RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy434
         (307 letters)



>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score =  182 bits (463), Expect = 5e-58
 Identities = 76/121 (62%), Positives = 92/121 (76%), Gaps = 2/121 (1%)

Query: 131 SSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMH 190
           +S W+VAGKADP  P R+++HPDSPA+G QW  +VV+F KLKLTNN  D +G  ILNSMH
Sbjct: 66  NSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMH 125

Query: 191 KYQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFR 250
           KYQPRFH+V  +         S F+T+LFPET F AVTAYQN +ITQLKI +NPFAKGFR
Sbjct: 126 KYQPRFHIVRANDILKLPY--STFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFAKGFR 183

Query: 251 E 251
           +
Sbjct: 184 D 184


>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score =  176 bits (449), Expect = 8e-56
 Identities = 58/121 (47%), Positives = 74/121 (61%), Gaps = 7/121 (5%)

Query: 131 SSSWVVAGKADPISPPRIHVHPDSPASGAQWSKQVVSFDKLKLTNNQLDDNGHIILNSMH 190
           +  WV  GK +P +P  +++HPDSP  GA W K  VSF K+KLTN  ++  G I+LNS+H
Sbjct: 66  NGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNK-MNGGGQIMLNSLH 124

Query: 191 KYQPRFHVVLLSPESNSASATSPFKTFLFPETMFTAVTAYQNHRITQLKIASNPFAKGFR 250
           KY+PR H+V +              +  FPET F AVTAYQN  IT LKI  NPFAK F 
Sbjct: 125 KYEPRIHIVRVGGTQ------RMITSHSFPETQFIAVTAYQNEEITALKIKHNPFAKAFL 178

Query: 251 E 251
           +
Sbjct: 179 D 179


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,097,942
Number of extensions: 47906
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 4
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)