Query psy4343
Match_columns 93
No_of_seqs 105 out of 261
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 23:10:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03917 GSH_synth_ATP: Eukary 100.0 1.4E-29 3E-34 198.5 6.7 83 10-92 4-90 (370)
2 PLN02977 glutathione synthetas 99.9 6.9E-28 1.5E-32 193.9 9.7 84 10-93 8-96 (478)
3 cd00228 eu-GS Eukaryotic Gluta 99.9 7.9E-28 1.7E-32 193.3 9.9 84 10-93 3-87 (471)
4 KOG0021|consensus 99.9 5.9E-27 1.3E-31 185.6 8.7 84 10-93 4-88 (468)
5 TIGR01986 glut_syn_euk glutath 99.9 2.6E-26 5.7E-31 184.6 8.1 76 18-93 2-79 (472)
6 PTZ00055 glutathione synthetas 99.7 4.6E-17 9.9E-22 134.5 5.7 50 44-93 73-122 (619)
7 COG3384 Aromatic ring-opening 70.8 8.1 0.00018 29.9 4.2 64 7-75 85-162 (268)
8 PF10334 DUF2421: Protein of u 56.9 19 0.00041 26.3 3.8 36 56-91 79-120 (229)
9 KOG0173|consensus 56.3 6.1 0.00013 30.5 1.2 33 1-33 172-204 (271)
10 PRK09741 hypothetical protein; 55.9 19 0.00042 25.3 3.6 28 11-38 107-134 (148)
11 cd05526 Bromo_polybromo_VI Bro 49.9 28 0.00061 23.3 3.5 23 61-83 88-110 (110)
12 PF03127 GAT: GAT domain; Int 48.8 30 0.00066 22.0 3.4 31 61-92 45-75 (100)
13 cd01771 Faf1_UBX Faf1 UBX doma 48.7 13 0.00028 23.2 1.6 30 21-64 27-56 (80)
14 PF14542 Acetyltransf_CG: GCN5 47.8 19 0.00041 22.1 2.3 21 17-37 40-60 (78)
15 PF11372 DUF3173: Domain of un 46.1 47 0.001 20.0 3.7 30 10-39 12-41 (59)
16 PF15603 Imm45: Immunity prote 41.2 32 0.0007 21.9 2.6 25 11-35 55-79 (82)
17 PF08106 Antimicrobial11: Form 40.4 12 0.00026 16.9 0.4 12 49-60 4-15 (16)
18 smart00035 CLa CLUSTERIN alpha 40.0 42 0.00091 25.2 3.4 23 60-82 97-119 (216)
19 PF05772 NinB: NinB protein; 37.9 43 0.00093 22.9 3.0 25 11-35 101-125 (127)
20 PF12437 GSIII_N: Glutamine sy 33.4 47 0.001 24.0 2.7 24 11-34 37-60 (164)
21 TIGR01239 galT_2 galactose-1-p 30.6 1.4E+02 0.0031 25.0 5.4 20 15-34 48-67 (489)
22 PF10783 DUF2599: Protein of u 30.3 20 0.00043 23.4 0.3 36 49-86 13-48 (93)
23 PF10224 DUF2205: Predicted co 29.6 90 0.002 19.8 3.3 22 61-82 20-41 (80)
24 KOG3192|consensus 29.0 93 0.002 22.5 3.6 32 61-92 53-103 (168)
25 CHL00130 rbcS ribulose-1,5-bis 26.8 83 0.0018 22.1 2.9 25 7-35 9-33 (138)
26 PF08708 PriCT_1: Primase C te 26.6 83 0.0018 18.5 2.6 21 8-28 49-69 (71)
27 PF04036 DUF372: Domain of unk 25.6 94 0.002 17.2 2.5 18 60-77 2-19 (38)
28 PF10158 LOH1CR12: Tumour supp 25.5 1.1E+02 0.0023 21.0 3.3 38 55-92 22-59 (131)
29 PF13305 WHG: WHG domain; PDB: 25.4 24 0.00051 20.6 0.0 12 24-35 63-74 (81)
30 PF09494 Slx4: Slx4 endonuclea 25.1 77 0.0017 18.7 2.3 20 73-92 2-21 (64)
31 PF04800 ETC_C1_NDUFA4: ETC co 24.3 58 0.0013 21.5 1.7 15 21-35 58-72 (101)
32 PRK11627 hypothetical protein; 23.7 1.5E+02 0.0032 21.5 3.9 33 57-89 154-189 (192)
33 cd03527 RuBisCO_small Ribulose 23.7 1.1E+02 0.0023 20.2 2.9 25 7-35 7-31 (99)
34 KOG2564|consensus 23.1 46 0.001 26.5 1.2 14 21-34 206-219 (343)
35 PF13319 DUF4090: Protein of u 22.2 1.9E+02 0.0042 18.6 3.7 16 22-37 2-17 (84)
36 PF13431 TPR_17: Tetratricopep 21.3 45 0.00098 17.1 0.6 20 62-81 1-20 (34)
37 PF10044 Ret_tiss: Retinal tis 20.8 1.4E+02 0.003 19.6 3.0 22 12-33 58-79 (95)
38 COG3449 DNA gyrase inhibitor [ 20.7 1.3E+02 0.0028 21.4 3.0 24 13-36 21-44 (154)
39 PF01320 Colicin_Pyocin: Colic 20.3 77 0.0017 20.4 1.7 18 16-33 63-80 (85)
