RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4339
(303 letters)
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 29.3 bits (65), Expect = 0.26
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 98 NELISVQFYKEAELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLK 157
NEL+SV+ + E Q+ G + T Y + + + +
Sbjct: 7 NELVSVEDLLKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE 61
Query: 158 AIAIKEKVLGKDDYEVGLSVGHLASLYNYHMLEYHKAEKLYFRSIEINDN 207
+ K +D ++ NY + EY KA K ++
Sbjct: 62 LLPKGSKEEQRDYV-------FYLAVGNYRLKEYEKALKYVRGLLQTEPQ 104
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 29.6 bits (65), Expect = 0.47
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 132 AKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171
A +Y+ ++ + A LKA ++K +D+
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA 76
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 28.0 bits (62), Expect = 1.4
Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 38 DELAYALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLL---TSAHRVKALILEEIA 94
D++ YA+ +N + + E+ + ++ K +N ++ TS H + + EE+
Sbjct: 92 DDIPYAVGLNNHMGSKIVENEKIMRAILEVVKE---KNAFIIDSGTSPHSLIPQLAEELE 148
Query: 95 L-------------DSNELISVQFYKEAELLHQNALVLSLKHFGENNVQTAK 133
+ S + + K A+ Q + + + H G +T
Sbjct: 149 VPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYA 200
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 28.1 bits (61), Expect = 1.4
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 10/130 (7%)
Query: 42 YALYVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAHR-----VKALILEEIALD 96
L Y G + +AI+ + P+ + L +A + +A AL
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 97 SNELISVQFYKEAELLH-QNALVLSLKHFG---ENNVQTAKHYGNIGRLYQSMQKFDEAE 152
+ A + Q + +++ + E + A + N+ + Q K EA
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 153 RMQLKAIAIK 162
+AI I
Sbjct: 360 MHYKEAIRIS 369
Score = 26.9 bits (58), Expect = 3.5
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 120 SLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEK 164
+ + A +GN+ +Y D A +AI ++
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 26.7 bits (58), Expect = 2.7
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 110 ELLHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
L N L+ + + + NI +Y +++ +AE A ++K
Sbjct: 98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 27.1 bits (59), Expect = 3.0
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 184 YNYHMLEYHKAEKLYFRSIEINDNLKLFSASYSGLEYHYRDLKLFSASYSGLEYDYRGLI 243
+ L + +L +++ I D+ K F+A ++ + K+ + E D L+
Sbjct: 107 MHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKT-----KMVCETDVPSEDDPTQLV 161
Query: 244 HVYECLENFEKMT-EFTNKLSEWKILRETNELNEPECHI 281
C + + + WK R T + +EPE +
Sbjct: 162 SRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRV 200
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 26.7 bits (57), Expect = 3.8
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 120 SLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDYEVGLSVGH 179
+ + E + N+G ++ EA L+A+ ++ K G +S
Sbjct: 228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 287
Query: 180 LASLYN--YHMLEYHKAEKLYFRSIEI 204
++L + + R +
Sbjct: 288 WSTLRLALSMLGQSDAYGAADARDLST 314
>d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-3 [TaxId: 123217]}
Length = 123
Score = 25.1 bits (54), Expect = 6.6
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Query: 112 LHQNALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIKEKVLGKDDY 171
+ A+V +F + +++ E E+ A+ L Y
Sbjct: 3 PQKRAVVNQRLYFDMGTLYQRFADYYYPQIFAKQPANAENEKKMKDAVDFLNTFLDGHKY 62
Query: 172 EVGLSVGHLASLYNYHMLEYHKAEKLYF 199
G S+ +A L + +
Sbjct: 63 VAGDSL-TIADLTVLATVSTYDVAGFEL 89
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 25.4 bits (55), Expect = 8.8
Identities = 13/127 (10%), Positives = 31/127 (24%), Gaps = 11/127 (8%)
Query: 45 YVNEYSSGRFTESRRHAEKAIQTFKNLLPENHLLLTSAH-------RVKALILEEIALDS 97
+ N S G+ ++ +AI+ R +++ I L
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 98 NELISVQFYKEAELLHQN---ALVLSLKHFGENNVQTAKHYGNIGRLYQSMQKFDEAERM 154
L + Q + + L Q +++ +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121
Query: 155 QLKAIAI 161
L+ +
Sbjct: 122 ALQIEEL 128
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 25.2 bits (53), Expect = 9.4
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 130 QTAKHYGNIGRLYQSMQKFDEAERMQLKAIAIK 162
++ +G+ Y S+ D A + A+A
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.373
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,087,878
Number of extensions: 49400
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 43
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)