Query psy4341
Match_columns 211
No_of_seqs 154 out of 976
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:08:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e97_A Lysozyme; hydrolase, al 16.3 40 0.0014 26.2 0.7 51 150-201 119-170 (187)
2 2ljh_A Double-stranded RNA-spe 15.6 98 0.0034 22.2 2.6 26 183-208 82-107 (114)
3 2vqc_A Hypothetical 13.2 kDa p 14.7 44 0.0015 23.5 0.5 27 20-50 31-57 (118)
4 1fs1_B SKP1, cyclin A/CDK2-ass 14.3 1.8E+02 0.0062 21.2 3.9 33 89-121 106-140 (141)
5 1p9i_A Cortexillin I/GCN4 hybr 11.8 1.1E+02 0.0039 16.4 1.5 19 176-194 10-28 (31)
6 1bm9_A RTP, TER, replication t 11.8 2.1E+02 0.0072 20.8 3.5 51 150-204 12-68 (122)
7 2ksd_A Aerobic respiration con 11.5 34 0.0012 25.0 -0.9 50 15-66 27-76 (115)
8 2drn_C 24-residues peptide fro 11.0 1.5E+02 0.0051 15.6 1.7 19 187-205 2-23 (26)
9 2kii_A Putative uncharacterize 10.7 3E+02 0.01 20.8 4.4 70 56-125 3-78 (181)
10 2hq4_A Hypothetical protein PH 9.6 71 0.0024 24.1 0.2 62 112-192 43-104 (161)
No 1
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=16.34 E-value=40 Score=26.15 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhhhcCC-cccCccchhhhhhhhhhhHHHHHHHHHhhhhh
Q psy4341 150 YVNLITIVYDIMLSYIKYND-DVFGLRGEEIVHHVEKDKIEENLANAVDKRLE 201 (211)
Q Consensus 150 f~n~v~~~Wn~yLS~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 201 (211)
+..+|++++|+=..-+...+ ....+...+ -+.|...|.++.|+.||..|.+
T Consensus 119 ~~ALvsm~FNlG~~~l~kf~~ml~~ln~gd-~~~Aa~Em~dSrW~kQt~~Ra~ 170 (187)
T 4e97_A 119 RCAAINHVFQMGVTGVAGFTNVLRMLQQKR-WDEAAVNLAKSRWYNQCPDRAK 170 (187)
T ss_dssp HHHHHHHHHHHCHHHHHTCHHHHHHHHTTC-HHHHHHHHTTSHHHHHSHHHHH
T ss_pred HHHheeeeeccCCcchhhCHHHHHHHHcCC-HHHHHHHHHhchhhccCcHHHH
Confidence 34456666665443333222 222222222 3446778889999999988865
No 2
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=15.57 E-value=98 Score=22.25 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=21.9
Q ss_pred hhhhhHHHHHHHHHhhhhhcCCCCcc
Q psy4341 183 VEKDKIEENLANAVDKRLESNGNGRE 208 (211)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (211)
..|+.-|+.+|+++..+|...+|+..
T Consensus 82 ~SKK~AEq~AA~~AL~~L~~~~~~~~ 107 (114)
T 2ljh_A 82 RSKKVARIEAAATALRSFIQFKDGAV 107 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 56778889999999999999888764
No 3
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=14.70 E-value=44 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhcccccCCCCccHHHHHHHHH
Q psy4341 20 CLGDTIQQTIELYTKVDKTGYDLKRVAHMGI 50 (211)
Q Consensus 20 ~~gDiiaQ~~~~~~~~~~~~~D~~Rt~r~~~ 50 (211)
.+-|++||.-.. -+..++..|++++..
T Consensus 31 sledilaqfeis----~~sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEIS----VPSAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCC----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheec----cchHhHHHHHHHHHH
Confidence 367889998443 134688889988865
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=14.33 E-value=1.8e+02 Score=21.16 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHhcCCChHHHHHH--HHhhhH
Q psy4341 89 ISPVCIIIFLYGMGILEAKPKDEIKEE--IRDKFL 121 (211)
Q Consensus 89 ~aP~~~~~f~~~~~~leG~s~~~i~~~--l~~~~~ 121 (211)
.-++.-.+--.+...++|+|++++++. +.++|.
T Consensus 106 I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~t 140 (141)
T 1fs1_B 106 IKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFT 140 (141)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHTC------
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence 344444444455567899999998774 355553
No 5
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=11.83 E-value=1.1e+02 Score=16.36 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=14.5
Q ss_pred chhhhhhhhhhhHHHHHHH
Q psy4341 176 GEEIVHHVEKDKIEENLAN 194 (211)
Q Consensus 176 ~~e~~~~~~~~~~~~~~~~ 194 (211)
.-|.++++-|.++||-+|.