40 PF14246 TetR_C_7: AefR-like t 20.3 1.2E+02 0.0025 16.6 2.3 19 9-27 32-50 (55)
No 1
>PF03917 GSH_synth_ATP: Eukaryotic glutathione synthase, ATP binding domain; InterPro: IPR005615 This entry represents eukaryotic glutathione synthetase (6.3.2.3 from EC) (GSS), a homodimeric enzyme that catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to phosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis, the first step being catalysed by gamma-glutamylcysteine synthetase []. In humans, defects in GSS are inherited in an autosomal recessive way and are the cause of severe metabolic acidosis, 5-oxoprolinuria, and increased rate of haemolysis and defective function of the central nervous system. ; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 3KAJ_A 3KAL_A 3KAK_A 2WYO_A 2HGS_A 1M0W_B 1M0T_A.
Probab=99.96 E-value=1.4e-29 Score=198.55 Aligned_cols=83 Identities=47% Similarity=0.815 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccccCCCCCC-CC---ccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCChh
Q psy4343 10 TPLSESVLADIIPKAKDYALMHGAGMRSRTNFSE-DS---LINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYS 85 (93)
Q Consensus 10 ~~l~~~~~~~L~~~a~~wal~hGl~~~~~~~~~~-~~---~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~ 85 (93)
.+++++++++|+++|+|||++|||+||++....+ +. ++||||||+||||||++||+|+++|++||+||||||+|.+
T Consensus 4 ~~l~~~~l~~L~~~a~dwAl~hGl~~r~~~~~~~~~~~~~~~~aP~tL~PspfPr~~Fe~a~~lq~~~N~L~~~is~D~~ 83 (370)
T PF03917_consen 4 LPLSEEQLEELVEDAKDWALAHGLLMRPKDSPNSSDVPGVVTHAPFTLFPSPFPRSLFEQAKSLQPLFNELYDRISRDFE 83 (370)
T ss_dssp CCS-HHHHHHHHHHHHHHHHHTT-EEEETTSTTTTTCCCCEEE--EESS-EEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCeEEecCCCCccCCCccceeeccEEEecCcCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4789999999999999999999999999765432 22 6899999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy4343 86 FLKETLK 92 (93)
Q Consensus 86 fL~~~l~ 92 (93)
||.++|+
T Consensus 84 fL~~~l~ 90 (370)
T PF03917_consen 84 FLEETLK 90 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 2
>PLN02977 glutathione synthetase
Probab=99.95 E-value=6.9e-28 Score=193.86 Aligned_cols=84 Identities=35% Similarity=0.665 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccccCCCCC-----CCCccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCCh
Q psy4343 10 TPLSESVLADIIPKAKDYALMHGAGMRSRTNFS-----EDSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSY 84 (93)
Q Consensus 10 ~~l~~~~~~~L~~~a~~wal~hGl~~~~~~~~~-----~~~~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~ 84 (93)
|.|+++++++|+++|+|||++|||+|++++... +..++|||||||||||||++|++|+++|++||+|||+||+|.
T Consensus 8 p~l~~~~~~~l~~~a~~wa~~hGl~~~~~~~~~~~~~~~~~~~~aP~tL~Ptpfpr~~f~~a~~~q~~~neL~~~vs~D~ 87 (478)
T PLN02977 8 PGLTKELLQDLVEEALVWSSLHGLVVGDRSDQRSGTVPGVGLVHAPISLLPTPFPRAAFKQACELAPLFNELVDRVSRDG 87 (478)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCeEEecCccccccCCCccceEeCCEEecCCcCCHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 369999999999999999999999999975432 346889999999999999999999999999999999999999
Q ss_pred hHHHHHhcC
Q psy4343 85 SFLKETLKK 93 (93)
Q Consensus 85 ~fL~~~l~~ 93 (93)
+||+++|++
T Consensus 88 ~fL~~~l~~ 96 (478)
T PLN02977 88 EFLQETLAR 96 (478)
T ss_pred HHHHHHHHh
Confidence 999999863
No 3
>cd00228 eu-GS Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily.
