Query psy434
Match_columns 307
No_of_seqs 175 out of 443
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:04:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a04_A T-box transcription fac 100.0 1.4E-68 4.7E-73 481.5 10.7 186 40-251 14-203 (203)
2 2x6u_A T-box transcription fac 100.0 2.2E-68 7.6E-73 480.0 12.0 190 40-257 4-196 (203)
3 1h6f_A T-box transcription fac 100.0 4.4E-68 1.5E-72 474.8 10.0 189 38-256 1-192 (193)
4 1xbr_A Protein (T protein); co 100.0 6E-67 2.1E-71 464.4 8.7 173 51-253 6-181 (184)
5 1oww_A FN, fibronectin first t 18.6 71 0.0024 25.1 2.6 38 52-105 37-77 (98)
6 2jmf_B Neurogenic locus notch 15.1 59 0.002 19.1 1.0 9 16-24 2-10 (26)
7 4dny_A Metalloprotease STCE; m 8.4 2E+02 0.0067 23.5 2.4 20 122-141 105-124 (126)
8 1q38_A Fibronectin; amyloid fi 7.1 2.5E+02 0.0086 21.5 2.4 19 77-106 37-55 (89)
9 1lwu_A Fibrinogen alpha-1 chai 6.0 1.5E+02 0.005 24.0 0.6 17 22-38 73-89 (119)
10 1fzc_A Fibrin; blood coagulati 5.3 2.5E+02 0.0087 21.4 1.4 18 21-38 50-67 (87)
No 1
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.4e-68 Score=481.46 Aligned_cols=186 Identities=56% Similarity=0.846 Sum_probs=166.7
Q ss_pred CccCCCcccCCccchhhhhccCCC-ceEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeee
Q psy434 40 SVLPLPLHQQIPATRFAWSGFYPQ-RIMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQ 116 (307)
Q Consensus 40 ~~~~~~lh~~~~~~~~~W~~f~~~-~EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~ 116 (307)
+.|.|.| +++++|++||+. +||||| ||+|||.|+ | +|+|||| +++|.++ |+
T Consensus 14 ~~i~V~L-----e~~~LW~~Fh~~~tEMIITK~GRrmFP~l~-~-------~vsGLdp----~~~Y~~~---------l~ 67 (203)
T 4a04_A 14 GGVSVQL-----EMKALWDEFNQLGTEMIVTKAGRRMFPTFQ-V-------KLFGMDP----MADYMLL---------MD 67 (203)
T ss_dssp -CCEEEE-----TTHHHHHHHHHHCCEEECCSSCEECSSCEE-E-------EEESCCT----TSEEEEE---------EE
T ss_pred CCcEEEe-----CCHHHHHhhCcCCCeEEEEeCCcccCCceE-E-------EEeCCCc----ccCcEEE---------EE
Confidence 3455555 467999999995 699999 999999999 5 9999955 9999998 67
Q ss_pred EEEecCcceeEeeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceE
Q psy434 117 NYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRF 196 (307)
Q Consensus 117 ~erVD~kryRykf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL 196 (307)
|+++|++||||+|++|+|+++|++|+..++|+++|||||++|++||+++|+|++||||||..+++++|+|+|||||||||
T Consensus 68 ~~~~D~~ryry~~~~~~W~~~gkae~~~p~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrl 147 (203)
T 4a04_A 68 FVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRF 147 (203)
T ss_dssp EEESCSEEEEEETTTTEEEEEEECCCCCCCCCCBCTTCSEEHHHHHHSCEEECSCEEECCTTCCSSCEECCTTCEEEEEE
T ss_pred EEEccCCeEEecccCCCEeECCccCCCCCCceEEcCCCCcCHHHHhhCcceeeeeecccCccCcCCEEEEeeccccccEE
Confidence 89999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCC-CCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCC
Q psy434 197 HVVLLSPESNS-ASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRE 251 (307)
Q Consensus 197 ~I~e~~~~~~~-~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~ 251 (307)
