RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4339
(303 letters)
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 93.7 bits (234), Expect = 1e-22
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN 70
+ LC Q AL+ + G ++ VA + LA ++ E+ A+ +
Sbjct: 21 VPLCKQ-ALEDLEKTSGHDHPDVATMLNILALVYR----DQNKYKEAAHLLNDALAIREK 75
Query: 71 LLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLSLKHFGE 126
L ++H +A N L + YKEAE L + AL + K G+
Sbjct: 76 TLGKDHP--------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186
+ AK N+ L Q+ K +E E +A+ I LG DD V + +LAS Y
Sbjct: 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY-L 180
Query: 187 HMLEYHKAEKLYFRSIEI 204
+Y AE LY +
Sbjct: 181 KQGKYQDAETLYKEILTR 198
Score = 86.0 bits (214), Expect = 9e-20
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YK 107
+ ++A++ + +H ++A N L V YK
Sbjct: 15 VPRGSAVPLCKQALEDLEKTSGHDHP--------------DVATMLNILALVYRDQNKYK 60
Query: 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167
EA L +AL + K G+++ A N+ LY K+ EAE + +A+ I+EKVLG
Sbjct: 61 EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120
Query: 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
K +V + +LA L + + + E Y R++EI
Sbjct: 121 KFHPDVAKQLNNLALLC-QNQGKAEEVEYYYRRALEI 156
Score = 79.9 bits (198), Expect = 2e-17
Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 27/199 (13%)
Query: 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN 70
LC + AL++++ + G + VA + LA + G+ E + +A++ +
Sbjct: 105 EPLCKR-ALEIREKVLGKFHPDVAKQLNNLALLCQ----NQGKAEEVEYYYRRALEIYAT 159
Query: 71 LLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLS-LKHFG 125
L + +A N L S Y++AE L++ L + K FG
Sbjct: 160 RLGPDDP--------------NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205
Query: 126 ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185
N + + +S K ++ K D V ++ L +LY
Sbjct: 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEY--GSWYKACKVDSPTVNTTLRSLGALY- 262
Query: 186 YHMLEYHKAEKLYFRSIEI 204
+ A L +
Sbjct: 263 RRQGKLEAAHTLEDCASRN 281
Score = 52.9 bits (128), Expect = 3e-08
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 137 NIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEK 196
+ + A + +A+ EK G D +V + LA +Y +Y +A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY-RDQNKYKEAAH 64
Query: 197 LYFRSIEI 204
L ++ I
Sbjct: 65 LLNDALAI 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 93.4 bits (233), Expect = 3e-22
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN 70
+ LC Q AL+ + G ++ VA + LA ++ ++ A+ +
Sbjct: 47 VPLCKQ-ALEDLEKTSGHDHPDVATMLNILALVYR----DQNKYKDAANLLNDALAIREK 101
Query: 71 LLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLSLKHFGE 126
L ++H +A N L + YKEAE L + AL + K G+
Sbjct: 102 TLGKDHP--------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147
Query: 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNY 186
++ AK N+ L Q+ K++E E +A+ I + LG DD V + +LAS Y
Sbjct: 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY-L 206
Query: 187 HMLEYHKAEKLYFRSIEI 204
++ +AE LY +
Sbjct: 207 KQGKFKQAETLYKEILTR 224
Score = 91.1 bits (227), Expect = 2e-21
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 23/193 (11%)
Query: 16 QLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPEN 75
L G E L S GR+ + ++A++ + +
Sbjct: 9 SGRENLYFQGGGYEIPARLRTLHNLVIQYA----SQGRYEVAVPLCKQALEDLEKTSGHD 64
Query: 76 HLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLSLKHFGENNVQT 131
H ++A N L V YK+A L +AL + K G+++
Sbjct: 65 HP--------------DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191
A N+ LY K+ EAE + +A+ I+EKVLGKD +V + +LA L + +Y
Sbjct: 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC-QNQGKY 169
Query: 192 HKAEKLYFRSIEI 204
+ E Y R++EI
Sbjct: 170 EEVEYYYQRALEI 182
Score = 83.7 bits (208), Expect = 9e-19
Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
AL +++ G ++ VA + LA G++ E+ ++A++ + +L ++H
Sbjct: 95 ALAIREKTLGKDHPAVAATLNNLAVLYG----KRGKYKEAEPLCKRALEIREKVLGKDHP 150
Query: 78 LLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLSLKHFGENNVQTAK 133
++A N L + Y+E E +Q AL + G ++ AK
Sbjct: 151 --------------DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196
Query: 134 HYGNIGRLYQSMQKFDEAERMQLKAIAI-KEKVLGKDDYEVGLSVGHLASLYNYHMLEYH 192
N+ Y KF +AE + + + E+ G D E H +
Sbjct: 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE-ECKGKQK 255
Query: 193 KAEKLYFRSIEI 204
Sbjct: 256 DGTSFGEYGGWY 267
Score = 79.1 bits (196), Expect = 3e-17
Identities = 34/199 (17%), Positives = 75/199 (37%), Gaps = 27/199 (13%)
Query: 11 LSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKN 70
LC + AL++++ + G ++ VA + LA + G++ E + ++A++ ++
Sbjct: 131 EPLCKR-ALEIREKVLGKDHPDVAKQLNNLALLCQ----NQGKYEEVEYYYQRALEIYQT 185
Query: 71 LLPENHLLLTSAHRVKALILEEIALDSNELISVQF----YKEAELLHQNALVLS-LKHFG 125
L + +A N L S +K+AE L++ L + + FG
Sbjct: 186 KLGPDDP--------------NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231
Query: 126 ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185
+ + + + + K + K D V ++ +L +LY
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFG--EYGGWYKACKVDSPTVTTTLKNLGALY- 288
Query: 186 YHMLEYHKAEKLYFRSIEI 204
++ AE L ++
Sbjct: 289 RRQGKFEAAETLEEAAMRS 307
Score = 35.6 bits (83), Expect = 0.014
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
+ + G + ++ +L Y Y A L +++E
Sbjct: 5 HHHSSGRENLYFQGGGYEIPARLRTLHNLVIQY-ASQGRYEVAVPLCKQALED 56
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 55.4 bits (134), Expect = 2e-09
Identities = 11/99 (11%), Positives = 31/99 (31%), Gaps = 4/99 (4%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ A L E+ + + + + + A + K++ ++
Sbjct: 82 WDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
D + + L L +A++ + R+ +I
Sbjct: 141 --DDQVAIACAFRGLGDLA-QQEKNLLEAQQHWLRARDI 176
Score = 54.2 bits (131), Expect = 5e-09
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ EA Q + K ++ + +G + + +D A R L+ +
Sbjct: 42 FDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS- 98
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
L +D + +A++ H + A + Y +S+
Sbjct: 99 LPEDPLAASANAYEVATVA-LHFGDLAGARQEYEKSLVY 136
Score = 48.4 bits (116), Expect = 4e-07
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 9/123 (7%)
Query: 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLG 167
EA + + +G +Y M +FDEA +K
Sbjct: 4 EAHDYALAERQAQAL--LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-- 59
Query: 168 KDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI----NDNLKLFSASYSGLEYHYR 223
D ++ + + + A + + E+ ++ SA+ +
Sbjct: 60 GDHTAEHRALHQVGMVE-RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118
Query: 224 DLK 226
Sbjct: 119 HFG 121
Score = 47.3 bits (113), Expect = 1e-06
Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 16/143 (11%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
+G + +RR + + +L + +A+ + +AL +
Sbjct: 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYE-----VATVALHFGD------LAG 125
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A ++ +LV + + ++ V A + +G L Q + EA++ L+A I ++ +
Sbjct: 126 ARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--E 181
Query: 169 DDYEVGLSVGHLASLYNYHMLEY 191
D V + L L +H +
Sbjct: 182 DSEAVNELMTRLNGLE-HHHHHH 203
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 55.4 bits (134), Expect = 7e-09
Identities = 17/99 (17%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+++A ++ L L+++ GE V+ A+ ++G Y + +F+ A + +AI +++
Sbjct: 279 FEDAAEHYKRTLALAVE-LGEREVE-AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
D + L + + + + +A K + +++
Sbjct: 337 --GDRIGEARACWSLGNAH-SAIGGHERALKYAEQHLQL 372
Score = 54.6 bits (132), Expect = 1e-08
Identities = 17/152 (11%), Positives = 47/152 (30%), Gaps = 10/152 (6%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ Q A+ E+ + Y +G Y + +++A + + + + +
Sbjct: 64 CRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN---DNLKLFSASYSGLEYHY 222
D S G+L + M + +A R + + + + L Y
Sbjct: 120 --NDRLGEAKSSGNLGNTL-KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176
Query: 223 RDLKLFSASYSGLEYDYRGLIHVYECLENFEK 254
+ ++ + +E +++
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