T Consensus 10 sleaenkqlkakveellak 28 (31)
T 1p9i_A 10 SLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3477788888889888774
No 6
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=11.76 E-value=2.1e+02 Score=20.84 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhhhcCCcccCccchhhhhhhh------hhhHHHHHHHHHhhhhhcCC
Q psy4341 150 YVNLITIVYDIMLSYIKYNDDVFGLRGEEIVHHVE------KDKIEENLANAVDKRLESNG 204 (211)
Q Consensus 150 f~n~v~~~Wn~yLS~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~~~~~~~~~~ 204 (211)
.+..-+|+|...|..+..++.. |-|+.+.-. --.+++.--=.++.||+.+|
T Consensus 12 ~~~~~~fl~l~IL~ll~~~p~Y----GYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~G 68 (122)
T 1bm9_A 12 LVKQRAFLKLYMITMTEQERLY----GLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDG 68 (122)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCB----STTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCch----HHHHHHHHHHhhccCcccCCcccHHHHHHHHHHCC
Confidence 3456789999999999887766 555555543 22455555667788888777
No 7
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=11.54 E-value=34 Score=24.98 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCccHHHHHHHHHHHhhcchhHHHHHHHh
Q psy4341 15 GGVLMCLGDTIQQTIELYTKVDKTGYDLKRVAHMGIIGLVMGPPQHFFYKYL 66 (211)
Q Consensus 15 a~~l~~~gDiiaQ~~~~~~~~~~~~~D~~Rt~r~~~~G~~~gP~~h~wy~~L 66 (211)
+.++..+-+++.|.+...-- .+++++.-..|..++|.+.+|+.-|++..+
T Consensus 27 ~~~~l~v~A~~~q~~~~~~~--~G~v~~~Di~rsI~Fgli~aP~viYFls~v 76 (115)
T 2ksd_A 27 LALALVVLAIVVQMAVTMVL--HGQVESIDVIRSIFFGLLITPWAVYFLSVV 76 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--CCCSSSSSCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhh--cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777787654321 223333334455678888999988888765
No 8
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=10.96 E-value=1.5e+02 Score=15.60 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=10.4
Q ss_pred hHHHHHH---HHHhhhhhcCCC
Q psy4341 187 KIEENLA---NAVDKRLESNGN 205 (211)
Q Consensus 187 ~~~~~~~---~~~~~~~~~~~~ 205 (211)
.+||.+- .||..+.+.+|-
T Consensus 2 sIEEaA~RIVdaVi~qvkasga 23 (26)
T 2drn_C 2 LIEEAASRIVDAVIEQVKAAGA 23 (26)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTT
T ss_pred cHHHHHHHHHHHHHHHHHhccc
Confidence 3455444 356666666663
No 9
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=10.71 E-value=3e+02 Score=20.81 Aligned_cols=70 Identities=4% Similarity=-0.054 Sum_probs=47.4
Q ss_pred chhHHHHHHHhhhhccCCchHHHHHHHHHHhhhhhhH------HHHHHHHHHHHhcCCChHHHHHHHHhhhHHHHH
Q psy4341 56 GPPQHFFYKYLDKYLPKRSGKSIALKLCFDQAIISPV------CIIIFLYGMGILEAKPKDEIKEEIRDKFLVIYT 125 (211)
Q Consensus 56 gP~~h~wy~~Ld~~~p~~~~~~v~~Kvl~Dq~v~aP~------~~~~f~~~~~~leG~s~~~i~~~l~~~~~~~l~ 125 (211)
|-+...|-.++...++...|..++.+.-++.-+|.|. .+.-.+...+-.-|.+.+++.+.+-+.+...+.
T Consensus 3 G~I~~~~~~~v~~~~G~e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~~~g~~~~~ll~~fG~~~~~~~~ 78 (181)
T 2kii_A 3 GIIFNVLEDMVVAQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVKAFGQFLFNGLA 78 (181)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHcCHHHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5667788888888887777777777776665566554 233444455556688988888877666555443
No 10
>2hq4_A Hypothetical protein PH1570; singleton protein, structural genomics, PSI southeast collaboratory for structural genomics, secsg; 1.99A {Pyrococcus horikoshii} SCOP: d.342.1.1
Probab=9.64 E-value=71 Score=24.06 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHhhhHHHHHhcceechhHHhhhhhccCccchhhHHHHHHHHHHHHHhhhhcCCcccCccchhhhhhhhhhhHHHH
Q psy4341 112 IKEEIRDKFLVIYTTDCLLWPPCQFVNFTYISPQYRVMYVNLITIVYDIMLSYIKYNDDVFGLRGEEIVHHVEKDKIEEN 191 (211)
Q Consensus 112 i~~~l~~~~~~~l~~~~~vWp~~q~inF~~VP~~~Rvlf~n~v~~~Wn~yLS~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 191 (211)
...-+++-|.|.+-..+. -+| -|+-=+|++|+.--.-......++.-.-+..+.++++++.
T Consensus 43 LLA~I~ELYlPdYG~eYv------------------YPF-ECAKEfWgiYmd~~ei~~Ee~~l~piKF~~~sv~~kle~~ 103 (161)
T 2hq4_A 43 LLAMIYELYLPEYGREYV------------------YPF-ECAKEFWNIYLEGEEIQDEEFQLKPIKFTSEQVIKKLQEE 103 (161)
T ss_dssp HHHHHHHHHHHHHCSSCC------------------HHH-HHHHHHHTCCCCGGGCCC---CCEECSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCccce------------------ehH-HhhHhhhheeechhhccccccCCCCchhhHHHHHHHHHHH
Confidence 345566667666655543 222 4566789999765444444444444455555556655554
Q ss_pred H
Q psy4341 192 L 192 (211)
Q Consensus 192 ~ 192 (211)
+
T Consensus 104 L 104 (161)
T 2hq4_A 104 I 104 (161)
T ss_dssp H
T ss_pred H
Confidence 4
Done!