RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4340
(218 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.008
Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 35/146 (23%)
Query: 71 KYLDKYLPKRSGKSIALKLCLDQAIISPVCIIIFLYGIGI-LEAKPKDEIKEEVRDKFLV 129
+D Y + D I + + + IG L+ E R FL
Sbjct: 448 SIVDHYNIPK-------TFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLFRMVFL- 498
Query: 130 IYTTDCLLWPPCQFINFTYISAQYR--VIYVNLVSFVYDILL------SYIKYNDDVFGL 181
+F ++ + R N + + L YI ND +
Sbjct: 499 ---------------DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 182 RGEEIVHHVEKDKIEESLANAVDKRL 207
I+ + KIEE+L + L
Sbjct: 544 LVNAILDFLP--KIEENLICSKYTDL 567
Score = 34.1 bits (77), Expect = 0.034
Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 23/150 (15%)
Query: 66 QHF---FYKYLDKYLPKRSGKSIALKLCLDQAIISPVCIIIFLYGIGILEAKPKDEIKEE 122
F F D + KSI K +D I+S + L L +K ++ +++
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 123 VRDKFLVIYTTDCLLWPPCQFINFTYISAQYRVIYVNLVSFVYDILLSYIKYNDDVFGLR 182
V + +L N+ ++ + + S + YI+ D ++
Sbjct: 83 VEE----------VLRI-----NYKFLMSPIKTEQ-RQPSMMTR---MYIEQRDRLYNDN 123
Query: 183 GEEIVHHVEKDKIEESLANAVDKRLESNGN 212
++V + + L A+ L N
Sbjct: 124 QVFAKYNVSRLQPYLKLRQAL-LELRPAKN 152
Score = 30.6 bits (68), Expect = 0.42
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 11/113 (9%)
Query: 46 GYDLKRVAHMGITGLFMGPPQHFF-YKYLDKYLPKRSGKSIALKLCLDQAIISPVCIIIF 104
G+ LK + H LF F +++L++ + + + I +
Sbjct: 478 GHHLKNIEHPERMTLF---RMVFLDFRFLEQKI-RHDSTA-----WNASGSILNTLQQLK 528
Query: 105 LYGIGILEAKPKDEIKEEVRDKFLVIYTTDCLLWPPCQFINFTYISAQYRVIY 157
Y I + PK E FL + + + + A+ I+
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA-LMAEDEAIF 580
Score = 27.5 bits (60), Expect = 4.7
Identities = 45/269 (16%), Positives = 75/269 (27%), Gaps = 111/269 (41%)
Query: 5 LRTIFSQKYLFYTNTLGGGVLMCLGDTIQ--QTIE--------LYTKADKTGYDL---KR 51
LR + K Y N L VL +Q + L T K D
Sbjct: 234 LRRLLKSKP--YENCLL--VL----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 52 VAHMGITGLFMG--PPQ--HFFYKYLD---KYLPKRSGKSIALKLCLDQAIISPVCIIIF 104
H+ + M P + KYLD + LP+ L +P + I
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLT-------TNPRRLSI- 332
Query: 105 LYGIGILEAKPKDEIKEEVRDKFLVIYTTDCLLWPPCQFINFTYI--------------- 149
I E +RD + N+ ++
Sbjct: 333 --------------IAESIRD-------------GLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 150 --SAQYRVIYVNLVSF---------VYDILLSYIKYNDDVFGLRGEEIVHH------VEK 192
A+YR ++ L F + ++ + +D +V+ VEK
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV------MVVVNKLHKYSLVEK 419
Query: 193 DKIEE-----SLANAVDKRLESNGNGHKK 216
E S+ + +LE+ H+
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRS 448
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.010
Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 38/140 (27%)
Query: 12 KYLFYTNTLGGGVLMCLGDTIQQTIELYTKADKTGYDLKRVAHM-GITGLFMGPPQHFFY 70
LF+ +G + C ++ D + + M I+ L Q
Sbjct: 301 TVLFF---IG---VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL----TQEQVQ 350
Query: 71 KYLDK---YLPKRSGKSIALKLCLDQAIISPVCIII-----FLYGI-----------GIL 111
Y++K +LP I+L + +++ LYG+ G+
Sbjct: 351 DYVNKTNSHLPAGKQVEISL-------VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 112 EAK-PKDEIKEEVRDKFLVI 130
+++ P E K + ++FL +
Sbjct: 404 QSRIPFSERKLKFSNRFLPV 423
Score = 29.2 bits (65), Expect = 1.2
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 47/131 (35%)
Query: 106 YGIGILEAKPKDEIKEEVRDKFLVIYTTDCLLWPPCQFINFTYISAQYRVIYVNLVSFVY 165
YG IL+ I V + P I+F + I N + ++
Sbjct: 1657 YGFSILD------I---VINN------------PVNLTIHFGGEKGKR--IRENYSAMIF 1693
Query: 166 DILLSYIKYNDDVFGLRGEEIVHHV-EKDKIEESL---AN----------AVDKRLESNG 211
+ ++ + +F E + + + L A + L+S G
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 212 N--------GH 214
GH
Sbjct: 1752 LIPADATFAGH 1762
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A
{Acetobacter aceti}
Length = 456
Score = 28.8 bits (65), Expect = 1.4
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 7/50 (14%)
Query: 42 ADKTGYDLKRVAH-----MGITGLFMGPPQHFFYKYLDKYLPKRSGKSIA 86
A + Y+ VA TG + G P + P S ++
Sbjct: 160 AGVSAYEN--VAQCAGGATSTTGYWNGAPLVDGQAPGNNNGPLVSAAALG 207
>2owy_A Recombination-associated protein RDGC; homologous recombination,
RECA shaped DNA binding proteins, DNA binding protein;
2.50A {Pseudomonas aeruginosa}
Length = 306
Score = 26.4 bits (58), Expect = 8.7
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 114 KPKDEIKEEVRDKFLVIYTTDCLLWPPCQFINFTYISAQYRVIYVNLVS 162
K +D++K+E+ L + F I+ +I V+ S
Sbjct: 102 KERDQLKDEIVQTLLPRA-------FIRRSSTFAAIAPSLGLILVDSAS 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.143 0.430
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,391,677
Number of extensions: 202030
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 13
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.9 bits)