Score = 54.6 bits (132), Expect = 1e-08
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 14/163 (8%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLL-------LTSAHRVKALILEEIALDSNELI 101
GRF E+ E+ + + L + L L + + K L +
Sbjct: 137 KVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194
Query: 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161
+ A +Q L L + GN+G Y + F A + + I
Sbjct: 195 VKEALTRAVEFYQENLKLMRDLGDRGAQ--GRACGNLGNTYYLLGDFQAAIEHHQERLRI 252
Query: 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
+ D + +L + + + ++ A + Y R++ +
Sbjct: 253 AREF--GDRAAERRANSNLGNSH-IFLGQFEDAAEHYKRTLAL 292
Score = 46.5 bits (111), Expect = 4e-06
Identities = 10/115 (8%), Positives = 32/115 (27%), Gaps = 5/115 (4%)
Query: 90 LEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFD 149
+ ++ + + S+ + + + G +
Sbjct: 6 MSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCR 65
Query: 150 EAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
AI +D + L + Y +++ +Y+KA + + + +
Sbjct: 66 AGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAY-FYLGDYNKAMQYHKHDLTL 115
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 52.5 bits (127), Expect = 1e-08
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+++A + H+ L+++ K FG+ + Y N+G Y + +F+ A K + + ++
Sbjct: 25 FRDAVIAHEQRLLIA-KEFGDKAAE-RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
KD S L + Y + +Y KA + + + I
Sbjct: 83 --KDRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAI 118
Score = 51.0 bits (123), Expect = 4e-08
Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
++ A ++ L+L+ + A+ ++G Y +Q +++A LK +AI +++
Sbjct: 65 FETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 122
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208
KD G + L + Y + + +A + +EI+ +
Sbjct: 123 --KDRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHLEISREV 162
Score = 42.5 bits (101), Expect = 3e-05
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191
+ +GN+G + + F +A + + I ++ D ++ +L + Y + E+
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAY-IFLGEF 65
Query: 192 HKAEKLYFRSIEINDNLK 209
A + Y +++ + LK
Sbjct: 66 ETASEYYKKTLLLARQLK 83
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 54.2 bits (131), Expect = 1e-08
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ A L++ L L + + +GN+G + + F +A + + I ++
Sbjct: 159 LQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205
D + +L + Y + E+ A + Y +++ +
Sbjct: 217 --GDKAAERRAYSNLGNAY-IFLGEFETASEYYKKTLLLA 253
Score = 52.2 bits (126), Expect = 6e-08
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ + A+ + E+ + Y +G Y + + +A + + +
Sbjct: 21 CRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205
D + G+L + + + +A R ++I+
Sbjct: 77 --GDQLGEAKASGNLGNTL-KVLGNFDEAIVCCQRHLDIS 113
Score = 40.7 bits (96), Expect = 3e-04
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
Y++A H L ++ + ++ + + ++G Y ++ D+A K + I +V
Sbjct: 279 YEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336
Score = 39.9 bits (94), Expect = 6e-04
Identities = 8/79 (10%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190
+ G A+ + +D + L + Y +++ +
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAY-FYLHD 58
Query: 191 YHKAEKLYFRSIEINDNLK 209
Y KA + + + + +
Sbjct: 59 YAKALEYHHHDLTLARTIG 77
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 53.8 bits (130), Expect = 2e-08
Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ A ++ L L + + +GN+G + + F +A + + I ++
Sbjct: 163 LQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209
D + +L + Y + E+ A + Y +++ + LK
Sbjct: 221 --GDKAAERRAYSNLGNAY-IFLGEFETASEYYKKTLLLARQLK 261
Score = 53.5 bits (129), Expect = 2e-08
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
Y++A H L ++ + + + + ++G Y ++ D+A K + I +V
Sbjct: 283 YEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASY 215
D + +L+ L L Y + + EI+ +L
Sbjct: 341 --GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKL 388
Score = 49.2 bits (118), Expect = 7e-07
Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 24/208 (11%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
SG E A+Q + T + + I ++ N + Y +
Sbjct: 20 CKSGDCRAGVSFFEAAVQ-----------VGTEDLKTLSAIYSQLG---NAYFYLHDYAK 65
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A H + L L+ + + AK GN+G + + FDEA + + I ++
Sbjct: 66 ALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 121
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLF 228
D ++ +L ++Y + + + A+ ++++ +L L
Sbjct: 122 DKVGEARALYNLGNVY-HAKGKSFGCPGPQDVGEFPEEVRDALQAA---VDFYEENLSLV 177
Query: 229 SASY--SGLEYDYRGLIHVYECLENFEK 254
+A + + L + + L NF
Sbjct: 178 TALGDRAAQGRAFGNLGNTHYLLGNFRD 205
Score = 39.2 bits (92), Expect = 0.001
Identities = 9/86 (10%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 125 GENNVQ-TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASL 183
G +++ + G A+ + +D + L +
Sbjct: 1 GPGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNA 56
Query: 184 YNYHMLEYHKAEKLYFRSIEINDNLK 209
Y +++ +Y KA + + + + +
Sbjct: 57 Y-FYLHDYAKALEYHHHDLTLARTIG 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 49.8 bits (119), Expect = 4e-07
Identities = 28/191 (14%), Positives = 68/191 (35%), Gaps = 18/191 (9%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
Y + S +A +A + +K N L A + +L + Y++
Sbjct: 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRL--------LQCHSLFATNFLDL---KQYED 202
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A Q A ++ + + NIG S ++++A +AIA+ E+
Sbjct: 203 AISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--N 258
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL--KLFSASYSGLEYHYRDLK 226
+ + + ++ Y + + KA + + + + + ++ + + L+ Y
Sbjct: 259 ILPSLPQAYFLITQIH-YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317
Query: 227 LFSASYSGLEY 237
A ++
Sbjct: 318 DEEAIQGFFDF 328
Score = 41.7 bits (98), Expect = 2e-04
Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 7/156 (4%)
Query: 58 RRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI----ALDSNELISVQFYKEAELLH 113
R A + + E + L E L+ E + +E L
Sbjct: 25 RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS 84
Query: 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173
L + K + G +++ A + KA + V KD E
Sbjct: 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEK 142
Query: 174 GLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209
++ Y Y+M + + + ++ EI +
Sbjct: 143 AEFFFKMSESY-YYMKQTYFSMDYARQAYEIYKEHE 177
Score = 31.3 bits (71), Expect = 0.37
Identities = 15/137 (10%), Positives = 40/137 (29%), Gaps = 36/137 (26%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
Y++A + A+ + + + Y I +++ + K D+A K +A +K
Sbjct: 240 YEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297
Query: 166 LGKDDY---------------------------------EVGLSVGHLASLYNYHMLEYH 192
++ +A Y + +
Sbjct: 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY-HERKNFQ 356
Query: 193 KAEKLYFRSIEINDNLK 209
KA + + ++ ++
Sbjct: 357 KASAYFLKVEQVRQLIQ 373
Score = 30.6 bits (69), Expect = 0.68
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD 169
++ + Y + F +A LK +++ + G
Sbjct: 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGV 376
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 47.5 bits (113), Expect = 3e-06
Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 27/218 (12%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
Y + S H +A+ ++N + L IA + ++ + Y +
Sbjct: 152 YHMKQTHVSMYHILQALDIYQNHPLYSIRT--------IQSLFVIAGNYDDF---KHYDK 200
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A + AL L++ +N+ A NI Y A KA + + K
Sbjct: 201 ALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE---K 255
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL--KLFSASYSGLEYHYRDLK 226
+ + L+ + KA + ++ K + + L+ Y
Sbjct: 256 VPDLLPKVLFGLSWTL-CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY---- 310
Query: 227 LFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSE 264
+ E L+ +E + +
Sbjct: 311 ----KETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344
Score = 45.6 bits (108), Expect = 9e-06
Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 18/195 (9%)
