BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4343
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35668|GSHB_XENLA Glutathione synthetase OS=Xenopus laevis GN=gss PE=2 SV=1
Length = 474
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 16 VLADIIPKAKDYALMHGAGMRSRTN-FSEDSLINAPFALLPSSFPRKEFEKAVKIQPVLN 74
+L ++ P A D AL+ G MR++ + S D + APFALLPS P+ FE+A +Q N
Sbjct: 14 LLEELAPIAIDAALLQGVLMRTKESPNSSDVVSFAPFALLPSPVPKALFEQAKCVQEDFN 73
Query: 75 ELIHRVAHSYSFLKETL 91
L+ R++ SFL++ L
Sbjct: 74 TLVDRISQDTSFLEQVL 90
>sp|O22494|GSHB_SOLLC Glutathione synthetase, chloroplastic OS=Solanum lycopersicum
GN=GSH2 PE=2 SV=1
Length = 546
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 34/48 (70%)
Query: 46 LINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLKETLKK 93
+++AP AL+P SFP +++A ++ P+ NEL+ RV+ FL+++L +
Sbjct: 120 MVHAPVALIPMSFPESHWKQACEVAPIFNELVDRVSQDGEFLQQSLSR 167
>sp|P46416|GSHB_ARATH Glutathione synthetase, chloroplastic OS=Arabidopsis thaliana
GN=GSH2 PE=2 SV=3
Length = 539
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 12 LSESVLADIIPKAKDYALMHGAGMRSRT-----NFSEDSLINAPFALLPSSFPRKEFEKA 66
L + + ++ A ++ +HG + ++ N L++AP ALLP++FP +++A
Sbjct: 74 LDDEFVQKLVYDALVWSSLHGLVVGDKSYQKSGNVPGVGLMHAPIALLPTAFPEAYWKQA 133
Query: 67 VKIQPVLNELIHRVAHSYSFLKETLKK 93
+ P+ NELI RV+ FL+++L +
Sbjct: 134 CNVTPLFNELIDRVSLDGKFLQDSLSR 160
>sp|P46413|GSHB_RAT Glutathione synthetase OS=Rattus norvegicus GN=Gss PE=1 SV=1
Length = 474
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 14 ESVLADIIPKAKDYALMHGAGMRSRTN-FSEDSLINAPFALLPSSFPRKEFEKAVKIQPV 72
E L ++ +A D AL G +RS N S D + APF L PS P E+A +Q
Sbjct: 12 EKQLEELAQQAIDRALAEGVLLRSAKNPSSSDVVTYAPFTLFPSPVPSTLLEQAYAVQMD 71
Query: 73 LNELIHRVAHSYSFLKETL 91
N L+ V+ + +FL++TL
Sbjct: 72 FNILVDAVSQNSAFLEQTL 90
>sp|Q08220|GSHB_YEAST Glutathione synthetase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GSH2 PE=1 SV=1
Length = 491
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 11 PLSESVLADIIPKAKDYALMHGAGM---RSRTNFSEDSLINAPFALLPSSFPRKEFEKAV 67
P S+ L ++I + +A+ +G M + N S S+ +P + P+ PRK F++AV
Sbjct: 5 PPSKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASV--SPVTIYPTPIPRKCFDEAV 62
Query: 68 KIQPVLNELIHRVAHS 83
+IQPV NEL R+
Sbjct: 63 QIQPVFNELYARITQD 78
>sp|O23732|GSHB_BRAJU Glutathione synthetase, chloroplastic OS=Brassica juncea GN=GSH2
PE=2 SV=1
Length = 530
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%)
Query: 45 SLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLKETLKK 93
+++AP ALLP+ FP + +A ++ P+ NEL+ R++ F++++L +
Sbjct: 103 GMMHAPIALLPTPFPESYWNQACEVAPIFNELVDRISLDGKFIQDSLSR 151
>sp|Q54E83|GSHB_DICDI Glutathione synthetase OS=Dictyostelium discoideum GN=gshB PE=3
SV=1
Length = 476
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 14 ESVLADIIPKAKDYALMHGAGMRSRTNFSE--DSLINA---PFALLPSSFPRKEFEKAVK 68
E L D+ + D+A +G M + E ++++N PF+L PS +K F +A K
Sbjct: 2 EEKLNDLKEQGIDWAFANGLIMIKKPTEEEAKNNVVNVTHVPFSLYPSKMNKKLFNEACK 61
Query: 69 IQPVLNELIHRVAHSYSFLKETLK 92
+ N L+H ++ Y FL+ TLK
Sbjct: 62 LAEDYNLLVHNISKDYDFLQNTLK 85
>sp|P51855|GSHB_MOUSE Glutathione synthetase OS=Mus musculus GN=Gss PE=2 SV=1
Length = 474
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 14 ESVLADIIPKAKDYALMHGAGMRSRTN-FSEDSLINAPFALLPSSFPRKEFEKAVKIQPV 72
E L ++ +A D AL G +RS + S D + APF L PS P E+A +Q
Sbjct: 12 EKQLEELAKQAIDRALAEGVLLRSAQHPSSSDVVTYAPFTLFPSPVPSALLEQAYAVQMD 71
Query: 73 LNELIHRVAHSYSFLKETL 91
N L+ V+ + +FL++TL
