RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4341
(211 letters)
>gnl|CDD|202894 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family. The 22-kDa
peroxisomal membrane protein (PMP22) is a major
component of peroxisomal membranes. PMP22 seems to be
involved in pore forming activity and may contribute to
the unspecific permeability of the organelle membrane.
PMP22 is synthesised on free cytosolic ribosomes and
then directed to the peroxisome membrane by specific
targeting information. Mpv17 is a closely related
peroxisomal protein. In mouse, the Mpv17 protein is
involved in the development of early-onset
glomerulosclerosis. More recently a homolog of Mpv17 in
S. cerevisiae has been been found to be an integral
membrane protein of the inner mitochondrial membrane
where it has been proposed to have a role in ethanol
metabolism and tolerance during heat-shock. Defects in
MPV17 is associated with mitochondrial DNA depletion
syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS
is a clinically heterogeneous group of disorders
characterized by a reduction in mitochondrial DNA
(mtDNA) copy number. Primary mtDNA depletion is
inherited as an autosomal recessive trait and may affect
single organs, typically muscle or liver, or multiple
tissues. Individuals with the hepatocerebral form of
mitochondrial DNA depletion syndrome have early
progressive liver failure and neurologic abnormalities,
hypoglycemia, and increased lactate in body fluids. NNH
is an autosomal recessive disease that is prevalent
among Navajo children in the South Western states of
America. The major clinical features are hepatopathy,
peripheral neuropathy, corneal anesthesia and scarring,
acral mutilation, cerebral leukoencephalopathy, failure
to thrive, and recurrent metabolic acidosis with
intercurrent infections. Infantile, childhood, and
classic forms of NNH have been described. Mitochondrial
DNA depletion was detected in the livers of patients,
suggesting a primary defect in mtDNA maintenance.
Length = 68
Score = 91.9 bits (229), Expect = 8e-25
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 101 MGILEAKPKDEIKEEIRDKFLVIYTTDCLLWPPCQFVNFTYISPQYRVMYVNLITIVYDI 160
MG+LE K +EIKE++++KF + +WPP QF+NF ++ YRV++VNL+ I ++
Sbjct: 1 MGLLEGKSLEEIKEKLKEKFWPTLKANWKVWPPVQFINFAFVPVHYRVLFVNLVGIGWNT 60
Query: 161 MLSYIKYN 168
LSY+
Sbjct: 61 YLSYVNNK 68
>gnl|CDD|224891 COG1980, COG1980, Archaeal fructose 1,6-bisphosphatase
[Carbohydrate transport and metabolism].
Length = 369
Score = 29.3 bits (66), Expect = 1.5
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 160 IMLSYIKYNDDVFGLRGEEIVHHVEKDKIEENLANAVDKRL 200
+ +S IK DV L G VH + EE L AV +
Sbjct: 3 VTISVIK--ADVGSLPGHSRVHPDLIEAAEEVLEEAVKNGI 41
>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit.
Length = 200
Score = 28.7 bits (65), Expect = 1.5
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 8 FYTNSLGGGVLMCLG--DTIQQ 27
+ NS GG V+ L DT+Q
Sbjct: 65 LFINSPGGSVISGLAIYDTMQF 86
>gnl|CDD|232828 TIGR00110, ilvD, dihydroxy-acid dehydratase. This protein,
dihydroxy-acid dehydratase, catalyzes the fourth step in
valine and isoleucine biosynthesis. It contains a
catalytically essential [4Fe-4S] cluster This model
generates scores of up to 150 bits vs.
6-phosphogluconate dehydratase, a homologous enzyme
[Amino acid biosynthesis, Pyruvate family].
Length = 535
Score = 28.9 bits (65), Expect = 2.3
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 5 KYLFYTNSLGGGVLMCLGDTIQQTIELYTKVDKTGYDLKR 44
K L L G L G T+ + +E V G D+ R
Sbjct: 306 KELDREGLLHGDTLTVTGKTLGEILEQA-PVIPEGQDVIR 344
>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional.
Length = 215
Score = 27.0 bits (59), Expect = 7.2
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 101 MGILEAKPKDEIKEEIRDKFLVIYTTDCLLWPPC--QFVNFTYISPQYRVMYVNLITIVY 158
M ++ + + E+ K+ V+++ P C +FV F + ++ + LI +
Sbjct: 11 MEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSV 70
Query: 159 DIMLSYIKY 167
D + S+IK+
Sbjct: 71 DQVFSHIKW 79
>gnl|CDD|204444 pfam10319, 7TM_GPCR_Srj, Serpentine type 7TM GPCR chemoreceptor
Srj. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srj is part of the Str
superfamily of chemoreceptors. The srj family is
designated as the out-group based on its location in
preliminary phylogenetic analyses of the entire
superfamily. Chemoperception is one of the central
senses of soil nematodes like C. elegans which are
otherwise 'blind' and 'deaf'.
Length = 310
Score = 26.8 bits (60), Expect = 9.5
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 60 HFFYKYLDKYLPKRSGKSIALKLCFDQAIISPVCIIIFLYGMGILEAKPKDEIKEEIRDK 119
HF Y+YL + P+ + + + + DEI++ IR+
Sbjct: 109 HFIYRYLVLFNPQLTRHYFRPWGLLISILFF-LFHGSVWTAICYFCLYADDEIRDYIRED 167
Query: 120 FLVIYTTDC 128
F Y D
Sbjct: 168 FRETYGVDS 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.144 0.434
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,132,682
Number of extensions: 1088965
Number of successful extensions: 969
Number of sequences better than 10.0: 1
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 16
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)