RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4341
         (211 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.015
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 26/96 (27%)

Query: 46  AHMGIIGL-VMGPPQHFFYKYLDK---YLPKRSGKSIALKLCFDQAIIS--PVCIIIFLY 99
           + M    L +    Q     Y++K   +LP      I+L       ++S  P      LY
Sbjct: 336 SPM----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS----LY 387

Query: 100 GM-----------GILEAK-PKDEIKEEIRDKFLVI 123
           G+           G+ +++ P  E K +  ++FL +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423



 Score = 30.0 bits (67), Expect = 0.70
 Identities = 36/187 (19%), Positives = 50/187 (26%), Gaps = 74/187 (39%)

Query: 14  GGGV----LMCLGDTIQQTIELYTKVDKTGYDLKRVAHMGIIGL--------VMGPPQ-- 59
             GV    L     T +Q   +   V+KT   L     + I  L        V GPPQ  
Sbjct: 331 NEGVPSPMLSISNLTQEQ---VQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPPQSL 386

Query: 60  HFFYKYLDKYLPKRSGKSIALKLCFDQAII-----SPVCIIIFL---------YGMG--- 102
           +     L K     SG         DQ+ I            FL           +    
Sbjct: 387 YGLNLTLRK-AKAPSGL--------DQSRIPFSERKLKFSNRFLPVASPFHSHL-LVPAS 436

Query: 103 --ILEAKPKDEIKEEIRDKFLVI--YTT------------------DCLL-----WPPCQ 135
             I +   K+ +      K + I  Y T                  DC++     W    
Sbjct: 437 DLINKDLVKNNV--SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494

Query: 136 FVNFTYI 142
               T+I
Sbjct: 495 QFKATHI 501


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.6 bits (68), Expect = 0.37
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 43/150 (28%)

Query: 64  KYLDKYLPKRSGKSIALKLCFDQAIISPVCI--IIFLYGMGI---LEAKPKDEIKEEIRD 118
             +D Y   +          FD   + P  +    + +   I   L+     E     R 
Sbjct: 448 SIVDHYNIPK---------TFDSDDLIPPYLDQYFYSH---IGHHLKNIEHPERMTLFRM 495

Query: 119 KFLVIYTTDCLLWPPCQFVNFTYISPQYR--VMYVNLITIVYDIML------SYIKYNDD 170
            FL                +F ++  + R      N    + + +        YI  ND 
Sbjct: 496 VFL----------------DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 171 VFGLRGEEIVHHVEKDKIEENLANAVDKRL 200
            +      I+  +   KIEENL  +    L
Sbjct: 540 KYERLVNAILDFLP--KIEENLICSKYTDL 567



 Score = 27.1 bits (59), Expect = 5.1
 Identities = 17/141 (12%), Positives = 46/141 (32%), Gaps = 28/141 (19%)

Query: 66  LDKYLPKRSGKSIALKLCFDQAIISPVCIIIFLYGMG-------ILEAKPKDEIKEEIRD 118
             KY   R    + L+    +   +     + + G+         L+     +++ ++  
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAK---NVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 119 KFLVIYTTDCLLWPPCQFVNFTYISPQYRVMYVNLITIVYDIMLSYIKYNDDVFGLRGEE 178
           K   I+      W     +N    +    V+   L  ++Y I  ++   +D    ++   
Sbjct: 183 K---IF------W-----LNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 179 IVHHVEKDKIEENLANAVDKR 199
              H  + ++   L +   + 
Sbjct: 228 ---HSIQAELRRLLKSKPYEN 245


>2owy_A Recombination-associated protein RDGC; homologous recombination,
           RECA shaped DNA binding proteins, DNA binding protein;
           2.50A {Pseudomonas aeruginosa}
          Length = 306

 Score = 27.2 bits (60), Expect = 4.3
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 107 KPKDEIKEEIRDKFLVIYTTDCLLWPPCQFVNFTYISPQYRVMYVN 152
           K +D++K+EI    L             +   F  I+P   ++ V+
Sbjct: 102 KERDQLKDEIVQTLLPRA-------FIRRSSTFAAIAPSLGLILVD 140


>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for
           ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides}
           SCOP: c.30.1.2 d.142.1.1
          Length = 377

 Score = 26.8 bits (60), Expect = 6.3
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 39  GYDLKRVAHMGIIGLVMGPPQHFFYKYLDKYLPKRS 74
           G D   V+ +G   +        +Y Y +K++   +
Sbjct: 231 GNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSA 266


>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A
           {Acinetobacter glutaminasificans} SCOP: c.88.1.1
          Length = 331

 Score = 26.1 bits (58), Expect = 8.5
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 12  SLGGGVLMCLGDTIQQTIELYTKVDKTGYDLKRVAHMGIIGLVMGPPQHFFYKYLDKYLP 71
           +   GV++ + D+I    ++ TK              G +G ++    ++F         
Sbjct: 144 AKNKGVMVLMNDSIFAARDV-TKGINIHTHAFVSQW-GALGTLVEGKPYWFRS-----SV 196

Query: 72  KRSGKSIALKLCFDQAIISPVCIIIFLY-GMG--ILEA 106
           K+   +    +   Q    P   I++    M     +A
Sbjct: 197 KKHTNNSEFNIEKIQGDALPGVQIVYGSDNMMPDAYQA 234


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.144    0.434 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,347,819
Number of extensions: 202570
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 12
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.2 bits)