Probab=99.95 E-value=7.9e-28 Score=193.25 Aligned_cols=84 Identities=36% Similarity=0.617 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccccCCCCC-CCCccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCChhHHH
Q psy4343 10 TPLSESVLADIIPKAKDYALMHGAGMRSRTNFS-EDSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLK 88 (93)
Q Consensus 10 ~~l~~~~~~~L~~~a~~wal~hGl~~~~~~~~~-~~~~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~ 88 (93)
.+++++++++|+++|+|||++|||+|++++... +..++|||||||||||||++|++|+++|++||+|||+||+|.+||+
T Consensus 3 ~~~~~~~~~~l~~~a~dwa~~hGl~~~~~~~~~~~~~~~~aP~tL~Ptpfpr~~f~~a~~~q~~~neL~~~vs~D~~fL~ 82 (471)
T cd00228 3 IPDDKDQLEELAKDANDWAVANGLVMRDKSVQESSVVASHAPFTLLPSPFPEALFEQAVEVQPDFNELVDRISQDGKFLQ 82 (471)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCeEEecCCCCCCCcceeeCCEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 347899999999999999999999999975432 4578999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q psy4343 89 ETLKK 93 (93)
Q Consensus 89 ~~l~~ 93 (93)
++|++
T Consensus 83 ~~l~~ 87 (471)
T cd00228 83 QSLSS 87 (471)
T ss_pred HHHHh
Confidence 99863
No 4
>KOG0021|consensus
Probab=99.94 E-value=5.9e-27 Score=185.56 Aligned_cols=84 Identities=38% Similarity=0.683 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccccCCCCC-CCCccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCChhHHH
Q psy4343 10 TPLSESVLADIIPKAKDYALMHGAGMRSRTNFS-EDSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLK 88 (93)
Q Consensus 10 ~~l~~~~~~~L~~~a~~wal~hGl~~~~~~~~~-~~~~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~ 88 (93)
.+++++++++|+.+|.|||++|||+|++++... +..++++|+||||||||+.+|++|++||++||+|||+||.|.+||+
T Consensus 4 ~~~e~~ql~eL~~~a~dwa~a~Glv~~~~~~~~s~~v~~~~P~tl~Ps~~P~~~f~eAv~vq~~fn~Ly~~i~~d~~fL~ 83 (468)
T KOG0021|consen 4 LPLEDEQLEELGKDARDWAFAHGLVMRESSVSKSGEVASQAPITLFPSPIPHAAFEEAVSVQPLFNELYARIAQDYAFLR 83 (468)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcceeeccccccCCcccccccCceecCCcCcHHHHHHHHhhhHHHHHHHHHHhhhHHHHH
Confidence 467799999999999999999999999964433 5578999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q psy4343 89 ETLKK 93 (93)
Q Consensus 89 ~~l~~ 93 (93)
+++++
T Consensus 84 ~~~~~ 88 (468)
T KOG0021|consen 84 DTLSS 88 (468)
T ss_pred HHHHH
Confidence 99863
No 5
>TIGR01986 glut_syn_euk glutathione synthetase, eukaryotic. This model represents the eukaryotic glutathione synthetase, which shows little resemblance to the analogous enzyme of Gram-negative bacteria (TIGR01380). In the Kinetoplastida, trypanothione replaces glutathione, but can be made from glutathione; a sequence from Leishmania is not included in the seed, is highly divergent, and therefore scores between the trusted and noise cutoffs.
