Query psy4341
Match_columns 211
No_of_seqs 154 out of 976
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:07:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944|consensus 100.0 3.5E-41 7.5E-46 283.8 14.7 164 5-169 48-214 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.9 1.1E-25 2.5E-30 156.3 4.9 68 101-168 1-68 (68)
3 PF11998 DUF3493: Protein of u 47.6 90 0.002 21.9 5.9 50 40-89 14-63 (75)
4 TIGR02163 napH_ ferredoxin-typ 33.9 1.9E+02 0.004 24.7 7.0 78 42-119 4-101 (255)
5 PF06667 PspB: Phage shock pro 33.8 1.2E+02 0.0026 21.3 4.8 47 148-201 11-59 (75)
6 cd06007 R3H_DEXH_helicase R3H 32.7 21 0.00045 23.8 0.7 18 191-208 35-52 (59)
7 COG3523 IcmF Type VI protein s 30.4 55 0.0012 34.5 3.6 84 125-208 25-120 (1188)
8 PRK09609 hypothetical protein; 29.4 1.8E+02 0.0038 26.1 6.2 54 14-73 58-111 (312)
9 TIGR01606 holin_BlyA holin, Bl 29.2 49 0.0011 22.3 2.1 28 179-211 35-62 (63)
10 PF02652 Lactate_perm: L-lacta 27.0 4.7E+02 0.01 25.0 9.0 52 113-165 202-253 (522)
11 PF03988 DUF347: Repeat of Unk 26.3 1.9E+02 0.0041 18.7 4.8 45 9-64 5-49 (55)
12 KOG2235|consensus 23.2 30 0.00065 33.8 0.3 33 178-210 406-438 (776)
13 cd02640 R3H_NRF R3H domain of 23.1 36 0.00078 22.7 0.6 18 191-208 36-53 (60)
14 PRK09458 pspB phage shock prot 23.0 2E+02 0.0044 20.2 4.3 55 139-201 5-59 (75)
15 PF04835 Pox_A9: A9 protein co 22.2 2.4E+02 0.0052 18.5 4.6 41 59-99 6-46 (54)
16 cd02577 PSTD1 PSTD1: Pseudouri 21.9 1.7E+02 0.0037 26.1 4.8 29 139-167 228-257 (319)
No 1
>KOG1944|consensus
Probab=100.00 E-value=3.5e-41 Score=283.78 Aligned_cols=164 Identities=34% Similarity=0.684 Sum_probs=156.7
Q ss_pred cchhHHHHHHHHHHH-HHHHHHHhhhhcccccC-CCCccHHHHHHHHHHHh-hcchhHHHHHHHhhhhccCCchHHHHHH
Q psy4341 5 KYLFYTNSLGGGVLM-CLGDTIQQTIELYTKVD-KTGYDLKRVAHMGIIGL-VMGPPQHFFYKYLDKYLPKRSGKSIALK 81 (211)
Q Consensus 5 ~~Plltk~ita~~l~-~~gDiiaQ~~~~~~~~~-~~~~D~~Rt~r~~~~G~-~~gP~~h~wy~~Ld~~~p~~~~~~v~~K 81 (211)
.+|+++++++++.+. .+||+++|.++...+ . .+.+|+.|++||+++|+ +.||..|+||..||+++|.+...++++|
T Consensus 48 ~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~-~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~k 126 (222)
T KOG1944|consen 48 LYPLLTKAITTSLLLAAAGDVISQSLEGRSK-KLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVKK 126 (222)
T ss_pred hhhHHHHHHHHHHHHHHhchhhhhhhhhhcc-cccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHHH
Confidence 588899999988888 999999999998643 2 47899999999999996 5999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCChHHHHHHHHhhhHHHHHhcceechhHHhhhhhccCccchhhHHHHHHHHHHHH
Q psy4341 82 LCFDQAIISPVCIIIFLYGMGILEAKPKDEIKEEIRDKFLVIYTTDCLLWPPCQFVNFTYISPQYRVMYVNLITIVYDIM 161 (211)
Q Consensus 82 vl~Dq~v~aP~~~~~f~~~~~~leG~s~~~i~~~l~~~~~~~l~~~~~vWp~~q~inF~~VP~~~Rvlf~n~v~~~Wn~y 161 (211)
++.||++++|+.+.+||.+|+++||++.+++.+++++++||+++++|++||++|++||+|||+++|+++.|+++++||+|
T Consensus 127 vl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~~ 206 (222)
T KOG1944|consen 127 VLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWNTY 206 (222)
T ss_pred HHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCC
Q psy4341 162 LSYIKYND 169 (211)
Q Consensus 162 LS~~~~~~ 169 (211)
||+++++.
