Query psy4343
Match_columns 93
No_of_seqs 105 out of 261
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:10:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hgs_A Protein (glutathione sy 100.0 2E-30 6.9E-35 207.2 8.5 91 3-93 1-92 (474)
2 3kal_A Homoglutathione synthet 100.0 6.7E-29 2.3E-33 199.3 8.4 83 10-92 32-119 (499)
3 1m0w_A Glutathione synthetase; 99.9 3.6E-28 1.2E-32 194.8 6.3 82 8-92 4-91 (491)
4 2wyo_A Glutathione synthetase; 99.9 4.8E-27 1.6E-31 190.5 3.2 76 14-92 15-90 (562)
5 3iu6_A Protein polybromo-1; PB 64.0 2.6 8.8E-05 28.7 1.3 27 61-87 90-116 (147)
6 1g2c_B Fusion protein (F); mem 48.3 24 0.00083 19.3 3.3 29 55-89 4-32 (43)
7 1wrd_A TOM1, target of MYB pro 47.0 27 0.00094 21.8 4.0 32 60-92 46-77 (103)
8 1pc6_A Protein NINB; structura 46.9 15 0.00053 24.5 2.9 28 11-38 103-130 (146)
9 3qx1_A FAS-associated factor 1 42.9 10 0.00035 22.4 1.4 30 21-64 30-59 (84)
10 2ibf_B Invasin IPAA, 70 kDa an 42.0 17 0.00057 17.6 1.8 20 61-80 3-22 (26)
11 1kny_A Kntase, kanamycin nucle 34.6 31 0.0011 24.3 3.1 20 17-36 227-246 (253)
12 1wr6_A ADP-ribosylation factor 34.4 23 0.00077 22.7 2.1 33 60-92 41-73 (111)
13 3n6x_A Putative glutathionylsp 32.1 50 0.0017 26.1 4.2 77 12-89 34-114 (474)
14 2kng_A Protein LSR2; DNA-bindi 30.7 32 0.0011 19.7 2.1 18 21-38 15-32 (55)
15 1naf_A ADP-ribosylation factor 29.8 58 0.002 22.1 3.7 33 60-92 94-126 (158)
16 1qys_A TOP7; alpha-beta, novel 29.0 34 0.0012 21.4 2.1 15 68-82 28-42 (106)
17 3h6z_A Polycomb protein SFMBT; 27.4 6 0.00021 31.2 -1.9 42 25-66 328-380 (447)
18 1oxz_A ADP-ribosylation factor 27.3 72 0.0025 22.1 3.9 33 60-92 110-142 (186)
19 1o3x_A ADP-ribosylation factor 25.4 58 0.002 21.5 3.0 33 60-92 85-117 (140)
20 1rbl_M Ribulose 1,5 bisphospha 24.4 76 0.0026 20.3 3.3 24 8-35 16-39 (109)
21 3zxw_B Ribulose bisphosphate c 24.1 76 0.0026 20.6 3.3 24 8-35 15-38 (118)
22 2vf1_A Capsid protein; dsRNA v 23.3 42 0.0014 26.7 2.2 39 48-86 221-261 (525)
23 3fxd_A Protein ICMQ; helix bun 22.6 1E+02 0.0036 17.6 3.3 21 11-32 4-24 (57)
24 1wgn_A UBAP1, ubiquitin associ 22.5 48 0.0016 19.5 1.9 12 21-32 47-58 (63)
25 1svd_M Ribulose bisphosphate c 22.1 89 0.0031 20.0 3.3 24 8-35 18-41 (110)
26 4e3q_A Pyruvate transaminase; 22.1 1.7E+02 0.0058 22.5 5.4 55 19-81 418-473 (473)
27 3feo_A MBT domain-containing p 21.2 9.1 0.00031 30.0 -2.0 41 25-65 314-365 (437)
28 1w1n_A Phosphatidylinositol 3- 20.9 55 0.0019 16.5 1.7 14 14-27 6-19 (33)
No 1
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET: ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Probab=99.96 E-value=2e-30 Score=207.21 Aligned_cols=91 Identities=29% Similarity=0.362 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccc-cCCCCCCCCccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHh
Q psy4343 3 KLNSSIETPLSESVLADIIPKAKDYALMHGAGMR-SRTNFSEDSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVA 81 (93)
Q Consensus 3 ~~~~~~p~~l~~~~~~~L~~~a~~wal~hGl~~~-~~~~~~~~~~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is 81 (93)