Probab=99.93 E-value=2.6e-26 Score=184.57 Aligned_cols=76 Identities=37% Similarity=0.618 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhccccccCCCCC--CCCccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHhcC
Q psy4343 18 ADIIPKAKDYALMHGAGMRSRTNFS--EDSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLKETLKK 93 (93)
Q Consensus 18 ~~L~~~a~~wal~hGl~~~~~~~~~--~~~~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~~ 93 (93)
++|+++|+|||++|||+|++++... ...++|||||||||||||++|++|+++|++||+|||+||+|.+||+++|++
T Consensus 2 ~~l~~~~~dwa~~hGl~~~~~~~~~~~~~~~~~aP~tL~Psp~pr~~f~~a~~vq~~~neL~~~vS~D~~fL~~~l~~ 79 (472)
T TIGR01986 2 EELIQEANDWAIAHGVVMYPPSFEKEGPVNASVAPITLFPSPIPRACFDEAVQVQPVFNELYARISQDMAFLHKTLSS 79 (472)
T ss_pred hHHHHHHHHHHHHCCeEEecCCcCccCccceeecCEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 5899999999999999999975432 235889999999999999999999999999999999999999999999863
No 6
>PTZ00055 glutathione synthetase; Provisional
Probab=99.68 E-value=4.6e-17 Score=134.47 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=47.1
Q ss_pred CCccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHhcC
Q psy4343 44 DSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLKETLKK 93 (93)
Q Consensus 44 ~~~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~~ 93 (93)
..++|||||||||||||++|++|+++|++||+|||+||+|.+||.++|++
T Consensus 73 ~~~~~aPftL~PtpfPr~~fe~a~~vq~l~neLvd~vS~D~~fL~~~l~~ 122 (619)
T PTZ00055 73 GILKMVSFVLFPLPFPRKLLEDCCLCTLLLVELFDNMSCDLELLLDVFEQ 122 (619)
T ss_pred ceEEeCCEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999863
No 7
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=70.83 E-value=8.1 Score=29.86 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHH---------HHHHHhcc-----ccccCCCCCCCCccccceeecCCCCcHHHHHHHHHHhHH
Q psy4343 7 SIETPLSESVLADIIPKAK---------DYALMHGA-----GMRSRTNFSEDSLINAPFALLPSSFPRKEFEKAVKIQPV 72 (93)
Q Consensus 7 ~~p~~l~~~~~~~L~~~a~---------~wal~hGl-----~~~~~~~~~~~~~~haP~tL~PspfPr~~Fe~A~~vQ~~ 72 (93)
+|+.+=+++-.+.+++.+. +|-+-||- .|.|..+ .-...+|+.++.-|...|+-+..++++
T Consensus 85 ~Y~a~G~peLa~~i~~~l~~~~v~a~~~~~gLDHGtwvpL~~M~Pdad-----ipVV~iSi~~~~~~~~h~~lG~al~~l 159 (268)
T COG3384 85 KYPAPGSPELAQRIVELLAKLGVPADAPSWGLDHGTWVPLRYMFPDAD-----IPVVQISIDCTLSPADHYELGRALRKL 159 (268)
T ss_pred cCCCCCCHHHHHHHHHHhcccCccccCCccCCCccceeeehhhCCccC-----CcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 5677778887777777666 69999993 3565322 236889999999999999999999998
Q ss_pred HHH
Q psy4343 73 LNE 75 (93)
Q Consensus 73 ~N~ 75 (93)
--|
T Consensus 160 ree 162 (268)
T COG3384 160 REE 162 (268)
T ss_pred HhC
Confidence 777
No 8
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=56.87 E-value=19 Score=26.30 Aligned_cols=36 Identities=11% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHHHHhHHHHHHHHHHhC----C--hhHHHHHh
Q psy4343 56 SSFPRKEFEKAVKIQPVLNELIHRVAH----S--YSFLKETL 91 (93)
Q Consensus 56 spfPr~~Fe~A~~vQ~~~N~L~~~Is~----D--~~fL~~~l 91 (93)
.+||++.|++.++++...|.+++.++. . .+|....+
T Consensus 79 G~FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~~~~~~~~l~ 120 (229)
T PF10334_consen 79 GRFPKETYQRLLELCQNILDLLSLLSYVSTRLEPSEWRERLL 120 (229)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHH
Confidence 599999999999999999988887653 2 35666544
No 9
>KOG0173|consensus
Probab=56.31 E-value=6.1 Score=30.50 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Q psy4343 1 MSKLNSSIETPLSESVLADIIPKAKDYALMHGA 33 (93)
Q Consensus 1 ~~~~~~~~p~~l~~~~~~~L~~~a~~wal~hGl 33 (93)
|++++..|.+.|++++...|+.+|+.=-+-|-|
T Consensus 172 msvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDL 204 (271)
T KOG0173|consen 172 MSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDL 204 (271)
T ss_pred HHHHHHhcCcccCHHHHHHHHHHHHHhhhcccc
Confidence 678899999999999999999999887776655
No 10
>PRK09741 hypothetical protein; Provisional
Probab=55.91 E-value=19 Score=25.33 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccccC
Q psy4343 11 PLSESVLADIIPKAKDYALMHGAGMRSR 38 (93)
Q Consensus 11 ~l~~~~~~~L~~~a~~wal~hGl~~~~~ 38 (93)
.|+-.+...+++.+.+||..+|+-+..|
T Consensus 107 ~L~t~eMs~~ie~i~awA~~~Gi~l~~P 134 (148)
T PRK09741 107 DLDTGEMYVFLCKVEAWAMNIGCHLTIP 134 (148)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 4788889999999999999999977664
No 11
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=49.85 E-value=28 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhCC
Q psy4343 61 KEFEKAVKIQPVLNELIHRVAHS 83 (93)
Q Consensus 61 ~~Fe~A~~vQ~~~N~L~~~Is~D 83 (93)
..|+.|+.+|..|..-++.+.+|
T Consensus 88 ~iy~dA~eLq~~f~~~rd~~~~~ 110 (110)
T cd05526 88 EIYEDAVELQQFFIKIRDELCKN 110 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 67999999999999999988764
No 12
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=48.84 E-value=30 Score=22.03 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhCChhHHHHHhc
Q psy4343 61 KEFEKAVKIQPVLNELIHRVAHSYSFLKETLK 92 (93)
Q Consensus 61 ~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~ 92 (93)
++|+....+|+-..+|+..+..|. ||.+.|.
