~~~~~A~~~~~~Aa~~-------g--- 55 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-------NEMF---GC--LS----------LVSNSQINKQKLFQYLSKACEL-------N--- 55 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCTT---HH--HH----------HHTCTTSCHHHHHHHHHHHHHT-------T---
T ss_pred ccCHHHHHHHHHHHHcC-------CCHh---hh--HH----------HHHHcCCCHHHHHHHHHHHHcC-------C---
Confidence 46889999999999765 2232 11 78 5567788889999999999874 2
Q ss_pred HHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHH
Q psy4339 131 TAKHYGNIGRLYQS----MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH----MLEYHKAEKLYFRSI 202 (303)
Q Consensus 131 ~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~g~~~~A~~~~~~al 202 (303)
...+..+||.+|.. .+++++|+.+|++|.+. ....++++||.+|. . .+++++|+.+|+++.
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQY-AGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHH-CCCCCCcCHHHHHHHHHHHH
Confidence 34678899999999 89999999999999863 12467899999997 8 899999999999998
Q ss_pred Hhhh
Q psy4339 203 EIND 206 (303)
Q Consensus 203 ~~~~ 206 (303)
+...
T Consensus 125 ~~g~ 128 (138)
T 1klx_A 125 RLGS 128 (138)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 7643
No 198
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=1.4e-07 Score=76.89 Aligned_cols=170 Identities=8% Similarity=-0.140 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcc--hhhhHHHHHHHHHH
Q psy4339 13 LCSQLALKLKQVLFGSEN-LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN--HLLLTSAHRVKALI 89 (303)
Q Consensus 13 ~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~ 89 (303)
.-+++|++.+.+.++.+. +...++...++.++ ..+|+.+.|.+.+++..+.. ++ ..+ -.+...++..
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~----L~~~r~d~A~k~l~~~~~~~-----~d~~~~~-d~~l~~Laea 183 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVA----LLNNNVSTASTIFDNYTNAI-----EDTVSGD-NEMILNLAES 183 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHS-----CHHHHHH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHH----HHCCCHHHHHHHHHHHHhcC-----ccccccc-hHHHHHHHHH
Confidence 346678888777665443 46778888888777 69999999999999876651 10 001 1222333322
Q ss_pred HHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 90 LEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGENNVQ--TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 90 ~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
.+....| ++.+|..+|++.... .|. ....+.+ ++..+|++++|...++..++..-..
T Consensus 184 --------~v~l~~g~~~~q~A~~~f~El~~~--------~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 184 --------YIKFATNKETATSNFYYYEELSQT--------FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp --------HHHHHHTCSTTTHHHHHHHHHHTT--------SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred --------HHHHHhCCccHHHHHHHHHHHHHh--------CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 1123345 899999999996542 222 2223333 8999999999999999776654211
Q ss_pred cCCC--chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhh
Q psy4339 166 LGKD--DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSAS 214 (303)
Q Consensus 166 ~~~~--~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 214 (303)
-..+ .|..+.++.|+..+.. .+|+ +|.++++++.+..|+||.+...
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~-~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLAL-MQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHH-HTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHH-HhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 0000 2456677888888886 8998 8999999999999866654433
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.87 E-value=2e-07 Score=83.33 Aligned_cols=151 Identities=8% Similarity=-0.020 Sum_probs=121.5
Q ss_pred hcccH-HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhh----------HHHHHHHHHHHHH
Q psy4339 50 SSGRF-TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF----------YKEAELLHQNALV 118 (303)
Q Consensus 50 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~ 118 (303)
..|.+ ++|+..+.+++.+ +|....+++..+.++ ...|+ +++++..+.+++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l----------~~l~~~~~~~~~~~~~~~eL~~~~~~l~ 101 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVL----------QHLETEKSPEESAALVKAELGFLESCLR 101 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----------HHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHH----------HhcccccchhhhhhhHHHHHHHHHHHHH
Confidence 34444 6789999999988 677778888889444 56666 8999999999988
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc-CHHHHH
Q psy4339 119 LSLKHFGENNVQTAKHYGNIGRLYQSMQ--KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML-EYHKAE 195 (303)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-~~~~A~ 195 (303)
. +|....++.+.+.++...+ ++++++.++.+++++. |....+|...+.+.. ..| .+++++
T Consensus 102 ~--------~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~-~l~~~~~~el 164 (567)
T 1dce_A 102 V--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAA-QAAVAPAEEL 164 (567)
T ss_dssp H--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTCCCHHHHH
T ss_pred h--------CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHH-HcCCChHHHH
Confidence 5 5667788999999999999 7799999999999874 556788999999997 999 899999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh--------------hcHHHHHHHH-H
Q psy4339 196 KLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL--------------ENFEKMTEFT-N 260 (303)
Q Consensus 196 ~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~-~ 260 (303)
+++.++++..+ ....+++..+.++... +.+++|+++. +
T Consensus 165 ~~~~~~I~~~p---------------------------~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 165 AFTDSLITRNF---------------------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp HHHHTTTTTTC---------------------------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---------------------------CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence 99999987666 4556677777777764 6678888844 4
Q ss_pred HH
Q psy4339 261 KL 262 (303)
Q Consensus 261 ~~ 262 (303)
++
T Consensus 218 ai 219 (567)
T 1dce_A 218 AF 219 (567)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 200
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=2.5e-07 Score=75.81 Aligned_cols=178 Identities=7% Similarity=-0.100 Sum_probs=133.8
Q ss_pred hcccH-HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh--hHHHHHHHHHHHHHHHHHhhCC
Q psy4339 50 SSGRF-TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ--FYKEAELLHQNALVLSLKHFGE 126 (303)
Q Consensus 50 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 126 (303)
..|.+ ++|+..+.+++.+ +|....+.+..+ .+....| .+++++..+.+++..
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~----------~~L~~l~~~~~~eeL~~~~~~L~~------- 98 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--------LASHYTIWIYRF----------NILKNLPNRNLYDELDWCEEIALD------- 98 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHTCTTSCHHHHHHHHHHHHHH-------
T ss_pred HcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHH----------HHHHHcccccHHHHHHHHHHHHHH-------
Confidence 45555 6899999999998 677778888889 4447777 999999999999985
Q ss_pred CcHHHHHHHHHHHHHH----HHh---hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH--HHHHH
Q psy4339 127 NNVQTAKHYGNIGRLY----QSM---QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH--KAEKL 197 (303)
Q Consensus 127 ~~~~~~~~~~~la~~~----~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~--~A~~~ 197 (303)
+|....+++..+.++ ... +++++++.++.++++.. |....+++..+.+.. ..|.++ +++++
T Consensus 99 -nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--------pkny~aW~~R~~vl~-~l~~~~~~~EL~~ 168 (306)
T 3dra_A 99 -NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--------PKNHHVWSYRKWLVD-TFDLHNDAKELSF 168 (306)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCTTCHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-HhcccChHHHHHH
Confidence 455567788888888 666 78999999999999763 666788999999998 999998 99999
Q ss_pred HHHHHHhhhhhhh----hhhhhhhhhh------hHHHHh---hhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 198 YFRSIEINDNLKL----FSASYSGLEY------HYRDLK---LFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 198 ~~~al~~~~~~~~----~~~~~~~l~~------~~~a~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
++++++..+.+.. -...+..++. +.++++ ..-..+|....+++.++.++...|+..++.. +...+
T Consensus 169 ~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 169 VDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 9999988774321 1122222222 333432 2234578899999999999999998666554 55443
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.83 E-value=2.8e-08 Score=67.37 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=60.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy4339 76 HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQ 155 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 155 (303)
+|....++.++| .++...|++++|+.+|++++++ .|....++.++|.+|..+|++++|+..+
T Consensus 3 ~p~~~~~~~~lg----------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 3 DPEDPFTRYALA----------QEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp --CCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455667888999 7779999999999999999996 3444568999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4339 156 LKAIAIKEK 164 (303)
Q Consensus 156 ~~al~~~~~ 164 (303)
++++++...
T Consensus 65 ~~al~l~~~ 73 (100)
T 3ma5_A 65 AQGIEVARE 73 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhhc
Confidence 999998754
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.83 E-value=7.2e-08 Score=69.57 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=89.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..+++++|+.+|+++.+. .++.. . +|.+|...+.+++|+++|+++.+. ....+++++|
T Consensus 7 ~~~d~~~A~~~~~~aa~~-------g~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg 64 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACEL-------NEMFG---C--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLG 64 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TCTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHcC-------CCHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHH
Confidence 357899999999999874 23322 2 999999999999999999999863 1246789999
Q ss_pred HHHHHh----hcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHh----hhcHH
Q psy4339 182 SLYNYH----MLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYEC----LENFE 253 (303)
Q Consensus 182 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 253 (303)
.+|. . .+++++|+.+|+++.+.. ...+.++||.+|.. .++++
T Consensus 65 ~~y~-~G~g~~~d~~~A~~~~~~Aa~~g-----------------------------~~~a~~~Lg~~y~~G~g~~~d~~ 114 (138)
T 1klx_A 65 DFYE-NGKYVKKDLRKAAQYYSKACGLN-----------------------------DQDGCLILGYKQYAGKGVVKNEK 114 (138)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHHHHHTT-----------------------------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHH-cCCCCCccHHHHHHHHHHHHcCC-----------------------------CHHHHHHHHHHHHCCCCCCcCHH
Confidence 9997 7 789999999999997542 34568999999999 99999
Q ss_pred HHHHHHHHH
Q psy4339 254 KMTEFTNKL 262 (303)
Q Consensus 254 ~A~~~~~~~ 262 (303)
+|.++++..
T Consensus 115 ~A~~~~~~A 123 (138)
T 1klx_A 115 QAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999966554
No 203
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.72 E-value=1.4e-07 Score=80.43 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=81.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
.++...|+|++|++.++++. + ..++..++.++...|+|+.|..+.... ..+|+. .
T Consensus 156 ~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~---l 210 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADE---L 210 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHH---H
T ss_pred HHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhh---H
Confidence 44455555555555555541 1 233445555555555665554443321 123443 2
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhh------hhhhhhhhhhhHHHHhhhccc--cc------cHHHHHHhHH
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL------FSASYSGLEYHYRDLKLFSAS--YS------GLEYDYRGLI 243 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~l~~~~~a~~~~~~~--~~------~~~~~~~~la 243 (303)
..+...|. +.|++++|+.++++++.+.+.|.. +..+.+..+.+.+.++.+... .| .....+..+.
T Consensus 211 ~~lv~~Ye-k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 211 EELINYYQ-DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 35778898 999999999999999988775532 233334445666665544322 11 2234577899
Q ss_pred HHHHhhhcHHHHHH
Q psy4339 244 HVYECLENFEKMTE 257 (303)
Q Consensus 244 ~~~~~~g~~~~A~~ 257 (303)
.+|...++++.|..
T Consensus 290 ~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 290 FLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHhhchHHHHHH
Confidence 99999999999987
No 204
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=5.2e-07 Score=74.92 Aligned_cols=163 Identities=9% Similarity=-0.036 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEA 109 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A 109 (303)
|+...++..+..+. ...+..++|+.++.+++.+ +|....+++..+. +....| .++++
T Consensus 51 ~~y~~~~~~~r~~~----~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~----------iL~~l~~~l~eE 108 (349)
T 3q7a_A 51 EEYKDAMDYFRAIA----AKEEKSERALELTEIIVRM--------NPAHYTVWQYRFS----------LLTSLNKSLEDE 108 (349)
T ss_dssp HHHHHHHHHHHHHH----HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHH----------HHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHH----------HHHHhhhhHHHH
Confidence 44455666665444 4566668899999999988 6777788888884 446677 59999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-h-cHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-Q-KFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+..+.+++.. +|....+++..+.++... + ++++++.++.++++. +|....++...+.+.. .
T Consensus 109 L~~~~~~L~~--------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~-~ 171 (349)
T 3q7a_A 109 LRLMNEFAVQ--------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYS-H 171 (349)
T ss_dssp HHHHHHHHHT--------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH-H
Confidence 9999999874 566678899999999998 7 899999999988853 3666778999999997 8
Q ss_pred hcCHH--------HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhc-------H
Q psy4339 188 MLEYH--------KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLEN-------F 252 (303)
Q Consensus 188 ~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-------~ 252 (303)
.|.++ +++++++++++..+ ....+++..+.+....++ +
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~~dp---------------------------~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLRVDG---------------------------RNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCT---------------------------TCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred hccccccchhhHHHHHHHHHHHHHhCC---------------------------CCHHHHHHHHHHHHhccccccchHHH
Confidence 88888 89999999888766 445567777777777765 5
Q ss_pred HHHHHHH
Q psy4339 253 EKMTEFT 259 (303)
Q Consensus 253 ~~A~~~~ 259 (303)
++++++.
T Consensus 225 ~eELe~~ 231 (349)
T 3q7a_A 225 QDELIYI 231 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6777644
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.53 E-value=2.1e-07 Score=62.51 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=61.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHH-HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK-HYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLS 176 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 176 (303)
..+...|++++|+..++++++. .|.... ++.++|.+|..+|++++|+.+|++++++. ++++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~--- 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-----PDSPAL--- 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTHH---
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcHHH---
Confidence 5668889999999999998885 233345 78889999999999999999999998764 333321
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+ ..+.+.+++.+|++++...|
T Consensus 72 ~---------~~~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 72 Q---------ARKMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp H---------HHHHHHHHHHHHCCTTHHHH
T ss_pred H---------HHHHHHHHHHHHHHHhccCc
Confidence 1 12556677778887777666
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.48 E-value=1.2e-05 Score=66.86 Aligned_cols=129 Identities=13% Similarity=0.026 Sum_probs=92.0
Q ss_pred cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh-hHHHHHHHHHHHHHHHHHhhCCCcH
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ-FYKEAELLHQNALVLSLKHFGENNV 129 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~ 129 (303)
..++.+|+.+|++|+++ +|..+.++..+++++. .....+ .-.....-...++...... ...|
T Consensus 212 ~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~-------~~~~~~~~~~~~~~~l~~a~~a~~a~--~~~~ 274 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQS--------SPEFTYARAEKALVDI-------VRHSQHPLDEKQLAALNTEIDNIVTL--PELN 274 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH-------HHHHHSCCCHHHHHHHHHHHHHHHTC--GGGT
T ss_pred HHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH-------HHhccCCCchhhHHHHHHHHHHHHhc--ccCC
Confidence 45678999999999998 7787788877776552 111111 1111222233333322111 2345
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....++..+|..+...|++++|+..+++|+.+. |. ...+..+|.++. ..|++++|++.|.+|+.+.|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYE-MKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 566778888998998999999999999999873 22 456788999998 89999999999999999988
No 207
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.46 E-value=2.2e-05 Score=71.45 Aligned_cols=213 Identities=8% Similarity=-0.091 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHH-HHHHHHHHHHHhhCCcchhhhHHHHHHHHHHH
Q psy4339 12 SLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESR-RHAEKAIQTFKNLLPENHLLLTSAHRVKALIL 90 (303)
Q Consensus 12 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 90 (303)
...|++|+.. .|.....+...+..+ ...|+.++|. ..|++|+.. .|.....+...+
T Consensus 329 ~~~Ye~aL~~--------~p~~~~lW~~ya~~~----~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a--- 385 (679)
T 4e6h_A 329 TYVYMQAAQH--------VCFAPEIWFNMANYQ----GEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLS--- 385 (679)
T ss_dssp HHHHHHHHHH--------TTTCHHHHHHHHHHH----HHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHH---
T ss_pred HHHHHHHHHH--------cCCCHHHHHHHHHHH----HhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHH---
Confidence 3445555544 344556777777544 5788888997 999999875 233334444455
Q ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh------CCC--------cHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 91 EEIALDSNELISVQFYKEAELLHQNALVLSLKHF------GEN--------NVQTAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
......|+++.|...|++++....... .+. +.....++...+.+....|..+.|...|.