Query: 39 ELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLL-PENHLLLTSAHRVKALILEEIALDS 97
+ L ++ G+ +R + ++T + LL + + + +
Sbjct: 59 CFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQ---- 114
Query: 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157
+ Y EA ++ A ++++ A+ + + Y M++ + L+
Sbjct: 115 ------KEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Query: 158 AIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI---NDNLKLFSAS 214
A+ I + S+ +A Y Y KA ++E+ N + + S
Sbjct: 167 ALDIYQN-HPLYSIRTIQSLFVIAGNY-DDFKHYDKALPHLEAALELAMDIQNDRFIAIS 224
Query: 215 YSGLEYHYRDLKLFS 229
+ Y
Sbjct: 225 LLNIANSYDRSGDDQ 239
Score = 31.7 bits (72), Expect = 0.26
Identities = 16/161 (9%), Positives = 47/161 (29%), Gaps = 23/161 (14%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
SG + H +KA + + +P+ +L ++ L ++
Sbjct: 233 DRSGDDQMAVEHFQKAAKVSREKVPDLL----------PKVLFGLS---WTLCKAGQTQK 279
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A + L + + + + +K ++ EK
Sbjct: 280 AFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIH-------DLLSYFEK--KN 330
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209
+ A+++ + +A Y + ++ +++
Sbjct: 331 LHAYIEACARSAAAVF-ESSCHFEQAAAFYRKVLKAQEDIL 370
Score = 27.1 bits (60), Expect = 9.2
Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 138 IGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKL 197
I Y+ +++F + LKA ++ ++D ++ + + + ML+Y + K
Sbjct: 16 INEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQL-MLDYLEPGKT 74
Query: 198 YFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRG 241
Y + + L+ L LK +S + G+ +
Sbjct: 75 YGNRPTVTELLETIETPQKKLTGL---LKYYSLFFRGMYEFDQK 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 3e-05
Identities = 52/278 (18%), Positives = 84/278 (30%), Gaps = 89/278 (32%)
Query: 60 HAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVL 119
A + + F +LPE E A D +E + AEL+ L
Sbjct: 29 IASQLQEQFNKILPEP--------------TEGFAAD-DEPTTP-----AELV---GKFL 65
Query: 120 SLKHFGENNVQ--TAKHYGNIGRLYQSMQKFDEAERMQLKAI-AIKEKVLGKDDYEVGLS 176
+ + V+ + + L + +F E ++ I A+ K+L ++D + +
Sbjct: 66 G---YVSSLVEPSKVGQFDQV--LNLCLTEF-ENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 177 VGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLF-------- 228
+ + Y A + R + N LF A G + +L
Sbjct: 120 KELIKN--------YITARIMAKRPFDKKSNSALFRAVGEG------NAQLVAIFGGQGN 165
Query: 229 SASYSGLE-----YD-YRGLIHVY-----ECLENFEKMTEFTNK-------LSEWKILRE 270
+ Y E Y Y L+ E L + T K + EW
Sbjct: 166 TDDY--FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW----- 218
Query: 271 TNELNEPECH--IDY---AKPSEPL-GET-MAKYYALC 301
L P DY S PL G +A Y
Sbjct: 219 ---LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Score = 43.5 bits (102), Expect = 7e-05
Identities = 49/253 (19%), Positives = 75/253 (29%), Gaps = 79/253 (31%)
Query: 20 KLKQVLFGSENLQVAIAE--DELAYALYVNEYSSGR--FTESRRHAEKAIQTFKNLLPEN 75
+ FG E + I E + + V+ F E H+ TF++ +
Sbjct: 1670 VNLTIHFGGEKGK-RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRS--EKG 1724
Query: 76 HLLLTS-AHRVKALILEEIALDSNELISVQFYKEAELLHQNALV--LSLKHFGENNVQTA 132
L T AL L E A + K L+ +A SL GE A
Sbjct: 1725 LLSATQFTQP--ALTLMEKAA-------FEDLKSKGLIPADATFAGHSL---GEY---AA 1769
Query: 133 -KHYGNI-------------GRLYQSMQKFDEAERMQLKAIAIK----EKVLGKDDYE-- 172
++ G Q DE R IAI ++ +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 173 ---VGLSVGHLASLYNY--------------------HMLEYHKAEKLYFRSIEINDNLK 209
VG G L + NY ++L + K +K+ D ++
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI--------DIIE 1881
Query: 210 LF-SASYSGLEYH 221
L S S +E H
Sbjct: 1882 LQKSLSLEEVEGH 1894
Score = 29.6 bits (66), Expect = 1.5
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 250 ENFEKMTEFTNKLSEWKILRETNELNEPECHIDYAKPSEPLGET 293
EN+ M T + K + E+NE + L T
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Score = 28.9 bits (64), Expect = 3.0
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 19/85 (22%)
Query: 16 QLALKLKQVLF--GSENLQV----AIAEDELAYALYVNEYSSGRFT-------ESRRHAE 62
K VLF G + ++ L +L NE G + ++ +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE---GVPSPMLSISNLTQEQVQ 350
Query: 63 KAIQTFKNLLPEN---HLLLTSAHR 84
+ + LP + L + +
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAK 375
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 43.3 bits (101), Expect = 5e-05
Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 57 SRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNA 116
+ E+ + + ++ N L + + +L+ + I++ +EA
Sbjct: 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAM---DACINLGLLEEALFYGTRT 355
Query: 117 LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD 169
+ F ++ +G+L F +A + A I G++
Sbjct: 356 MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 56/329 (17%), Positives = 112/329 (34%), Gaps = 83/329 (25%)
Query: 4 KKILLKNLSLCSQLALKLKQVLFGSENLQVA-IAE---DELAYALYVNEYSSGRFTESRR 59
K +LLK L C L ++VL + +++ IAE D LA + + T
Sbjct: 304 KSLLLKYLD-CRPQDLP-REVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 60 HAEKAIQT------FKNL--LPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111
+ ++ F L P + + + + +LI ++ ++ + +K + L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPS-AHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYS-L 416
Query: 112 LHQNA---------LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ + + L LK EN + A H + Y + FD + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLEN--EYALHRSIVDH-YNIPKTFDSDDLIPPYL---- 469
Query: 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHY 222
D Y Y++ + +H ++IE + + LF + L++ +
Sbjct: 470 ------DQY-----------FYSH--IGHH------LKNIEHPERMTLFRMVF--LDFRF 502
Query: 223 RDLKLFSASYSG------------LEYDYRGLIHVYECLENFEKMTEFTNKLSEWKILRE 270
+ K+ S + L++ Y+ I +N K N + ++ E
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKF-YKPYI-----CDNDPKYERLVNAILDFLPKIE 556
Query: 271 TNELNEPEC---HIDYAKPSEPLGETMAK 296
N + I E + E K
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 27.9 bits (61), Expect = 5.1
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 220 YHYRDLKLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEWKILRETNELNE 276
+H+ D + +Y Y+ ++ V+E + F + + K + E++
Sbjct: 4 HHHMDFET-----GEHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDH 53
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 41.4 bits (97), Expect = 2e-04
Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 106 YKEAELLHQNA---LVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
EA A L S + + A Y +++ ++ ++A+ L+
Sbjct: 7 ISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH 66
Query: 163 EKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
+ + + + + +A + ++ +
Sbjct: 67 ANN--RSLFHAAKAFEQAGMMLK-DLQRMPEAVQYIEKASVM 105
Score = 39.5 bits (92), Expect = 9e-04
Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 11/143 (7%)
Query: 62 EKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSL 121
+A+Q + + A+ L+ +L+ +A L+Q A +
Sbjct: 93 PEAVQYIEKAS--VMYVENGTPDTAAMALDRAG----KLMEPLDLSKAVHLYQQAAAVFE 146
Query: 122 KHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181
E Q A+ G RL QKFDEA K ++ +++ ++
Sbjct: 147 N--EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQV 202
Query: 182 SLYNYHMLEYHKAEKLYFRSIEI 204
+ H +Y A+K S I
Sbjct: 203 LVQ-LHRADYVAAQKCVRESYSI 224
Score = 38.3 bits (89), Expect = 0.002
Identities = 20/162 (12%), Positives = 52/162 (32%), Gaps = 18/162 (11%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
++ + +++ + + N H A E+ L +Q E
Sbjct: 47 KNAKQLEQAKDAYLQEAEAHANNRSLFHA---------AKAFEQAG---MMLKDLQRMPE 94
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A + A V+ +++ A G+L + +A + +A A+ E +
Sbjct: 95 AVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN--EE 149
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKL 210
+ +G + L ++ +A + + ++
Sbjct: 150 RLRQAAELIGKASRLL-VRQQKFDEAAASLQKEKSMYKEMEN 190
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 39.9 bits (92), Expect = 8e-04
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Query: 47 NEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFY 106
N R + + + ++ + + + ++ ++ + + +Q +