T Consensus 45 eL~~~ck~~r~~i~~li~~~~dee-~l~~lL~ 75 (100)
T PF03127_consen 45 ELYESCKSMRPRIQRLIEEVEDEE-LLGELLQ 75 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcHH-HHHHHHH
Confidence 789999999999999998877665 9988763
No 13
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=48.73 E-value=13 Score=23.21 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccccccCCCCCCCCccccceeecCCCCcHHHHH
Q psy4343 21 IPKAKDYALMHGAGMRSRTNFSEDSLINAPFALLPSSFPRKEFE 64 (93)
Q Consensus 21 ~~~a~~wal~hGl~~~~~~~~~~~~~~haP~tL~PspfPr~~Fe 64 (93)
+++..+|-.++|. .+.+|.|. |+|||+.|.
T Consensus 27 L~~l~~fv~~~~~-------------~~~~f~L~-t~fPRk~~~ 56 (80)
T cd01771 27 LQVLLNFVASKGY-------------PIDEYKLL-SSWPRRDLT 56 (80)
T ss_pred HHHHHHHHHhcCC-------------CCCCEEEe-cCCCCCCCc
Confidence 5566777766543 24578888 999999885
No 14
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=47.75 E-value=19 Score=22.09 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhcccccc
Q psy4343 17 LADIIPKAKDYALMHGAGMRS 37 (93)
Q Consensus 17 ~~~L~~~a~~wal~hGl~~~~ 37 (93)
...|++.+++||..||+-++|
T Consensus 40 a~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 40 AKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp HHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEE
Confidence 478999999999999998887
No 15
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=46.08 E-value=47 Score=20.04 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccccCC
Q psy4343 10 TPLSESVLADIIPKAKDYALMHGAGMRSRT 39 (93)
Q Consensus 10 ~~l~~~~~~~L~~~a~~wal~hGl~~~~~~ 39 (93)
..+++.+...++.+|+.+....|..++...
T Consensus 12 lGf~~~tA~~IIrqAK~~lV~~G~~~Y~nk 41 (59)
T PF11372_consen 12 LGFSESTARDIIRQAKALLVQKGFSFYNNK 41 (59)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 467888999999999999999999988753
No 16
>PF15603 Imm45: Immunity protein 45
Probab=41.23 E-value=32 Score=21.91 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcccc
Q psy4343 11 PLSESVLADIIPKAKDYALMHGAGM 35 (93)
Q Consensus 11 ~l~~~~~~~L~~~a~~wal~hGl~~ 35 (93)
++++++++.+++.+.+|-..+|+.+
T Consensus 55 ~it~~e~q~II~aI~~~~~~~~~~v 79 (82)
T PF15603_consen 55 PITIAERQKIIEAIEKYFSERGMTV 79 (82)
T ss_pred ccCHHHHHHHHHHHHHHHhcCceEE
Confidence 5999999999999999999999754
No 17
>PF08106 Antimicrobial11: Formaecin family; InterPro: IPR012514 This entry consists of the formaecin family of antimicrobial peptides isolated from the bulldog ant Myrmecia gulosa in response to bacterial infection. Formaecins are inducible peptide antibiotics and are active against growing Escherichia coli but were inactive against other Gram-negative and Gram-positive bacteria. Formaecin peptides are 16 amino acids long, are rich in proline and have N-acetylgalactosamine O-linked to a conserved threonine [].; GO: 0042381 hemolymph coagulation, 0042742 defense response to bacterium
Probab=40.43 E-value=12 Score=16.87 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=8.9
Q ss_pred cceeecCCCCcH
Q psy4343 49 APFALLPSSFPR 60 (93)
Q Consensus 49 aP~tL~PspfPr 60 (93)
-|+---|||+||
T Consensus 4 npvn~kptp~pr 15 (16)
T PF08106_consen 4 NPVNNKPTPHPR 15 (16)
T ss_pred CcccCCCCCCCC
Confidence 356667899987
No 18
>smart00035 CLa CLUSTERIN alpha chain.