||+++++.+.. ....+.+++|+|+||+|||||+|||++||+|||++|||||||||
T Consensus 148 hIv~~~~~~~~~~~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NPFAkgFrd 203 (203)
T 4a04_A 148 HVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRD 203 (203)
T ss_dssp EEEECCCC--------CCEEEEECGGGCEEEESSCCCHHHHHHHHHHCGGGGGGCC
T ss_pred EEEEcCCCcccccccCCceEEEECCCcEEEeeCccCCHHHHHHHhccCCCCcccCC
Confidence 99999865422 12346789999999999999999999999999999999999997
No 2
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=100.00 E-value=2.2e-68 Score=480.00 Aligned_cols=190 Identities=47% Similarity=0.721 Sum_probs=156.3
Q ss_pred CccCCCcccCCccchhhhhccCC-CceEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeee
Q psy434 40 SVLPLPLHQQIPATRFAWSGFYP-QRIMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQ 116 (307)
Q Consensus 40 ~~~~~~lh~~~~~~~~~W~~f~~-~~EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~ 116 (307)
++|+|.|. ++++|++||+ .+||||| ||+|||.|+ | .|+||+| +++|.++ |+
T Consensus 4 ~~i~V~L~-----~~~LW~~F~~~~tEMIiTk~GRrmFP~l~-~-------~vsGLdp----~~~Y~v~---------l~ 57 (203)
T 2x6u_A 4 EGIKVFLH-----ERELWLKFHEVGTEMIITKAGRRMFPSYK-V-------KVTGLNP----KTKYILL---------MD 57 (203)
T ss_dssp CCCEEEET-----THHHHHHHHHHCCEEECBSSCEECSSCCE-E-------EEESCCS----SSEEEEE---------EE
T ss_pred CCCEEEEC-----CHHHHHhcCcCCceEEEecCCcccCceeE-E-------EEeCCCc----ccCeEEE---------EE
Confidence 45777766 5699999999 6699999 999999999 5 9999955 9999998 67
Q ss_pred EEEecCcceeEeeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceE
Q psy434 117 NYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRF 196 (307)
Q Consensus 117 ~erVD~kryRykf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL 196 (307)
|+++|++||| |++|+|+++|++|+..+.|+|+|||||++|++||+++|+|++||||||..++.++|+|+|||||||||
T Consensus 58 ~~~~D~~ryk--f~~~~W~~~gkae~~~p~r~y~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrl 135 (203)
T 2x6u_A 58 IVPADDHRYK--FADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRL 135 (203)
T ss_dssp EEEEEEEEEE--EETTEEEEEEECCCC---CCEECTTCSEEHHHHHHSCEECTTCEEECCTTCSSCCEECCTTEEEEEEE
T ss_pred EEEccCceeE--EeCCcEeECcccCCCCCcceEECCCCccchHHHhhCCceeeeeeceeccCCccceEeecCCceEEEEE
Confidence 8999997766 68999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCCCCCCCc
Q psy434 197 HVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDDC 257 (307)
Q Consensus 197 ~I~e~~~~~~~~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~~~~~~~ 257 (307)
||+++++..........+++|+||||+|||||||||++||+|||++|||||||||++..++
T Consensus 136 hIv~~~~~~~~~~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NPFAkgFR~~~~~~~ 196 (203)
T 2x6u_A 136 HIVKADENNGFGSKNTAFCTHVFPETAFIAVTSYQNHKITQLKIENNPFAKGFRGSDDMEL 196 (203)
T ss_dssp EEEECCTTSCSSSSCCCEEEECCGGGCEEEESSCCSHHHHHHHHHHC--------------
T ss_pred EEEEeCCccccCcCccceEEEEcCCcEEEEEeeecchhhhhhhhccCCCccccccCccchh
Confidence 9999976543222345789999999999999999999999999999999999999987665
No 3
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=100.00 E-value=4.4e-68 Score=474.85 Aligned_cols=189 Identities=46% Similarity=0.714 Sum_probs=164.6
