Query psy434
Match_columns 307
No_of_seqs 175 out of 443
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 23:04:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3586|consensus 100.0 8.8E-69 1.9E-73 512.7 16.9 188 51-259 84-277 (437)
2 cd00182 TBOX T-box DNA binding 100.0 2E-66 4.4E-71 463.3 16.1 179 51-254 6-187 (188)
3 smart00425 TBOX Domain first f 100.0 1.4E-63 3E-68 446.0 15.9 180 51-255 5-189 (190)
4 PF00907 T-box: T-box; InterP 100.0 3.8E-59 8.2E-64 413.7 9.3 178 51-252 4-184 (184)
5 KOG3585|consensus 100.0 3.9E-58 8.4E-63 440.7 16.6 186 41-256 24-213 (328)
6 PF15178 TOM_sub5: Mitochondri 8.6 1.7E+02 0.0036 21.1 0.7 14 87-100 2-15 (51)
7 COG0634 Hpt Hypoxanthine-guani 6.5 2.9E+02 0.0062 25.1 1.4 16 221-236 62-77 (178)
8 cd02859 AMPKbeta_GBD_like AMP- 6.2 6.8E+02 0.015 18.8 3.3 18 120-137 43-61 (79)
9 KOG0122|consensus 6.0 3.1E+02 0.0068 26.3 1.5 49 155-204 177-225 (270)
10 PF00041 fn3: Fibronectin type 5.9 4.2E+02 0.0091 18.6 1.9 15 87-105 58-72 (85)
No 1
>KOG3586|consensus
Probab=100.00 E-value=8.8e-69 Score=512.66 Aligned_cols=188 Identities=56% Similarity=0.879 Sum_probs=175.0
Q ss_pred ccchhhhhccCCCc-eEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeeeEEEecCcceeE
Q psy434 51 PATRFAWSGFYPQR-IMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLL 127 (307)
Q Consensus 51 ~~~~~~W~~f~~~~-EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~~erVD~kryRy 127 (307)
||..++|++||+++ ||||| ||+|||.+. -.|+|||| ++.|+++ +++++||+|||||
T Consensus 84 Le~keLWdrFh~lGTEMIITKsGRRMFPTvr--------V~~~GldP----~a~Y~vl---------mDvVPvD~KRYRY 142 (437)
T KOG3586|consen 84 LETKELWDRFHDLGTEMIITKSGRRMFPTVR--------VKFSGLDP----MADYYVL---------MDVVPVDSKRYRY 142 (437)
T ss_pred eehHHHHHHHHhcCceEEEecccccccceEE--------EEEecCCc----ccceEEE---------EeEEecccceeee
Confidence 99999999999976 99999 999999998 48999955 9999998 5688999999999
Q ss_pred eeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceEEEEEcCCCCCC
Q psy434 128 FLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNS 207 (307)
Q Consensus 128 kf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL~I~e~~~~~~~ 207 (307)
.|+..+|+++||+|+..++|+|+|||+|++|+.||++.|||||+|||||.+|++|||+||||||||||+||++.+.....
T Consensus 143 ayH~S~WlvAGkADp~~p~R~yvHPDSP~sGe~wmkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~~~~~s 222 (437)
T KOG3586|consen 143 AYHSSSWLVAGKADPAPPPRVYVHPDSPASGEQWMKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLDPGNDS 222 (437)
T ss_pred eecccceeeecCCCCCCCCceeeCCCCCCCHHHHHHhhhchheeeccccccccCCcEeeecccccCCceEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999866422
Q ss_pred C---CCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCCCCCCCchh
Q psy434 208 A---SATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDDCSA 259 (307)
Q Consensus 208 ~---~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~~~~~~~~~ 259 (307)
. ...+.++||+|+||+|+|||||||++||+|||+.|||||||||+++.+|+.