Sbjct: 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAM---GVCLYMQDW 356
Query: 107 KEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVL 166
+ A Q + KH+ ++ A + +GRLY ++ E+ KAIAI E
Sbjct: 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416
Query: 167 GKD 169
GKD
Sbjct: 417 GKD 419
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 39.5 bits (91), Expect = 0.001
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 3/114 (2%)
Query: 56 ESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQN 115
S + ++ + L + + + +L + + L Q Y+EA +
Sbjct: 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL---QAYEEASHYARR 376
Query: 116 ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKD 169
+ +K + NN Q G + M KA AI G
Sbjct: 377 MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 38.8 bits (90), Expect = 0.002
Identities = 41/219 (18%), Positives = 65/219 (29%), Gaps = 17/219 (7%)
Query: 9 KNLSLCSQLALKLKQVLFGSENLQVAIAEDELAYALYVNE----YSSGRFTESRRHAEKA 64
N L LALKL ++ E E A S+ +F + +KA
Sbjct: 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKA 266
Query: 65 IQTFKNLL---PENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVL-S 120
I+ K L P N H L Y + +LL +
Sbjct: 267 IELLKKALEYIPNNA----YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322
Query: 121 LKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180
LK E N + + L+ +++EAE K + + L
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE-----LTPVAKQLLHLRY 377
Query: 181 ASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLE 219
+ Y M KA + ++IN + L+
Sbjct: 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Score = 38.8 bits (90), Expect = 0.002
Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 2/133 (1%)
Query: 106 YKEAELLHQNALVLSLK-HFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164
+ A + A L + H + +++ +GN +Y M + + + K + EK
Sbjct: 67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126
Query: 165 VLGKDDYEVGLSVGHLA-SLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYR 223
E + + +A+ + +++E F++ + Y
Sbjct: 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186
Query: 224 DLKLFSASYSGLE 236
+ + L
Sbjct: 187 NWPPSQNAIDPLR 199
Score = 34.1 bits (78), Expect = 0.055
Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 35/187 (18%)
Query: 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111
+ +AI+ L P+N + AL L ++ + E E E
Sbjct: 189 PPSQNAIDPLRQAIR----LNPDNQ----YLKVLLALKLHKMREEGEE------EGEGEK 234
Query: 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV------ 165
L + AL E + + Y+ + D+A + KA+
Sbjct: 235 LVEEAL--------EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLE----YHKAEKLYFRSIEINDNLKLFSASYSGLEYH 221
+G V +L Y + A ++ E NDN S L
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN---LFRVCSILASL 343
Query: 222 YRDLKLF 228
+ +
Sbjct: 344 HALADQY 350
Score = 33.0 bits (75), Expect = 0.10
Identities = 19/180 (10%), Positives = 44/180 (24%), Gaps = 21/180 (11%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
Y GR ++ + + +K + + + + +
Sbjct: 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG--------NQNER 156
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A++ + AL N + + A +AI +
Sbjct: 157 AKVCFEKALEKK-----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP----- 206
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLF 228
D+ + + + E + EKL ++E + YR
Sbjct: 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG---VTDVLRSAAKFYRRKDEP 263
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 38.6 bits (89), Expect = 0.002
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 30/171 (17%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+EA L++ AL + + A + N+ + Q K EA +AI I
Sbjct: 25 IEEAVRLYRKALEVFPEF--------AAAHSNLASVLQQQGKLQEALMHYKEAIRISP-- 74
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225
+ ++G+ M + A + Y R+I+IN F+ ++S L ++D
Sbjct: 75 ---TFADAYSNMGNTL----KEMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDS 124
Query: 226 KLFS---ASYS-GLEYD------YRGLIHVYECLENFEKMTEFTNKLSEWK 266
ASY L+ Y L H + + ++ E KL
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
Score = 31.7 bits (71), Expect = 0.31
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191
A N+ + + +EA R+ KA+ + E + +LAS+ +
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVL-QQQGKL 59
Query: 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225
+A Y +I I+ F+ +YS + +++
Sbjct: 60 QEALMHYKEAIRISPT---FADAYSNMGNTLKEM 90
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 37.1 bits (87), Expect = 0.005
Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 39/170 (22%)
Query: 39 ELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSN 98
ELA+ Y +G F + RH + + P+N + + I +
Sbjct: 4 ELAHREY----QAGDFEAAERHCMQLWRQE----PDNT----GVLLLLSSIHFQC----- 46
Query: 99 ELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKA 158
+ + A+ + A+ Y N+G +Y+ + EA A
Sbjct: 47 -----RRLDRSAHFSTLAIKQNPLL--------AEAYSNLGNVYKERGQLQEAIEHYRHA 93
Query: 159 IAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNL 208
+ + K D+ G +LA+ + A + Y +++ N +L
Sbjct: 94 LRL------KPDFIDGYI--NLAAAL-VAAGDMEGAVQAYVSALQYNPDL 134
Score = 33.7 bits (78), Expect = 0.061
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 20/121 (16%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
A + A+ L + Y N+G + + + FD A L+A+++
Sbjct: 185 IWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--- 233
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225
+ V G+LA +Y Y A Y R+IE+ + F +Y L ++
Sbjct: 234 --PNHAVV---HGNLACVY-YEQGLIDLAIDTYRRAIELQPH---FPDAYCNLANALKEK 284
Query: 226 K 226
Sbjct: 285 G 285
Score = 32.5 bits (75), Expect = 0.13
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 22/124 (17%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ A + AL LS H A +GN+ +Y D A +AI ++
Sbjct: 219 FDRAVAAYLRALSLSPNH--------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--- 267
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLE-YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRD 224
+ ++ + +AE Y ++ + + S + L R+
Sbjct: 268 --PHFPDAYCNLANA-----LKEKGSVAEAEDCYNTALRLCPT---HADSLNNLANIKRE 317
Query: 225 LKLF 228
Sbjct: 318 QGNI 321
Score = 32.1 bits (74), Expect = 0.19
Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 35/159 (22%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
G+ E+ H A++ L P+ + A L +
Sbjct: 78 KERGQLQEAIEHYRHALR----LKPDFI----DGYINLAAALVAAGD----------MEG 119
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A + +AL + ++G L +++ + +EA+ LKAI +
Sbjct: 120 AVQAYVSALQYNPDL--------YCVRSDLGNLLKALGRLEEAKACYLKAIETQP----- 166
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
++ V S +L ++ E A + +++ ++ N
Sbjct: 167 -NFAVAWS--NLGCVF-NAQGEIWLAIHHFEKAVTLDPN 201
Score = 29.4 bits (67), Expect = 1.3
Identities = 13/123 (10%), Positives = 32/123 (26%), Gaps = 20/123 (16%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
++ AE + + ++ ++ D + AI
Sbjct: 15 FEAAERHCMQLWRQEPDN--------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---- 62
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225
S +L ++Y + +A + Y ++ + + F Y L
Sbjct: 63 --NPLLAEAYS--NLGNVY-KERGQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAA 114
Query: 226 KLF 228
Sbjct: 115 GDM 117
Score = 29.4 bits (67), Expect = 1.6
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+EA L++ AL + + A + N+ + Q K EA +AI I
Sbjct: 321 IEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 36.9 bits (86), Expect = 0.006
Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 22/178 (12%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
Y G S + ++ L ++ AH + L ++ + ELI Y +
Sbjct: 199 YQLGDHELSLSEVRECLK----LDQDHKRCF--AHYKQVKKLNKLIESAEELIRDGRYTD 252
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
A +++ + K T + I + +K EA R+ + + ++
Sbjct: 253 ATSKYESVM----KTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP----- 303
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLK 226
D L A Y Y +A + Y + E N+N GLE R LK
Sbjct: 304 -DNVNALK--DRAEAY-LIEEMYDEAIQDYEAAQEHNEN---DQQIREGLEKAQRLLK 354
Score = 26.9 bits (60), Expect = 8.5