Probab=39.98 E-value=42 Score=25.25 Aligned_cols=23 Identities=9% Similarity=0.375 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhC
Q psy4343 60 RKEFEKAVKIQPVLNELIHRVAH 82 (93)
Q Consensus 60 r~~Fe~A~~vQ~~~N~L~~~Is~ 82 (93)
|..|++|.++...|++.|+.|=+
T Consensus 97 r~El~eAL~LaE~ftqqYd~lL~ 119 (216)
T smart00035 97 RQELDESLQLAERFTQQYDQLLQ 119 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998865
No 19
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=37.94 E-value=43 Score=22.94 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcccc
Q psy4343 11 PLSESVLADIIPKAKDYALMHGAGM 35 (93)
Q Consensus 11 ~l~~~~~~~L~~~a~~wal~hGl~~ 35 (93)
.|+-.+..++++.+..||..||+.+
T Consensus 101 kmsv~~m~~lie~i~afga~~GV~f 125 (127)
T PF05772_consen 101 KMSVKEMSELIEYIYAFGAEHGVRF 125 (127)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT---
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCcc
Confidence 4778889999999999999999854
No 20
>PF12437 GSIII_N: Glutamine synthetase type III N terminal ; InterPro: IPR022147 This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. The family is found in association with PF00120 from PFAM. This family is the N-terminal region of glutamine synthetase type III which is one of the enzymes responsible for generation of glutamine through conversion glutamate to glutamine by the incorporation of ammonia (NH3). ; GO: 0004356 glutamate-ammonia ligase activity; PDB: 3O6X_D.
Probab=33.35 E-value=47 Score=23.98 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccc
Q psy4343 11 PLSESVLADIIPKAKDYALMHGAG 34 (93)
Q Consensus 11 ~l~~~~~~~L~~~a~~wal~hGl~ 34 (93)
.|+.+..+.++.-.++||+.+|..
T Consensus 37 ~ld~~~Ad~VA~amk~WA~~~GAT 60 (164)
T PF12437_consen 37 PLDPEIADVVAAAMKEWAIEKGAT 60 (164)
T ss_dssp ---HHHHHHHHHHHHHHHHTTT--
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCe
Confidence 466777788888999999999964
No 21
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=30.64 E-value=1.4e+02 Score=25.04 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q psy4343 15 SVLADIIPKAKDYALMHGAG 34 (93)
Q Consensus 15 ~~~~~L~~~a~~wal~hGl~ 34 (93)
....+++++.++||..||++
T Consensus 48 ~~~~~il~~l~~~A~~~g~i 67 (489)
T TIGR01239 48 QSSPDLLDQLLQWAAENGRM 67 (489)
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 34567999999999999997
No 22
>PF10783 DUF2599: Protein of unknown function (DUF2599); InterPro: IPR019719 The function of the bacterial proteins in this entry is not known.
Probab=30.27 E-value=20 Score=23.39 Aligned_cols=36 Identities=8% Similarity=0.218 Sum_probs=27.5
Q ss_pred cceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCChhH
Q psy4343 49 APFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSF 86 (93)
Q Consensus 49 aP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~f 86 (93)
..++++||+.=|....... ..+|+||+.+-..|..|
T Consensus 13 ~SL~V~Pt~~gR~~~~~~~--~~aW~ev~~~~~~d~~W 48 (93)
T PF10783_consen 13 WSLSVYPTDAGRRASDPDT--EAAWAEVLALFPDDRQW 48 (93)
T ss_pred ceEEEecchHhhcCCCchH--HHHHHHHHHhcCCcccc
Confidence 4577888887776655444 78899999998887776
No 23
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.55 E-value=90 Score=19.80 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhC
Q psy4343 61 KEFEKAVKIQPVLNELIHRVAH 82 (93)
Q Consensus 61 ~~Fe~A~~vQ~~~N~L~~~Is~ 82 (93)
.+-+++..+|..+..|.+||-.
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~ 41 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEE 41 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999854
No 24
>KOG3192|consensus
Probab=29.00 E-value=93 Score=22.55 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=23.4
Q ss_pred HHHHHHHHHhHHHHHHHHHH-------------------hCChhHHHHHhc
Q psy4343 61 KEFEKAVKIQPVLNELIHRV-------------------AHSYSFLKETLK 92 (93)
Q Consensus 61 ~~Fe~A~~vQ~~~N~L~~~I-------------------s~D~~fL~~~l~ 92 (93)
..=||--.|..+||+|=+.. +.|++||-++|.