T Consensus 386 -------~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 386 -------EQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp -------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -------HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555788999999999999998642111 011 01244567888888888999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhhhhhhhhhhhhhhhh----hhHHHH---hhh
Q psy4339 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML-EYHKAEKLYFRSIEINDNLKLFSASYSGLE----YHYRDL---KLF 228 (303)
Q Consensus 157 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~l~----~~~~a~---~~~ 228 (303)
+|++.. + +....++...|.+-. ..| +++.|..+|+++++..++.+.+-..|..+. ...+|- +..
T Consensus 459 ~A~~~~----~---~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 459 KCRRLK----K---LVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHTG----G---GSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhc----C---CCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 998641 1 111234556666664 655 489999999999999997776544444332 222221 111
Q ss_pred ccccc---cHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 229 SASYS---GLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 229 ~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
....+ .....+......-...|+.+.+.+..+.+
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 34456667777777889999888866554
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.45 E-value=1.1e-06 Score=58.89 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL-SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+.|.++...|++++|+..++++++.. |.... ++.++|.++. .+|++++|+.+|++++.+.|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999863 44455 8899999997 99999999999999999888
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.44 E-value=3.7e-06 Score=57.17 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.-.+.+|..+...|+|..|+..+++|++...... ...+....++..+|.++. .+|++++|+.++++++.+.|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCC
Confidence 3467899999999999999999999998764321 112446678999999996 99999999999999999888
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.43 E-value=1.4e-05 Score=66.45 Aligned_cols=129 Identities=15% Similarity=0.044 Sum_probs=88.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHH
Q psy4339 5 KILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR 84 (303)
Q Consensus 5 ~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (303)
...+..|..+|++|+++ +|+.+.++..++.++...+...+.-.....-..+++..... ....|..+.++.
T Consensus 212 ~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--~~~~~~~a~~~~ 281 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--LPELNNLSIIYQ 281 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--CGGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--cccCCcCHHHHH
Confidence 44567888888888877 67777788877766642112221112222333444443222 133455666777
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 85 VKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 85 ~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.+| ..+...|++++|+..+++|+.+. |. ..++..+|.++...|++++|++.|.+|+.+.
T Consensus 282 ala----------l~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 282 IKA----------VSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHH----------HHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHH----------HHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777 44477899999999999999971 22 4567889999999999999999999999874
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.37 E-value=2.4e-05 Score=62.52 Aligned_cols=116 Identities=8% Similarity=-0.098 Sum_probs=85.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhh-hHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-----hcHH
Q psy4339 76 HLLLTSAHRVKALILEEIALD-SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-----QKFD 149 (303)
Q Consensus 76 ~~~~~~~~~~la~~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~ 149 (303)
++.-...++..|.++....-. ..-....+....|...+++|+++- .......++..+|.+|... |+.+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd~e 221 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGGME 221 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCCHH
Confidence 344566677777666332110 011234556788999999999971 2233677999999999995 9999
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHhhh
Q psy4339 150 EAERMQLKAIAIKEKVLGKDDYEV-GLSVGHLASLYNYH-MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 150 ~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~-~g~~~~A~~~~~~al~~~~ 206 (303)
+|..+|++|+++. |.. +.+.+..|..+. . +|++++|..++++++...+
T Consensus 222 kA~~~ferAL~Ln--------P~~~id~~v~YA~~l~-~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 222 KAHTAFEHLTRYC--------SAHDPDHHITYADALC-IPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHC--------CTTCSHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhC--------CCCCchHHHHHHHHHH-HhcCCHHHHHHHHHHHHcCCC
Confidence 9999999999985 432 567788899886 6 5999999999999999877
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.36 E-value=1.1e-05 Score=54.71 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=58.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..+...|+|..|+.+|++|+....... ...+....++.++|.++..+|++++|+.++++++++. +++ ..+.
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-----P~~---~~~~ 83 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-----PEH---QRAN 83 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCC---HHHH
Confidence 777999999999999999999865321 1123456788999999999999999999999999864 343 3445
Q ss_pred HHHH
Q psy4339 178 GHLA 181 (303)
Q Consensus 178 ~~la 181 (303)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6665
No 213
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.28 E-value=8.4e-05 Score=67.64 Aligned_cols=160 Identities=14% Similarity=0.027 Sum_probs=105.3
Q ss_pred hHHH-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCC---cchh-------
Q psy4339 9 KNLS-LCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLP---ENHL------- 77 (303)
Q Consensus 9 ~~a~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~------- 77 (303)
+.|. ++|++|+.. .|.....+...+... ...|++++|...|++++........ +..|
T Consensus 360 ~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~e----e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 360 STVITKYLKLGQQC--------IPNSAVLAFSLSEQY----ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp TTHHHHHHHHHHHH--------CTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 4554 777777643 233334556666444 6889999999999999987421100 0001
Q ss_pred ----hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh-cHHHHH
Q psy4339 78 ----LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ-KFDEAE 152 (303)
Q Consensus 78 ----~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~ 152 (303)
....++...+ ....+.|..+.|...|.+|++... .. ....+...|.+-...+ +++.|.
T Consensus 428 ~~~~~~~~vWi~y~----------~~erR~~~l~~AR~vf~~A~~~~~----~~---~~~lyi~~A~lE~~~~~d~e~Ar 490 (679)
T 4e6h_A 428 QLKSKLTYVYCVYM----------NTMKRIQGLAASRKIFGKCRRLKK----LV---TPDIYLENAYIEYHISKDTKTAC 490 (679)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHCHHHHHHHHHHHHHTGG----GS---CTHHHHHHHHHHHTTTSCCHHHH
T ss_pred hhccchHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHhcC----CC---ChHHHHHHHHHHHHhCCCHHHHH
Confidence 1222333333 444778899999999999987411 11 1234555666666655 489999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 153 RMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 153 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..|+++++.. ++.+. .+...+.... ..|+.+.|..+|++++...+
T Consensus 491 ~ife~~Lk~~-----p~~~~---~w~~y~~fe~-~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 491 KVLELGLKYF-----ATDGE---YINKYLDFLI-YVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHH-----TTCHH---HHHHHHHHHH-HHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHC-----CCchH---HHHHHHHHHH-hCCCHHHHHHHHHHHHHhcC
Confidence 9999999875 33343 3456677776 89999999999999998776
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=1.3e-05 Score=57.76 Aligned_cols=91 Identities=13% Similarity=-0.053 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCch-HHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQ---KFDEAERMQLKAIAIKEKVLGKDDY-EVGLSVG 178 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~ 178 (303)
.+....+.+.|.+.+.. .+....+.+++|+++...+ +.++++.++++.++. +.| ....+++
T Consensus 11 ~~~l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY 75 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVF 75 (152)
T ss_dssp HHHHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHH
Confidence 34555666666666541 2245678899999999977 777999999998874 224 5678999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 179 HLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 179 ~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
++|..+. +.|+|++|..++++++++.|+++
T Consensus 76 ~LAv~~~-kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 76 YLAVGNY-RLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHH-HTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHH-HccCHHHHHHHHHHHHhcCCCCH
Confidence 9999995 99999999999999999998433
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.22 E-value=0.00017 Score=63.46 Aligned_cols=165 Identities=15% Similarity=0.005 Sum_probs=110.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
.+.|++++|+..|.+..+. +-.|+. .+++.+-..+...+.. ......+..++|.+.|.+.... .-.
T Consensus 37 ~k~G~~~~A~~lf~~M~~~------Gv~pd~-~tyn~Li~~c~~~~~~-~~~~~~~~l~~A~~lf~~M~~~------G~~ 102 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRN------GVQLSQ-YHYNVLLYVCSLAEAA-TESSPNPGLSRGFDIFKQMIVD------KVV 102 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHH------TCCCCH-HHHHHHHHHHTTCCCC-SSSSCCHHHHHHHHHHHHHHHT------TCC
T ss_pred HhCCCHHHHHHHHHHHHHc------CCCCCH-hHHHHHHHHHHhCCch-hhhhhcchHHHHHHHHHHHHHh------CCC
Confidence 6999999999999987654 122322 2333222011000000 0012345678888888876542 122
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
| ...+|+.+-..|...|++++|..++++..+. .-.|+ ..+++.+-..|. +.|+.++|..++++..+..-
T Consensus 103 P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd-~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~G~-- 171 (501)
T 4g26_A 103 P-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPR-LRSYGPALFGFC-RKGDADKAYEVDAHMVESEV-- 171 (501)
T ss_dssp C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTC--
T ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCc-cceehHHHHHHH-HCCCHHHHHHHHHHHHhcCC--
Confidence 3 3457889999999999999999999987542 12233 356788888887 99999999999998764322
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
.|+ ...+..|-..+.+.|+.++|.++++.+
T Consensus 172 -----------------------~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 172 -----------------------VPE-EPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp -----------------------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------CCC-HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 223 345788889999999999999977665
No 216
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.10 E-value=0.00088 Score=56.50 Aligned_cols=185 Identities=8% Similarity=-0.070 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.+...||..| ...|++++-..++......+... .....+.+..++-..+. ..-+..+.-++.+.
T Consensus 20 ~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~---------~~~~~~~~~~~~~~ 83 (394)
T 3txn_A 20 QGILQQGELY----KQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFL---------DMDAGTGIEVQLCK 83 (394)
T ss_dssp HHHHHHHHHH----HHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHT---------TSCCCHHHHHHHHH
T ss_pred HHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHh---------cCCCcHHHHHHHHH
Confidence 5788899766 69999999888888765554332 11223333333321110 12344566677777
Q ss_pred HHHHHHHHhhCCCcHHHH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHH
Q psy4339 115 NALVLSLKHFGENNVQTA--KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~ 192 (303)
++++..+.. ..... ..-..+|.+|...|+|.+|.+.+.+..+-..+. .+......++..-..+|. .+|++.
T Consensus 84 ~~~~~a~~~----~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~-~~~n~~ 156 (394)
T 3txn_A 84 DCIEWAKQE----KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYH-ALSNLP 156 (394)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHH-HhccHH
Confidence 777776532 22222 244589999999999999999999998877653 345677788888999997 999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhcccccc-HHHHHHhHHHHHH-hhhcHHHHHH-HHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG-LEYDYRGLIHVYE-CLENFEKMTE-FTNKLS 263 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~-~~~~~~ 263 (303)
++...+.+|..+.. .. ..+|. .+.....-|.++. ..++|.+|.. ++++..
T Consensus 157 k~k~~l~~a~~~~~-------------------ai--~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 157 KARAALTSARTTAN-------------------AI--YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHH-------------------HS--CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc-------------------cC--CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 99999999988776 22 13443 4445556777778 7999999999 777753
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.08 E-value=2.3e-05 Score=51.98 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQK---FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.....+..+|.++...++ .++|..++++++++. |....+...+|..+. ..|+|++|+.+++++++..+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--------p~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--------PYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--------cCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 345667888999877666 799999999999874 666778899999996 99999999999999998877
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.07 E-value=0.00015 Score=52.70 Aligned_cols=98 Identities=11% Similarity=-0.051 Sum_probs=74.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhh-hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCC-
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGEN- 127 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~- 127 (303)
..|.|+.|+-....++.+.+.....-.|. ...++..+| ++++..++|..|...|++|+...+.+....
T Consensus 32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~la----------dalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHA----------DSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHH----------HHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999988865532222333 667888888 777999999999999999999876432111
Q ss_pred ----------------cHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 128 ----------------NVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 128 ----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
.+......+.+|.||..++++++|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 112236778899999999999999988764
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.03 E-value=3.5e-05 Score=51.02 Aligned_cols=68 Identities=22% Similarity=0.060 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc--HHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHH
Q psy4339 31 LQVAIAEDELAYALYVNEYSSGR--FTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108 (303)
Q Consensus 31 ~~~~~~~~~la~~~y~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 108 (303)
|+.+..+..+|.++| ...+. .++|..++++++++ +|....++..+| ..+...|+|++
T Consensus 3 p~~~~~~~~~a~al~---~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg----------~~~~~~g~y~~ 61 (93)
T 3bee_A 3 AVTATQLAAKATTLY---YLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIA----------NDHFISFRFQE 61 (93)
T ss_dssp CCCHHHHHHHHHHHH---HTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHH----------HHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHH----------HHHHHcCCHHH
Confidence 445678888888886 33332 79999999999998 677778888899 67799999999
Q ss_pred HHHHHHHHHHH
Q psy4339 109 AELLHQNALVL 119 (303)
Q Consensus 109 A~~~~~~al~~ 119 (303)
|+.+++++++.