T Consensus 223 ~~~~~~~e~~kTF~FpET~FtAVTAYQNq~ITkLKI~sNPFAKGFRD~~~~~~~~ 277 (437)
T KOG3586|consen 223 NKYVEKNEGFKTFVFPETVFTAVTAYQNQRITKLKIESNPFAKGFRDCGRNDWPD 277 (437)
T ss_pred cccccccccceeEeccceeEEEEeecccceeeeeeeccCccccccccCCccCccc
Confidence 2 344678999999999999999999999999999999999999999988643
No 2
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=100.00 E-value=2e-66 Score=463.32 Aligned_cols=179 Identities=51% Similarity=0.768 Sum_probs=163.8
Q ss_pred ccchhhhhccCC-CceEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeeeEEEecCcceeE
Q psy434 51 PATRFAWSGFYP-QRIMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLL 127 (307)
Q Consensus 51 ~~~~~~W~~f~~-~~EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~~erVD~kryRy 127 (307)
|+++++|++||+ ++||||| ||+|||.|+ | .|+||+| ++.|.++ |+|+++|++||||
T Consensus 6 L~~~~lW~~f~~~~tEMIITk~GRrmFP~l~-~-------~vsGLdp----~~~Y~v~---------l~~~~~D~~Rykf 64 (188)
T cd00182 6 LENRELWKKFHELGTEMIITKSGRRMFPTLK-V-------KVSGLDP----NALYSVL---------MDLVPVDDHRYKF 64 (188)
T ss_pred EcCHHHHHhhcccCcEEEEecCCcccccceE-E-------EEeCCCc----ccceEEE---------EEEEEcCCcEEEe
Confidence 346799999999 5699999 999999999 5 9999955 9999998 6789999987775
Q ss_pred eeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceEEEEEcCCCCCC
Q psy434 128 FLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNS 207 (307)
Q Consensus 128 kf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL~I~e~~~~~~~ 207 (307)
++|+|+++|++|+..+.++|+|||||++|++||+++|+|++|||||+..++.++|+|+|||||||||||+++++....
T Consensus 65 --~~~~W~~~g~~e~~~~~~~~~HPdsp~tG~~wM~~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~~~ 142 (188)
T cd00182 65 --SGGKWVVAGKAEPHLPPRVYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSSPF 142 (188)
T ss_pred --cCCcEeEcCCCCCCCCCceEECCCCCcCHHHHhhCccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCccc
Confidence 679999999999999999999999999999999999999999999999888999999999999999999999875422
Q ss_pred CCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCCCCC
Q psy434 208 ASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEP 254 (307)
Q Consensus 208 ~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~~~~ 254 (307)
....+++|+||||+|||||+|||++|++|||++|||||||||.+.
T Consensus 143 --~~~~~~~f~F~eT~FiAVTaYqN~~It~lKi~~NpfAkgfr~~~~ 187 (188)
T cd00182 143 --SWRLVQTFSFPETEFIAVTAYQNQEITQLKIDNNPFAKGFRDNGR 187 (188)
T ss_pred --cccccEEEECCCeEEEEEEeecCHhHhhhhhcCCcccccccccCC
Confidence 235789999999999999999999999999999999999999864
No 3
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=100.00 E-value=1.4e-63 Score=446.01 Aligned_cols=180 Identities=51% Similarity=0.784 Sum_probs=163.5
Q ss_pred ccchhhhhccCCC-ceEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeeeEEEecCcceeE
Q psy434 51 PATRFAWSGFYPQ-RIMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLL 127 (307)
Q Consensus 51 ~~~~~~W~~f~~~-~EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~~erVD~kryRy 127 (307)
|+++++|++||+. +||||| ||+|||.|+ | .|+||+| ++.|.++ |+|+++|++||+
T Consensus 5 L~~~~lW~~f~~~~tEMIVTk~GRrmFP~l~-~-------~vsGLdp----~~~Y~v~---------l~~~~~d~~ryk- 62 (190)
T smart00425 5 LEDKELWRKFHELGTEMIVTKSGRRMFPTLK-Y-------KVSGLDP----NALYSVL---------MDLVPVDDKRYK- 62 (190)
T ss_pred EcCHHHHHhhCccCcEEEEecCCceeCCeeE-E-------EEeCCCc----cCcEEEE---------EEEEEccCcEEE-
Confidence 4567999999997 699999 999999999 4 9999955 9999998 678999997766
Q ss_pred eeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCce--EecCCccccceEEEEEcCCCC
Q psy434 128 FLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHI--ILNSMHKYQPRFHVVLLSPES 205 (307)
Q Consensus 128 kf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I--~L~SmHKY~PvL~I~e~~~~~ 205 (307)
|++|+|+++|++|+..++++|+|||||++|++||+++|+|++|||||+..+++++| +|+|||||+|||||+++++..