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 6/82 (7%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIK------EKVLGKDDYEVGLSVGHLASLYN 185
G L K DEAE K + ++ + + +L
Sbjct: 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130
Query: 186 YHMLEYHKAEKLYFRSIEINDN 207
+ +Y A + +E+
Sbjct: 131 FDGADYTAAITFLDKILEVCVW 152
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 36.7 bits (85), Expect = 0.008
Identities = 19/157 (12%), Positives = 41/157 (26%), Gaps = 35/157 (22%)
Query: 51 SGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAE 110
+ A++ P++ + A + A + E
Sbjct: 2 TADGPRELLQLRAAVR----HRPQDFV----AWLMLADAELGM----------GDTTAGE 43
Query: 111 LLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD 170
+ Q L L H + +GR+ + Q+ EA + +A +
Sbjct: 44 MAVQRGLALHPGH--------PEAVARLGRVRWTQQRHAEAAVLLQQASDA------APE 89
Query: 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
+ L + A Y R+ ++
Sbjct: 90 HPGIAL--WLGHAL-EDAGQAEAAAAAYTRAHQLLPE 123
Score = 34.4 bits (79), Expect = 0.047
Identities = 20/176 (11%), Positives = 42/176 (23%), Gaps = 38/176 (21%)
Query: 34 AIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEI 93
+A LA A G T ++ + L P + A +
Sbjct: 23 FVAWLMLADAEL----GMGDTTAGEMAVQRGLA----LHPGHP----EAVARLGRVRWTQ 70
Query: 94 ALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAER 153
Q + EA +L Q A + +H +G + + + A
Sbjct: 71 ----------QRHAEAAVLLQQASDAAPEH--------PGIALWLGHALEDAGQAEAAAA 112
Query: 154 MQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLK 209
+A + ++ + L + + +
Sbjct: 113 AYTRAHQLLP-----EEPYI---TAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 35.4 bits (82), Expect = 0.020
Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 19/148 (12%)
Query: 62 EKAIQTFKNLL---PENHLLLTSAHRVKALILEEIAL-DSNELISVQFYKEAELLHQNAL 117
+A + ++ L P L+T A + L+S + E + L A+
Sbjct: 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 208
Query: 118 VLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSV 177
L +G L+ ++D+A A++++ +DY + +
Sbjct: 209 RLDPTSID------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKL 257
Query: 178 GHLASLYNYHMLEYHKAEKLYFRSIEIN 205
G A+L N + E +A Y R++E+
Sbjct: 258 G--ATLANGNQSE--EAVAAYRRALELQ 281
Score = 30.8 bits (70), Expect = 0.49
Identities = 16/180 (8%), Positives = 44/180 (24%), Gaps = 32/180 (17%)
Query: 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91
+ + + + + G + E A+Q P++ A +
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKHM----EAWQYLGTTQA 109
Query: 92 EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEA 151
E NE A + L L + + + + +A
Sbjct: 110 E-----NEQ-----ELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQA 151
Query: 152 ERMQLKAIAIKEK------VLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205
+ + + GL + + ++L+ ++ ++
Sbjct: 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211
Score = 28.8 bits (65), Expect = 2.5
Identities = 8/78 (10%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH-LASLYNY------H 187
N+G ++ EA L+A+ ++ + G ++++
Sbjct: 288 RYNLGISCINLGAHREAVEHFLEALNMQ-----RKSRGPRGEGGAMSENIWSTLRLALSM 342
Query: 188 MLEYHKAEKLYFRSIEIN 205
+ + R +
Sbjct: 343 LGQSDAYGAADARDLSTL 360
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 34.6 bits (80), Expect = 0.026
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
Y+EA A +L + ++ + N+G + M+K +A+ K++ +
Sbjct: 121 YEEAYQRLLEASQDTLYP------ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---- 170
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
+ +A L Y EY A + Y +
Sbjct: 171 --NRNQPSVAL--EMADLL-YKEREYVPARQYYDLFAQGGGQ 207
Score = 29.9 bits (68), Expect = 0.84
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ + ++Q+ + A+ KA+A
Sbjct: 74 HAALAVVFQTEMEPKLADEEYRKALASD 101
Score = 28.8 bits (65), Expect = 2.0
Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 126 ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185
+ + Y +G Y ++A+ KA+ I + ++ +
Sbjct: 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----PSSADAHAALA----VVF 81
Query: 186 YHMLEYHKAEKLYFRSIEINDN 207
+E A++ Y +++ +
Sbjct: 82 QTEMEPKLADEEYRKALASDSR 103
Score = 26.5 bits (59), Expect = 9.5
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
Y A + + Q A+ RL + + D A L+ +
Sbjct: 191 YVPARQYYDLFA--------QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 33.8 bits (77), Expect = 0.047
Identities = 20/144 (13%), Positives = 32/144 (22%), Gaps = 12/144 (8%)
Query: 104 QFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE 163
+ A A K N + Y + ++S A AI I
Sbjct: 51 KELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT 108
Query: 164 KVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYR 223
L + + +Y KA Y + E
Sbjct: 109 H--RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ--------DQSVALSN 158
Query: 224 DLKLFSASYSGLEYDYRGLIHVYE 247
+ A L+ Y +Y
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYS 182
Score = 29.6 bits (66), Expect = 1.3
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 104 QFYKEAELLHQNALVLSLKHFGENNV---QTAKHYGNIGRLYQSMQKFDEAERMQLKAIA 160
+ K AE + G ++ + A +Y+ ++ + A LKA
Sbjct: 6 ELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAAD 65
Query: 161 IKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFS 212
++K ++ E G + + A +I+I + F
Sbjct: 66 YQKKA--GNEDEAGNTYVEAYKCF-KSGGNSVNAVDSLENAIQIFTHRGQFR 114
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 33.8 bits (77), Expect = 0.052
Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 21/165 (12%)
Query: 31 LQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALIL 90
+ + + L+ + G + EKA Q E + R++A +L
Sbjct: 90 HYALWSLIQQSEILF----AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145
Query: 91 EEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDE 150
L EAE ++ + + + Q + + + + D
Sbjct: 146 WA----WARL------DEAEASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDN 192
Query: 151 AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAE 195
A + E +LG Y Y + KA
Sbjct: 193 ARSQLNRL----ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233
Score = 32.3 bits (73), Expect = 0.21
Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 37/214 (17%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHL 77
A +L + A L+ + R E+ A I+ + P+ L
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLW----AWARLDEAEASARSGIEVLSSYQPQQQL 174
Query: 78 LLTSAHRVKALI----------------LEEIALDSNELISVQFYKEAELLH-------- 113
+ LE + + +
Sbjct: 175 ---QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231
Query: 114 ---QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDD 170
N L + K NN + NI R + +F+ AE + + + D
Sbjct: 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291
Query: 171 YEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEI 204
L + L LY + A+++ ++++
Sbjct: 292 LNRNLLL--LNQLY-WQAGRKSDAQRVLLDALKL 322
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 33.6 bits (76), Expect = 0.062
Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 4/161 (2%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
Y+ L + L L + Q I +Y + + + + E +
Sbjct: 131 YEYCILELKKLLNQQLTGI--DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225
D+ E + V + + Y Y ++ ++IEI+ + + L
Sbjct: 189 --HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246
Query: 226 KLFSASYSGLEYDYRGLIHVYECLENFEKMTEFTNKLSEWK 266
+ + +E Y+ ++ LE NK+S +
Sbjct: 247 RKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLE 287
Score = 26.7 bits (58), Expect = 9.1
Identities = 9/104 (8%), Positives = 28/104 (26%), Gaps = 3/104 (2%)
Query: 119 LSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVG 178
L + + Q + + ++ K + + D L +
Sbjct: 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT---GIDVYQNLYIE 158
Query: 179 HLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHY 222
+ + K L+ + ++ + L + Y++
Sbjct: 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 33.5 bits (77), Expect = 0.074
Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 17/110 (15%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ E+E + + FD A + A ++E
Sbjct: 360 FTESEAFFNETK--------LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV- 410
Query: 166 LGKDDYEVGLSVGHLASLYNYHML--------EYHKAEKLYFRSIEINDN 207
