RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4340
         (218 letters)



>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
           {Escherichia coli [TaxId: 562]}
          Length = 433

 Score = 26.4 bits (57), Expect = 3.0
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 12/71 (16%)

Query: 78  PKRSGKSIALKLCLDQAIISPVCIIIFLYGIGILEAKPKDEIKEEV---RDKFLVIYTTD 134
              +GKS+ L+      ++    ++I           P  ++  +    +D  L  Y   
Sbjct: 58  ATGTGKSVLLRELAYTGLLRGDRMVIV---------DPNGDMLSKFGRDKDIILNPYDQR 108

Query: 135 CLLWPPCQFIN 145
              W     I 
Sbjct: 109 TKGWSFFNEIR 119


>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi
           [TaxId: 556]}
          Length = 325

 Score = 25.5 bits (55), Expect = 6.6
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 91  LDQAIISPVCIIIF-LYGIGILEAKPKDEIKEEVRDKFLVIYTTDCL 136
            D AI   V  I++   G G +  +    +++ +    +V+ +T   
Sbjct: 232 YDAAIQHGVKGIVYAGMGAGSVSVRGIAGMRKALEKGVVVMRSTRTG 278


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 835,106
Number of extensions: 39576
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 4
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)