T Consensus 63 -f~~~~W~~~g~~e~~~~~~~~~Hpdsp~tG~~wM~~~v~F~kvKlTN~~~~~~~~i~i~L~SmhkY~P~l~I~~~~~~~ 141 (190)
T smart00425 63 -FNNGKWVVAGKAEPHMPSRVYVHPDSPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDIS 141 (190)
T ss_pred -ecCCcEEEcCCCCCCCCCceEECCCCccCHHHHhhCcccccccceeccccccCCcEeeeeccCceEeeEEEEEEeCCcc
Confidence 68999999999999988999999999999999999999999999999999988887 999999999999999998654
Q ss_pred CCCCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCCCCCC
Q psy434 206 NSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPD 255 (307)
Q Consensus 206 ~~~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~~~~~ 255 (307)
.. ....+.+|+|+||+|||||+|||++|++|||++||||||||+.+..
T Consensus 142 ~~--~~~~~~~f~F~eT~FiaVTaYqN~~it~lKi~~NpfAkgfr~~~~~ 189 (190)
T smart00425 142 KE--ILSQFKTFVFPETQFIAVTAYQNQKITKLKIDNNPFAKGFRDQGRR 189 (190)
T ss_pred cc--cccceeEEECCceEEEEEeeecccchhhccccCCCCcCccccccCC
Confidence 32 2345689999999999999999999999999999999999998653
No 4
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=100.00 E-value=3.8e-59 Score=413.66 Aligned_cols=178 Identities=43% Similarity=0.724 Sum_probs=137.3
Q ss_pred ccchhhhhccCCC-ceEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeeeEEEecCcceeE
Q psy434 51 PATRFAWSGFYPQ-RIMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLL 127 (307)
Q Consensus 51 ~~~~~~W~~f~~~-~EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~~erVD~kryRy 127 (307)
|+++++|++||+. +||||| ||+|||.|+ | .|+||+| ++.|+++ |+|+++|+++|+
T Consensus 4 L~~~~lW~~f~~~~~EMivt~~GR~~FP~l~-y-------~vsGL~p----~~~Y~i~---------l~~~~~d~~~~k- 61 (184)
T PF00907_consen 4 LENEELWKKFHELGNEMIVTKNGRRMFPTLE-Y-------SVSGLDP----DSLYSIS---------LHFERVDNKRYK- 61 (184)
T ss_dssp ETTHHHHHHHHHH--EEE-BTT-EE-SS-EE-E-------EEESS-T----TSEEEEE---------EEEEESCSEEEE-
T ss_pred CccHHHHHHhccCCCEEEEeecccccccccE-E-------EecCCCC----CcceEEE---------EEEEEecCceee-
Confidence 5578999999995 699999 999999999 5 9999955 9999998 779999997766
Q ss_pred eeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceEEEEEcCCCCCC
Q psy434 128 FLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNS 207 (307)
Q Consensus 128 kf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL~I~e~~~~~~~ 207 (307)
|.+|+|.+++++++..+.++++||+|+++|++||+++|+|++|||||+..++++.|+|+|||||+|||+|+++++....