T Consensus 53 ~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~~sne~stDpe~Lmevle 103 (168)
T KOG3192|consen 53 QASEQSAELNKAYDTLKDPLARARYLLKLKGQEQTSNELSTDPEFLMEVLE 103 (168)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCchhhhccCHHHHHHHHH
Confidence 44567778889999987764 447788877764
No 25
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=26.77 E-value=83 Score=22.12 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcccc
Q psy4343 7 SIETPLSESVLADIIPKAKDYALMHGAGM 35 (93)
Q Consensus 7 ~~p~~l~~~~~~~L~~~a~~wal~hGl~~ 35 (93)
++-|+|++++ +..=++|++.+|-..
T Consensus 9 SyLPpLTdeq----I~kQI~Y~i~~GW~p 33 (138)
T CHL00130 9 SFLPDLTDQQ----IEKQIQYAISKGWAL 33 (138)
T ss_pred ccCCCCCHHH----HHHHHHHHHhcCCeE
Confidence 3457899999 556678999999653
No 26
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=26.64 E-value=83 Score=18.46 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q psy4343 8 IETPLSESVLADIIPKAKDYA 28 (93)
Q Consensus 8 ~p~~l~~~~~~~L~~~a~~wa 28 (93)
..+||++++++.++..+..|.
T Consensus 49 ~~~PL~~~Ev~~i~kSi~k~~ 69 (71)
T PF08708_consen 49 FSPPLPESEVKAIAKSIAKWT 69 (71)
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 368999999999999998875
No 27
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=25.61 E-value=94 Score=17.23 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhHHHHHHH
Q psy4343 60 RKEFEKAVKIQPVLNELI 77 (93)
Q Consensus 60 r~~Fe~A~~vQ~~~N~L~ 77 (93)
|.+||-++.+-.+|.+.+
T Consensus 2 rA~FEaGIklGaLyHQF~ 19 (38)
T PF04036_consen 2 RAVFEAGIKLGALYHQFV 19 (38)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred chHHHhhHHHHHHHHHhc
Confidence 789999998766665544
No 28
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=25.48 E-value=1.1e+02 Score=21.03 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=31.2
Q ss_pred CCCCcHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHhc
Q psy4343 55 PSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLKETLK 92 (93)
Q Consensus 55 PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~ 92 (93)
.--=||..+.-+.++|..++.--+.|+.|.+=|.+.+|
T Consensus 22 eklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riK 59 (131)
T PF10158_consen 22 EKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIK 59 (131)
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446889999999999999999999999877766654
No 29
>PF13305 WHG: WHG domain; PDB: 1ZK8_B 3ON2_B 3CJD_B.
Probab=25.39 E-value=24 Score=20.56 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=9.4
Q ss_pred HHHHHHHhcccc
Q psy4343 24 AKDYALMHGAGM 35 (93)
Q Consensus 24 a~~wal~hGl~~ 35 (93)
..-||..||++.
T Consensus 63 ~~~wa~~HG~~~ 74 (81)
T PF13305_consen 63 LALWAAVHGLAS 74 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356999999864
No 30
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=25.09 E-value=77 Score=18.72 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=15.0
Q ss_pred HHHHHHHHhCChhHHHHHhc
Q psy4343 73 LNELIHRVAHSYSFLKETLK 92 (93)
Q Consensus 73 ~N~L~~~Is~D~~fL~~~l~ 92 (93)
|..+.+.|..|++|..++|.
T Consensus 2 ~~~lt~~I~~~p~l~ekIL~ 21 (64)
T PF09494_consen 2 FEALTKLIRSDPELYEKILM 21 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHc
Confidence 56677777788888888763
No 31
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=24.26 E-value=58 Score=21.51 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcccc
Q psy4343 21 IPKAKDYALMHGAGM 35 (93)
Q Consensus 21 ~~~a~~wal~hGl~~ 35 (93)
.++|++||-.||+..