T Consensus 62 Ai~~w~~~l~~ 72 (93)
T 3bee_A 62 AIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999885
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.96 E-value=0.0043 Score=49.66 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHH-----------hhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh-----cCHH
Q psy4339 129 VQTAKHYGNIGRLYQS-----------MQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM-----LEYH 192 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~-----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----g~~~ 192 (303)
+..+..++..|.+... .+...+|...+++|+++.. ......++..+|.+|. .. |+.+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP------~~~~GsA~~~LG~lY~-~vPp~~gGd~e 221 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWP------SYQEGAVWNVLTKFYA-AAPESFGGGME 221 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCT------THHHHHHHHHHHHHHH-HSCTTTTCCHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCC------CcccCHHHHHHHHHHH-hCCCccCCCHH
Confidence 4445555555555533 2345788888999988741 1235779999999995 74 9999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHh-hhcHHHHHHHHHHH
Q psy4339 193 KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYEC-LENFEKMTEFTNKL 262 (303)
Q Consensus 193 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~ 262 (303)
+|..+|++|+++.| + ....++...|..+.. +|++++|..+++.+
T Consensus 222 kA~~~ferAL~LnP------------------------~--~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 222 KAHTAFEHLTRYCS------------------------A--HDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHHHHHHHCC------------------------T--TCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC------------------------C--CCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999988 1 124457788998888 59999999966554
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.93 E-value=0.00033 Score=50.85 Aligned_cols=102 Identities=13% Similarity=-0.025 Sum_probs=77.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-------
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGE-NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD------- 169 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------- 169 (303)
......|.|+.|+-....++.+....... .+.....++..+|..++..++|..|...|++|+...+......
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 44478899999999999999887543211 1234567889999999999999999999999999876432111
Q ss_pred ----------chHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy4339 170 ----------DYEVGLSVGHLASLYNYHMLEYHKAEKLYFR 200 (303)
Q Consensus 170 ----------~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~ 200 (303)
.+....+.+.+|.||. .+|++++|+..++.
T Consensus 108 ~~ss~p~s~~~~~e~Elkykia~C~~-~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 108 NSASTPQSQCLPSEIEVKYKLAECYT-VLKQDKDAIAILDG 147 (167)
T ss_dssp ---------CCCCHHHHHHHHHHHHH-HTTCHHHHHHHHHT
T ss_pred ccCCCcccccccchHHHHHHHHHHHH-HHCCHHHHHHHHhc
Confidence 1122367789999998 99999999988754
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=0.0008 Score=48.44 Aligned_cols=86 Identities=7% Similarity=0.007 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhh---hHHHHHHHHHHHHHHHHHhhCCCc
Q psy4339 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ---FYKEAELLHQNALVLSLKHFGENN 128 (303)
Q Consensus 52 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~ 128 (303)
+....+.+.|.+.+.. .+....+..++|+++ ...+ +.++++..++..++. +.
T Consensus 12 ~~l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~L----------v~S~~~~~~~~gI~lLe~ll~~-------~~ 66 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCL----------VRSKYNDDIRKGIVLLEELLPK-------GS 66 (152)
T ss_dssp HHHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHH----------HTCSSHHHHHHHHHHHHHHHHH-------SC
T ss_pred HHHHHHHHHHHHHHcc--------CCCcHHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHhc-------CC
Confidence 3444555556555432 223557788888554 4544 888999999998884 23
Q ss_pred H-HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 129 V-QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 129 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
| ....+++++|..+.++|+|++|.+++++++++.
T Consensus 67 p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 67 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4 567889999999999999999999999999875
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.80 E-value=0.00084 Score=59.02 Aligned_cols=121 Identities=10% Similarity=-0.053 Sum_probs=87.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHH
Q psy4339 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT 131 (303)
Q Consensus 52 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 131 (303)
++.++|...|.+.... +-.|+ ..+++.+- ..|...|++++|.+++++..+. .-.| .
T Consensus 84 ~~l~~A~~lf~~M~~~------G~~Pd-~~tyn~lI----------~~~~~~g~~~~A~~l~~~M~~~------g~~P-d 139 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVD------KVVPN-EATFTNGA----------RLAVAKDDPEMAFDMVKQMKAF------GIQP-R 139 (501)
T ss_dssp HHHHHHHHHHHHHHHT------TCCCC-HHHHHHHH----------HHHHHHTCHHHHHHHHHHHHHT------TCCC-C
T ss_pred chHHHHHHHHHHHHHh------CCCCC-HHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHc------CCCC-c
Confidence 3467788877765432 12233 24555555 7778999999999999887652 1123 3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
..+|+.+-..|...|+.++|.+++++..+. +-.|+ ..++..+-.+|. +.|+.++|..++++.-+.
T Consensus 140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------G~~Pd-~~ty~~Li~~~~-~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 140 LRSYGPALFGFCRKGDADKAYEVDAHMVES------EVVPE-EPELAALLKVSM-DTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCC-HHHHHHHHHHHh-hCCCHHHHHHHHHHHHHh
Confidence 457888999999999999999999987642 22233 346788888998 999999999999987553
No 224
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.41 E-value=0.045 Score=46.13 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=82.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH-HHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV-GLS 176 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~ 176 (303)
..|...|+|.+|...+.+.++-+++. .+......++..-..+|..++++.++...+.+|..+....+ .+|.. +..
T Consensus 107 ~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~a~i 182 (394)
T 3txn_A 107 ALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQGAL 182 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHHHHH
Confidence 77799999999999999999987764 34567778899999999999999999999999998876542 34543 444
Q ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNY-HMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~-~~g~~~~A~~~~~~al~~~~ 206 (303)
...-|.++ . ..++|.+|-.+|-+++.-+.
T Consensus 183 ~~~~Gi~~-l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 183 DLQSGILH-AADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHH-HHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHH-HHhccCHHHHHHHHHHHHhccc
Confidence 44555555 4 58999999999999976554
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.36 E-value=0.0041 Score=43.09 Aligned_cols=91 Identities=16% Similarity=-0.033 Sum_probs=65.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHH---HHHHHHHHHHHHHHhcCCCch-HHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDE---AERMQLKAIAIKEKVLGKDDY-EVGLSV 177 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~ 177 (303)
.......+...|.+.+.. + +....+.+++|+++....+... ++.+++..+ ..+.| .....+
T Consensus 13 ~~~~l~~~~~~y~~e~~~-------~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~l 77 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-------G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYV 77 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-------S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcc-------C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHH
Confidence 344555666666665542 1 1345678899999998776654 555555543 34434 677889
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
+.+|..+. +.|+|++|..+++..+++.|++
T Consensus 78 Y~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 78 FYLAVGNY-RLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHHhCCCC
Confidence 99999995 9999999999999999998833
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.05 E-value=0.011 Score=42.02 Aligned_cols=90 Identities=14% Similarity=-0.010 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q psy4339 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186 (303)
Q Consensus 107 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 186 (303)
++-.+.|++|+..............+..+...|.. ...++.++|...|+.++.+. ...+.++...|..-.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h--------KkFAKiwi~~AqFEi- 105 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC--------KKFAFVHISFAQFEL- 105 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC--------TTBHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHH-
Confidence 77778888888864322122334567777788866 56799999999999999861 223788889999998
Q ss_pred hhcCHHHHHHHHHHHHHhhh
Q psy4339 187 HMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 187 ~~g~~~~A~~~~~~al~~~~ 206 (303)
++|+.+.|...+.+|+.+.+
T Consensus 106 Rqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 106 SQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HTTCHHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHhccCC
Confidence 99999999999999999887
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.04 E-value=0.14 Score=44.73 Aligned_cols=188 Identities=8% Similarity=-0.037 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q psy4339 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLH 113 (303)
Q Consensus 34 ~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~ 113 (303)
...+...+..+ ...|+.++|...|++|+.. . .+..+ ....+.. ...++ . +
T Consensus 213 ~~lW~~ya~~~----~~~~~~~~ar~i~erAi~~-P-----~~~~l---~~~y~~~-----------~e~~~---~---~ 262 (493)
T 2uy1_A 213 EEVYFFYSEYL----IGIGQKEKAKKVVERGIEM-S-----DGMFL---SLYYGLV-----------MDEEA---V---Y 262 (493)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH-C-----CSSHH---HHHHHHH-----------TTCTH---H---H
T ss_pred HHHHHHHHHHH----HHcCCHHHHHHHHHHHHhC-C-----CcHHH---HHHHHhh-----------cchhH---H---H
Confidence 56677777444 5889999999999999987 2 12211 1111100 01111 1 1
Q ss_pred HHHHHH---HHHhhC--CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 114 QNALVL---SLKHFG--ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 114 ~~al~~---~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
++.... .....+ ..++.....+...+......+..+.|...|++| .. . +. ....+...|.+-. ..
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~-~~---~~~v~i~~A~lE~-~~ 332 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----E-GV---GPHVFIYCAFIEY-YA 332 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----S-CC---CHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----C-CC---ChHHHHHHHHHHH-HH
Confidence 111111 100000 012233456777788888888899999999888 21 1 11 2234555566553 55
Q ss_pred c-CHHHHHHHHHHHHHhhhhhhhhhhhhhhh----hhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH-HHHHH
Q psy4339 189 L-EYHKAEKLYFRSIEINDNLKLFSASYSGL----EYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE-FTNKL 262 (303)
Q Consensus 189 g-~~~~A~~~~~~al~~~~~~~~~~~~~~~l----~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~ 262 (303)
| +.+.|...|+.+++..++.|.+...|..+ +...++-..+... +.....+......-...|+.+.+.+ +.++.
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~-~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL-EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6 58899999999998877666543333222 1122222111111 1123445555555566788888887 55555
No 228
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.62 E-value=0.23 Score=43.47 Aligned_cols=167 Identities=8% Similarity=-0.054 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKH 134 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 134 (303)
+.....|++++... |....++...+ ......|+.++|...|++|+.. . .....
T Consensus 196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya----------~~~~~~~~~~~ar~i~erAi~~-P-----~~~~l--- 248 (493)
T 2uy1_A 196 SRMHFIHNYILDSF--------YYAEEVYFFYS----------EYLIGIGQKEKAKKVVERGIEM-S-----DGMFL--- 248 (493)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHH-C-----CSSHH---
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHhC-C-----CcHHH---
Confidence 44567888877652 23345555556 4447889999999999999986 2 22221
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh-hhhh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG--KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN-LKLF 211 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~ 211 (303)
+...+... ..+ +...-+.++....+...+ ..++....++...+.... ..|..+.|...|.+| . .+. .+.+
T Consensus 249 ~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~-r~~~~~~AR~i~~~A-~-~~~~~~~v 321 (493)
T 2uy1_A 249 SLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL-KKRGLELFRKLFIEL-G-NEGVGPHV 321 (493)
T ss_dssp HHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHH-T-TSCCCHHH
T ss_pred HHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH-HcCCHHHHHHHHHHh-h-CCCCChHH
Confidence 21222211 111 111111111111111000 112334466778888887 889999999999999 3 221 1111
Q ss_pred hhhhhhh----h--------hhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHH
Q psy4339 212 SASYSGL----E--------YHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFT 259 (303)
Q Consensus 212 ~~~~~~l----~--------~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (303)
-.....+ + .+.++++.++ ..|. .+...+......|+.+.|...+
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~---~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTL---LKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHH---HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHH---HHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111 1 1223334332 2232 3445566677788888877543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.58 E-value=0.097 Score=36.19 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchh-hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH
Q psy4339 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL-LLTSAHRVKALILEEIALDSNELISVQFYKEAE 110 (303)
Q Consensus 32 ~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~ 110 (303)
....+.+++|+++ ....+... .++++.+++..+..+.| ....+++.+| ..+.+.|+|++|.
T Consensus 33 ~s~~~~F~yAw~L----v~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LA----------vg~yklg~Y~~A~ 94 (126)
T 1nzn_A 33 VSKSTQFEYAWCL----VRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLA----------VGNYRLKEYEKAL 94 (126)
T ss_dssp CCHHHHHHHHHHH----TTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHH----------HHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHH----HcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHH----------HHHHHhhhHHHHH
Confidence 4557899999888 45444333 23455555555544545 5778899999 7779999999999
Q ss_pred HHHHHHHHH
Q psy4339 111 LLHQNALVL 119 (303)
Q Consensus 111 ~~~~~al~~ 119 (303)
.+++..+++
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999996
No 230
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.049 Score=46.74 Aligned_cols=111 Identities=14% Similarity=-0.047 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
....+...+| ..|...|++++|.+.|.++..... ........+..+..++...+++..+..++.+
T Consensus 129 e~~~~~~~la----------~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 129 EQAQAWINLG----------EYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CCSSCCHHHH----------HHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3455667788 777999999999999999887542 2234567888889999999999999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 158 AIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 158 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+..+... +++..........-|.++. ..++|.+|-.+|..++....
T Consensus 194 a~~~~~~--~~d~~~~~~lk~~~gl~~l-~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 194 VNSMIEK--GGDWERRNRYKTYYGIHCL-AVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHTT--CCCTHHHHHHHHHHHHGGG-GTSCHHHHHHHHHHHHHHSC
T ss_pred HHHhhhc--CCCHHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHhccCC
Confidence 9877644 2333334455667788887 89999999999988875543
No 231
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=96.37 E-value=0.23 Score=38.04 Aligned_cols=102 Identities=12% Similarity=0.046 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy4339 56 ESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY 135 (303)
Q Consensus 56 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 135 (303)
+=...+...+.+..+.+-+........+-..|..|.-++. ...|+.+.|...|+.|.++.....++.||......
T Consensus 96 EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE-----~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLa 170 (227)
T 2o8p_A 96 DIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLE-----FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFI 170 (227)
T ss_dssp HHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHH-----TTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHH
T ss_pred HHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHH-----HccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHH
Confidence 3444566677777666555442233444445544432221 23455889999999999999877788888877777
Q ss_pred HHHHHHHHH-hhcHHHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQS-MQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 136 ~~la~~~~~-~~~~~~A~~~~~~al~~~ 162 (303)
.|.+.+|.. +++.++|..+.++|.++.
T Consensus 171 LNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 171 QNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 888887765 799999999999998764
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.30 E-value=0.17 Score=36.01 Aligned_cols=111 Identities=12% Similarity=-0.079 Sum_probs=73.8
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhhhhcccH------HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHH
Q psy4339 26 FGSENLQVAIAEDELAYALYVNEYSSGRF------TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNE 99 (303)
Q Consensus 26 ~~~~~~~~~~~~~~la~~~y~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~ 99 (303)
..+++|+....+..+- ...|+. ++-.+.|++|+..............+..+... ..