+|..+||++|+++++++|+++|+|||++||++|+ .+.++.+..++|||||||||||||++|++|+++|++||+|||+||
T Consensus 1 ~m~~~~~~~l~~~~~~~l~~~a~dwa~~hGl~~~p~~~~~~~~~~~~aP~tL~PspfPr~~f~~a~~~q~~~n~L~~~vs 80 (474)
T 2hgs_A 1 MATNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVS 80 (474)
T ss_dssp --CCSGGGGSCHHHHHHHHHHHHHHHHHTTCEEECSSCTTCCSSEEECCEESSCCEECHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCeEEeccCCCCCCCceEecCEEecCCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3668999999999999999999999999999999 455556678999999999999999999999999999999999999
Q ss_pred CChhHHHHHhcC
Q psy4343 82 HSYSFLKETLKK 93 (93)
Q Consensus 82 ~D~~fL~~~l~~ 93 (93)
+|.+||+++|++
T Consensus 81 ~D~~fL~~~l~~ 92 (474)
T 2hgs_A 81 QNAAFLEQTLSS 92 (474)
T ss_dssp HCHHHHHHHHHT
T ss_pred cCHHHHHHHHHH
Confidence 999999999864
No 2
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Probab=99.95 E-value=6.7e-29 Score=199.30 Aligned_cols=83 Identities=24% Similarity=0.504 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccccCCCCCC-----CCccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCCh
Q psy4343 10 TPLSESVLADIIPKAKDYALMHGAGMRSRTNFSE-----DSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSY 84 (93)
Q Consensus 10 ~~l~~~~~~~L~~~a~~wal~hGl~~~~~~~~~~-----~~~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~ 84 (93)
+.++++++++|+++|+|||++|||+||+++...+ ..++|||||||||||||++|++|+++|++||+|||+||+|.
T Consensus 32 ~~~~~~~~~~l~~~a~dwal~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~fe~a~~vq~~~NeL~~~vs~D~ 111 (499)
T 3kal_A 32 HRIDQKLLQNIVYDALVWSTLNCLLVGDKSVQRSGRVPGVGLVHLPLSLLPGPFPESHWKQGCELAPIFNELVDRVSLDG 111 (499)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHTTCEEECTTSTTTTTSTTSSEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCeEEecCCCccccccccccceecceEecCCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 5699999999999999999999999999754322 24689999999999999999999999999999999999999
Q ss_pred hHHHHHhc
Q psy4343 85 SFLKETLK 92 (93)
Q Consensus 85 ~fL~~~l~ 92 (93)
+||+++|+
T Consensus 112 ~fL~~~l~ 119 (499)
T 3kal_A 112 KFLQESLS 119 (499)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 99999986
No 3
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural genomics, PSI, protein structure initiative; HET: ANP 3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4 d.142.1.6 PDB: 1m0t_A*
Probab=99.94 E-value=3.6e-28 Score=194.85 Aligned_cols=82 Identities=32% Similarity=0.595 Sum_probs=75.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccccccCCCC--CCCCccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCC--
Q psy4343 8 IETPLSESVLADIIPKAKDYALMHGAGMRSRTNF--SEDSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHS-- 83 (93)
Q Consensus 8 ~p~~l~~~~~~~L~~~a~~wal~hGl~~~~~~~~--~~~~~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D-- 83 (93)
||| +++++++|+++|+|||++|||+|++ +++ ++..++|||||||||||||++|++|+++|++||+|||+||+|
T Consensus 4 ~pp--~~~~~~~l~~~a~dwa~~hGl~~~~-~~~~~~~~~~~~aP~tL~PspfPr~~f~~a~~~q~~~n~L~~~vs~D~~ 80 (491)
T 1m0w_A 4 YPP--SKDQLNELIQEVNQWAITNGLSMYP-PKFEENPSNASVSPVTIYPTPIPRKCFDEAVQIQPVFNELYARITQDMA 80 (491)