T Consensus 58 kE~Ai~yaer~G~~Y 72 (101)
T PF04800_consen 58 KEDAIAYAERNGWDY 72 (101)
T ss_dssp HHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCeE
Confidence 689999999999854
No 32
>PRK11627 hypothetical protein; Provisional
Probab=23.70 E-value=1.5e+02 Score=21.55 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=25.2
Q ss_pred CCcHHHHHHHHHHhHHHHHHHHHHhCChh---HHHH
Q psy4343 57 SFPRKEFEKAVKIQPVLNELIHRVAHSYS---FLKE 89 (93)
Q Consensus 57 pfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~---fL~~ 89 (93)
||-.+-=+-...+-..+++++.+|..|++ ||++
T Consensus 154 ~~sa~~~~ie~~lN~~ls~vl~~i~~D~el~~fi~q 189 (192)
T PRK11627 154 AFQASNKKIADAVNSVLSDVIADMAQDTSISEFIKQ 189 (192)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 44445555567888999999999999975 7765
No 33
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=23.67 E-value=1.1e+02 Score=20.18 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=19.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcccc
Q psy4343 7 SIETPLSESVLADIIPKAKDYALMHGAGM 35 (93)
Q Consensus 7 ~~p~~l~~~~~~~L~~~a~~wal~hGl~~ 35 (93)
++-|+|++++ +.+-+++.+.+|..+
T Consensus 7 sylp~lt~~~----i~~QI~yll~qG~~~ 31 (99)
T cd03527 7 SYLPPLTDEQ----IAKQIDYIISNGWAP 31 (99)
T ss_pred ccCCCCCHHH----HHHHHHHHHhCCCEE
Confidence 4557899888 555688999999754
No 34
>KOG2564|consensus
Probab=23.09 E-value=46 Score=26.54 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhccc
Q psy4343 21 IPKAKDYALMHGAG 34 (93)
Q Consensus 21 ~~~a~~wal~hGl~ 34 (93)
+++|++|++.+|.+
T Consensus 206 i~~Ai~W~v~sg~~ 219 (343)
T KOG2564|consen 206 IEDAIEWHVRSGQL 219 (343)
T ss_pred hhhHHHHHhccccc
Confidence 78999999999986
No 35
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=22.25 E-value=1.9e+02 Score=18.57 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcccccc
Q psy4343 22 PKAKDYALMHGAGMRS 37 (93)
Q Consensus 22 ~~a~~wal~hGl~~~~ 37 (93)
.+|+|-|++.|+-+-.
T Consensus 2 ~daiD~AI~~GiDlDG 17 (84)
T PF13319_consen 2 ADAIDAAIAAGIDLDG 17 (84)
T ss_pred ccHHHHHHHhCcCCCC
Confidence 3688999999985543
No 36
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=21.29 E-value=45 Score=17.06 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q psy4343 62 EFEKAVKIQPVLNELIHRVA 81 (93)
Q Consensus 62 ~Fe~A~~vQ~~~N~L~~~Is 81 (93)
+|++|+++.|-.-+.|.+.+
T Consensus 1 ~y~kAie~~P~n~~a~~nla 20 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLA 20 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHH
Confidence 47888888887777666655
No 37
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=20.76 E-value=1.4e+02 Score=19.57 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcc
Q psy4343 12 LSESVLADIIPKAKDYALMHGA 33 (93)
Q Consensus 12 l~~~~~~~L~~~a~~wal~hGl 33 (93)
|+++++-+-+....+||+.-|+
T Consensus 58 Lt~~~L~~~Ik~L~~~aYqLGl 79 (95)
T PF10044_consen 58 LTPDQLIEKIKKLQDEAYQLGL 79 (95)
T ss_pred CCHHHHHHHHHHHHHHHHHHhH
Confidence 6777777778999999999997
No 38
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=20.72 E-value=1.3e+02 Score=21.42 Aligned_cols=24 Identities=8% Similarity=0.043 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHHhccccc
Q psy4343 13 SESVLADIIPKAKDYALMHGAGMR 36 (93)
Q Consensus 13 ~~~~~~~L~~~a~~wal~hGl~~~ 36 (93)
.+.++.+..++.+.|+.+|||.-.
T Consensus 21 ~~~~~~~~~~~l~~W~~~~~l~p~ 44 (154)
T COG3449 21 DPATLKQTFEQLIAWRRENGLLPE 44 (154)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCC
Confidence 567789999999999999999754
No 39
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=20.34 E-value=77 Score=20.37 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy4343 16 VLADIIPKAKDYALMHGA 33 (93)
Q Consensus 16 ~~~~L~~~a~~wal~hGl 33 (93)
.-+.++..++.|-.+||+
T Consensus 63 sPegIv~~vKeWRa~nG~ 80 (85)
T PF01320_consen 63 SPEGIVKEVKEWRASNGK 80 (85)
T ss_dssp SHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 356789999999999997
No 40
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=20.33 E-value=1.2e+02 Score=16.61 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=12.3
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy4343 9 ETPLSESVLADIIPKAKDY 27 (93)
Q Consensus 9 p~~l~~~~~~~L~~~a~~w 27 (93)
+++.++++.+..++++++-
T Consensus 32 ~~~~s~~e~~~~v~~aV~~ 50 (55)
T PF14246_consen 32 APPPSAEEIERIVESAVDM 50 (55)
T ss_dssp S----HHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 3566788999999998873
Done!