BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4343
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M0T|A Chain A, Yeast Glutathione Synthase
pdb|1M0T|B Chain B, Yeast Glutathione Synthase
pdb|1M0W|A Chain A, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
pdb|1M0W|B Chain B, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
Length = 491
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 11 PLSESVLADIIPKAKDYALMHGAGM---RSRTNFSEDSLINAPFALLPSSFPRKEFEKAV 67
P S+ L ++I + +A+ +G M + N S S+ +P + P+ PRK F++AV
Sbjct: 5 PPSKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASV--SPVTIYPTPIPRKCFDEAV 62
Query: 68 KIQPVLNELIHRVAHS 83
+IQPV NEL R+
Sbjct: 63 QIQPVFNELYARITQD 78
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 45 SLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLKETLKK 93
L++ P +LLP FP +++ ++ P+ NEL+ RV+ FL+E+L +
Sbjct: 72 GLVHLPLSLLPGPFPESHWKQGCELAPIFNELVDRVSLDGKFLQESLSR 120
>pdb|2HGS|A Chain A, Human Glutathione Synthetase
Length = 474
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 17 LADIIPKAKDYALMHGAGMRSRTNFSEDSLIN-APFALLPSSFPRKEFEKAVKIQPVLNE 75
L ++ +A D AL G +R+ + +++ APF L PS P E+A +Q N
Sbjct: 15 LEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNL 74
Query: 76 LIHRVAHSYSFLKETL 91
L+ V+ + +FL++TL
Sbjct: 75 LVDAVSQNAAFLEQTL 90
>pdb|2WYO|A Chain A, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|B Chain B, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|C Chain C, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|D Chain D, Trypanosoma Brucei Glutathione Synthetase
Length = 562
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 47 INAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLKETLKK 93
+ P L PS R EF +QP+ NE + A +++FL++ L++
Sbjct: 45 VPVPVTLQPSMISRGEFGTLCCMQPLWNEAVDNTARNFTFLRDALQE 91
>pdb|1Y97|A Chain A, The Human Trex2 3' Exonuclease Structure Suggests A
Mechanism For Efficient Non-Processive Dna Catalysis
pdb|1Y97|B Chain B, The Human Trex2 3' Exonuclease Structure Suggests A
Mechanism For Efficient Non-Processive Dna Catalysis
Length = 238
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 14 ESVLADIIP--KAKDYALMHGAGMRSRTNFSEDSLINAPFALLPSSFPRKEFEKAVKIQP 71
++V D +P + D A HG R R +S SL + F PS+ E + +
Sbjct: 143 DTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGD----VHT 198
Query: 72 VLNELIHRVAHSYSFLKETLK 92
+L +HR A ++ E +
Sbjct: 199 LLLIFLHRAAELLAWADEQAR 219
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 16/59 (27%)
Query: 45 SLINAPFALLPSSFPRKEFEKAVKIQP----------------VLNELIHRVAHSYSFL 87
SL P AL+PSS P + + + +P ++NEL HR+ Y+ L
Sbjct: 205 SLKVRPVALIPSSIPHEVPQILINREPLPHLHFDVELLGDCDVIINELCHRLGGEYAKL 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,460,083
Number of Sequences: 62578
Number of extensions: 81825
Number of successful extensions: 175
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 7
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)