T ss_dssp --C--CHHHHHHHHHHHHHHHHHHTCEECC-TTGGGCTTEEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCC--CHHHHHHHHHHHHHHHHHCCcEEec-CCCCCCCCceEecCEEecCCcCCHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 777 8899999999999999999999998 665 556789999999999999999999999999999999999999
Q ss_pred --hhHHHHHhc
Q psy4343 84 --YSFLKETLK 92 (93)
Q Consensus 84 --~~fL~~~l~ 92 (93)
.+||+++|+
T Consensus 81 ~~~~fL~~~l~ 91 (491)
T 1m0w_A 81 QPDSYLHKTTE 91 (491)
T ss_dssp CTTSHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 999999986
No 4
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A {Trypanosoma brucei}
Probab=99.93 E-value=4.8e-27 Score=190.51 Aligned_cols=76 Identities=24% Similarity=0.366 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccceeecCCCCcHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHhc
Q psy4343 14 ESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLINAPFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLKETLK 92 (93)
Q Consensus 14 ~~~~~~L~~~a~~wal~hGl~~~~~~~~~~~~~~haP~tL~PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~ 92 (93)
+.++++++++|+|||++|||+|+++.+ ..++|||||||||||||++|++|+++|++||+|||+||+|.+||+++|+
T Consensus 15 ~~~~~~l~~~a~dwa~~hGl~~~~~~~---~~~~~aP~tL~PspfPr~~F~~a~~~q~~~NeL~~~vS~D~~fL~~~l~ 90 (562)
T 2wyo_A 15 ELGAERYAEQFAAKCHELGMVMKESAG---PGRVPVPVTLQPSMISRGEFGTLCCMQPLWNEAVDNTARNFTFLRDALQ 90 (562)
T ss_dssp HTTCCSHHHHHHHHHHHHTCEEECSSS---SCEEECCEESSCEEEEHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHTH
T ss_pred hhHHHHHHHHHHHHHHhcCcEEeecCC---CceeecceEecCCcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 445688999999999999999998643 5789999999999999999999999999999999999999999999986
No 5
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=64.02 E-value=2.6 Score=28.74 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhCChhHH
Q psy4343 61 KEFEKAVKIQPVLNELIHRVAHSYSFL 87 (93)
Q Consensus 61 ~~Fe~A~~vQ~~~N~L~~~Is~D~~fL 87 (93)
..|+.|+.+|..|.+.+++++.|.++|
T Consensus 90 ~IyeDAv~Lq~~f~~~r~eL~~~g~~~ 116 (147)
T 3iu6_A 90 EIYEDAVELQQFFIKIRDELCKNGEIL 116 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence 689999999999999999999887643
No 6
>1g2c_B Fusion protein (F); membrane fusion, pneumovirus, HRSV, viral protein; 2.30A {Human respiratory syncytial virus} SCOP: h.3.2.1
Probab=48.29 E-value=24 Score=19.26 Aligned_cols=29 Identities=24% Similarity=0.706 Sum_probs=19.2
Q ss_pred CCCCcHHHHHHHHHHhHHHHHHHHHHhCChhHHHH
Q psy4343 55 PSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFLKE 89 (93)
Q Consensus 55 PspfPr~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~ 89 (93)
|-.||...|+-|++ ...+.|-+...|+.+
T Consensus 4 Pl~FP~DqFdvai~------qV~esI~qS~~~i~~ 32 (43)
T 1g2c_B 4 PLVFPSDEFDASIS------QVNEKINQSLAFIRK 32 (43)
T ss_dssp CCCCCHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred cccCchHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 78899999998753 344455544555554
No 7