T Consensus 207 Ls~~~~~~ 214 (222)
T KOG1944|consen 207 LSYKNASL 214 (222)
T ss_pred HHHHhhcc
Confidence 99999988
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.92 E-value=1.1e-25 Score=156.31 Aligned_cols=68 Identities=40% Similarity=0.863 Sum_probs=66.4
Q ss_pred HHHhcCCChHHHHHHHHhhhHHHHHhcceechhHHhhhhhccCccchhhHHHHHHHHHHHHHhhhhcC
Q psy4341 101 MGILEAKPKDEIKEEIRDKFLVIYTTDCLLWPPCQFVNFTYISPQYRVMYVNLITIVYDIMLSYIKYN 168 (211)
Q Consensus 101 ~~~leG~s~~~i~~~l~~~~~~~l~~~~~vWp~~q~inF~~VP~~~Rvlf~n~v~~~Wn~yLS~~~~~ 168 (211)
|+++||+|++++.++++++|+++++++|++|||+|++||+|||++||++|.|+|+++||+|||+++|+
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999886
No 3
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=47.64 E-value=90 Score=21.93 Aligned_cols=50 Identities=8% Similarity=-0.026 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHHhhcchhHHHHHHHhhhhccCCchHHHHHHHHHHhhhh
Q psy4341 40 YDLKRVAHMGIIGLVMGPPQHFFYKYLDKYLPKRSGKSIALKLCFDQAII 89 (211)
Q Consensus 40 ~D~~Rt~r~~~~G~~~gP~~h~wy~~Ld~~~p~~~~~~v~~Kvl~Dq~v~ 89 (211)
-.+-|.+|.++|+.+.+--.-.-+-.+-+...+++...++.-+.+|-...
T Consensus 14 ~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a~~~l~~~l~nlaI~igav 63 (75)
T PF11998_consen 14 QAPFRGLRRFFYGAFGASAGIGLFIFLFRLIAGPDLNEALPNLAIQIGAV 63 (75)
T ss_pred HCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHhhhHhHHHHHH
Confidence 34679999999998755445556667777877887777777777776543
No 4
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=33.90 E-value=1.9e+02 Score=24.70 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhh-cchhHHHHH--HHhh--h---hccCCchHHHHHHHHHHhhhhhhHHHHHHH--HHHHHhcCC----
Q psy4341 42 LKRVAHMGIIGLV-MGPPQHFFY--KYLD--K---YLPKRSGKSIALKLCFDQAIISPVCIIIFL--YGMGILEAK---- 107 (211)
Q Consensus 42 ~~Rt~r~~~~G~~-~gP~~h~wy--~~Ld--~---~~p~~~~~~v~~Kvl~Dq~v~aP~~~~~f~--~~~~~leG~---- 107 (211)
+||+...++..++ .||....|. +-|. + .+|......++.-++....+..++++.... ...+++-|+
T Consensus 4 ~r~~~~~~~~~lf~~~~~~~~~~~~G~l~~s~~~~~~~l~dP~~~lq~~~a~~~~~~~~~~~~~iv~~~~~l~~GR~fCg 83 (255)
T TIGR02163 4 LRRLVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNALIGALIIVAFYALFGGRAFCS 83 (255)
T ss_pred HHHHHHHHHHHHHHcchhhcceEEEecchHHHhcCCccCcCHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhccccee
Confidence 6788888888876 889887775 3332 2 245566777777777777777677665544 444677776
Q ss_pred ------ChHHHHHHHHhh
Q psy4341 108 ------PKDEIKEEIRDK 119 (211)
Q Consensus 108 ------s~~~i~~~l~~~ 119 (211)