T Consensus 8 ~~p~~yd~W~~yl~ll-------E~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrY-----------A~ 69 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKL-------EKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRF-----------AE 69 (161)
T ss_dssp --CCSHHHHHHHHHHH-------HHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHH-----------HH
T ss_pred eCCCCHHHHHHHHHHH-------HHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH-----------HH
Confidence 3466776655554443 345777 77788888887763221001111122333333 33
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 100 LISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+...++.++|.+.|+.++.+ +...+.++...|.+-.++|+..+|.+.+.+|+.+.
T Consensus 70 ~~ei~D~d~aR~vy~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 70 LKAIQEPDDARDYFQMARAN--------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHCGGGCHHHHHHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 35668999999999999996 12238889999999999999999999999999853
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.39 Score=41.33 Aligned_cols=103 Identities=12% Similarity=-0.033 Sum_probs=79.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch-HHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGE-NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY-EVGL 175 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~ 175 (303)
..|...|++.+|...+.....-. .+. +.......+.....+|...+++.+|...+.++....... ..+| ..+.
T Consensus 145 ~i~e~~g~~~eA~~iL~~l~~Et---~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~ 219 (445)
T 4b4t_P 145 EIKKEEGKIDEAADILCELQVET---YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLE 219 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHH
Confidence 77799999999999998876432 222 334567788889999999999999999999986543332 2333 3456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+...|.++. ..++|.+|-.+|.+++....
T Consensus 220 ~~~~~~~~~~-~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 220 YYNLLVKISL-HKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHhccc
Confidence 6778899998 89999999999999987544
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.19 E-value=0.094 Score=36.49 Aligned_cols=69 Identities=12% Similarity=-0.065 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhcH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 131 TAKHYGNIGRLYQSMQKF---DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
...+.+++|+++....+. .+++.+++..+.. ++......++.+|..+. ++|+|++|..+.+..+++.|+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCC
Confidence 346788999999886544 4677777665542 22356788999999995 999999999999999999883
No 235
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=96.10 E-value=0.34 Score=37.46 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
.-.+.|...|++|.++.+....+.||.......|.+.+|.. +++.++|..+.++|.+-
T Consensus 144 ~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 144 EAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34468899999999999877888999888888899988877 79999999988887754
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.56 Score=40.36 Aligned_cols=113 Identities=11% Similarity=0.011 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCc-chhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPE-NHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~ 111 (303)
.+.....|+..+ ...|++.+|.+.+.....- ..+. +.......+.... ..+...+++..|..
T Consensus 136 rarl~~~La~i~----e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kve~~l~q~----------rl~l~~~d~~~a~~ 198 (445)
T 4b4t_P 136 RARVTKDLVEIK----KEEGKIDEAADILCELQVE---TYGSMEMSEKIQFILEQM----------ELSILKGDYSQATV 198 (445)
T ss_dssp HHHHHHHHHHHH----HHHTCHHHHHHHHHHHHHH---HCSSSCHHHHHHHHHHHH----------HHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHH----HHccCHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHH----------HHHHHCCCHHHHHH
Confidence 456677889777 6999999999999886532 2232 2333555555555 67789999999999
Q ss_pred HHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 112 LHQNALVLSLKHFGENNV-QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 112 ~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+.++....... ..+| .....+...|.++...++|.+|-.+|.++......
T Consensus 199 ~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 199 LSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 999986543332 3344 34567788899999999999999999999876543
No 237
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=96.09 E-value=0.21 Score=39.10 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
-.+.|...|++|.++.....++.+|.......|.+.+|.. +++.++|..+.++|.+-
T Consensus 171 ~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 171 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3478899999999998887888999888888899988877 79999999988887654
No 238
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.05 Score=46.69 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~ 209 (303)
....+...+|..|...|++++|.+++.++.... .+ .......+..+..++. ..+++..+..++.++-....
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~--~~~kid~~l~~irl~l-~~~d~~~~~~~~~ka~~~~~--- 199 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---IS--TGAKIDVMLTIARLGF-FYNDQLYVKEKLEAVNSMIE--- 199 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TC--CCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CC--hHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhh---
Confidence 345567899999999999999999999987654 22 2345677888888887 89999999999999987665
Q ss_pred hhhhhhhhhhhhHHHHhhhcccccc-HHHHHHhHHHHHHhhhcHHHHHH-HHHH
Q psy4339 210 LFSASYSGLEYHYRDLKLFSASYSG-LEYDYRGLIHVYECLENFEKMTE-FTNK 261 (303)
Q Consensus 210 ~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~-~~~~ 261 (303)
...++. .......-|.++...++|.+|.. |++.
T Consensus 200 -------------------~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 200 -------------------KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp -------------------TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred -------------------cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 122222 22334445666677788888877 4444
No 239
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=96.02 E-value=0.24 Score=38.55 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
.-.+.|...|++|.++....+++.||.......|.+.+|+. +++.++|..+.++|.+-
T Consensus 145 ~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 145 TVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33578899999999999887888999888888889888877 79999999988887654
No 240
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=96.01 E-value=0.41 Score=37.59 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
.-.+.|...|+.|.++.+..+.+.||.......|.+.+|+. +++.++|..+.++|.+-
T Consensus 149 ~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 149 EAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33468899999999999877888999888888899988877 79999999888877643
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.91 E-value=0.13 Score=36.35 Aligned_cols=72 Identities=13% Similarity=-0.062 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhcH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 130 QTAKHYGNIGRLYQSMQKF---DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
....+.+++|+++....+. .+++.+++..+.. .+......++.+|..+. ++|+|++|..+.+..+++.|
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCC
Confidence 3456788999999886654 4677777766542 22246678999999995 99999999999999999988
Q ss_pred hhh
Q psy4339 207 NLK 209 (303)
Q Consensus 207 ~~~ 209 (303)
++.
T Consensus 109 ~n~ 111 (144)
T 1y8m_A 109 NNK 111 (144)
T ss_dssp CCH
T ss_pred CcH
Confidence 433
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.2 Score=45.92 Aligned_cols=124 Identities=11% Similarity=-0.093 Sum_probs=79.8
Q ss_pred hhh-HHHHHHHHHHHHHHHHHhhCCCcHHHHHHH--HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc---CCC-------
Q psy4339 103 VQF-YKEAELLHQNALVLSLKHFGENNVQTAKHY--GNIGRLYQSMQKFDEAERMQLKAIAIKEKVL---GKD------- 169 (303)
Q Consensus 103 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~------- 169 (303)
.++ ++.|+..+++.... .|.....+ ..++.+.....+--+|+..+.++++-..... ...
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 444 57788888875553 23222111 1122222222344578888888775432111 111
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
.|.....+..-+..+. ..|+++-|+.+.++|+...| ....+|..|+.+|..+
T Consensus 333 ~~~~~~LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aP---------------------------seF~tW~~La~vYi~l 384 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLL-NRGDYELALGVSNTSTELAL---------------------------DSFESWYNLARCHIKK 384 (754)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCS---------------------------SCHHHHHHHHHHHHHT
T ss_pred cCcchHHHHHHHHHHh-ccCcHHHHHHHHHHHHhcCc---------------------------hhhHHHHHHHHHHHHh
Confidence 1223345666788887 89999999999999999888 4556799999999999
Q ss_pred hcHHHHHHHHHHH
Q psy4339 250 ENFEKMTEFTNKL 262 (303)
Q Consensus 250 g~~~~A~~~~~~~ 262 (303)
|+++.|+-.+...
T Consensus 385 ~d~e~ALLtLNSc 397 (754)
T 4gns_B 385 EEYEKALFAINSM 397 (754)
T ss_dssp TCHHHHHHHHHHS
T ss_pred ccHHHHHHHHhcC
Confidence 9999999755444
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.4 Score=44.00 Aligned_cols=88 Identities=11% Similarity=-0.075 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHhh---CCCc-------HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH
Q psy4339 105 FYKEAELLHQNALVLSLKHF---GENN-------VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG 174 (303)
Q Consensus 105 ~~~~A~~~~~~al~~~~~~~---~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 174 (303)
+--+|+....++++...... ...+ +.....+.--+.++...|+++-|+++.++|+... |...
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF 371 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSF 371 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhh
Confidence 44567888877775432211 1111 2223355566888999999999999999999875 6667
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHH
Q psy4339 175 LSVGHLASLYNYHMLEYHKAEKLYFRS 201 (303)
Q Consensus 175 ~~~~~la~~~~~~~g~~~~A~~~~~~a 201 (303)
.+|..|+.+|. .+|+|+.|+-.++-+
T Consensus 372 ~tW~~La~vYi-~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 372 ESWYNLARCHI-KKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HhccHHHHHHHHhcC
Confidence 88999999999 999999999887654
No 244
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=95.50 E-value=0.68 Score=36.36 Aligned_cols=107 Identities=14% Similarity=-0.015 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHhhCCcc--hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh--CCCcHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPEN--HLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF--GENNVQ 130 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~ 130 (303)
++=...+...+.+....+-+. ++.....+-..|..+.-++.....-.+..-.+.|...|++|.++.++.. .+.+|.
T Consensus 115 ~EL~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPi 194 (268)
T 3efz_A 115 ESILLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPL 194 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChH
Confidence 345556677777776654332 2222333444454443332111000222335788999999999998777 788998
Q ss_pred HHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 131 TAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 131 ~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
......|.+.+|+. +++.++|..+.++|.+-
T Consensus 195 RLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 195 YLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888899988875 79999999999988765
No 245
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=95.43 E-value=0.71 Score=36.20 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHH
Q psy4339 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQS-MQKFDEAERMQLKAIAI 161 (303)
Q Consensus 104 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 161 (303)
.-.+.|...|++|.++. ..+.+.||.......|.+.+|+. +++.++|..+.++|.+-
T Consensus 170 ~~~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 170 SSAEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34568899999999999 77788899888888899988877 79999999998888754
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.17 E-value=0.41 Score=33.73 Aligned_cols=71 Identities=7% Similarity=-0.112 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 157 (303)
....+.++.|+.+ .--....+..+++..++..+.. ++...-..++.||..+.++|+|++|..+.+.
T Consensus 37 vs~~t~F~YAw~L-------v~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 37 ATIQSRFNYAWGL-------IKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp SCHHHHHHHHHHH-------HHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3557777788655 2223445666788888776662 2224567889999999999999999999999
Q ss_pred HHHHH
Q psy4339 158 AIAIK 162 (303)
Q Consensus 158 al~~~ 162 (303)
.+++.
T Consensus 103 lL~~e 107 (144)
T 1y8m_A 103 LFEHE 107 (144)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 98864
No 247
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.93 E-value=0.18 Score=43.96 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++..||.+......++.|..+|.+|..+. |..+..++.||.+.. ..|+.-+|.-+|-+++....
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~ 217 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCC
Confidence 466789999999999999999999999875 778889999999998 89999999999999997654
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.92 E-value=0.59 Score=32.48 Aligned_cols=70 Identities=7% Similarity=-0.108 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 79 LTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
...+..+.|+.+ ..-....+..+++..++..+.. ++...-..++.||..+.++|+|++|..+.+..
T Consensus 39 s~qt~F~yAw~L-------v~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 39 TIQSRFNYAWGL-------IKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp CHHHHHHHHHHH-------HHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChhhHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456777778655 2223445666788888776652 23356788999999999999999999999999
Q ss_pred HHHH
Q psy4339 159 IAIK 162 (303)
Q Consensus 159 l~~~ 162 (303)
+++.
T Consensus 105 L~~e 108 (134)
T 3o48_A 105 FEHE 108 (134)
T ss_dssp HTTC
T ss_pred HhhC
Confidence 8753
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.88 E-value=0.46 Score=45.02 Aligned_cols=94 Identities=11% Similarity=-0.072 Sum_probs=70.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 177 (303)
..|++.|+.++|...|.+..+...+-. .| ...+|+.|-..|++.|++++|.++|++..+. +-.|++ .+|
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~---~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------G~~PDv-vTY 203 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRK---LL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA------GLTPDL-LSY 203 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHT---TC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCCH-HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCC---CC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCcH-HHH
Confidence 788999999999999987655432211 22 2457999999999999999999999987642 233543 456
Q ss_pred HHHHHHHHHhhcC-HHHHHHHHHHHHH
Q psy4339 178 GHLASLYNYHMLE-YHKAEKLYFRSIE 203 (303)
Q Consensus 178 ~~la~~~~~~~g~-~~~A~~~~~~al~ 203 (303)
+.+-..+. +.|+ .++|..++++...
T Consensus 204 ntLI~glc-K~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 204 AAALQCMG-RQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHH-HHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCcHHHHHHHHHHHHH
Confidence 77777776 7887 4788899888765
No 250
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=94.87 E-value=0.96 Score=34.62 Aligned_cols=94 Identities=7% Similarity=-0.088 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 113 HQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM-----QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 113 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
+...+.+..+.+-|........+-..|..|... |+.+.|...|+.|.++..+..++.||-......|.+..|..-
T Consensus 101 C~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEI 180 (227)
T 2o8p_A 101 LQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEK 180 (227)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH
Confidence 334444444433333322333444566666543 456899999999999998777788887666667777766326
Q ss_pred hcCHHHHHHHHHHHHHhhh
Q psy4339 188 MLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~~ 206 (303)
+++.++|..+.++|+.+..
T Consensus 181 ln~p~~Ac~lAk~Afd~~~ 199 (227)
T 2o8p_A 181 YGEKKQVFNMLNSLGKILE 199 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 7999999999999988764
No 251
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.48 E-value=0.29 Score=42.63 Aligned_cols=63 Identities=8% Similarity=-0.193 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q psy4339 35 IAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQ 114 (303)
Q Consensus 35 ~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~ 114 (303)
.++..||.+. +....++.|..+|.+|..+ .|..+..++.+| .+....|+.-+|+-+|.
T Consensus 153 r~l~~LGDL~----RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLa----------vla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 153 HCLVHLGDIA----RYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLA----------ILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHH----HHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHH----------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcccHH----HHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHH----------HHHhcccccHHHHHHHH
Confidence 4667788655 6788899999999999998 677889999999 44477888999999999
Q ss_pred HHHHH
Q psy4339 115 NALVL 119 (303)
Q Consensus 115 ~al~~ 119 (303)
+++..
