Query psy4340
Match_columns 218
No_of_seqs 146 out of 994
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 23:06:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4340.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4340hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 10.8 27 0.002 17.2 0.1 15 133-147 6-20 (26)
2 d2vqca1 a.4.5.78 (A:4-73) F-11 10.8 31 0.0022 20.7 0.4 27 27-57 22-48 (70)
3 d2v9va1 a.4.5.35 (A:377-437) C 10.7 75 0.0055 18.2 2.1 20 30-53 5-24 (61)
4 d3cx5i1 f.23.14.1 (I:4-58) Sub 10.6 94 0.0069 18.1 2.6 23 2-25 1-23 (55)
5 d1g2ha_ a.4.1.12 (A:) Transcri 10.5 63 0.0046 18.9 1.8 21 182-202 13-33 (61)
6 d1e3ha6 d.101.1.1 (A:483-578) 9.9 71 0.0052 20.9 2.0 19 190-208 60-78 (96)
7 d1xrda1 f.3.1.1 (A:1-52) Light 9.5 91 0.0067 18.0 2.2 29 46-74 7-42 (52)
8 d1ppjw_ f.23.14.1 (W:) Subunit 8.5 1.4E+02 0.01 17.7 3.0 23 2-25 7-29 (62)
9 d3ct6a1 c.54.1.2 (A:1-123) PTS 8.1 1.5E+02 0.011 19.7 3.4 33 94-126 87-119 (123)
10 d1biaa1 a.4.5.1 (A:1-63) Bioti 8.0 1.4E+02 0.01 17.2 2.8 38 168-211 10-47 (63)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.84 E-value=27 Score=17.19 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=10.0
Q ss_pred hcCccchHHHHHhhh
Q psy4340 133 TDCLLWPPCQFINFT 147 (218)
Q Consensus 133 ~~~~vWpp~q~inF~ 147 (218)
+-|.||.++-.+.|+
T Consensus 6 aiw~fw~ffalli~y 20 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYY 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346777777776664
No 2
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=10.77 E-value=31 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhcccCCCCccHHHHHHHHH
Q psy4340 27 CLGDTIQQTIELYTKADKTGYDLKRVAHMGI 57 (218)
Q Consensus 27 ~~gD~iaQ~~~~~~~~~~~~~D~~Rt~rf~~ 57 (218)
.+-|++||.-... +..++..|++++..
T Consensus 22 ~ledilaqfeis~----~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISV----PSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCH----HHHHHHHHHHHHHH
T ss_pred cHHHHHHHheecc----chHhHHHHHHHHHH
Confidence 3578999974432 34678888888754
No 3
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=10.73 E-value=75 Score=18.19 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=14.7
Q ss_pred HHHHHhhhhhcccCCCCccHHHHH
Q psy4340 30 DTIQQTIELYTKADKTGYDLKRVA 53 (218)
Q Consensus 30 D~iaQ~~~~~~~~~~~~~D~~Rt~ 53 (218)
.+++|.+.+ .++.+||...+
T Consensus 5 kilaqiiqe----hregldwqeaa 24 (61)
T d2v9va1 5 KILAQIIQE----HREGLDWQEAA 24 (61)
T ss_dssp HHHHHHHHH----CSSCEEHHHHH
T ss_pred HHHHHHHHH----HHccCcHHHHH
Confidence 478999987 45788886554
No 4
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.61 E-value=94 Score=18.11 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=14.1
Q ss_pred hHHHHHHhhhhchhHHHHHHHHHH
Q psy4340 2 TQILRTIFSQKYLFYTNTLGGGVL 25 (218)
Q Consensus 2 ~~~Y~~~l~~~~Pl~tk~~ts~~l 25 (218)
+.+|+.+++ |...-.-++.+|.+
T Consensus 1 stiY~~lfr-RnSv~~~tI~~gAf 23 (55)
T d3cx5i1 1 SSLYKTFFK-RNAVFVGTIFAGAF 23 (55)
T ss_dssp HHHHHHHHT-TSCCCHHHHHHHHH
T ss_pred ChHHHHHHH-hhhHHHHHHHHHHH
Confidence 357998888 66654444444433
No 5
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=10.50 E-value=63 Score=18.89 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=16.6
Q ss_pred ccchhhhhhhhhhHHHHHHHH
Q psy4340 182 RGEEIVHHVEKDKIEESLANA 202 (218)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ 202 (218)
.=.|.+++.|++.|+.++.+.