Q ss_pred CCCccCCCcccCCccchhhhhccCC-CceEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeee
Q psy434 38 SSSVLPLPLHQQIPATRFAWSGFYP-QRIMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYK 114 (307)
Q Consensus 38 ~~~~~~~~lh~~~~~~~~~W~~f~~-~~EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~ 114 (307)
|+..|+|.|. ++++|++||+ .+||||| ||+|||.|+ | .|+||+| ++.|.++
T Consensus 1 m~~~i~V~L~-----~~~LW~~F~~~~tEMIiTk~GRrmFP~l~-~-------~v~GLdp----~~~Y~v~--------- 54 (193)
T 1h6f_A 1 MKDDPKVHLE-----AKELWDQFHKRGTEMVITKSGRRMFPPFK-V-------RCSGLDK----KAKYILL--------- 54 (193)
T ss_dssp ---CCEEEET-----THHHHHHHHHHCCEEECCTTCBCCSSCCE-E-------EEESCCS----SSEEEEE---------
T ss_pred CCCCCEEEEC-----CHHHHHhhCcccceEEEecCCcccCceeE-E-------EEeCCCc----ccceEEE---------
Confidence 3455666666 5799999999 5699999 999999999 5 9999955 9999998
Q ss_pred eeEEEecCcceeEeeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccc
Q psy434 115 LQNYKLPDIYFLLFLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQP 194 (307)
Q Consensus 115 l~~erVD~kryRykf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~P 194 (307)
|+|+++|++||+ |++|+|+++|++|+..+.|+|+|||||++|++||+++|+|++||||||..+++++|+|+|||||||
T Consensus 55 l~~~~~d~~ryk--f~~~~W~~~gkae~~~p~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~~~~~~i~L~SmHKY~P 132 (193)
T 1h6f_A 55 MDIIAADDCRYK--FHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQP 132 (193)
T ss_dssp EEEEEEEEEEEE--EETTEEEEEEECCCCCCCCCEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEE
T ss_pred EEEEEccCceee--ccCCcEEECcccCCCCCcceEecCCCcccHHHHhhCCcceeeeeeeccCCCCCCcEEecCCceEee
Confidence 678999997655 789999999999999999999999999999999999999999999999999899999999999999
Q ss_pred eEEEEEcCCCCCCCCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCCCCCCC
Q psy434 195 RFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECEPDD 256 (307)
Q Consensus 195 vL~I~e~~~~~~~~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~~~~~~ 256 (307)
||||+++++... ...+.+++|+||||+|||||+|||++||+|||++|||||||||++..+
T Consensus 133 rlhI~~~~~~~~--~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NpFAkgFr~~~~~~ 192 (193)
T 1h6f_A 133 RFHIVRANDILK--LPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNGR 192 (193)
T ss_dssp EEEEECCSCGGG--GGGSCCEEEECGGGCEEEESSCSCHHHHHHHHHHCGGGGGGCC-----
T ss_pred EEEEEEcCCccC--CCCcceEEEECCCeEEEEEeccCchhhhhhhhcCCCCCcccccCCCCC
Confidence 999999875432 223568999999999999999999999999999999999999987643
No 4
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=100.00 E-value=6e-67 Score=464.36 Aligned_cols=173 Identities=40% Similarity=0.633 Sum_probs=158.9
Q ss_pred ccchhhhhccCCC-ceEEEc--CceeccccccccccccceecCCCCCCCCCCceEEEeeceeeeeeeeeEEEecCcceeE
Q psy434 51 PATRFAWSGFYPQ-RIMFVL--GMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCTNKIVQINYKLQNYKLPDIYFLL 127 (307)
Q Consensus 51 ~~~~~~W~~f~~~-~EMiVt--Gr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~~~~~~~~~l~~erVD~kryRy 127 (307)