T Consensus 211 rsl~~ 215 (497)
T 1ya0_A 211 RSIAV 215 (497)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 88763
No 252
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.43 E-value=0.72 Score=42.61 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=34.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 158 (303)
...|++++|.+..+. .++ ...+..+|..+...++++.|+.+|.++
T Consensus 663 l~~~~~~~A~~~~~~----------~~~---~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD----------ESA---EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT----------CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh----------hCc---HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 567777777776422 122 246889999999999999999999886
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.42 E-value=1 Score=42.73 Aligned_cols=103 Identities=5% Similarity=-0.039 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~ 208 (303)
.....+|+.+-..|++.|+.++|..+|.+..+...+-. .|+ ..+|+.+-..|. +.|+.++|.++|++.....-
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glc-k~G~~~eA~~Lf~eM~~~G~-- 196 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWA-RQGAFKELVYVLFMVKDAGL-- 196 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTC--
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC--
Confidence 34556899999999999999999999987655433321 233 357888888997 99999999999998764322
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcH-HHHHHHHHHH
Q psy4339 209 KLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENF-EKMTEFTNKL 262 (303)
Q Consensus 209 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~ 262 (303)
.|+. .+|..+-..+.+.|+. ++|.++++.+
T Consensus 197 -----------------------~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 197 -----------------------TPDL-LSYAAALQCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp -----------------------CCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred -----------------------CCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 2333 4466677778888874 5676655444
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.1 Score=45.31 Aligned_cols=141 Identities=12% Similarity=0.007 Sum_probs=62.8
Q ss_pred hhcccHHHHHHHHHHHH--HHHHhhCCcc--hhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH----------HHHH
Q psy4339 49 YSSGRFTESRRHAEKAI--QTFKNLLPEN--HLLLTSAHRVKALILEEIALDSNELISVQFYKEAE----------LLHQ 114 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al--~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~----------~~~~ 114 (303)
...+++++|..+-...+ +..... ... ++-.+.+|+..+ .++...|+..... ..+.
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~-nrrtlD~l~ak~~fY~s----------~~~e~~~~~~~~~~~~~~~~~ir~~Ll 215 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYY-NLRSLNLINAKLWFYIY----------LSHETLARSSEEINSDNQNIILRSTMM 215 (523)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHTHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHHHH-hHHhHHHHHHHHHHHHH----------HHHHHhcccccccccccchhhHHHHHH
Confidence 57889999988887665 222111 111 222344444444 3334445444322 1222
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHH
Q psy4339 115 NALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194 (303)
Q Consensus 115 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A 194 (303)
.++... .+..|....+..++.+-..|...+.++.|..+..++.-. .. ...+...+.-++.+|.++. -+++|.+|
T Consensus 216 ~~~rta--~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a-~q~~Y~eA 289 (523)
T 4b4t_S 216 KFLKIA--SLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINA-IQLDYSTA 289 (523)
T ss_dssp HHHHHC--CSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHH--hcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 222221 122344456677888899999999999999999887410 00 0123455777889999998 99999999
Q ss_pred HHHHHHHHHhhh
Q psy4339 195 EKLYFRSIEIND 206 (303)
Q Consensus 195 ~~~~~~al~~~~ 206 (303)
.+++..|+..+|
T Consensus 290 ~~~L~~A~rkap 301 (523)
T 4b4t_S 290 NEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHTSSCS
T ss_pred HHHHHHHHHhCC
Confidence 999999998776
No 255
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.62 E-value=1.5 Score=32.17 Aligned_cols=46 Identities=9% Similarity=-0.090 Sum_probs=36.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAI 159 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 159 (303)
...|+++.|.+..+.. + ....|..||......|+++-|+.+|+++-
T Consensus 16 L~lg~l~~A~e~a~~l----------~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL----------N---DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH----------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh----------C---CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 7789999998876542 1 23468899999999999999999998864
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.57 E-value=2.5 Score=34.33 Aligned_cols=130 Identities=10% Similarity=-0.031 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..|+|=+|.+.++.....+.+. .+...-...+..-+..+.+.|++..|.++..-.++.+++..-+ + .......+.
T Consensus 25 ~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~--~-~~~~~~rl~ 99 (312)
T 2wpv_A 25 KAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVK--V-DDISVARLV 99 (312)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--C-SHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC--C-CHHHHHHHH
Confidence 3445555555544444333221 1223333444444555555566666665555555555543111 1 122334455
Q ss_pred HHHHHhhcCHH-HHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHH
Q psy4339 182 SLYNYHMLEYH-KAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTE 257 (303)
Q Consensus 182 ~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (303)
.++. ....-+ +=..+.+++++... + .+......+..+..+|..|...|++.+|..
T Consensus 100 ~l~~-~~p~~~~~r~~fi~~ai~WS~-------------------~-~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 100 RLIA-ELDPSEPNLKDVITGMNNWSI-------------------K-FSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHT-TCCTTCTTHHHHHHHHHHHHH-------------------H-TSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHH-HCCCCCchHHHHHHHHHHHHh-------------------h-cCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 5543 322111 12345555555544 1 111111223346667777777777777666
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.48 E-value=3 Score=35.04 Aligned_cols=111 Identities=12% Similarity=0.059 Sum_probs=74.7
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchh--hhHHH-HHHHHHH----HHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHL--LLTSA-HRVKALI----LEEIALDSNELISVQFYKEAELLHQNALVLSLK 122 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~-~~~la~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 122 (303)
..|+.+.|...+.+|+.++.-.+-.+.+ .+... ...+... ..... ..+...|++.+|+..+..++..
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~---~~~l~~g~~~~a~~~l~~~~~~--- 200 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKA---EAEIACGRASAVIAELEALTFE--- 200 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHh---
Confidence 4578899999999999886432212111 11111 1111111 11111 5668899999999999988775
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 123 HFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 123 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
+|..-..+..+-.++...|+..+|+..|+++......-+|-++.
T Consensus 201 -----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 201 -----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp -----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45555578888999999999999999999998887766665543
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.03 E-value=1.5 Score=36.82 Aligned_cols=93 Identities=12% Similarity=-0.098 Sum_probs=65.7
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcCC---Cch-----------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 142 YQSMQKFDEAERMQLKAIAIKEKVLGK---DDY-----------EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 142 ~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~-----------~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
....|+.+.|...+.+|+.+++.-+-. ..+ ....+...++..+. ..|++++|+..+.+++...|
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P- 202 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHP- 202 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST-
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC-
Confidence 334578888888888888776321101 001 12234556778887 89999999999999887766
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 208 LKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 208 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
..-..+..+-.++...|+..+|++.++.+
T Consensus 203 --------------------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 203 --------------------------YREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp --------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33345778888999999999999965554
No 259
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.45 E-value=1.9 Score=39.83 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=30.3
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 116 (303)
..|++++|.+..+. .+++ ..+..+| ..+...|+++.|+.+|.++
T Consensus 664 ~~~~~~~A~~~~~~----------~~~~---~~W~~la----------~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTD----------ESAE---MKWRALG----------DASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTT----------CCCH---HHHHHHH----------HHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh----------hCcH---hHHHHHH----------HHHHHcCCHHHHHHHHHHc
Confidence 57888888877532 1223 4555666 5558888888888888875
No 260
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=92.39 E-value=3 Score=32.17 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=52.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFK 69 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~ 69 (303)
++-+.+++...|+.|.++.+..+++.||-......+.+.-|| ...++.++|....++|.+-.-
T Consensus 145 r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyy---Eiln~~~~Ac~lAk~Afd~Ai 207 (236)
T 3iqu_A 145 KKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHY---EIANSPEEAISLAKTTFDEAM 207 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH---HTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHH
Confidence 455788999999999999998899999988878888886666 688999999999888876543
No 261
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=92.13 E-value=3.4 Score=32.14 Aligned_cols=74 Identities=11% Similarity=-0.034 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy4339 133 KHYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSI 202 (303)
Q Consensus 133 ~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al 202 (303)
..+-..|..|...-. .+.|...|++|.++.....++.||-......|.+..|..-+++.++|..+.++|+
T Consensus 122 FY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 122 FYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334456666655422 3678999999999998888899998888788888777424799999999998887
Q ss_pred Hhhh
Q psy4339 203 EIND 206 (303)
Q Consensus 203 ~~~~ 206 (303)
.-.-
T Consensus 202 d~Ai 205 (248)
T 3uzd_A 202 DDAI 205 (248)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 262
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.89 E-value=2.8 Score=30.63 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=65.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH--HH--------HHhcCCC
Q psy4339 100 LISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA--IK--------EKVLGKD 169 (303)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~--------~~~~~~~ 169 (303)
..-.|+|..|+-.+.+ .....+..--+.||...++|.+|+.++++.++ +. -+.+--+
T Consensus 43 LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 43 LYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp HHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred hhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 3667888877766532 12344556678899999999999999999872 11 1111112
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+.-..+..+|.++. ..|+.+||+.++.....+.+
T Consensus 110 ~~DkEfFy~l~a~llt-q~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 110 PGDEEFFESLLGDLCT-LSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp TTCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHH-HhcCHHHhhhHhhhhcCCcc
Confidence 2233345678899998 99999999999999887665
No 263
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=90.82 E-value=1.4 Score=34.65 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=52.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHH
Q psy4339 4 KKILLKNLSLCSQLALKLKQVLF--GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQT 67 (303)
Q Consensus 4 ~~~~l~~a~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~ 67 (303)
++.+.+++...|+.|.++.+..+ ++.||-......|.+.-|| ...++.++|....++|.+-
T Consensus 164 rk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyY---EIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 164 KNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKY---DLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHH---TTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhh
Confidence 45678899999999999998888 8899988778888886666 6899999999999998876
No 264
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.20 E-value=4.2 Score=29.71 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=60.5
Q ss_pred hcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH--HH------
Q psy4339 50 SSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVL--SL------ 121 (303)
Q Consensus 50 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~------ 121 (303)
..|.|..|+-++.. ...+.+.+--+ -+|...++|..|+..+++.++- -+
T Consensus 45 yngEY~R~Lf~L~~-------------lNT~Ts~YYk~----------LCy~klKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 45 LNGEYTRALFHLHK-------------LNTCTSKYYES----------LCYKKKKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp HTTCHHHHHHHHHT-------------CCBHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred hcchHhHHHHHHHh-------------cchHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 67888777655532 23445555556 5568999999999999998832 10
Q ss_pred --HhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 122 --KHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 122 --~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+..--++.+.--.+..+|.++...|+.+||+.++......
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 0000112233446788999999999999999999887654
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.92 E-value=7.6 Score=37.80 Aligned_cols=102 Identities=13% Similarity=-0.020 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhC---------------CcchhhhHHHHHHHHHHHHHHhhhhHHHH
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLL---------------PENHLLLTSAHRVKALILEEIALDSNELI 101 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~~~~~~~~~ 101 (303)
.+-+|.++ ...|++++|..+|++|-....... .........-|..+. ..+.
T Consensus 845 ~yl~g~~~----L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~----------~LFe 910 (1139)
T 4fhn_B 845 VYLKALIY----LKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLS----------KKLF 910 (1139)
T ss_dssp HHHHHHHH----HHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHH----------HHHH
T ss_pred HHHHHHHH----HhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHH----------HHHH
Confidence 47788777 699999999999988742211000 000001222334444 5557
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGENNVQ-TAKHYGNIGRLYQSMQKFDEAERMQL 156 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 156 (303)
..|.++.+++..+.|++.. +++++. ....+.++=..+...|+|++|...+.
T Consensus 911 ~~~~~~~vi~fa~lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 911 EESAYIDALEFSLLADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HTSCCHHHHHHHHHHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 7788888888888888752 233333 33467777788888899988877664
No 266
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.71 E-value=0.76 Score=40.03 Aligned_cols=137 Identities=10% Similarity=0.010 Sum_probs=55.8
Q ss_pred HhhhhHHHHHHHHHHHHH--HHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH-------HHHHHHHHh-cCCC
Q psy4339 101 ISVQFYKEAELLHQNALV--LSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL-------KAIAIKEKV-LGKD 169 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~--~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-------~al~~~~~~-~~~~ 169 (303)
...+++++|..+-...+. ..... ...-++..+.+|+..+.++...|+..+...... ..+...+.. ...+
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 667889998888776652 22111 001133455667777777777777665432211 122222222 2344
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECL 249 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 249 (303)
....+..++.+-+.|. ..+.++.|..+..++. .| .. .......+.-++.+|.++.-+
T Consensus 227 ~~~qa~l~nllLRnYL-~~~~y~qA~~lvsk~~--fP-------------------~~-~~sn~q~~rY~YY~GRI~a~q 283 (523)
T 4b4t_S 227 NETKAMLINLILRDFL-NNGEVDSASDFISKLE--YP-------------------HT-DVSSSLEARYFFYLSKINAIQ 283 (523)
T ss_dssp SCHHHHHHHHHHHHHH-HSSCSTTHHHHHHHHC--SC-------------------TT-TSCHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHH-ccCcHHHHHHHHhcCc--CC-------------------cc-cCCHHHHHHHHHHHHHHHHHh
Confidence 4556777888999998 9999999999999874 33 11 112234566678899999999
Q ss_pred hcHHHHHHHHH
Q psy4339 250 ENFEKMTEFTN 260 (303)
Q Consensus 250 g~~~~A~~~~~ 260 (303)
++|.+|.+++.
T Consensus 284 ~~Y~eA~~~L~ 294 (523)
T 4b4t_S 284 LDYSTANEYII 294 (523)
T ss_dssp TCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 99999998543
No 267
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=89.52 E-value=7.8 Score=31.88 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++..|.+|+...+..++..| ...|.-+|.++++.+++.+|+..+-+|-...+.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 78999999999888765444 234677899999999999999999998777644
No 268
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=88.78 E-value=6.8 Score=30.20 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 134 ~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
.+-..|..|...-. .+.|...|++|.++.....++.||-......|.+..|..-.++.++|..+.++|+.
T Consensus 125 Y~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 125 YLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456776655422 46789999999999988888999988887788887774256999999999888876
Q ss_pred hhh
Q psy4339 204 IND 206 (303)
Q Consensus 204 ~~~ 206 (303)
-.-
T Consensus 205 ~Ai 207 (236)
T 3iqu_A 205 EAM 207 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 269
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.37 E-value=10 Score=31.82 Aligned_cols=103 Identities=6% Similarity=-0.107 Sum_probs=71.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCC---------CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCch
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGE---------NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 171 (303)
....+.++|.+.+.+......+.... .......+...++..|...|+.++|..+++++-.......+.+..