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=47.04 E-value=27 Score=21.84 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhCChhHHHHHhc
Q psy4343 60 RKEFEKAVKIQPVLNELIHRVAHSYSFLKETLK 92 (93)
Q Consensus 60 r~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~ 92 (93)
.++|++..+.|+-+-+|+..+ .|.+.|.+.|+
T Consensus 46 ~eL~~~c~~~qp~i~~li~~~-~dee~l~~lL~ 77 (103)
T 1wrd_A 46 QELNRTCRAMQQRVLELIPQI-ANEQLTEELLI 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHH
Confidence 589999999999999999965 78888888764
No 8
>1pc6_A Protein NINB; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.51A {Enterobacteria phage lambda} SCOP: d.262.1.1
Probab=46.86 E-value=15 Score=24.50 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccccC
Q psy4343 11 PLSESVLADIIPKAKDYALMHGAGMRSR 38 (93)
Q Consensus 11 ~l~~~~~~~L~~~a~~wal~hGl~~~~~ 38 (93)
.|+-.+..++++.+.+||..||+.+..+
T Consensus 103 kl~~~ems~~Ie~i~a~aae~GV~~~~p 130 (146)
T 1pc6_A 103 RMRVGEFAELLELIQAFGTERGVKWSDE 130 (146)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCccCCc
Confidence 5888899999999999999999976653
No 9
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=42.94 E-value=10 Score=22.45 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhccccccCCCCCCCCccccceeecCCCCcHHHHH
Q psy4343 21 IPKAKDYALMHGAGMRSRTNFSEDSLINAPFALLPSSFPRKEFE 64 (93)
Q Consensus 21 ~~~a~~wal~hGl~~~~~~~~~~~~~~haP~tL~PspfPr~~Fe 64 (93)
+.+..+|.-++|. . ..+|.|. ++|||+.|.
T Consensus 30 l~~v~~fv~~~~~---~----------~~~f~L~-t~fPrk~l~ 59 (84)
T 3qx1_A 30 LQIVFDFVASKGF---P----------WDEYKLL-STFPRRDVT 59 (84)
T ss_dssp HHHHHHHHHHTTC---C----------TTTEEEE-CSSSCCBGG
T ss_pred HHHHHHHHHHcCC---C----------CCCeEEE-eCCCCCCCc
Confidence 5678888888763 1 3678898 899998774
No 10
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=42.01 E-value=17 Score=17.57 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q psy4343 61 KEFEKAVKIQPVLNELIHRV 80 (93)
Q Consensus 61 ~~Fe~A~~vQ~~~N~L~~~I 80 (93)
..||+|+++..+..+...+|
T Consensus 3 aiyekakevssalskvlski 22 (26)
T 2ibf_B 3 AIYEKAKEVSSALSKVLSKI 22 (26)
T ss_dssp SHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 46999999999988877665
No 11
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=34.63 E-value=31 Score=24.30 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhccccc
Q psy4343 17 LADIIPKAKDYALMHGAGMR 36 (93)
Q Consensus 17 ~~~L~~~a~~wal~hGl~~~ 36 (93)
.+++.++..+||-.||+.+.
T Consensus 227 ~~~~~~~~~~w~~~~~~~~~ 246 (253)
T 1kny_A 227 LENFWNGIQEWTERHGYIVD 246 (253)
T ss_dssp HHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHcCEEee
Confidence 35888999999999999885
No 12
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=34.37 E-value=23 Score=22.71 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhCChhHHHHHhc
Q psy4343 60 RKEFEKAVKIQPVLNELIHRVAHSYSFLKETLK 92 (93)
Q Consensus 60 r~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~ 92 (93)
.++|+...+.||.+-+|...+..|.+-|.+.|+
T Consensus 41 ~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~ 73 (111)
T 1wr6_A 41 KELFDQCENKRRTLFKLASETEDNDNSLGDILQ 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 578899999999999999888777777777663
