RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4343
(93 letters)
>gnl|CDD|238140 cd00228, eu-GS, Eukaryotic Glutathione Synthetase (eu-GS);
catalyses the production of glutathione from
gamma-glutamylcysteine and glycine in an ATP-dependent
manner. Belongs to the ATP-grasp superfamily.
Length = 471
Score = 76.6 bits (189), Expect = 5e-18
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 11 PLSESVLADIIPKAKDYALMHGAGMRSRTN-FSEDSLINAPFALLPSSFPRKEFEKAVKI 69
P + L ++ A D+A+ +G MR ++ S +APF LLPS FP FE+AV++
Sbjct: 4 PDDKDQLEELAKDANDWAVANGLVMRDKSVQESSVVASHAPFTLLPSPFPEALFEQAVEV 63
Query: 70 QPVLNELIHRVAHSYSFLKETLK 92
QP NEL+ R++ FL+++L
Sbjct: 64 QPDFNELVDRISQDGKFLQQSLS 86
>gnl|CDD|217791 pfam03917, GSH_synth_ATP, Eukaryotic glutathione synthase, ATP
binding domain.
Length = 468
Score = 75.9 bits (187), Expect = 8e-18
Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 11 PLSESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLIN-APFALLPSSFPRKEFEKAVKI 69
P+ + L ++ A D+AL++G M ++ + APF LLPS FP FE+AV++
Sbjct: 5 PIDKKQLEELAYDALDWALLNGLLMGDKSVQKSGEVPGVAPFTLLPSPFPEAHFEQAVEV 64
Query: 70 QPVLNELIHRVAHSYSFLKETLKK 93
QP+ NEL+ R++ +FL+++L +
Sbjct: 65 QPLFNELVDRISQDAAFLQQSLSR 88
>gnl|CDD|215528 PLN02977, PLN02977, glutathione synthetase.
Length = 478
Score = 63.5 bits (155), Expect = 2e-13
Identities = 31/96 (32%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 4 LNSSIETP-LSESVLADIIPKAKDYALMHGAGMRSRTNFSEDS-----LINAPFALLPSS 57
I+ P L++ +L D++ +A ++ +HG + R++ + L++AP +LLP+
Sbjct: 1 EAPIIDVPGLTKELLQDLVEEALVWSSLHGLVVGDRSDQRSGTVPGVGLVHAPISLLPTP 60
Query: 58 FPRKEFEKAVKIQPVLNELIHRVAHSYSFLKETLKK 93
FPR F++A ++ P+ NEL+ RV+ FL+ETL +
Sbjct: 61 FPRAAFKQACELAPLFNELVDRVSRDGEFLQETLAR 96
>gnl|CDD|233670 TIGR01986, glut_syn_euk, glutathione synthetase, eukaryotic.
This model represents the eukaryotic glutathione
synthetase, which shows little resemblance to the
analogous enzyme of Gram-negative bacteria (TIGR01380).
In the Kinetoplastida, trypanothione replaces
glutathione, but can be made from glutathione; a
sequence from Leishmania is not included in the seed,
is highly divergent, and therefore scores between the
trusted and noise cutoffs.
Length = 472
Score = 63.3 bits (154), Expect = 2e-13
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 17 LADIIPKAKDYALMHGAGMR--SRTNFSEDSLINAPFALLPSSFPRKEFEKAVKIQPVLN 74
L ++I +A D+A+ HG M S + AP L PS PR F++AV++QPV N
Sbjct: 1 LEELIQEANDWAIAHGVVMYPPSFEKEGPVNASVAPITLFPSPIPRACFDEAVQVQPVFN 60
Query: 75 ELIHRVAHSYSFLKETL 91
EL R++ +FL +TL
Sbjct: 61 ELYARISQDMAFLHKTL 77
>gnl|CDD|217478 pfam03294, Pox_Rap94, RNA polymerase-associated transcription
specificity factor, Rap94.
Length = 796
Score = 29.3 bits (66), Expect = 0.21
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 14 ESVLADIIPKAKDYALMHGAGMRSRTNF 41
ESVL +IIPK K Y +S +F
Sbjct: 5 ESVLIEIIPKIKAYIKDPNIDPKSYDDF 32
>gnl|CDD|240247 PTZ00055, PTZ00055, glutathione synthetase; Provisional.
Length = 619
Score = 28.2 bits (63), Expect = 0.48
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 50 PFALLPSSFPRKEFEKAVKIQPVLNELIHRVAHSYSFL 87
F L P FPRK E +L EL ++ L
Sbjct: 79 SFVLFPLPFPRKLLEDCCLCTLLLVELFDNMSCDLELL 116
>gnl|CDD|237846 PRK14876, PRK14876, conjugal transfer mating pair stabilization
protein TraN; Provisional.
Length = 928
Score = 26.8 bits (59), Expect = 1.8
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 1 MSKLNSSIETPL-SESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLIN 48
M + +S + L S++ A+ Y ++ + RSR +FS D ++N
Sbjct: 124 MDDVGNSAKGSLWSDANSANPSISGAAYKVLLDSSNRSRPDFSNDPVLN 172
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 26.8 bits (59), Expect = 2.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 61 KEFEKAVKIQPVLNELIHRVAHSYSFLKETLKK 93
++AVK+ P + + + + SY L TLK+
Sbjct: 394 AHLDRAVKLLPSIKQFLSQPLSSYCALHNTLKQ 426
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 467
Score = 25.7 bits (57), Expect = 4.5
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 22/64 (34%)
Query: 16 VLADIIPKAKDYALMHGAGMRSRTNFSEDSLINAPFALLPSSFPRKEFEKAVKIQPVLNE 75
VL D PK KD+ GA +LI P+ KEFE+AV E
Sbjct: 174 VLVD--PKGKDFEKYRGA-----------TLIT------PN---LKEFEEAVGKCKSEEE 211
Query: 76 LIHR 79
L R
Sbjct: 212 LEER 215
>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase;
Provisional.
Length = 409
Score = 25.1 bits (56), Expect = 6.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 6 SSIET---PLSESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLINAP 50
++IE L E L + I A H G+RSRT +E+ L A
Sbjct: 33 TNIEYHKGALDEEELIEAIKDA------HFIGIRSRTQLTEEVLAAAE 74
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 24.8 bits (55), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 4 LNSSIETPLSESVLADIIPKA 24
L S ETPL +LA+ +A
Sbjct: 170 LKPSPETPLDAYLLAEAAEEA 190
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.354
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,603,242
Number of extensions: 372410
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 21
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)