T Consensus 62 -~~~~~W~~~~~~~~~~~~~~~~h~~~~~~G~~WM~~~v~F~~vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~~~ 140 (184)
T PF00907_consen 62 -FSNGKWVPSGKAEPPMPPRVVIHPDGPQTGSEWMKNGVSFDKVKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNGSP 140 (184)
T ss_dssp -EETTEEEEEEE---B-----EE-TT-SEEHHHHHHS-EEETT-EEESSTT-TST-EE--TTEEEEEEEEEEECTTTSCC
T ss_pred -cccccccccccccccccceEEEEecCcCCHHHhCcccEEeehhhhhCCCCCcccceEEccccEEEEEEEEEEcCCcccc
Confidence 6799999999999888899999999999999999999999999999999887888999999999999999999876432
Q ss_pred CCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCCC
Q psy434 208 ASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFREC 252 (307)
Q Consensus 208 ~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~~ 252 (307)
. ....+.+|+|+||+|||||+|||++|++|||++|||||||||.
T Consensus 141 ~-~~~~~~~f~f~~t~FIaVT~Yqn~~I~~lK~~~Npfak~fr~~ 184 (184)
T PF00907_consen 141 S-PNQPVHEFSFPETEFIAVTAYQNEEIRQLKIDNNPFAKGFRDK 184 (184)
T ss_dssp C-SCSSEEEEE-GGG-EEEESS-SSHHHHHHHHHH-GGGGGGHH-
T ss_pred c-cccceEEeecCcCeEEeecccchhhhhhhhhccCCCccccCCC
Confidence 1 2456899999999999999999999999999999999999973
No 5
>KOG3585|consensus
Probab=100.00 E-value=3.9e-58 Score=440.71 Aligned_cols=186 Identities=44% Similarity=0.699 Sum_probs=167.3
Q ss_pred ccCCCcccCCccchhhhhccCCCc-eEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeeeE
Q psy434 41 VLPLPLHQQIPATRFAWSGFYPQR-IMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQN 117 (307)
Q Consensus 41 ~~~~~lh~~~~~~~~~W~~f~~~~-EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~~ 117 (307)
.+.|.|+ ++++|++||+.+ ||||| ||+|||.|+ | .|+|||| ++.|.|. |++
T Consensus 24 ~~~v~l~-----~~eLW~~fh~~~~EmiitK~GRrmFP~l~-~-------~VsGLdp----~s~Y~i~---------l~~ 77 (328)
T KOG3585|consen 24 QVKVSLE-----NRELWKKFHEHGTEMIVTKRGRRMFPALK-F-------KVSGLDP----NSLYSIL---------LEL 77 (328)
T ss_pred ccEEEEe-----chhHHHhhccCccEEEEecCCceeccccc-e-------eeccCCc----ccceEEE---------EEE
Confidence 3555555 579999999966 89999 999999999 5 9999955 8999998 678
Q ss_pred EEecCcceeEeeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCc-eEecCCccccceE
Q psy434 118 YKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGH-IILNSMHKYQPRF 196 (307)
Q Consensus 118 erVD~kryRykf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~-I~L~SmHKY~PvL 196 (307)
+++|+.|| +|++|+|+++|++++..+.++++||||++||++||+++|+|++|||||++.+++++ |+|+|||||+|||
T Consensus 78 ~~~D~~ry--kf~ng~W~p~gk~e~~~~~~~~~Hpd~p~TG~~WM~~~V~F~kvKITN~~~~~~~~~i~l~SmHKY~P~l 155 (328)
T KOG3585|consen 78 VPIDDKRY--KFNNGKWVPSGKAEPHVPSKVYVHPDGPATGAHWMSEPVSFDKVKITNNKSDKKGKVIILNSMHKYQPVL 155 (328)
T ss_pred EEccCcee--eecCCeeccCCCCCCCCCceEEEecCCccchHHHhcCCcccceeEeeccccccCCceEeeecccceeeeE
Confidence 99999765 57899999999999988999999999999999999999999999999999999888 9999999999999
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCCCCCCC
Q psy434 197 HVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDD 256 (307)
Q Consensus 197 ~I~e~~~~~~~~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~~~~~~ 256 (307)
||++++... ......+++|+|+||+|||||+|||++|++|||++||||||||+.+..+
T Consensus 156 ~i~~~~~~~--~~~~~~~~~~~F~eT~FIaVTaYQn~~it~lKi~~Npfakgfr~~~~~~ 213 (328)
T KOG3585|consen 156 HIVELDASL--ISPEISVQSFKFPETQFIAVTAYQNQEITKLKIDNNPFAKGFRDNIEGR 213 (328)
T ss_pred EEEEccccc--CCCccceeEEEcccceeEEeeeeecceehhhcccCCccccccccccccc
Confidence 999997322 2235678999999999999999999999999999999999999988764
No 6
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=8.58 E-value=1.7e+02 Score=21.11 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=10.6
Q ss_pred eecCCCCCCCCCCc
Q psy434 87 FWGGGLSKPCDVHT 100 (307)
Q Consensus 87 F~i~GL~p~~d~~~ 100 (307)
|++.||.|+.||..