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 55678889998888765433222111 112344566788999999999999999999998887775444444
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
..+..+...+..+. ..+++..+....-..+..
T Consensus 167 v~~~~y~~~~~~~~-~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 167 ITNSFYSTNSQYFK-FKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhh
Confidence 45566666777777 888988877666666543
No 270
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=88.33 E-value=7.9 Score=30.36 Aligned_cols=73 Identities=10% Similarity=-0.082 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 134 ~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
.+-..|..|...-. .+.|...|++|.++.....++.||.......|.+..|..-+++.++|..+.++|+.
T Consensus 127 Y~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 127 YLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455666655433 35789999999999988788999988877888888774247999999999998886
Q ss_pred hhh
Q psy4339 204 IND 206 (303)
Q Consensus 204 ~~~ 206 (303)
-.-
T Consensus 207 ~Ai 209 (260)
T 1o9d_A 207 EAI 209 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 271
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=88.26 E-value=7.4 Score=30.00 Aligned_cols=73 Identities=11% Similarity=-0.073 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 134 HYGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 134 ~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
.+-..|..|...-. .++|...|++|.++.+...++.||.......|.+..|..-.++.++|..+.++|+.
T Consensus 122 y~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 122 YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455666654332 35789999999999988888999988877788887774247999999999998887
Q ss_pred hhh
Q psy4339 204 IND 206 (303)
Q Consensus 204 ~~~ 206 (303)
-.-
T Consensus 202 ~Ai 204 (234)
T 2br9_A 202 DAI 204 (234)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 272
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=88.24 E-value=7.9 Score=30.29 Aligned_cols=72 Identities=11% Similarity=-0.064 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 135 YGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 135 ~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+-..|..|...-. .+.|...|++|.++.....++.||-......|.+..|..-+++.++|..+.++|+.-
T Consensus 149 ~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 149 YKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3356666655422 367899999999999888889999888888888887742479999999999888765
Q ss_pred hh
Q psy4339 205 ND 206 (303)
Q Consensus 205 ~~ 206 (303)
.-
T Consensus 229 Ai 230 (261)
T 3ubw_A 229 AI 230 (261)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 273
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=87.12 E-value=9.4 Score=29.92 Aligned_cols=71 Identities=11% Similarity=-0.031 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 135 YGNIGRLYQSMQK----------FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 135 ~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+-..|..|...-. .++|...|++|.++. ...++.||-......|.+..|..-+++.++|..+.++|+.-
T Consensus 149 ~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 149 FKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445666654432 357899999999999 77888899887777888887742479999999999998875
Q ss_pred hh
Q psy4339 205 ND 206 (303)
Q Consensus 205 ~~ 206 (303)
.-
T Consensus 228 Ai 229 (260)
T 2npm_A 228 AI 229 (260)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 274
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=87.03 E-value=13 Score=31.32 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 109 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
++..|.+|+...+..++..| ...|.-+|.++++.+++.+|+..+-+|-...+.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 58899999999887765444 335677899999999999999999998777654
No 275
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.03 E-value=14 Score=29.93 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=53.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHH-HHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD-EAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 179 (303)
.+.|++..|.+...-.++.+.+...+ ........+..++.....-+ .=.++.++++.-..+. |.........+..
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~---~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ 139 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVK---VDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNT 139 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCC---CSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHH
Confidence 45556666666555555555543111 11223344444443322111 2255667777765554 2222233456889
Q ss_pred HHHHHHHhhcCHHHHHHHHH
Q psy4339 180 LASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 180 la~~~~~~~g~~~~A~~~~~ 199 (303)
+|..|. ..|++.+|..+|-
T Consensus 140 ~a~~~~-~e~~~~~A~~H~i 158 (312)
T 2wpv_A 140 IGSKLL-EGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHh-hcCCHHHHHHHHH
Confidence 999997 9999999999884
No 276
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.03 E-value=5.6 Score=29.19 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=37.3
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 143 QSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 143 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
...|+++.|.+..++. + ....|..||..-. ..|+++-|+.+|.++-...
T Consensus 16 L~lg~l~~A~e~a~~l----------~---~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~~D~~ 64 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL----------N---DSITWERLIQEAL-AQGNASLAEMIYQTQHSFD 64 (177)
T ss_dssp HHTTCHHHHHHHHHHH----------C---CHHHHHHHHHHHH-HTTCHHHHHHHHHHTTCHH
T ss_pred HhcCCHHHHHHHHHHh----------C---CHHHHHHHHHHHH-HcCChHHHHHHHHHhCCHH
Confidence 5678888888876542 1 2346889999998 9999999999998865443
No 277
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=82.94 E-value=4.3 Score=25.92 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
..+..+...|..+...|+|++|+++.++|.......
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999998765543
No 278
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=80.06 E-value=5.6 Score=25.43 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+..+...+..+. ..|+|++||++.+++.....
T Consensus 13 n~AH~~~RrAe~ll-~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 13 NLAHQQSRRADRLL-AAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHH-hcCCHHHHHHHHHHHHHHHH
Confidence 34556677889998 99999999999999987665
No 279
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=78.32 E-value=30 Score=29.19 Aligned_cols=54 Identities=7% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 108 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.+...|++|+...+..+...+ ...|..+|..+.+.+++.+|+.++-++-.....
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 468899999999888765444 345778899999999999999999998776644
No 280
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.15 E-value=6.6 Score=38.20 Aligned_cols=71 Identities=10% Similarity=-0.057 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHH-------------hc--CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEK-------------VL--GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------------~~--~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
.+-+|.++...|++++|..+|++|-.-... .. .........-|..+..++. ..|-++.+++..+
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe-~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF-EESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHH-HTSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 367999999999999999999887321100 00 0000112234667778886 8899999999999
Q ss_pred HHHHhhh
Q psy4339 200 RSIEIND 206 (303)
Q Consensus 200 ~al~~~~ 206 (303)
.|++..+
T Consensus 924 lAi~~~~ 930 (1139)
T 4fhn_B 924 LADASKE 930 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHHhcc
Confidence 9988765
No 281
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.88 E-value=39 Score=28.32 Aligned_cols=103 Identities=15% Similarity=0.037 Sum_probs=68.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhCCc--------ch-hhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q psy4339 49 YSSGRFTESRRHAEKAIQTFKNLLPE--------NH-LLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVL 119 (303)
Q Consensus 49 ~~~g~~~~A~~~~~~al~~~~~~~~~--------~~-~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 119 (303)
....+.++|+.++++.........+. .+ .....+...++ ..|...|+.++|..+++++-..
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~----------~~yl~~~d~~~a~~~l~~~~~~ 156 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIA----------RTYLLKNDLVKARDLLDDLEKT 156 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHH----------HHHHHHSCHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHh
Confidence 36678899999888764433221110 01 11233444455 6678999999999999999988
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 120 SLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
.....+.+.......+...+..|...+++..+....-..+..
T Consensus 157 l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 157 LDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 776544444556667777788888889988877666655543
No 282
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=73.69 E-value=6.2 Score=24.11 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..+|.-+...|++++|..+|-+|+.++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999998875
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.55 E-value=31 Score=27.16 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=69.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH---------------
Q psy4339 100 LISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK--------------- 164 (303)
Q Consensus 100 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------------- 164 (303)
....|..++|+......++. +|..+.....+-..++-.|++++|.+-++-+.++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 36789999999999888883 5666777788899999999999999888766554211
Q ss_pred -----h---------cCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 165 -----V---------LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 165 -----~---------~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+ .+. ++. .....--+.... ..|+.++|..+-.++++..+
T Consensus 79 ~~R~~vfaG~~~P~~~g~-~~~-w~~~ll~Al~~~-~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGE-NEE-LTKSLVSFNLSM-VSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp HHHHHHTTSCCCEECCCS-CHH-HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCCCCCCC-CHH-HHHHHHHHHHHh-hcCCHHHHHHHHHHHHhcCc
Confidence 0 122 222 222333344454 68999999999999998876
No 284
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=73.45 E-value=10 Score=24.55 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
..+|..+...|+++.|+.+|-+|+.++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999886
No 285
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=71.88 E-value=10 Score=23.83 Aligned_cols=27 Identities=19% Similarity=0.016 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 179 HLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 179 ~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..|.-.. ..|++++|+.+|.++++...
T Consensus 24 ~~Ave~D-~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 24 INAVKAD-KEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence 3444555 89999999999999998776
No 286
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=71.30 E-value=46 Score=28.68 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcH
Q psy4339 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF 148 (303)
Q Consensus 106 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 148 (303)
-++|+++|++|+..+++....+++.....+.+++..|...|+|
T Consensus 448 A~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 448 AQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 4578888888888888776677777777777777666555553
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.54 E-value=25 Score=25.38 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 110 ELLHQNALVLSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 110 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
...+++++..+... .-.+++....++...+... +++.+.|.-... +-.| ...+..|...|..+. ..
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~---~~IG---~~~AlfY~~wA~~lE-~~ 109 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHN---QGIG---VSLAQFYISWAEEYE-AR 109 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHH---TTSS---TTBHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHH---CCcc---hhhHHHHHHHHHHHH-Hc
Confidence 44667777665432 1245677778887777664 335555554332 2233 345667889999997 99
Q ss_pred cCHHHHHHHHHHHHHhh
Q psy4339 189 LEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~ 205 (303)
|++.+|.+.|+.+++..
T Consensus 110 ~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 110 ENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999999754
No 288
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=69.16 E-value=40 Score=29.06 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHH
Q psy4339 55 TESRRHAEKAIQTFKNLLPENHLLLTSAHRVKA 87 (303)
Q Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 87 (303)
++|+.+|++|++.+++....+++.....+.+++
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~a 481 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAA 481 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHh
Confidence 578899999999999887778887777666666
No 289
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.76 E-value=47 Score=27.16 Aligned_cols=45 Identities=22% Similarity=0.165 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy4339 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLY 198 (303)
Q Consensus 152 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~ 198 (303)
..+.++++.-..+ .|.........+..+|..|. +.|++.+|..++
T Consensus 115 ~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~-~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 115 KRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYV-EEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHH
Confidence 3456666665554 23222233456788999997 999999998887
No 290
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=68.26 E-value=13 Score=23.24 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 180 LASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 180 la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.|.-.. ..|++++|+.+|.++++.+.
T Consensus 17 ~Ave~D-~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 17 LAVKAD-KEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence 334445 88999999999999998776
No 291
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=67.70 E-value=54 Score=27.44 Aligned_cols=124 Identities=12% Similarity=-0.078 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhh----CCC----cHHHHHHHHHHHHHHHHhhcHH
Q psy4339 78 LLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHF----GEN----NVQTAKHYGNIGRLYQSMQKFD 149 (303)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~----~~~~~~~~~~la~~~~~~~~~~ 149 (303)
+.+.+++|+|.++..++.. ..+. ....|..+|++|--++.-+. ... ++....++..+.....+.--+.
T Consensus 121 E~a~vLfNlaal~s~~A~~---~~r~-~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~ 196 (392)
T 1zb1_A 121 EKSCTLFNIAVIFTQIARE---NINE-DYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVL 196 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TTTS-SSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---hchH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888777666532 1222 67889999999887765321 111 2333444433322221111111
Q ss_pred --------------------HHHHHHHHHHHHHHHhcCC--C--chH------------HHHHHHHHHHHHHHhhcCHHH
Q psy4339 150 --------------------EAERMQLKAIAIKEKVLGK--D--DYE------------VGLSVGHLASLYNYHMLEYHK 193 (303)
Q Consensus 150 --------------------~A~~~~~~al~~~~~~~~~--~--~~~------------~~~~~~~la~~~~~~~g~~~~ 193 (303)
++..+|++|.+........ + ... .+.+++..|.... ..+++.+
T Consensus 197 Kai~~~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~-e~~k~Ge 275 (392)
T 1zb1_A 197 KLLNDQISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLE-EENRVGE 275 (392)
T ss_dssp HHTTSTTGGGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCTTH
T ss_pred HHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccchHH
Confidence 3446677777766543211 0 111 1234455566665 7788888
Q ss_pred HHHHHHHHHHhhh
Q psy4339 194 AEKLYFRSIEIND 206 (303)
Q Consensus 194 A~~~~~~al~~~~ 206 (303)
|+.+++.|.+...
T Consensus 276 aIa~L~~A~~~l~ 288 (392)
T 1zb1_A 276 AIAFLDFSMQQLI 288 (392)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887665
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.54 E-value=36 Score=25.45 Aligned_cols=86 Identities=15% Similarity=-0.028 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHH
Q psy4339 13 LCSQLALKLKQVLF-GSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91 (303)
Q Consensus 13 ~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 91 (303)
.++++++..+...- =.++|.....+...+..+ ..++..++.+.|...... ..| ...+..|...|
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-----~~~~~~~p~~if~~L~~~---~IG---~~~AlfYe~wA---- 122 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-----LSNNFHESENTFKYMFNK---GIG---TKLSLFYEEFS---- 122 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHH---TSS---TTBHHHHHHHH----
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-----cccccCCHHHHHHHHHHC---CCc---HHHHHHHHHHH----
Confidence 45556655544221 136677788888777533 355567888888765443 222 23455565566
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q psy4339 92 EIALDSNELISVQFYKEAELLHQNALVL 119 (303)
Q Consensus 92 ~~~~~~~~~~~~~~~~~A~~~~~~al~~ 119 (303)
..+...|++.+|.++|+.+++.
T Consensus 123 ------~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 123 ------KLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------HHHHHcCCHHHHHHHHHHHHHc
Confidence 6668999999999999999984
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=67.41 E-value=20 Score=22.43 Aligned_cols=23 Identities=13% Similarity=-0.145 Sum_probs=19.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHh
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKH 123 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~ 123 (303)
-..|++++|+.+|..+++.+...
T Consensus 30 D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999887653
No 294
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=66.32 E-value=19 Score=30.93 Aligned_cols=103 Identities=10% Similarity=-0.053 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCC---c-H----HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH---hcCCCch
Q psy4339 103 VQFYKEAELLHQNALVLSLKHFGEN---N-V----QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK---VLGKDDY 171 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~~~~~~---~-~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~ 171 (303)
....+++.....++...+.....++ + | ......+++-.+|.+.++..-+...++. ++.... ...-...