...|...+++++
T Consensus 84 wiCP~g~~~el~~~l~~k 101 (255)
T TIGR02163 84 WVCPVNLVTDFAAWLRRK 101 (255)
T ss_pred ccCCchHHHHHHHHHHHh
Confidence 245665555443
No 5
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.79 E-value=1.2e+02 Score=21.26 Aligned_cols=47 Identities=21% Similarity=0.478 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHhhhhcCCcccCccchhhhhhhhhhhHHH--HHHHHHhhhhh
Q psy4341 148 VMYVNLITIVYDIMLSYIKYNDDVFGLRGEEIVHHVEKDKIEE--NLANAVDKRLE 201 (211)
Q Consensus 148 vlf~n~v~~~Wn~yLS~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~ 201 (211)
++|.-+|+..|-+ |-|.+.++...+++.+| .++++| ..|+.|..|.+
T Consensus 11 ivf~ifVap~WL~-lHY~sk~~~~~gLs~~d------~~~L~~L~~~a~rm~eRI~ 59 (75)
T PF06667_consen 11 IVFMIFVAPIWLI-LHYRSKWKSSQGLSEED------EQRLQELYEQAERMEERIE 59 (75)
T ss_pred HHHHHHHHHHHHH-HHHHHhcccCCCCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4567778888854 45555555554444433 333333 34566666654
No 6
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=32.70 E-value=21 Score=23.83 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=15.6
Q ss_pred HHHHHHhhhhhcCCCCcc
Q psy4341 191 NLANAVDKRLESNGNGRE 208 (211)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~ 208 (211)
.+|++.+.+++|.|+|.+
T Consensus 35 ~~a~~~gL~s~S~G~g~~ 52 (59)
T cd06007 35 RLCRKLGLKSKSKGKGSN 52 (59)
T ss_pred HHHHHcCCCceeecCCCC
Confidence 568889999999999875
No 7
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.37 E-value=55 Score=34.46 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=51.0
Q ss_pred HhcceechhHHhhhhhcc-CccchhhHHHHHHHHHHHHHhh--hhcCCcccCccchhhhhhhhhh----hH-----HHHH
Q psy4341 125 TTDCLLWPPCQFVNFTYI-SPQYRVMYVNLITIVYDIMLSY--IKYNDDVFGLRGEEIVHHVEKD----KI-----EENL 192 (211)
Q Consensus 125 ~~~~~vWp~~q~inF~~V-P~~~Rvlf~n~v~~~Wn~yLS~--~~~~~~~~~~~~~e~~~~~~~~----~~-----~~~~ 192 (211)
..-|.+||..+.--+.-. |..-|.+...++.++|-+|..+ ..-+........++..++++.+ -+ -..-
T Consensus 25 ~~vw~~gp~~~~g~~~p~~~~~~R~l~i~~~~~v~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e 104 (1188)
T COG3523 25 VAVWFAGPLLEVGDVWPLESLAARLLAIGLIVLVWLLYSTIRLWRARRLSKRLEDEQGRRKAVADEIDAELEELNAQLGE 104 (1188)
T ss_pred HHHHHhhhhhhhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhchhhHHHHhcccccccchHHHHHHHHH
Confidence 455777888887776655 7788999999999999999888 3222222111222222222222 11 1134
Q ss_pred HHHHhhhhhcCCCCcc
Q psy4341 193 ANAVDKRLESNGNGRE 208 (211)
Q Consensus 193 ~~~~~~~~~~~~~~~~ 208 (211)
|.+..+|++..++++.