K +G +G L +++ A KL ++ E++
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460
Score = 31.6 bits (72), Expect = 0.33
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191
Y + G++Y +Q + A+ KA ++ + LA L Y ++
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSL------NPENVYPYI--QLACLL-YKQGKF 360
Query: 192 HKAEKLYFRSIEINDN 207
++E + +
Sbjct: 361 TESEAFFNETKLKFPT 376
Score = 30.1 bits (68), Expect = 0.87
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 13/102 (12%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ E LS A N G + + + F+EA + AI +
Sbjct: 3 HMNGEPDIAQLKGLSP----SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-- 56
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
+ V S ++++ Y + K + +++EI +
Sbjct: 57 ----NEPVFYS--NISACY-ISTGDLEKVIEFTTKALEIKPD 91
Score = 29.3 bits (66), Expect = 2.0
Identities = 19/179 (10%), Positives = 49/179 (27%), Gaps = 17/179 (9%)
Query: 29 ENLQVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKAL 88
+L V + A ++ + + + + + TS
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA--SFF 171
Query: 89 ILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKF 148
+ + L+ + + + Y A L +AL + + L +S +
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQR------LYSATDEGYLVANDLLTKSTDMY 225
Query: 149 DEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
++E L++ + + + A+ L SI ++
Sbjct: 226 HSLLSANTVDDPLREN--------AALALCYTGIFH-FLKNNLLDAQVLLQESINLHPT 275
Score = 28.5 bits (64), Expect = 2.8
Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 52 GRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAEL 111
G F + + + A + + + + H+ + KA IL + + + + A
Sbjct: 392 GDFDTAIKQYDIAKR-LEEVQEKIHVGIGPLIG-KATILARQSSQDPTQLDEEKFNAAIK 449
Query: 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
L A L + ++ + + +L M+K DEA + + +
Sbjct: 450 LLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 33.7 bits (77), Expect = 0.080
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ A QNAL+L K A N+G Y+ ++ +D A + + +
Sbjct: 491 MQTAINHFQNALLLVKKTQSNEKPWAATWA-NLGHAYRKLKMYDAAIDALNQGLLLS--- 546
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
+D V + +A +Y H A S+ I+ N
Sbjct: 547 --TNDANVHTA---IALVY-LHKKIPGLAITHLHESLAISPN 582
Score = 31.3 bits (71), Expect = 0.35
Identities = 7/81 (8%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
Y +G + + A + A+ + D + + L + ++ + A
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALF-----QYDPLL---LNELGVVA-FNKSDMQTA 494
Query: 195 EKLYFRSIEINDNLKLFSASY 215
+ ++ + + +
Sbjct: 495 INHFQNALLLVKKTQSNEKPW 515
Score = 29.8 bits (67), Expect = 1.2
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 19/101 (18%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+ L+ + + + + + A + +G Y + K EA R K+ +
Sbjct: 355 KNKLYLISNDLV--------DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--- 403
Query: 166 LGKDDYEVGLSVGHLASLYNYHML-EYHKAEKLYFRSIEIN 205
+ H + + E+ +A Y + +
Sbjct: 404 --PQFGPAWIGFAHS-----FAIEGEHDQAISAYTTAARLF 437
Score = 27.5 bits (61), Expect = 6.4
Identities = 30/194 (15%), Positives = 62/194 (31%), Gaps = 18/194 (9%)
Query: 37 EDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALD 96
A+ L +G + ++ K ++ + + A L ++
Sbjct: 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS---------ACRYLAAFCLVKLYDW 166
Query: 97 SNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQL 156
L + +NA L ++ G ++ + Y G++Y ++ FD A+
Sbjct: 167 QGALNLLGETNPFRKDEKNANKLLMQD-GGIKLEASMCY-LRGQVYTNLSNFDRAKECYK 224
Query: 157 KAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYS 216
+A+ + YE + L E+ KL + + D L S
Sbjct: 225 EALMVDA-----KCYEAFDQLVSNHLLTADE--EWDLVLKLNYSTYSKEDAAFLRSLYML 277
Query: 217 GLEYHYRDLKLFSA 230
L + +L A
Sbjct: 278 KLNKTSHEDELRRA 291
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 32.8 bits (74), Expect = 0.14
Identities = 23/195 (11%), Positives = 43/195 (22%), Gaps = 34/195 (17%)
Query: 18 ALKLKQVLFGSENLQVAIAEDELAYALYV------NEYSSGRFTESRRHAEKAIQTFKNL 71
AL E LQ + + + + +Q
Sbjct: 173 ALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ----S 228
Query: 72 LPENHLLLTSAHRVKALILEEIALDSNELISV-QFYKEAELLHQNALVLSLKHFGENNVQ 130
PE V + + LD +L ++ L
Sbjct: 229 SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL-------------PELNN 275
Query: 131 TAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE 190
+ Y K DE+ + I ++ L+ L +Y
Sbjct: 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW---------LNYVLLGKVY-EMKGM 325
Query: 191 YHKAEKLYFRSIEIN 205
+A Y + +
Sbjct: 326 NREAADAYLTAFNLR 340
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 32.3 bits (74), Expect = 0.17
Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 16/144 (11%)
Query: 62 EKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSL 121
+ A + KN + + + + K S + + + L+ A +
Sbjct: 150 QDACEALKNWI-KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN- 207
Query: 122 KHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLA 181
++ +G L+ +F+ A A+ ++ +DY + +G A
Sbjct: 208 -----GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-----EDYSLWNRLG--A 255
Query: 182 SLYNYHMLEYHKAEKLYFRSIEIN 205
+L N E +A + Y R++EI
Sbjct: 256 TLANGDRSE--EAVEAYTRALEIQ 277
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 31.8 bits (73), Expect = 0.21
Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 15/102 (14%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
E+ AL N G +F AE +++A
Sbjct: 93 PAESMAYFDKALADPTYP------TPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---- 142
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
+ + LA + A+ + + +
Sbjct: 143 --QPQFPPAFK--ELARTK-MLAGQLGDADYYFKKYQSRVEV 179
Score = 30.3 bits (69), Expect = 0.60
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 126 ENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN 185
E Q + + Y Q + +A A+ + L
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-----PKNELAWLVRA----EIY 52
Query: 186 YHMLEYHKAEKLYFRSIEINDN 207
++ KA++ + +++ I +
Sbjct: 53 QYLKVNDKAQESFRQALSIKPD 74
Score = 29.9 bits (68), Expect = 0.79
Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 46/179 (25%)
Query: 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91
QV+ + +LA + ++ E A++ P+N A V+A I +
Sbjct: 6 QVSNIKTQLAMEYM----RGQDYRQATASIEDALK----SDPKNE----LAWLVRAEIYQ 53
Query: 92 EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEA 151
++ +A+ + AL + NN +YG L + + E+
Sbjct: 54 Y----------LKVNDKAQESFRQALSIKPDSAEINN-----NYGWF--LCGRLNRPAES 96
Query: 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN-----YHMLEYHKAEKLYFRSIEIN 205
KA+A + + N ++ AE RS+
Sbjct: 97 MAYFDKALAD----PTYPTPYI--------ANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 32.0 bits (73), Expect = 0.22
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE- 190
+ + FD+A + AI ++ K L + VG L +E
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENK-LDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 191 YHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLK 226
+ +A L ++ +++ + GL +
Sbjct: 431 FIEATNLLEKASKLDPR---SEQAKIGLAQMKLQQE 463
Score = 30.1 bits (68), Expect = 0.93
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191
+ Y + G++ +Q +D+A + KA + + LA L Y ++
Sbjct: 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKEL------DPENIFPYI--QLACLA-YRENKF 354
Query: 192 HKAEKLYFRSIEINDN 207
E L+ +
Sbjct: 355 DDCETLFSEAKRKFPE 370
Score = 27.0 bits (60), Expect = 8.7
Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 11/122 (9%)
Query: 86 KALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSM 145
L + + + + +A L + L + + + + A + G
Sbjct: 192 NGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE-DEKLKEKLAISLEHTGIFKFLK 250
Query: 146 QKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEIN 205
A KAI + +V S ++A + + + + ++++++
Sbjct: 251 NDPLGAHEDIKKAIELFPRV---------NSYIYMALIM-ADRNDSTEYYNYFDKALKLD 300
Query: 206 DN 207
N
Sbjct: 301 SN 302
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 31.3 bits (71), Expect = 0.26
Identities = 11/106 (10%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 103 VQFYKEA-ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161