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~p~~ 217 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKN-FQPKSMLAHFNEYQLD 217 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGSCHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH-hccCCCCcChhhCCcc
Confidence 3456667777777766643211111 1 1 1223445677899999999999888854 333211 0000113
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh-hhh
Q psy4339 172 EVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI-NDN 207 (303)
Q Consensus 172 ~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~-~~~ 207 (303)
..+.-.+.+|.++. ..++|.+|.+.+..|+.. ++.
T Consensus 218 q~v~Y~YYlGr~~~-~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 218 QQIEYRYLLGRYYL-LNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHC
T ss_pred ceEeeeHHHHHHHH-HHccHHHHHHHHHHHHHhcCCc
Confidence 56677889999998 999999999999999998 763
No 295
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=64.75 E-value=29 Score=23.36 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=19.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhh
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHF 124 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~ 124 (303)
-..|+|++|+.+|..+++.+....
T Consensus 29 D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999876653
No 296
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=63.27 E-value=24 Score=22.07 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=18.5
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHH
Q psy4339 140 RLYQSMQKFDEAERMQLKAIAIKEK 164 (303)
Q Consensus 140 ~~~~~~~~~~~A~~~~~~al~~~~~ 164 (303)
.-.-..|+|++|+.+|.++++.+..
T Consensus 19 ve~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3334568889999999888887654
No 297
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=63.03 E-value=14 Score=22.86 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
...+|.=|...|+|+.|+.+|+.+++...+.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999877664
No 298
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=61.92 E-value=23 Score=22.14 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+...|.-.. ..|++++|+.+|..+++...
T Consensus 16 l~~~Av~~D-~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 16 LVQKAIDLD-TATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Confidence 344445555 78999999999999998776
No 299
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=60.91 E-value=69 Score=27.47 Aligned_cols=63 Identities=14% Similarity=0.009 Sum_probs=47.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHh--hC-CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKH--FG-ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~--~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
.+|.+.++..-+...++. ++..... .. -.....+...+.+|.++...++|.+|.+++..|+..
T Consensus 184 kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKN-FQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH-hccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 888999999998888854 3332110 00 012356677889999999999999999999999987
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=60.84 E-value=10 Score=23.47 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhh
Q psy4339 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNL 71 (303)
Q Consensus 37 ~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~ 71 (303)
...+|+-+ ...|+|+.|+.+|+.+++...+.
T Consensus 15 ~~k~ARe~----Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 15 NVKLAREY----ALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHH----HHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHhcChHHHHHHHHHHHHHHHHH
Confidence 34556555 57899999999999999887764
No 301
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=60.01 E-value=26 Score=21.88 Aligned_cols=30 Identities=7% Similarity=-0.018 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 136 GNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 136 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
...|.-.-..|++++|+.+|..+++.+...
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 334444456789999999999998876543
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.99 E-value=28 Score=26.53 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh
Q psy4339 110 ELLHQNALVLSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHM 188 (303)
Q Consensus 110 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 188 (303)
...+++++..+... .-.+++....++...+... +++...|.-... +-.| ...+..|...|..+. ..
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~---~~IG---~~~AlfYe~wA~~lE-~~ 163 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAH---HHIG---QESSIFYEEYANYFE-SR 163 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHH---TTCS---TTBHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHH---CCcc---hhHHHHHHHHHHHHH-Hc
Confidence 46777777765432 1235677777777777642 355556554332 2233 334667889999997 99
Q ss_pred cCHHHHHHHHHHHHHhh
Q psy4339 189 LEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 189 g~~~~A~~~~~~al~~~ 205 (303)
|++.+|...|+.+++-.
T Consensus 164 g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 164 GLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999999754
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.85 E-value=58 Score=31.00 Aligned_cols=71 Identities=10% Similarity=-0.052 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHH-------------Hhc--CCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q psy4339 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKE-------------KVL--GKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYF 199 (303)
Q Consensus 135 ~~~la~~~~~~~~~~~A~~~~~~al~~~~-------------~~~--~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~ 199 (303)
-+-+|.+|...|++++|..+|++|-.-.. ... .+.......-|..+..++. ..+-++-++...+
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE-~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF-EESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHH-hcCCHHHHHHHHH
Confidence 36799999999999999999998742110 000 0000112234556777776 7777787887777
Q ss_pred HHHHhhh
Q psy4339 200 RSIEIND 206 (303)
Q Consensus 200 ~al~~~~ 206 (303)
.|++...
T Consensus 922 lAI~~~~ 928 (950)
T 4gq2_M 922 LADASKE 928 (950)
T ss_dssp HHHHTCC
T ss_pred HHHhhcc
Confidence 7776544
No 304
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=58.76 E-value=24 Score=22.60 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 177 VGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 177 ~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+...|.-.. ..|+|++|+.+|..+++.+.
T Consensus 18 lv~~Ave~D-~~g~y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 18 VLKRAVELD-AESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence 344555555 88999999999999998776
No 305
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.83 E-value=38 Score=25.30 Aligned_cols=36 Identities=8% Similarity=-0.117 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
.+...-.+.+|.++. ..++|.+|.+.+.+|+...+.
T Consensus 11 ~q~v~Y~YYlGr~~~-~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAM-FDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHCCH
Confidence 345667889999998 999999999999999988773
No 306
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=56.98 E-value=18 Score=30.99 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
+....++..+|.+|..+|+|++|..+.++++...
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 4455678889999999999999999999998753
No 307
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=56.84 E-value=19 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..+|..+. ..|++++|..++-+|+..++
T Consensus 21 V~~GE~L~-~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 21 IQLGEELL-AQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHcC
Confidence 46788887 99999999999999999888
No 308
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=56.69 E-value=37 Score=23.89 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
.+..+..+|.+|. +.|+..+|.+++.+|.+-.
T Consensus 124 ~~~~l~kia~Ay~-Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 124 SASILVAIANALR-RVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHH-HhcchhhHHHHHHHHHHhh
Confidence 3567889999998 9999999999999998643
No 309
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=56.35 E-value=85 Score=25.99 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhc--HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 132 AKHYGNIGRLYQSMQK--FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..++.+||.+-...-- ...++.+|.+|+...+..++..|. .-+..+|-.+ |+.+++.+|+.++-.|-....
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~-yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYY-YRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHT
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhh-hhcchHHHHHHHHHHHHHHHH
Confidence 3445555555433211 123899999999999998877664 3467788888 599999999999998877666
No 310
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=56.23 E-value=20 Score=30.81 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 128 NVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 128 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.+....++..+|.+|..+|+|++|..+.++++...
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 34456678889999999999999999999998753
No 311
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=51.10 E-value=61 Score=22.75 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 186 (303)
..|......|+++++-....+|..+.......-+++ ..+-.+|..+|.|
T Consensus 38 ~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e-geiA~nL~~LY~y 86 (145)
T 1vh6_A 38 RLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRN-IELSASMGAMYDY 86 (145)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHH
Confidence 344555566777777777777777764321111122 3334455555554
No 312
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=50.63 E-value=33 Score=19.59 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy4339 15 SQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESR 58 (303)
Q Consensus 15 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~ 58 (303)
.++|..|.+-+-.......+..+..+. .+ .++|+|++|+
T Consensus 22 H~EA~tIA~~L~~~~~~eE~v~mIr~~-SL----mNrG~Yq~Al 60 (61)
T 3ph0_C 22 HQEAASIADWLAQEECMAECVTLIRLS-SL----MNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHHHHTSSTTHHHHHHHHHH-HH----HHC-------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-HH----HccchHhHhh
Confidence 456666666555555545555666666 34 4888888875
No 313
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=49.09 E-value=34 Score=22.03 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhhhh
Q psy4339 178 GHLASLYNYHMLEYHKAEKLYFRSIEINDN 207 (303)
Q Consensus 178 ~~la~~~~~~~g~~~~A~~~~~~al~~~~~ 207 (303)
..+|..+. ..|+++.|..+|-+|+.++++
T Consensus 24 V~lGE~L~-~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELL-AQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHcCC
Confidence 46888887 999999999999999999883
No 314
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=47.71 E-value=63 Score=24.09 Aligned_cols=34 Identities=21% Similarity=0.041 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.+.+...+.+|.++...++|.+|.+.+..|+..+
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~ 44 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHC 44 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHC
Confidence 3456677899999999999999999999998764
No 315
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=46.35 E-value=55 Score=20.87 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=18.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHh
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKH 123 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~ 123 (303)
-..|+|++|+.+|..+++.+...
T Consensus 26 D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHH
Confidence 45688899999999998887664
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.10 E-value=78 Score=22.76 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
..+..|..-|.++...|++.+|...|+.+++.
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45667888999999999999999999999874
No 317
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=46.09 E-value=53 Score=20.61 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 176 SVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 176 ~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.+...|.-.. ..|++++|+.+|..+++.+.
T Consensus 18 ~lv~~Ave~D-~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 18 TVLKRAVELD-SESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Confidence 3445566666 89999999999999998776
No 318
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=45.46 E-value=54 Score=20.56 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 133 KHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 133 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
..+..-|.-.-..|+|++|+.+|..+++.+....
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3344555566778999999999999998876543
No 319
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=45.12 E-value=23 Score=30.50 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+....++..+|.+|..+|+|++|..+.++++..
T Consensus 199 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 345567888999999999999999999999874
No 320
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=43.77 E-value=71 Score=21.43 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=21.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q psy4339 139 GRLYQSMQKFDEAERMQLKAIAIKEKVL 166 (303)
Q Consensus 139 a~~~~~~~~~~~A~~~~~~al~~~~~~~ 166 (303)
|.-.-..|+|++|+.+|..+++.+....
T Consensus 25 Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 3334456899999999999999876653
No 321
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.26 E-value=1.3e+02 Score=24.47 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHH--------HHHHHHHHhcCCCchHHHHHHHHHH
Q psy4339 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL--------KAIAIKEKVLGKDDYEVGLSVGHLA 181 (303)
Q Consensus 110 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~~~~~~~~~~~~~~~~~~la 181 (303)
..+..+++....+. +.........+..+|..|...+++.+|..+|- ...++.-.+.....|.....+...|
T Consensus 115 ~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRa 193 (336)
T 3lpz_A 115 KRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARA 193 (336)
T ss_dssp HHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 44566677666552 32222333456789999999999999999972 1112222222222233334444333
Q ss_pred H-HHHHhhcCHHHHHHHHHHHHHhh
Q psy4339 182 S-LYNYHMLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 182 ~-~~~~~~g~~~~A~~~~~~al~~~ 205 (303)
. .|. ..++...|...+..-.+..
T Consensus 194 VL~yL-~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 194 VLPYL-LVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHH
Confidence 3 444 7899999988776655543
No 322
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=42.67 E-value=40 Score=28.82 Aligned_cols=34 Identities=21% Similarity=-0.000 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.+....+..-+|++|. -.|++++|..+.++++..
T Consensus 186 r~tk~aa~allarvyL-~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYL-YHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhC
Confidence 3455667889999998 799999999999999864
No 323
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=41.89 E-value=82 Score=21.60 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHH
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV-GLSVGHLASLYNY 186 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~ 186 (303)
..|......|++++.-....+|..+.......-+++. ..+-.+|..+|.|
T Consensus 41 ~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y 91 (131)
T 3iqc_A 41 SQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTH 91 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHH
Confidence 3445556678888888888888887655433333333 3455667777665
No 324
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=41.75 E-value=2.4e+02 Score=26.90 Aligned_cols=178 Identities=11% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HhCCCcHHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHH---HHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHH
Q psy4339 25 LFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQ---TFKNLLPENHLLLTSAHRVKALILEEIALDSNELI 101 (303)
Q Consensus 25 ~~~~~~~~~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~ 101 (303)
+....+.....+...||.++ .|+.++++..+.+.+. . .+.....-+...+| .++.
T Consensus 367 l~k~~~~~k~sA~aSLGlIh------~g~~~~gl~~L~~yL~~~~s------~~~~ik~GAllaLG----------li~a 424 (963)
T 4ady_A 367 LGKAQNWAKFTATASLGVIH------KGNLLEGKKVMAPYLPGSRA------SSRFIKGGSLYGLG----------LIYA 424 (963)
T ss_dssp HHHCCTHHHHHHHHHHHHHT------SSCTTTHHHHHTTTSTTSCC------SCHHHHHHHHHHHH----------HHTT
T ss_pred hhccchHHHHHHHHHhhhhc------cCchHHHHHHHHHhccccCC------CcHHHHHHHHHHHH----------HhcC
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHH-HHHH
Q psy4339 102 SVQFYKEAELLHQNALVLSLKHFGE--NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVG-LSVG 178 (303)
Q Consensus 102 ~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~ 178 (303)
..++ ++..++...+.......+. .......+...||.++...++ +++.+.+...+. .+++... .+-.
T Consensus 425 g~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~-------dd~~~~~~~Aal 494 (963)
T 4ady_A 425 GFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY-------NDSATSGEAAAL 494 (963)
T ss_dssp TTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH-------TCCHHHHHHHHH
T ss_pred CCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh-------cCCHHHHHHHHH
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHhhhccccccHHHHHHhHHHHHHhhhcHHHHHHH
Q psy4339 179 HLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEF 258 (303)
Q Consensus 179 ~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (303)
.+|.++. ..|+-+-...++..+.+... +...-...+|......|+.+.+...
T Consensus 495 ALGli~v-GTgn~~ai~~LL~~~~e~~~---------------------------e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 495 GMGLCML-GTGKPEAIHDMFTYSQETQH---------------------------GNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHT-TCCCHHHHHHHHHHHHHCSC---------------------------HHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHhhhhc-ccCCHHHHHHHHHHHhccCc---------------------------HHHHHHHHHHHHhhhCCChHHHHHH
Q ss_pred HHHH
Q psy4339 259 TNKL 262 (303)
Q Consensus 259 ~~~~ 262 (303)
.+.+
T Consensus 547 i~~L 550 (963)
T 4ady_A 547 ITKM 550 (963)
T ss_dssp HHHH
T ss_pred HHHH
No 325
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=41.39 E-value=89 Score=21.88 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGL 175 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 175 (303)
+..+...|.+|...|+.+.|--+|-+-+.+...+ +.||+.-.
T Consensus 42 a~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~ 83 (144)
T 2a9u_A 42 ALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQ 83 (144)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhh
Confidence 3455677999999999999999999999888665 66776543
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.33 E-value=1.6e+02 Score=27.97 Aligned_cols=65 Identities=11% Similarity=-0.039 Sum_probs=44.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHH-------------hhC--CCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLK-------------HFG--ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~-------------~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 162 (303)
.+|...|++++|..+|++|-..... ... +........|..+..++...+-++-++.+.+.|++..