No 13
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=32.13 E-value=50 Score=26.10 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccceeecCCCCcHHHHHHH----HHHhHHHHHHHHHHhCChhHH
Q psy4343 12 LSESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLINAPFALLPSSFPRKEFEKA----VKIQPVLNELIHRVAHSYSFL 87 (93)
Q Consensus 12 l~~~~~~~L~~~a~~wal~hGl~~~~~~~~~~~~~~haP~tL~PspfPr~~Fe~A----~~vQ~~~N~L~~~Is~D~~fL 87 (93)
++++++....+.+...-..+|+.+..-.. ....-..-||.++|--++.+.|++. .+...++|...+.|=.+.+.|
T Consensus 34 ~~~~~l~~r~~~~~~~~~~~Gitf~vy~~-~~~~~r~~p~d~iP~ii~~~eW~~le~Gl~QR~~~Ln~~l~DiYg~q~il 112 (474)
T 3n6x_A 34 VPHQQLESKRQEAELLFRRVGITFNVYGE-DAGAERLIPFDVVPRILSASEWARLSDGAIQRVKALNMFLHDVYHDQEII 112 (474)
T ss_dssp SSTTTTSSHHHHHHHHHHHHCCCC------------CCCBCSSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEeccC-CCCCCcccccCCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHH
Confidence 45566677788888888999997654211 1112357999999999999999875 566778888888887776665
Q ss_pred HH
Q psy4343 88 KE 89 (93)
Q Consensus 88 ~~ 89 (93)
.+
T Consensus 113 ~~ 114 (474)
T 3n6x_A 113 KA 114 (474)
T ss_dssp HT
T ss_pred hc
Confidence 53
No 14
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=30.67 E-value=32 Score=19.72 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhccccccC
Q psy4343 21 IPKAKDYALMHGAGMRSR 38 (93)
Q Consensus 21 ~~~a~~wal~hGl~~~~~ 38 (93)
...+.+||..||+-+-+.
T Consensus 15 ~~aIR~WAr~nG~~VsdR 32 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTR 32 (55)
T ss_dssp HHHHHHHHHHTTCCCCSS
T ss_pred hHHHHHHHHHcCCcCCCC
Confidence 457899999999976553
No 15
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.81 E-value=58 Score=22.09 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhCChhHHHHHhc
Q psy4343 60 RKEFEKAVKIQPVLNELIHRVAHSYSFLKETLK 92 (93)
Q Consensus 60 r~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~ 92 (93)
.++|++..+.|+.+-+|+.....|.+-|.+.|+
T Consensus 94 ~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~ 126 (158)
T 1naf_A 94 KELYQRCERMRPTLFRLASDTEDNDEALAEILQ 126 (158)
T ss_dssp HHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 589999999999999999988878888888763
No 16
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=28.97 E-value=34 Score=21.41 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=12.8
Q ss_pred HHhHHHHHHHHHHhC
Q psy4343 68 KIQPVLNELIHRVAH 82 (93)
Q Consensus 68 ~vQ~~~N~L~~~Is~ 82 (93)
++|+..|+|++-|-.
T Consensus 28 elqkvlnelmdyikk 42 (106)
T 1qys_A 28 ELQKVLNELMDYIKK 42 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 689999999998753
No 17
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=27.42 E-value=6 Score=31.16 Aligned_cols=42 Identities=12% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHHHhccccccCCCCCC-----------CCccccceeecCCCCcHHHHHHH
Q psy4343 25 KDYALMHGAGMRSRTNFSE-----------DSLINAPFALLPSSFPRKEFEKA 66 (93)
Q Consensus 25 ~~wal~hGl~~~~~~~~~~-----------~~~~haP~tL~PspfPr~~Fe~A 66 (93)
+.||..||+.+.++..+.. ..+..||-.||+...|..-|+..