V ++++ L + + +N+ ++K + Y+ + +D+A + +
Sbjct: 24 VSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83
Query: 162 KEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
+ L A + + A ++Y + +++ +
Sbjct: 84 ------APNNVDCLE--ACAEMQ-VCRGQEKDALRMYEKILQLEAD 120
Score = 28.6 bits (64), Expect = 2.2
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 9/86 (10%)
Query: 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKE--------KVLGKDDYEVGLSVGHLA 181
Q+ + +A + IA+ + K+ LA
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 182 SLYNYHMLEYHKAEKLYFRSIEINDN 207
Y Y KA Y ++ N
Sbjct: 62 LAY-KKNRNYDKAYLFYKELLQKAPN 86
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 29.7 bits (68), Expect = 0.26
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ N+G Y +DEA KA+ +
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELD 73
Score = 29.3 bits (67), Expect = 0.36
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
A+ + N+G Y +DEA KA+ +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 31.5 bits (72), Expect = 0.30
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
IG Y AER +A++I +D V + + + + E+ A
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALSIA-----PEDPFV---MHEVGVVA-FQNGEWKTA 212
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHY 222
EK + ++E +
Sbjct: 213 EKWFLDALEKIKAIGNEVTVDKWEPLLN 240
Score = 31.5 bits (72), Expect = 0.31
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLL-LTSAHRVKALILEEIALDSNELISVQFYK 107
+ +G + + + A++ K + E + + ++ + Y
Sbjct: 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL----------KKYA 253
Query: 108 EAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
EA H+ ALVL ++ A Y IG ++ M F+ A A+ ++
Sbjct: 254 EALDYHRQALVLIPQN--------ASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Score = 29.2 bits (66), Expect = 1.7
Identities = 20/178 (11%), Positives = 53/178 (29%), Gaps = 38/178 (21%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQ---- 104
Y + F + ++ + + + + E+ S++L+ +
Sbjct: 33 YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK--ANELFYLSHKLVDLYPSNP 90
Query: 105 --------FYKEAELLHQNALV-----LSLK-HFGENNVQTAKHYGNIGRLYQSMQKFDE 150
+Y +++A +L+ +G + G + + D+
Sbjct: 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA-------WIAYGHSFAVESEHDQ 143
Query: 151 AERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLE-YHKAEKLYFRSIEINDN 207
A A + K + L +G Y + AE+ + +++ I
Sbjct: 144 AMAAYFTAAQLM-----KGCHLPMLYIGLE-----YGLTNNSKLAERFFSQALSIAPE 191
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 29.7 bits (67), Expect = 0.39
Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+A ++ A+ L+ A+ Y +G ++++ ++ +AE + +
Sbjct: 6 EAQAVPYYEKAIASGLQG-----KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--- 57
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDL 225
+ + + A + Y++ Y + +L + I + + + + ++ L
Sbjct: 58 --PNHQALRV---FYAMVL-YNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 30.6 bits (70), Expect = 0.49
Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 45/181 (24%)
Query: 32 QVAIAEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILE 91
+ + G + ++ KAI+ E+ + A +L
Sbjct: 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----ENKEDA----IPYINFANLLS 68
Query: 92 EIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEA 151
+ + A + AL L + A Y G +Y + + EA
Sbjct: 69 SV----------NELERALAFYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEA 110
Query: 152 ERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN-----YHMLEYHKAEKLYFRSIEIND 206
+ M KA+ ++ ++ Y + + A R++E+N+
Sbjct: 111 KDMFEKALRAG-----MENGDL---------FYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 207 N 207
N
Sbjct: 157 N 157
Score = 27.5 bits (62), Expect = 4.7
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 8/57 (14%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
EA H A + N G Y + ++A M KAI I+
Sbjct: 175 LDEALSQFAAVTEQDPGH--------ADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 30.6 bits (70), Expect = 0.50
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+AE + AL +L+ + + LY SM + DEA KA+
Sbjct: 134 RDKAEASLKQAL--ALEDT-------PEIRSALAELYLSMGRLDEALAQYAKALEQA 181
Score = 28.3 bits (64), Expect = 2.7
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
Y A L + AL + + + + R + + A +A
Sbjct: 21 YDAALTLFERALKENPQD--------PEALYWLARTQLKLGLVNPALENGKTLVART 69
Score = 27.1 bits (61), Expect = 6.4
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
++ +G ++ ++D A + +A+
Sbjct: 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN 35
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 29.7 bits (68), Expect = 0.53
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ N+G Y +DEA KA+ +
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELD 99
Score = 28.1 bits (64), Expect = 1.7
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
A+ + N+G Y +DEA KA+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 31
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 29.3 bits (67), Expect = 0.62
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ N+G Y +DEA KA+ +
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELD 107
Score = 28.5 bits (65), Expect = 1.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ N+G Y +DEA KA+ +
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELD 73
Score = 28.1 bits (64), Expect = 1.6
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ N+G Y +DEA KA+ +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELD 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 30.3 bits (69), Expect = 0.66
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
YG IG + + F A + K I D + L Y Y+ EY KA
Sbjct: 111 YGQIGSYFYNKGNFPLAIQYMEKQIRPT-----TTDPK---VFYELGQAY-YYNKEYVKA 161
Query: 195 EKLYFRSIEINDN 207
+ + + +E+ N
Sbjct: 162 DSSFVKVLELKPN 174
Score = 29.9 bits (68), Expect = 0.85
Identities = 12/104 (11%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 62 EKAIQTFKNLL---PENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALV 118
KA +F +L P ++ + +A D+ + ++ +Y++ +
Sbjct: 159 VKADSSFVKVLELKPNIYI----GYLWRARANAAQDPDTKQGLAKPYYEKL-------IE 207
Query: 119 LSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ + + + I Y + +A+ +A+
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251
Score = 29.9 bits (68), Expect = 0.92
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
+ +G+ Y +++ +A+ +K + +K + Y L A+ + A
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELK-----PNIYIGYLWRA-RANAAQDPDTKQGLA 198
Query: 195 EKLYFRSIEINDNLKLFSASYSGLEYHYR 223
+ Y + IE+ Y
Sbjct: 199 KPYYEKLIEVCAPGGAKYKDELIEANEYI 227
Score = 28.0 bits (63), Expect = 4.0
Identities = 15/159 (9%), Positives = 40/159 (25%), Gaps = 32/159 (20%)
Query: 49 YSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELISVQFYKE 108
+ + + E+ K N + +A+ E+A ++ Y
Sbjct: 14 FKNNNYAEAIEVFNKLEAKKYN--------SPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 109 AELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGK 168
+ + G++ + A + A+
Sbjct: 66 KV---------------NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-----T 105
Query: 169 DDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
++ G + S + Y+ + A + + I
Sbjct: 106 TRLDM---YGQIGSYF-YNKGNFPLAIQYMEKQIRPTTT 140
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 30.4 bits (68), Expect = 0.75
Identities = 21/169 (12%), Positives = 56/169 (33%), Gaps = 29/169 (17%)
Query: 42 YALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHRVKALILEEIALDSNELI 101
+ + E + + + + EK +Q + +L +AL+L+ AL+
Sbjct: 65 FETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSA------QVEAQALMLKGKALNVTP-- 116
Query: 102 SVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161
+ EAE+L A+ L + + + +G +Y A A+
Sbjct: 117 --DYSPEAEVLLSKAVKLEPEL--------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166
Query: 162 KEKVLGKDDYEVGLSVGHL-----ASLYNYHMLEYHKAEKLYFRSIEIN 205
+ + ++ + + H + + +++++
Sbjct: 167 CK------NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209
Score = 28.4 bits (63), Expect = 3.0
Identities = 16/171 (9%), Positives = 41/171 (23%), Gaps = 19/171 (11%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