T Consensus 848 r~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 848 LIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 7779999999999999986532100 000 0011233467788888888888888888888888653
No 327
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=40.98 E-value=44 Score=28.61 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 170 DYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 170 ~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
.+....++.-+|++|. -.|+|++|..+.++++..
T Consensus 192 r~tk~aa~allArvyL-~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYL-YKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhc
Confidence 3455677889999998 799999999999999864
No 328
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.93 E-value=94 Score=22.00 Aligned_cols=84 Identities=11% Similarity=-0.057 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q psy4339 109 AELLHQNALVLSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYH 187 (303)
Q Consensus 109 A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (303)
=...+++++..+... .-.+++.....+...+... +++...|.-... +-.| ...+..|...|..+. .
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~---~~IG---~~~AlfYe~wA~~lE-~ 113 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYN---HGIG---TLSSPLYIAWAGHLE-A 113 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHT---TTTT---TTBHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHH---CCCc---HHHHHHHHHHHHHHH-H
Confidence 446677777766432 2245677777777777653 335566654432 2123 345667888999998 9
Q ss_pred hcCHHHHHHHHHHHHHhh
Q psy4339 188 MLEYHKAEKLYFRSIEIN 205 (303)
Q Consensus 188 ~g~~~~A~~~~~~al~~~ 205 (303)
.|++.+|...|+.+++..
T Consensus 114 ~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 114 QGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 999999999999999743
No 329
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=40.83 E-value=45 Score=28.59 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+....++..+|.+|..+++|++|..+.++++.
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44567888999999999999999999999875
No 330
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=39.96 E-value=96 Score=21.84 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.+..+..+|..|.+.|+..+|.+++.+|.+
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 355678999999999999999999999876
No 331
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=38.07 E-value=1.9e+02 Score=24.59 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 150 EAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 150 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
.++.+|.+|+...+..++..|. .-|..+|-.+ |+.+++.+|+..+-.+-....
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~-yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYH-CRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhccCCc---cceeecchhh-hhcchHHHHHHHHHHHHHHHH
Confidence 4889999999999998877664 3467788888 599999999999998877665
No 332
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=37.95 E-value=76 Score=20.08 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHH-HHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHY-GNIGRLY 142 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 142 (303)
.-+.+.++|.+|...|+++... .++|..-.++ +.++.|-
T Consensus 61 k~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 61 KDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 5557899999999999999875 3566665555 4555553
No 333
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=36.21 E-value=1.6e+02 Score=23.22 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=71.7
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q psy4339 142 YQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYH 221 (303)
Q Consensus 142 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~ 221 (303)
..+.|+.++|+......++. .|..+..-..+-.++. -.|+++.|..-++.+.++.|...-.+..|.++-..
T Consensus 7 ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 45678899999988887753 2555566667777887 79999999999999999988655555555444222
Q ss_pred H---HHH-------hhhccccccHHHHHHhHHHHHHhhhcHHHHHHHHHHH
Q psy4339 222 Y---RDL-------KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKL 262 (303)
Q Consensus 222 ~---~a~-------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (303)
. +.+ ..++. |.-......-+......|+.++|.+....+
T Consensus 78 E~~R~~vfaG~~~P~~~g~--~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGE--NEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp HHHHHHHTTSCCCEECCCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCC--CHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 1 111 11221 112222334455666789999999876554
No 334
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=35.73 E-value=70 Score=27.68 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
+....++..+|.+|..+++|++|..+.++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345567888999999999999999999999864
No 335
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=35.65 E-value=2e+02 Score=24.30 Aligned_cols=21 Identities=10% Similarity=-0.077 Sum_probs=16.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q psy4339 98 NELISVQFYKEAELLHQNALV 118 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~ 118 (303)
..+...|+|.+|--++..+..
T Consensus 19 ~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 19 RIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777889999998888775444
No 336
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.51 E-value=2.4e+02 Score=25.22 Aligned_cols=121 Identities=9% Similarity=-0.013 Sum_probs=70.6
Q ss_pred cccHHHHHHHHHHHHHHHHhhCCcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHH
Q psy4339 51 SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQ 130 (303)
Q Consensus 51 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 130 (303)
..+.+.|...+...-.. ..............+| ......+...++..++.++... ..+..
T Consensus 227 r~d~~~A~~~~~~~~~~----~~~~~~~~~~~~~~ia----------~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 286 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQA----QQLNEDQIQELRDIVA----------WRLMGNDVTDEQAKWRDDAIMR------SQSTS 286 (618)
T ss_dssp HHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHH----------HTSCSTTCCHHHHHHHHHHHHT------CCCHH
T ss_pred hcCHHHHHHHHHhhhhc----cCCCHHHHHHHHHHHH----------HHHHHcCCChHHHHHHHhcccc------CCChH
Confidence 44666777666654332 1112223333444444 3334444355667777664321 12223
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 131 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
... ...+ .....|+++.|..++...- ..........+.+|.++. ..|+.++|..+|+++..
T Consensus 287 ~~e--~~~r-~Alr~~d~~~a~~~~~~l~--------~~~~~~~r~~YW~~ra~~-~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 LIE--RRVR-MALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLL-ERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHH--HHHH-HHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHT
T ss_pred HHH--HHHH-HHHHCCCHHHHHHHHHHcc--------ccccccHhHHHHHHHHHH-HcCCHHHHHHHHHHHhc
Confidence 322 2233 3456799999999886432 222345667899999998 99999999999999875
No 337
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.32 E-value=1.1e+02 Score=20.52 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy4339 103 VQFYKEAELLHQNALVLSLK 122 (303)
Q Consensus 103 ~~~~~~A~~~~~~al~~~~~ 122 (303)
.|+-+.|+++|++.+..+.+
T Consensus 35 ~g~k~~Al~lYk~GI~eLe~ 54 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIGHLLR 54 (116)
T ss_dssp HTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 35566666666666655544
No 338
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=32.97 E-value=67 Score=27.53 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy4339 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIE 203 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~ 203 (303)
+....+..-+|++|. -.|++++|..+.++++.
T Consensus 188 ~tk~aA~aLlARvyL-~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYL-LTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Confidence 455678889999998 89999999999999985
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.68 E-value=67 Score=23.04 Aligned_cols=65 Identities=8% Similarity=-0.086 Sum_probs=44.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhCCC-cHHHHH--HH-HHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 98 NELISVQFYKEAELLHQNALVLSLKHFGEN-NVQTAK--HY-GNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 98 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~--~~-~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
..++..|+|-+|=+.++....... +++ ...... +. ...|..+...|+..-|..++.+++......
T Consensus 40 i~lFn~g~yfeaHEvLEe~W~~~~---~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 40 VRLYNSGEFHESHDCFEDEWYNYG---RGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTTC---SSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCchHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 334667999999999998887421 110 122233 33 445666677899999999999999877543
No 340
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=31.19 E-value=52 Score=28.32 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+....++.-+|++|. -.|+|++|..+.++++..
T Consensus 199 ~tk~aa~allarvyL-~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYL-NMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhC
Confidence 445667889999998 799999999999999864
No 341
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=29.38 E-value=48 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
....++..+|.+|..+++|++|....++++.
T Consensus 178 tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 178 TQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3456788899999999999999999988864
No 342
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=28.92 E-value=2.7e+02 Score=23.65 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhc--HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 132 AKHYGNIGRLYQSMQK--FDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
..++.+||.+-...-. .+.++.+|.+|+...++.++..| ...|..+|-.+. +.+++.+|+.++-.+-....
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~-R~~~~~eAl~~wa~aa~Vi~ 334 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHC-RNRNVREALQAWADTATVIQ 334 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHH-HhhhHHHHHHHhhhhhhhhh
Confidence 3455566665533211 23478999999999999887665 345778888884 99999999999998877655
No 343
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.76 E-value=95 Score=26.65 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
....++..+|.+|..+|+|++|..+.++++..
T Consensus 195 tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 195 NKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 35567889999999999999999999999875
No 344
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=28.59 E-value=2.5e+02 Score=23.20 Aligned_cols=32 Identities=3% Similarity=-0.165 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 174 ~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
+.+++..|.... ..+++.+|+..++.|.+...
T Consensus 253 A~A~y~~a~~~~-~~~k~GeaIa~L~~A~~~l~ 284 (376)
T 3r9m_A 253 AYAYCYHGETLL-ASDKCGEAIRSLQEAEKLYA 284 (376)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHH
Confidence 344556666665 77888888888888877655
No 345
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.62 E-value=1.2e+02 Score=19.29 Aligned_cols=63 Identities=14% Similarity=-0.033 Sum_probs=41.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy4339 99 ELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165 (303)
Q Consensus 99 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 165 (303)
.+...|+|-+|=+.++........ .......+-+....|......|+. |...+.+++...+..
T Consensus 10 ~lfn~g~~~eaHEvlE~~W~~~~~--~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 10 GLWRAGRYYEVHEVLEPYWLKATG--EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHhCCChHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 346679999999999998875311 000112233344455566667887 999999999877554
No 346
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.00 E-value=2e+02 Score=21.49 Aligned_cols=87 Identities=17% Similarity=0.106 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc
Q psy4339 111 LLHQNALVLSLKH-FGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHML 189 (303)
Q Consensus 111 ~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~g 189 (303)
..+++++..+... .-.++|.....+...+..+ ..+...++...|.-... +-.| ...+..|...|..+. ..|
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~---~~IG---~~~AlfYe~wA~~lE-~~g 129 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFN---KGIG---TKLSLFYEEFSKLLE-NAQ 129 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH---HTSS---TTBHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHH---CCCc---HHHHHHHHHHHHHHH-HcC
Confidence 5788888876542 1245678888888888776 22335577777765543 2233 334667889999998 999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy4339 190 EYHKAEKLYFRSIEIN 205 (303)
Q Consensus 190 ~~~~A~~~~~~al~~~ 205 (303)
++.+|...|+.+++-.
T Consensus 130 ~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 130 FFLEAKVLLELGAENN 145 (202)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999999744
No 347
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=26.19 E-value=1.6e+02 Score=20.64 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhh
Q psy4339 173 VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIND 206 (303)
Q Consensus 173 ~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~~~ 206 (303)
++..+...|.+|. ..|+.+.|--+|-+...+.-
T Consensus 39 ta~~llr~A~~y~-~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 39 SGVEIIRMASIYS-EEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 3455667799997 99999999999999766653
No 348
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=25.85 E-value=1.1e+02 Score=26.54 Aligned_cols=32 Identities=6% Similarity=0.111 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 129 VQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 129 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
+....++..+|.+|...++|++|....++++.
T Consensus 179 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 179 ATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999999999985
No 349
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=23.29 E-value=1.5e+02 Score=25.52 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q psy4339 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204 (303)
Q Consensus 171 ~~~~~~~~~la~~~~~~~g~~~~A~~~~~~al~~ 204 (303)
+....++.-+|++|. -.|++++|..+.++++..
T Consensus 200 ~tk~aA~allArvyL-~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACL-YARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhc
Confidence 445667888999998 899999999999999863
No 350
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.04 E-value=2.5e+02 Score=21.31 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhC-CcchhhhHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy4339 58 RRHAEKAIQTFKNLL-PENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYG 136 (303)
Q Consensus 58 ~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 136 (303)
...+++++..+.... -.+++....++...+ . ..+++.++|.-...- -. ....+..|.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya----------~------~~~~p~~if~~L~~~---~I---G~~~AlfYe 154 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYV----------N------YIDEPVELFSFLAHH---HI---GQESSIFYE 154 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHH----------T------TCSCHHHHHHHHHHT---TC---STTBHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHH----------H------ccCCHHHHHHHHHHC---Cc---chhHHHHHH
Confidence 456777776654321 133444555444433 1 123555555543331 12 234566788
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 137 NIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 137 ~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
.-|.++...|++.+|...|+.+++.
T Consensus 155 ~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 155 EYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8999999999999999999999875
No 351
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=22.06 E-value=1.7e+02 Score=25.60 Aligned_cols=32 Identities=6% Similarity=0.119 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
....++..+|.+|...++|++|....++++..
T Consensus 196 tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 196 CKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34567888999999999999999999999863
No 352
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=21.98 E-value=1.6e+02 Score=18.65 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchHHHHHH-HHHHHH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV-GHLASL 183 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~ 183 (303)
+.....-|.-+...++|.+|..+|+++... .++|..-.+. +.++.+
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec 99 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEEC 99 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHH
Confidence 445556677788899999999999999865 3446655444 444444
No 353
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=21.73 E-value=2.1e+02 Score=19.97 Aligned_cols=41 Identities=7% Similarity=-0.113 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhhCCcchhhh
Q psy4339 33 VAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLL 79 (303)
Q Consensus 33 ~~~~~~~la~~~y~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (303)
++..+...|..| ...|+.+.|--+|-+-+.++... +.||+.
T Consensus 41 sa~~L~r~A~~y----~~EGd~E~AYilymRy~~L~~kI--pkHpdy 81 (144)
T 2a9u_A 41 SALKIFKTAEEC----RLDRDEERAYVLYMKYVTVYNLI--KKRPDF 81 (144)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHH--TTSHHH
T ss_pred HHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHH--hcCcch
Confidence 455666777666 69999999999999999998655 567764
No 354
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=21.03 E-value=1.9e+02 Score=20.15 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCchH
Q psy4339 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYE 172 (303)
Q Consensus 132 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 172 (303)
+..+...|.+|...|+.+.|.-+|-+...+.-... +.||+
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R~~~L~~e~I-pkHpd 79 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKL-PKHRD 79 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG-GGSTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc-ccCcc
Confidence 44566779999999999999999999988875332 33454
No 355
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.90 E-value=2.3e+02 Score=20.02 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy4339 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161 (303)
Q Consensus 130 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 161 (303)
..+..|..-|..+...|++.+|...|+.+++.
T Consensus 99 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 99 LSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45667888999999999999999999999874
No 356
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=20.55 E-value=4.6e+02 Score=23.44 Aligned_cols=52 Identities=6% Similarity=-0.067 Sum_probs=39.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy4339 101 ISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160 (303)
Q Consensus 101 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 160 (303)
.+.|+++.|..++...-. .........+-+|..+..+|+.++|..+|+++..
T Consensus 296 lr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 467999999998854222 2234456678999999999999999999998754
Done!