T Consensus 105 ~~~~l~r~~~~~~~rr 120 (1188)
T COG3523 105 ALRTLKRRKRGRPGRR 120 (1188)
T ss_pred HHHHHHHHHhcCcccc
Confidence 6677888888776543
No 8
>PRK09609 hypothetical protein; Provisional
Probab=29.43 E-value=1.8e+02 Score=26.07 Aligned_cols=54 Identities=22% Similarity=0.235 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCccHHHHHHHHHHHhhcchhHHHHHHHhhhhccCC
Q psy4341 14 GGGVLMCLGDTIQQTIELYTKVDKTGYDLKRVAHMGIIGLVMGPPQHFFYKYLDKYLPKR 73 (211)
Q Consensus 14 ta~~l~~~gDiiaQ~~~~~~~~~~~~~D~~Rt~r~~~~G~~~gP~~h~wy~~Ld~~~p~~ 73 (211)
.+++..+++|++.=.+. +..+.+.=++.-++.|++.|-+..+.|+.+.++|.++
T Consensus 58 ~G~ivG~lsDLLs~li~------pG~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~ 111 (312)
T PRK09609 58 VGFFTGLLSDLISFLFV------PGVYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKE 111 (312)
T ss_pred HHHHHHHHHHHHHHHhc------CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46778889999986653 2478888888888999999999999999999998764
No 9
>TIGR01606 holin_BlyA holin, BlyA family. This family represents a BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage. This protein was previously proposed to be an hemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C-terminus.
Probab=29.25 E-value=49 Score=22.31 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=20.9
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhhcCCCCccCCC
Q psy4341 179 IVHHVEKDKIEENLANAVDKRLESNGNGREKKD 211 (211)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
+.+++-|++. +-+-+++.-++|+.||+|
T Consensus 35 ~~kP~~kd~L-----sili~K~~kn~n~kek~~ 62 (63)
T TIGR01606 35 IFKPVIKDML-----SILISKIKKNDNDKEKED 62 (63)
T ss_pred HhhHHHHHHH-----HHHHHHHHHhcCCccccC
Confidence 3445556666 457788999999999987
No 10
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=27.02 E-value=4.7e+02 Score=25.02 Aligned_cols=52 Identities=10% Similarity=0.188 Sum_probs=38.5
Q ss_pred HHHHHhhhHHHHHhcceechhHHhhhhhccCccchhhHHHHHHHHHHHHHhhh
Q psy4341 113 KEEIRDKFLVIYTTDCLLWPPCQFVNFTYISPQYRVMYVNLITIVYDIMLSYI 165 (211)
Q Consensus 113 ~~~l~~~~~~~l~~~~~vWp~~q~inF~~VP~~~Rvlf~n~v~~~Wn~yLS~~ 165 (211)
++.+|+.++..+.++..+..+.-+++ .|+-+++=-+...+++++-.+.....
T Consensus 202 ~k~~r~~~p~~L~~g~~~~~~~~~~a-~~~gpel~~i~g~l~~l~~~~~~~r~ 253 (522)
T PF02652_consen 202 WKGVREVWPFALVAGLSFAIPQWLVA-NFLGPELPGILGGLVGLAVLVLFLRF 253 (522)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-HHcccccchHHHHHHHHHHHHHHHHH
Confidence 45667788888888888777666666 44667888888888888877765444
No 11
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=26.33 E-value=1.9e+02 Score=18.72 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCccHHHHHHHHHHHhhcchhHHHHHH
Q psy4341 9 YTNSLGGGVLMCLGDTIQQTIELYTKVDKTGYDLKRVAHMGIIGLVMGPPQHFFYK 64 (211)
Q Consensus 9 ltk~ita~~l~~~gDiiaQ~~~~~~~~~~~~~D~~Rt~r~~~~G~~~gP~~h~wy~ 64 (211)
+++.++...-...||.++|.+ +........+++.+.+-....||.