T Consensus 2 ~~~egl~pk~DPeE 15 (51)
T PF15178_consen 2 FRIEGLGPKMDPEE 15 (51)
T ss_pred cccccCCCCCCHHH
Confidence 68899988776654
No 7
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=6.47 E-value=2.9e+02 Score=25.09 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.2
Q ss_pred ceEEEEeccccchhhh
Q psy434 221 ETMFTAVTAYQNHRIT 236 (307)
Q Consensus 221 eTeFIAVTaYQN~~It 236 (307)
+.+|++|++|.|....
T Consensus 62 e~dFm~vSSYg~~t~s 77 (178)
T COG0634 62 EVDFMHVSSYGGGTSS 77 (178)
T ss_pred eeEEEEEeccCCCccc
Confidence 6799999999886544
No 8
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=6.25 E-value=6.8e+02 Score=18.82 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=12.5
Q ss_pred ecCcceeEee-eCCceEEc
Q psy434 120 LPDIYFLLFL-FSSSWVVA 137 (307)
Q Consensus 120 VD~kryRykf-~~gkW~~s 137 (307)
+....|.|+| .+|+|...
T Consensus 43 L~~g~y~YkF~Vdg~w~~d 61 (79)
T cd02859 43 LPPGKYQYKFIVDGEWRHS 61 (79)
T ss_pred cCCCCEEEEEEECCEEEeC
Confidence 3345677777 48899875
No 9
>KOG0122|consensus
Probab=6.04 E-value=3.1e+02 Score=26.30 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=34.5
Q ss_pred CCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceEEEEEcCCC
Q psy434 155 PASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPE 204 (307)
Q Consensus 155 p~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL~I~e~~~~ 204 (307)
.+.| .||+..=+=.-|||||=..+....=+-...|++-|+..||-.-+.
T Consensus 177 ~~~g-~~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK 225 (270)
T KOG0122|consen 177 RASG-SDMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK 225 (270)
T ss_pred cccc-cccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEcc
Confidence 5667 889887777789999966554332225567888888888776543
No 10
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=5.93 E-value=4.2e+02 Score=18.62 Aligned_cols=15 Identities=20% Similarity=0.084 Sum_probs=12.2
Q ss_pred eecCCCCCCCCCCceEEEe
Q psy434 87 FWGGGLSKPCDVHTKLYCT 105 (307)
Q Consensus 87 F~i~GL~p~~d~~~~Y~~~ 105 (307)
+.|.||.| ...|.+.
T Consensus 58 ~~i~~L~p----~t~Y~~~ 72 (85)
T PF00041_consen 58 YTITGLQP----GTTYEFR 72 (85)
T ss_dssp EEEESCCT----TSEEEEE
T ss_pred eeeccCCC----CCEEEEE
Confidence 59999965 8888876
Done!