Query psy4341
Match_columns 211
No_of_seqs 154 out of 976
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 23:08:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4341.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4341hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 23.5 10 0.00075 22.9 0.5 27 20-50 22-48 (70)
2 d1swya_ d.2.1.3 (A:) Phage T4 16.2 17 0.0013 25.6 0.5 53 149-202 95-148 (164)
3 d1di2a_ d.50.1.1 (A:) Double-s 14.0 44 0.0032 19.8 2.0 21 182-202 49-69 (69)
4 d1k28a3 d.2.1.3 (A:130-345) Ta 12.4 40 0.0029 25.0 1.7 54 147-201 142-196 (216)
5 d1h2vc1 a.118.1.14 (C:29-290) 9.8 2.9E+02 0.021 20.3 6.2 70 75-144 36-114 (262)
6 d1jqra_ d.218.1.2 (A:) DNA pol 8.6 45 0.0033 23.8 0.6 16 133-148 159-174 (174)
7 d2hq4a1 d.342.1.1 (A:1-152) Hy 8.3 41 0.003 23.3 0.2 63 112-193 34-96 (152)
8 d1jt6a2 a.121.1.1 (A:73-187) M 8.0 97 0.0071 20.3 2.2 43 17-65 51-93 (115)
9 d2nuga2 d.50.1.1 (A:151-218) R 7.3 1E+02 0.0076 17.8 1.9 19 183-201 50-68 (68)
10 d2v9va1 a.4.5.35 (A:377-437) C 7.3 1.1E+02 0.0082 17.3 1.9 20 23-46 5-24 (61)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=23.50 E-value=10 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHHhhhhcccccCCCCccHHHHHHHHH
Q psy4341 20 CLGDTIQQTIELYTKVDKTGYDLKRVAHMGI 50 (211)
Q Consensus 20 ~~gDiiaQ~~~~~~~~~~~~~D~~Rt~r~~~ 50 (211)
.+-|++||.-.. -+..++..|++++..
T Consensus 22 ~ledilaqfeis----~~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEIS----VPSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCC----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheec----cchHhHHHHHHHHHH
Confidence 357899998443 134688889998764
No 2
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
Probab=16.22 E-value=17 Score=25.57 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHhhhhcCC-cccCccchhhhhhhhhhhHHHHHHHHHhhhhhc
Q psy4341 149 MYVNLITIVYDIMLSYIKYND-DVFGLRGEEIVHHVEKDKIEENLANAVDKRLES 202 (211)
Q Consensus 149 lf~n~v~~~Wn~yLS~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
.+..++++++|+=..-+.... ....+.. .=-+.|...|+++.|++|+.+|.+.
T Consensus 95 ~~~alvs~~fNlG~~~~~~f~~~~~~l~~-gd~~~Aa~e~~~S~W~kq~~~R~~~ 148 (164)
T d1swya_ 95 RECALINMVFQMGETGVAGFTNSLRMLQQ-KRWDEAAVNLAKSRWYNQTPNRAKR 148 (164)
T ss_dssp HHHHHHHHHHHHCHHHHHTCHHHHHHHHT-TCHHHHHHHHTSSHHHHHSHHHHHH
T ss_pred HHHHHeechhhcCCchhccChHHHHHHHC-CCHHHHHHHHHhhhhhhhccHHHHH
Confidence 445566777775444333221 2211222 2234455667778899999998765
No 3
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=13.98 E-value=44 Score=19.81 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=16.1
Q ss_pred hhhhhhHHHHHHHHHhhhhhc
Q psy4341 182 HVEKDKIEENLANAVDKRLES 202 (211)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ 202 (211)
-..|+.-++.+|+.++++|+|
T Consensus 49 g~sKK~Aeq~AA~~aL~~L~s 69 (69)
T d1di2a_ 49 GTSKQVAKRVAAEKLLTKFKT 69 (69)
T ss_dssp ESSHHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHHHhcC
Confidence 346777788888888888875
No 4
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]}
Probab=12.40 E-value=40 Score=24.99 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhc-CCcccCccchhhhhhhhhhhHHHHHHHHHhhhhh
Q psy4341 147 RVMYVNLITIVYDIMLSYIKY-NDDVFGLRGEEIVHHVEKDKIEENLANAVDKRLE 201 (211)
Q Consensus 147 Rvlf~n~v~~~Wn~yLS~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 201 (211)
+..+..++++.+|+=..-+.. ++...++...+ -+.|...|+++.||+|+.+|.+
T Consensus 142 ~~~q~ALvsm~FNlG~~~l~kF~~~~~al~~gd-~~~Aa~EmldS~W~kQt~~Ra~ 196 (216)
T d1k28a3 142 RSRQMALENMAFQMGVGGVAKFNTMLTAMLAGD-WEKAYKAGRDSLWYQQTKGRAS 196 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTC-HHHHHHHHHSSHHHHHHTHHHH
T ss_pred HHHHHHHhcceeccCCchhcccHHHHHHHHcCC-HHHHHHHHHhhhhhhcccHHHH
Confidence 345566777777766554433 22333333323 3445566888899999988864
No 5
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.79 E-value=2.9e+02 Score=20.28 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCChH---HHHHHHHhhhHHHHHhc------ceechhHHhhhhhccCc
Q psy4341 75 GKSIALKLCFDQAIISPVCIIIFLYGMGILEAKPKD---EIKEEIRDKFLVIYTTD------CLLWPPCQFVNFTYISP 144 (211)
Q Consensus 75 ~~~v~~Kvl~Dq~v~aP~~~~~f~~~~~~leG~s~~---~i~~~l~~~~~~~l~~~------~~vWp~~q~inF~~VP~ 144 (211)
.+..+.+.+++.....|..++.|-+..++++-+..+ ++.+++.+.+-..+..+ ..+--+++++|+..++.