T Consensus 328 vGwce~ng~~L~pP~gy~~~~f~W~~yl~~~~a~~aP~~lF~~~~~~~~F~~g 380 (447)
T 3h6z_A 328 AGFCSVNNISVTPPNGYDSRTFTWEGYLSDTGAVAAGQHLFHDIIPDHGFEVG 380 (447)
T ss_dssp TTHHHHTTCCCCCCTTCCTTTCCHHHHHHHHTCCBCCGGGSCCCCCCCCCCTT
T ss_pred cchHHhcCccCCCCCCccccCCcHHHHHHhhCCCcCcHHHcCCCCCCCccccC
Confidence 4699999999888765442 14568999999987766555543
No 18
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=27.35 E-value=72 Score=22.14 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhCChhHHHHHhc
Q psy4343 60 RKEFEKAVKIQPVLNELIHRVAHSYSFLKETLK 92 (93)
Q Consensus 60 r~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~ 92 (93)
.++|++..+.|+-+-+|+.....|.+-|.+.|+
T Consensus 110 ~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~ 142 (186)
T 1oxz_A 110 KELYQRCERMRPTLFRLASDTEDNDEALAEILQ 142 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 489999999999999999988878888888763
No 19
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=25.42 E-value=58 Score=21.55 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhCChhHHHHHhc
Q psy4343 60 RKEFEKAVKIQPVLNELIHRVAHSYSFLKETLK 92 (93)
Q Consensus 60 r~~Fe~A~~vQ~~~N~L~~~Is~D~~fL~~~l~ 92 (93)
.++|++..+.|+.+-+|+.....|.+-|.+.|+
T Consensus 85 ~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~ 117 (140)
T 1o3x_A 85 KELYQRCERMRPTLFRLASDTEDNDEALAEILQ 117 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 478999999999999999888778888887763
No 20
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=24.40 E-value=76 Score=20.31 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcccc
Q psy4343 8 IETPLSESVLADIIPKAKDYALMHGAGM 35 (93)
Q Consensus 8 ~p~~l~~~~~~~L~~~a~~wal~hGl~~ 35 (93)
|-|+|++++ +..=++|++.+|...
T Consensus 16 yLP~lt~eq----I~kQI~Yll~qGw~p 39 (109)
T 1rbl_M 16 YLPPLSDRQ----IAAQIEYMIEQGFHP 39 (109)
T ss_dssp TSSCCCHHH----HHHHHHHHHHHTCEE
T ss_pred cCCCCCHHH----HHHHHHHHHHCCCEE
Confidence 457899998 455678999999754
No 21
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=24.13 E-value=76 Score=20.64 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcccc
Q psy4343 8 IETPLSESVLADIIPKAKDYALMHGAGM 35 (93)
Q Consensus 8 ~p~~l~~~~~~~L~~~a~~wal~hGl~~ 35 (93)
+-|+|++++ +..=++|++.+|-..
T Consensus 15 yLP~Lt~eq----I~kQV~yll~qGw~~ 38 (118)
T 3zxw_B 15 YLPPLSDAQ----IARQIQYAIDQGYHP 38 (118)
T ss_dssp CSCCCCHHH----HHHHHHHHHHHTCEE
T ss_pred cCCCCCHHH----HHHHHHHHHhCCCee
Confidence 457899888 555678999999754
No 22
>2vf1_A Capsid protein; dsRNA virus structure, viral protein, triacontahedron; 3.40A {Rabbit picobirnavirus}
Probab=23.25 E-value=42 Score=26.68 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=28.5
Q ss_pred ccceeecCCCCcH--HHHHHHHHHhHHHHHHHHHHhCChhH
Q psy4343 48 NAPFALLPSSFPR--KEFEKAVKIQPVLNELIHRVAHSYSF 86 (93)
Q Consensus 48 haP~tL~PspfPr--~~Fe~A~~vQ~~~N~L~~~Is~D~~f 86 (93)
..-.+|.|--.|+ .-=++..++|.+||+|++.|=-|.+|
T Consensus 221 ~sgt~lv~~~~p~~a~~~rkl~~~~~~~~~l~~~~~gd~d~ 261 (525)
T 2vf1_A 221 ESGTSLVYRDWPVGAAMPRKLNRLFTVLRELLDAIYGDADA 261 (525)
T ss_dssp SSCSEEEEEECSCTTSCCCCHHHHHHHHHHHHHHHHSCSSH
T ss_pred CCCceeeecccccccCCcHHHHHHHHHHHHHHHHHhCcchh
Confidence 3455676655554 22345789999999999999999876
No 23
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=22.56 E-value=1e+02 Score=17.64 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc
Q psy4343 11 PLSESVLADIIPKAKDYALMHG 32 (93)
Q Consensus 11 ~l~~~~~~~L~~~a~~wal~hG 32 (93)
.|+++|.+ -+-.|.|.|+.+|
T Consensus 4 ~lt~eq~~-aILkaLdeaIe~G 24 (57)
T 3fxd_A 4 QLSDEQKE-TILKALNDAIEKG 24 (57)
T ss_dssp CCCHHHHH-HHHHHHHHHHHHS
T ss_pred hhhHHHHH-HHHHHHHHHHHcC
Confidence 46777744 4557899999999
No 24
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.51 E-value=48 Score=19.48 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhc
Q psy4343 21 IPKAKDYALMHG 32 (93)
Q Consensus 21 ~~~a~~wal~hG 32 (93)
++.|.||-.+|.