|+++++|++||+. +||||| ||+|||.|+ | .|+||+| +++|.++ |+|+++|++|||
T Consensus 6 L~~~~LW~~F~~~~tEMIiTk~GRrmFP~l~-~-------~v~GLdp----~~~Y~v~---------l~~~~~D~~ryk- 63 (184)
T 1xbr_A 6 LEERDLWTRFKELTNEMIVTKNGRRMFPVLK-V-------SMSGLDP----NAMYTVL---------LDFVAADNHRWK- 63 (184)
T ss_dssp ETTHHHHHHHHHHCCEEECBTTCEECSSCCE-E-------EEECSCT----TSEEEEE---------EEEEESSSCEEE-
T ss_pred EcCHHHHHhhcccCcEEEEecCCcccCCccE-E-------EEeCCCc----ccCeEEE---------EEEEEccCceEE-
Confidence 4467999999995 699999 999999999 5 9999955 9999998 678999998776
Q ss_pred eeeCCceEEcccCCCCCCCCeEEcCCCCCchhhhhcCcccceeeccccCCCCCCCceEecCCccccceEEEEEcCCCCCC
Q psy434 128 FLFSSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMHKYQPRFHVVLLSPESNS 207 (307)
Q Consensus 128 kf~~gkW~~sgkae~~~~~rv~~Hpdgp~tGs~WMk~~VsF~kvKITNn~~~~~~~I~L~SmHKY~PvL~I~e~~~~~~~ 207 (307)
|++|+|+++|++|+..+.|+|+|||||++|++||+++|+|++||||||. ++.++|+|+|||||+|||||+++++.
T Consensus 64 -~~~~~W~~~gkae~~~p~r~~~Hpdsp~~G~~WM~~~VsF~klKlTNn~-~~~~~i~L~SmHKY~PrlhI~~~~~~--- 138 (184)
T 1xbr_A 64 -YVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKM-NGGGQIMLNSLHKYEPRIHIVRVGGT--- 138 (184)
T ss_dssp -EETTEEEEESSCCCCCCCCCEECTTCSEEHHHHHHSCEECTTCEEESSC-CTTTCEECCSSSEEEEEEEEEEESSS---
T ss_pred -EECCcEEEcCccCCCCCcceEECCCCchhHHHHhhCCceeccccccccC-CCCCeEEeccCceEEEEEEEEEeCCC---
Confidence 5899999999999999999999999999999999999999999999995 55789999999999999999998753
Q ss_pred CCCCCCcEEEEecceEEEEeccccchhhhhhhhccCCCCCCCCCCC
Q psy434 208 ASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFRECE 253 (307)
Q Consensus 208 ~~~~~~~~tF~F~eTeFIAVTaYQN~~ItqLKi~~NPFAKGFR~~~ 253 (307)
...+++|+||||+|||||+|||++||+|||++|||||||||++
T Consensus 139 ---~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NpFAkgFr~~~ 181 (184)
T 1xbr_A 139 ---QRMITSHSFPETQFIAVTAYQNEEITALKIKHNPFAKAFLDAK 181 (184)
T ss_dssp ---SCCEEEEECGGGCEEEESSCCCHHHHHHHHHHCGGGHHHHHHH
T ss_pred ---cceEEEEECCCcEEEEEeccCChhHhhhhhccCCCCcccCCCc
Confidence 2468999999999999999999999999999999999999863
No 5
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=18.58 E-value=71 Score=25.07 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=24.4
Q ss_pred cchhhhhccCCCc---eEEEcCceeccccccccccccceecCCCCCCCCCCceEEEe
Q psy434 52 ATRFAWSGFYPQR---IMFVLGMGCFLDLSSYSSLYQTFWGGGLSKPCDVHTKLYCT 105 (307)
Q Consensus 52 ~~~~~W~~f~~~~---EMiVtGr~iFP~L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~ 105 (307)
++.-.|+..-..+ |.+|.| +|++| .|+||.| ...|.+-
T Consensus 37 eyiL~~R~k~~~g~Wke~~Ip~-----h~nSY-------tI~GL~P----~~~YE~q 77 (98)
T 1oww_A 37 KYILRWRPKNSVGRWKEATIPG-----HLNSY-------TIKGLKP----GVVYEGQ 77 (98)
T ss_dssp EEEEEEEETTCSSCCEEEEECS-----SCCEE-------EECSCCS----SEEEEEE
T ss_pred EEEEEEEEcCCCCceeEEEecC-----ccceE-------EEecCCC----CcEEEEE
Confidence 3444555433322 555555 78877 9999966 8888885
No 6
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=15.06 E-value=59 Score=19.12 Aligned_cols=9 Identities=67% Similarity=1.383 Sum_probs=7.5
Q ss_pred CCCCCCCCC
Q psy434 16 PLGAPSTGG 24 (307)
Q Consensus 16 ~~~~~~~~~ 24 (307)
|||.|.||.