T Consensus 13 ~L~e~~~~~Er~~I~~aL~~~ 33 (61)
T d1g2ha_ 13 TLDEIIGFYEAQVLKLFYAEY 33 (61)
T ss_dssp CSSSSCSHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHC
Confidence 346778899999999888764
No 6
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]}
Probab=9.92 E-value=71 Score=20.90 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.1
Q ss_pred hhhhhHHHHHHHHHhhhhh
Q psy4340 190 VEKDKIEESLANAVDKRLE 208 (218)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ 208 (218)
+-.+.+++++.||.+.|+.
T Consensus 60 i~~~il~~Al~qAk~gR~~ 78 (96)
T d1e3ha6 60 IPASVLAAALKQARDARLH 78 (96)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4456788999999998874
No 7
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.53 E-value=91 Score=17.96 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=16.8
Q ss_pred CccHHHHHHHHHHHhh-ccchHHHH------HHHhh
Q psy4340 46 GYDLKRVAHMGITGLF-MGPPQHFF------YKYLD 74 (218)
Q Consensus 46 ~~D~~Rt~rf~~~G~~-~gP~~h~w------y~~Ld 74 (218)
-+|++|++.-....++ .+-..|+- |++||
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWle 42 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 4799998754433333 55555553 55555
No 8
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.54 E-value=1.4e+02 Score=17.70 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=13.7
Q ss_pred hHHHHHHhhhhchhHHHHHHHHHH
Q psy4340 2 TQILRTIFSQKYLFYTNTLGGGVL 25 (218)
Q Consensus 2 ~~~Y~~~l~~~~Pl~tk~~ts~~l 25 (218)
+.+|+.+++ |...-.-++.+|.+
T Consensus 7 ~~lYn~lfr-RnStf~~tI~~gAf 29 (62)
T d1ppjw_ 7 ARLYSLLFR-RTSTFALTIVVGAL 29 (62)
T ss_dssp HHHHHHHTS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hhhHHHHHHHHHHH
Confidence 468998888 55544444444433
No 9
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=8.12 E-value=1.5e+02 Score=19.68 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=27.3
Q ss_pred hhhhhHHHHHHHHHHHHhcCCChHHHHHHHHhh
Q psy4340 94 AIISPVCIIIFLYGIGILEAKPKDEIKEEVRDK 126 (218)
Q Consensus 94 ~v~~P~~~~~f~~~~~~leg~s~~~i~~~lk~~ 126 (218)
++-+|+.-..+-+......|.+++++.+++++-
T Consensus 87 ii~~p~tegal~Aa~~a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 87 IFNVPLIEGAYTASALLEAGATFEAIKEQLEKM 119 (123)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCCHHHHHHHHGGG
T ss_pred EEcCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 355788888888888889999999999998753
No 10
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.95 E-value=1.4e+02 Score=17.19 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHhhhhccCcccCcccchhhhhhhhhhHHHHHHHHHhhhhhcCC
Q psy4340 168 LLSYIKYNDDVFGLRGEEIVHHVEKDKIEESLANAVDKRLESNG 211 (218)
Q Consensus 168 yLS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (218)
.|..+..+.. .+++|++++++-.. .+..+.+. .|+..|
T Consensus 10 iL~~L~~~~~---~s~~eLa~~l~vS~--~ti~r~i~-~L~~~G 47 (63)
T d1biaa1 10 LIALLANGEF---HSGEQLGETLGMSR--AAINKHIQ-TLRDWG 47 (63)
T ss_dssp HHHHHTTSSC---BCHHHHHHHHTSCH--HHHHHHHH-HHHHTT
T ss_pred HHHHHHHCCc---CCHHHHHHHHCcCH--HHHHHHHH-HHHHCC
Confidence 4455554443 48899999998888 55555544 344444
Done!