Sbjct: 72 FNILVDAVSQNPAFLEQTL 90
>sp|Q5EAC2|GSHB_BOVIN Glutathione synthetase OS=Bos taurus GN=GSS PE=2 SV=1
Length = 474
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 14 ESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLIN-APFALLPSSFPRKEFEKAVKIQPV 72
E L ++ +A D AL G +R+ S +++ APF L PS P E+A +Q
Sbjct: 12 EQQLEELARQAVDRALAEGVLLRTSQAPSSSHVVSYAPFTLFPSPVPSALLEQAYAVQAD 71
Query: 73 LNELIHRVAHSYSFLKETL 91
N L+ V+ + FL++TL
Sbjct: 72 FNLLVDAVSQNAVFLEQTL 90
>sp|Q8HXX5|GSHB_MACFA Glutathione synthetase OS=Macaca fascicularis GN=GSS PE=2 SV=1
Length = 474
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 13 SESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLIN-APFALLPSSFPRKEFEKAVKIQP 71
+E L ++ +A D AL G +R+ + +++ APF L PS P E+A +Q
Sbjct: 11 NEQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQM 70
Query: 72 VLNELIHRVAHSYSFLKETL 91
N L+ V + +FL++TL
Sbjct: 71 DFNLLVDAVNQNAAFLEQTL 90
>sp|P48637|GSHB_HUMAN Glutathione synthetase OS=Homo sapiens GN=GSS PE=1 SV=1
Length = 474
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 17 LADIIPKAKDYALMHGAGMRSRTNFSEDSLIN-APFALLPSSFPRKEFEKAVKIQPVLNE 75
L ++ +A D AL G +R+ + +++ APF L PS P E+A +Q N
Sbjct: 15 LEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNL 74
Query: 76 LIHRVAHSYSFLKETL 91
L+ V+ + +FL++TL
Sbjct: 75 LVDAVSQNAAFLEQTL 90
>sp|P35669|GSHB_SCHPO Glutathione synthetase large chain OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=gsa1 PE=1 SV=2
Length = 498
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 24 AKDYALMHGAGMRSRTNFSEDSLI--NAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVA 81
A+D+A HG + E I P L PS P F +AV +Q N+L ++A
Sbjct: 18 ARDFAFAHGVVFTELSVSKEGRNIATQIPITLFPSVIPHGAFVEAVSVQKAYNKLYAKIA 77
Query: 82 HSYSFLK 88
+ Y FL+
Sbjct: 78 NDYEFLR 84
>sp|P12915|POLG_BOVEV Genome polyprotein OS=Bovine enterovirus (strain VG-5-27) PE=1 SV=3
Length = 2175
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 4 LNSSIETPLSESVLADIIPKAKDYALMHGAGMRSRTNFSE 43
+N+ +T L SV D+ P K+ A++H R TNF E
Sbjct: 1731 INAPTQTKLEPSVFFDVFPGVKEPAVLHKKDKRLETNFEE 1770
>sp|Q6MBP0|TRMB_PARUW tRNA (guanine-N(7)-)-methyltransferase OS=Protochlamydia
amoebophila (strain UWE25) GN=trmB PE=3 SV=1
Length = 225
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 32 GAGMRSRTNFSEDSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHS 83
G G +F + ++A F P +P+K K +QP + IHR+ S
Sbjct: 107 GEGFHVTRDFFANESVDAVFINFPDPWPKKRHAKHRIVQPAFVKEIHRILKS 158
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 1 MSKLNSSIETPLSESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLINAPFALLPSSFPR 60
+S L I T L A I P+ KD + G R + S I+ F LP P
Sbjct: 69 ISWLQDQITTVLYNFATAHIFPQQKDKFAVTAVGGYGRDTLAPGSDIDLLFLFLPR--PA 126
Query: 61 KEFEKAVKIQP-VLNELIHRVAHSYSFLKETL 91
+E KAV+ VL ++ +V H+ ++E +
Sbjct: 127 EETHKAVEFMLYVLWDMGFKVGHATRTVEECI 158
>sp|Q9UZ94|DAPAL_PYRAB Uncharacterized DapA-like lyase PYRAB12600 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=dapAL PE=3 SV=1
Length = 294
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 56 SSFPRKEFEKAVKIQPVLNEL--IHRVAHSYS 85
+SF R+ FE+A+K+ VL E+ I+ VA S++
Sbjct: 218 NSFKRRNFEEAIKLSRVLGEISRIYNVASSFA 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,020,380
Number of Sequences: 539616
Number of extensions: 1106199
Number of successful extensions: 2555
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2540
Number of HSP's gapped (non-prelim): 19
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)