T Consensus 36 ~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 36 YKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 355677888888888898888888888888877643 55666666666666543 22345667777777665
No 6
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]}
Probab=8.55 E-value=45 Score=23.77 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.7
Q ss_pred hHHhhhhhccCccchh
Q psy4341 133 PCQFVNFTYISPQYRV 148 (211)
Q Consensus 133 ~~q~inF~~VP~~~Rv 148 (211)
+++.++.-|+||+.|+
T Consensus 159 If~~LGl~yipPe~R~ 174 (174)
T d1jqra_ 159 LIKELGFTYRIPKKRL 174 (174)
T ss_dssp HHHHHTCCCCCGGGCC
T ss_pred HHHHcCCCCCChHhcC
Confidence 4788899999999985
No 7
>d2hq4a1 d.342.1.1 (A:1-152) Hypothetical protein PH1570 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.33 E-value=41 Score=23.32 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=34.8
Q ss_pred HHHHHHhhhHHHHHhcceechhHHhhhhhccCccchhhHHHHHHHHHHHHHhhhhcCCcccCccchhhhhhhhhhhHHHH
Q psy4341 112 IKEEIRDKFLVIYTTDCLLWPPCQFVNFTYISPQYRVMYVNLITIVYDIMLSYIKYNDDVFGLRGEEIVHHVEKDKIEEN 191 (211)
Q Consensus 112 i~~~l~~~~~~~l~~~~~vWp~~q~inF~~VP~~~Rvlf~n~v~~~Wn~yLS~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 191 (211)
...-+++-|.|.+-..+. -+| -|+-=+|++||.--.-......+++-.-+..+..+++++.
T Consensus 34 LLA~I~ELYlPdYG~eYv------------------YPF-ECAKEfWgiYmd~~ei~~Ee~~l~piKF~~~sV~~kle~~ 94 (152)
T d2hq4a1 34 LLAMIYELYLPEYGREYV------------------YPF-ECAKEFWNIYLEGEEIQDEEFQLKPIKFTSEQVIKKLQEE 94 (152)
T ss_dssp HHHHHHHHHHHHHCSSCC------------------HHH-HHHHHHHTCCCCGGGCCC---CCEECSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccc------------------chH-HHhHHhhheeechhhccccccCCCCcchhhHHHHHHHHHH
Confidence 445566677776665543 222 4566789999765444444444444455556666666555
Q ss_pred HH
Q psy4341 192 LA 193 (211)
Q Consensus 192 ~~ 193 (211)
+.
T Consensus 95 l~ 96 (152)
T d2hq4a1 95 IK 96 (152)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 8
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=7.96 E-value=97 Score=20.26 Aligned_cols=43 Identities=7% Similarity=-0.160 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhcccccCCCCccHHHHHHHHHHHhhcchhHHHHHHH
Q psy4341 17 VLMCLGDTIQQTIELYTKVDKTGYDLKRVAHMGIIGLVMGPPQHFFYKY 65 (211)
Q Consensus 17 ~l~~~gDiiaQ~~~~~~~~~~~~~D~~Rt~r~~~~G~~~gP~~h~wy~~ 65 (211)
-.-...++|.|.++. .....+-.+....++.|.+.|.. .||+-
T Consensus 51 y~~~~~~Ii~eGi~~----G~f~~~d~~~~~~~il~~lng~~--~Wy~~ 93 (115)
T d1jt6a2 51 YIDAYHVIFKEGNLN----GEWSINDVNAVSKIAANAVNGIV--TFTHE 93 (115)
T ss_dssp HHHHHHHHHHHHHTT----TSCCCSCHHHHHHHHHHHHHHHH--HSCTT
T ss_pred HHHHHHHHHHHHHHC----CceeccCHHHHHHHHHHHHHHHH--HHhcc
Confidence 344556666666654 22233345788888888887544 57764
No 9
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=7.30 E-value=1e+02 Score=17.77 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHHHHhhhhh
Q psy4341 183 VEKDKIEENLANAVDKRLE 201 (211)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ 201 (211)
..|+.-++.+|+.++..|+
T Consensus 50 ~sKK~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 50 KSKKEAEQRAAEELIKLLE 68 (68)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 4577888888888887764
No 10
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=7.27 E-value=1.1e+02 Score=17.32 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=14.1
Q ss_pred HHHHhhhhcccccCCCCccHHHHH
Q psy4341 23 DTIQQTIELYTKVDKTGYDLKRVA 46 (211)
Q Consensus 23 DiiaQ~~~~~~~~~~~~~D~~Rt~ 46 (211)
.++||.+..+ ++.+||....
T Consensus 5 kilaqiiqeh----regldwqeaa 24 (61)
T d2v9va1 5 KILAQIIQEH----REGLDWQEAA 24 (61)
T ss_dssp HHHHHHHHHC----SSCEEHHHHH
T ss_pred HHHHHHHHHH----HccCcHHHHH
Confidence 4788998874 4678877554
Done!