A AL N+ + + ++ R A+ +
Sbjct: 153 VTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-- 210
Query: 166 LGKDDYE----VGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYH 221
D +G + L + +A Y ++ +++ +
Sbjct: 211 ---LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267
Query: 222 YRDLKLFS---ASYS-------GLEYDYRGLIHVYECLENFEKMTEFTNKL 262
++ + + +S + + E L + E K
Sbjct: 268 HKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.88
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 8/29 (27%)
Query: 143 QSMQKFDEAERMQL------KAIAIKEKV 165
Q+++K +A ++L A+AIK +
Sbjct: 20 QALKKL-QA-SLKLYADDSAPALAIKATM 46
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 29.7 bits (68), Expect = 0.88
Identities = 9/84 (10%), Positives = 23/84 (27%), Gaps = 19/84 (22%)
Query: 127 NNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYN- 185
N+ +Y + G + ++ +A + + D +V +
Sbjct: 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----AFDVDV---------ALHL 48
Query: 186 ----YHMLEYHKAEKLYFRSIEIN 205
+ +L RS+
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADA 72
Score = 29.3 bits (67), Expect = 1.1
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
L + +L + + K +G Y +QK+D A + +K
Sbjct: 58 VDRGTELLERSLADAPDN--------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Score = 27.8 bits (63), Expect = 3.0
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ I Y+ M + +EA KA +
Sbjct: 147 HRAIAFSYEQMGRHEEALPHFKKANELD 174
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 28.4 bits (64), Expect = 1.4
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
Y N +Y +KF E + KA+ + + D + ++ + + + A
Sbjct: 45 YNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-ADYKLIAKAMSRAGNAF-QKQNDLSLA 102
Query: 195 EKLYFRSIEINDN 207
+ + RS+ +
Sbjct: 103 VQWFHRSLSEFRD 115
Score = 28.0 bits (63), Expect = 1.9
Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
+ E + A+ + + + AK G +Q A + ++++
Sbjct: 58 FAECVQFCEKAVEVGRETRADYK-LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 27.7 bits (62), Expect = 2.2
Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
N +Y +++ + KAI + + +D ++ + + + Y + +Y A
Sbjct: 41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQIAKAYARIGNSY-FKEEKYKDA 98
Query: 195 EKLYFRSIEINDN 207
Y +S+ +
Sbjct: 99 IHFYNKSLAEHRT 111
Score = 27.3 bits (61), Expect = 3.3
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAI 161
Y + L + A+ + + E+ Q AK Y IG Y +K+ +A K++A
Sbjct: 54 YNKCRELCEKAIEVG-RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 28.1 bits (63), Expect = 2.7
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 32/140 (22%)
Query: 121 LKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHL 180
L F ++ NIG +Y ++ EAE+ ++I + HL
Sbjct: 26 LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---------------HL 70
Query: 181 ASLYN------YHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSG 234
A Y Y +Y A K ++ Y+ L L ++
Sbjct: 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG---------NQLIDYKILGLQFKLFAC 121
Query: 235 LEYDYRGLIHVYECLENFEK 254
+Y E ++K
Sbjct: 122 EVLYNIAF--MYAKKEEWKK 139
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 28.4 bits (64), Expect = 2.8
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 121 LKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
L + + A+ G LY S+ A +A+AI+
Sbjct: 32 LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73
Score = 28.4 bits (64), Expect = 2.9
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKA 194
+ N G + A+ L +D L + L+ +A
Sbjct: 114 HLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDPFRSLWLY-----LAEQKLDEKQA 163
Query: 195 EKLYFRSIEINDNLK 209
+++ + E +D +
Sbjct: 164 KEVLKQHFEKSDKEQ 178
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical;
PFAM04748, structural PSI, protein structure initiative;
2.50A {Bacillus halodurans} SCOP: c.6.2.7
Length = 245
Score = 28.1 bits (62), Expect = 2.9
Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 21/115 (18%)
Query: 36 AEDELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLL----TSAHRVKALILE 91
A D++ YA+ +N + + E+ + ++ K E + + TS H + + E
Sbjct: 92 AFDDIPYAVGLNNHMGSKIVENEKIMRAILEVVK----EKNAFIIDSGTSPHSLIPQLAE 147
Query: 92 EIAL-------------DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK 133
E+ + S + + K A+ Q + + + H G +T
Sbjct: 148 ELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYA 202
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 28.4 bits (64), Expect = 3.2
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH--LASLYNYH 187
+ + + + ++ E + A+ + +D ++ H L LY
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-----NDAQL-----HASLGVLY-NL 184
Query: 188 MLEYHKAEKLYFRSIEIN 205
Y A R++E+
Sbjct: 185 SNNYDSAAANLRRAVELR 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 26.8 bits (60), Expect = 3.7
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 135 YGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164
Y ++G+LY+ + + D+A + I + +
Sbjct: 44 YYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Score = 26.1 bits (58), Expect = 5.8
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 18/101 (17%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191
+ + + A + + + DY HL LY +
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETDP------DYVGTYY--HLGKLY-ERLDRT 57
Query: 192 HKAEKLYFRSIEIN---------DNLKLFSASYSGLEYHYR 223
A Y + IE+ L+ GLE+H+
Sbjct: 58 DDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHH 98
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 26.8 bits (59), Expect = 6.0
Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 17/156 (10%)
Query: 72 LPENHLLLTSAHRVKALILEEIALDSNELISVQFYKEAELLHQNALVLSLKHFGENNVQT 131
L + + + + LE++ + Y++A + Q VL +
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYD 54
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEY 191
++ + +G Q+M ++D A + + E
Sbjct: 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-----IXEPRFPFHAAEC----LLQXGEL 105
Query: 192 HKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKL 227
+AE F + E+ N F + + +KL
Sbjct: 106 AEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 26.7 bits (59), Expect = 7.0
Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 106 YKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKV 165
+EAE+ + + + + + +YQ ++F +A + A A+
Sbjct: 52 IEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--- 100
Query: 166 LGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLE 219
K+DY H + KA++ + I+ +++ KL + S L+
Sbjct: 101 --KNDYTPVF---HTGQCQ-LRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLD 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 26.7 bits (59), Expect = 7.1
Identities = 11/93 (11%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 114 QNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEV 173
A + +L+ N Q ++ + +G Y + + +A+ ++ ++ E+
Sbjct: 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-----ENAEL 80
Query: 174 GLSVGH-LASLYNYHMLEYHKAEKLYFRSIEIN 205
++ L + HM + + +++ ++
Sbjct: 81 YAALATVLYYQASQHMTA--QTRAMIDKALALD 111
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 25.8 bits (57), Expect = 7.4
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157
ELI+ + A + L V + Y +G Y+ + + +A
Sbjct: 8 KELINQGDIENALQALEEFLQT-------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 158 AIAIK 162
AI +
Sbjct: 61 AIELN 65
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 27.1 bits (61), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 157 KAIAIKEKVLGKDDYEVGLSVGHLASL 183
KA I + +LG + YEV S+GH+ L
Sbjct: 16 KAKTI-KSILGNE-YEVFASMGHIIDL 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.373
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,524,596
Number of extensions: 268640
Number of successful extensions: 1001
Number of sequences better than 10.0: 1
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 226
Length of query: 303
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 210
Effective length of database: 4,105,140
Effective search space: 862079400
Effective search space used: 862079400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)