T Consensus 5 ~a~ilt~~lGt~~~D~l~~~l-----------glg~~~~~~~~~~~l~~~~~~~~~ 49 (55)
T PF03988_consen 5 IAKILTTTLGTTAGDFLSKTL-----------GLGYLISTLIFAALLAVVLALWYR 49 (55)
T ss_pred HHHHHHHHhHHHHHHHHHhcc-----------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999953 233444445555443334445543
No 12
>KOG2235|consensus
Probab=23.20 E-value=30 Score=33.77 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=28.6
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhhhcCCCCccCC
Q psy4341 178 EIVHHVEKDKIEENLANAVDKRLESNGNGREKK 210 (211)
Q Consensus 178 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
|.+.+-.|++.+|+-+.|+-++=.+.|+|||||
T Consensus 406 e~gs~~kkdk~derr~ka~eg~~~~g~~grekk 438 (776)
T KOG2235|consen 406 EKGSKGKKDKVDERREKADEGDGGGGGKGREKK 438 (776)
T ss_pred cccccccchhHHHHHhhcccCCCCCCccccccc
Confidence 455557788999999999999999999999986
No 13
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=23.06 E-value=36 Score=22.72 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.4
Q ss_pred HHHHHHhhhhhcCCCCcc
Q psy4341 191 NLANAVDKRLESNGNGRE 208 (211)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~ 208 (211)
.+|++.+.+++|.|+|.+
T Consensus 36 ~~a~~~gL~s~S~G~g~~ 53 (60)
T cd02640 36 QIAQKYGLKSRSYGSGND 53 (60)
T ss_pred HHHHHcCCceeeEeCCCC
Confidence 567889999999999875
No 14
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.98 E-value=2e+02 Score=20.17 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=30.3
Q ss_pred hhccCccchhhHHHHHHHHHHHHHhhhhcCCcccCccchhhhhhhhhhhHHHHHHHHHhhhhh
Q psy4341 139 FTYISPQYRVMYVNLITIVYDIMLSYIKYNDDVFGLRGEEIVHHVEKDKIEENLANAVDKRLE 201 (211)
Q Consensus 139 F~~VP~~~Rvlf~n~v~~~Wn~yLS~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 201 (211)
|..+|. +.|+-+|+-.|-+ |-|.+.++...+++.+|... =.++. ..|+.|..|.+
T Consensus 5 fl~~Pl---iiF~ifVaPiWL~-LHY~sk~~~~~~Ls~~d~~~--L~~L~--~~A~rm~~RI~ 59 (75)
T PRK09458 5 FLAIPL---TIFVLFVAPIWLW-LHYRSKRQGSQGLSQEEQQR--LAQLT--EKAERMRERIQ 59 (75)
T ss_pred HHHHhH---HHHHHHHHHHHHH-HhhcccccCCCCCCHHHHHH--HHHHH--HHHHHHHHHHH
Confidence 344454 5677788888854 56666666555555443211 11222 45666666654
No 15
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=22.22 E-value=2.4e+02 Score=18.52 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhccCCchHHHHHHHHHHhhhhhhHHHHHHHH
Q psy4341 59 QHFFYKYLDKYLPKRSGKSIALKLCFDQAIISPVCIIIFLY 99 (211)
Q Consensus 59 ~h~wy~~Ld~~~p~~~~~~v~~Kvl~Dq~v~aP~~~~~f~~ 99 (211)
=|...-+.|..+..+++.-++.|.++..+++--+.+..++.
T Consensus 6 rH~~myfce~k~R~NsF~fViik~vismimylilGi~L~yi 46 (54)
T PF04835_consen 6 RHCFMYFCENKLRPNSFWFVIIKSVISMIMYLILGIALIYI 46 (54)
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36666778888888889999999999988776666555443
No 16
>cd02577 PSTD1 PSTD1: Pseudouridine synthase, a subgroup of the TruD family. This group consists of several hypothetical archeal pseudouridine synthases assigned to the TruD family of psuedouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). The TruD family is comprised of proteins related to Escherichia coli TruD.
Probab=21.86 E-value=1.7e+02 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=24.5
Q ss_pred hhccCccchhhHHH-HHHHHHHHHHhhhhc
Q psy4341 139 FTYISPQYRVMYVN-LITIVYDIMLSYIKY 167 (211)
Q Consensus 139 F~~VP~~~Rvlf~n-~v~~~Wn~yLS~~~~ 167 (211)
|.-+|...|.+|++ --|.+||-.+|..-.
T Consensus 228 l~~iP~~lr~myvhAYQSylfN~~lS~Ri~ 257 (319)
T cd02577 228 FLALPKNLRRMFVHAYQSYLFNEILSERIE 257 (319)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999988 678999999997764
Done!