T Consensus 2 plgspntga 10 (26)
T 2jmf_B 2 PLGSPNTGA 10 (26)
T ss_pred CCCCCCCCC
Confidence 888888885
No 7
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=8.37 E-value=2e+02 Score=23.50 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=15.6
Q ss_pred CcceeEeeeCCceEEcccCC
Q psy434 122 DIYFLLFLFSSSWVVAGKAD 141 (307)
Q Consensus 122 ~kryRykf~~gkW~~sgkae 141 (307)
.+.|.|+|..|+|+..|.-|
T Consensus 105 G~t~~F~y~~g~Wv~~gd~~ 124 (126)
T 4dny_A 105 GNTLLFKYVNGQWFRSGELE 124 (126)
T ss_dssp TCEEEEEEETTEEEETTCC-
T ss_pred CCEEEEEEcCCEEEEccccc
Confidence 45688888999999988654
No 8
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=7.14 E-value=2.5e+02 Score=21.46 Aligned_cols=19 Identities=26% Similarity=0.092 Sum_probs=14.9
Q ss_pred cccccccccceecCCCCCCCCCCceEEEee
Q psy434 77 LSSYSSLYQTFWGGGLSKPCDVHTKLYCTN 106 (307)
Q Consensus 77 L~~Y~~~~~~F~i~GL~p~~d~~~~Y~~~~ 106 (307)
+++| .|+||.| ...|.+.+
T Consensus 37 ~nSY-------tIsGLkP----GvtYegQL 55 (89)
T 1q38_A 37 LNSY-------TIKGLKP----GVVYEGQL 55 (89)
T ss_dssp SSCC-------CCCCCCT----TCCEEEEE
T ss_pred cceE-------EEeccCC----CcEEEEEE
Confidence 5668 9999966 78887764
No 9
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=6.04 E-value=1.5e+02 Score=24.02 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.0
Q ss_pred CCCCccCCcceecccCC
Q psy434 22 TGGSCSSNLSLSTDHSS 38 (307)
Q Consensus 22 ~~~~~~~~~~~~~~~~~ 38 (307)
--|||+..+.+..|+.+
T Consensus 73 CKGSCar~~~~~vD~~~ 89 (119)
T 1lwu_A 73 CKGSCARYLEYRLDKEK 89 (119)
T ss_dssp GGGTBSSCCCCCCCCCH
T ss_pred ccchHHHHHHHHhcHHh
Confidence 35999999999888765
No 10
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=5.25 E-value=2.5e+02 Score=21.39 Aligned_cols=18 Identities=39% Similarity=0.542 Sum_probs=14.3
Q ss_pred CCCCCccCCcceecccCC
Q psy434 21 STGGSCSSNLSLSTDHSS 38 (307)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~ 38 (307)
|--|||+.++.+..|+.+
T Consensus 50 sCKGSCar~~~~~vd~~~ 67 (87)
T 1fzc_A 50 SCRGSCSRALAREVDLKD 67 (87)
T ss_dssp TTTTTBSCCCCCCCCTHH
T ss_pred hccchHHHHHHHHhcHHh
Confidence 456999999999887643
Done!