T Consensus 47 vErAaDWLFSH~ 58 (63)
T 1wgn_A 47 IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC
Confidence 889999999985
No 25
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=22.15 E-value=89 Score=20.01 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcccc
Q psy4343 8 IETPLSESVLADIIPKAKDYALMHGAGM 35 (93)
Q Consensus 8 ~p~~l~~~~~~~L~~~a~~wal~hGl~~ 35 (93)
+-|+|++++ +..=++|++.+|...
T Consensus 18 yLP~lt~eq----I~kQV~Yll~qGw~p 41 (110)
T 1svd_M 18 YLPPMNAER----IRAQIKYAIAQGWSP 41 (110)
T ss_dssp TSCCCCHHH----HHHHHHHHHHTTCEE
T ss_pred cCCCCCHHH----HHHHHHHHHHCCCee
Confidence 347899998 455678999999754
No 26
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=22.08 E-value=1.7e+02 Score=22.48 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCCCccccceeecCCCCcHHHHHHHHH-HhHHHHHHHHHHh
Q psy4343 19 DIIPKAKDYALMHGAGMRSRTNFSEDSLINAPFALLPSSFPRKEFEKAVK-IQPVLNELIHRVA 81 (93)
Q Consensus 19 ~L~~~a~~wal~hGl~~~~~~~~~~~~~~haP~tL~PspfPr~~Fe~A~~-vQ~~~N~L~~~Is 81 (93)
.+.......++.+||.+++-. .....+| |--+.++.-+++++ +...++++++.||
T Consensus 418 ~~~~~~~~~~~~~Gll~~~~g----~~i~l~P----PL~it~~eid~~~~~l~~al~~v~aelA 473 (473)
T 4e3q_A 418 SVSERIANTCTDLGLICRPLG----QSVVLCP----PFILTEAQMDEMFDKLEKALDKVFAEVA 473 (473)
T ss_dssp CHHHHHHHHHHHTTEECEEET----TEEEECC----CTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCcEEEecC----CEEEEeC----CCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455667788999999998742 2222222 45578888877754 4566677766654
No 27
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=21.16 E-value=9.1 Score=29.99 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=28.0
Q ss_pred HHHHHHhccccccCCCCCCC-----------CccccceeecCCCCcHHHHHH
Q psy4343 25 KDYALMHGAGMRSRTNFSED-----------SLINAPFALLPSSFPRKEFEK 65 (93)
Q Consensus 25 ~~wal~hGl~~~~~~~~~~~-----------~~~haP~tL~PspfPr~~Fe~ 65 (93)
+-||..||..+.++..+... .+..||-.||....|..-|+.
T Consensus 314 VGwc~~ng~~L~pP~g~~~~~f~W~~yL~~t~~~~aP~~lF~~~~~~~~F~~ 365 (437)
T 3feo_A 314 VGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNHGFRV 365 (437)
T ss_dssp TTHHHHHTCCEECCTTCCSSSCCHHHHHHHHTCCBCCGGGGCCCCCCCCCCT
T ss_pred chhHhhcCccccCCCCcccCcchHHHHHHhhCCccCCHHHcCCCCccccCcc
Confidence 35999999998887654321 345688888887655544543
No 28
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=20.86 E-value=55 Score=16.50 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy4343 14 ESVLADIIPKAKDY 27 (93)
Q Consensus 14 ~~~~~~L~~~a~~w 27 (93)
+++.+.|+.+|.+-
T Consensus 6 ~~QV~~LI~~At~~ 19 (33)
T 1w1n_A 6 PEQVDKLIQQATSI 19 (33)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCH
Confidence 46789999999874
Done!