RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4343
(93 letters)
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural
genomics, PSI, protein structure initiative; HET: ANP
3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4
d.142.1.6 PDB: 1m0t_A*
Length = 491
Score = 100 bits (249), Expect = 1e-26
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 9 ETPLSESVLADIIPKAKDYALMHGAGMRSR-TNFSEDSLINAPFALLPSSFPRKEFEKAV 67
P S+ L ++I + +A+ +G M + + +P + P+ PRK F++AV
Sbjct: 3 HYPPSKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASVSPVTIYPTPIPRKCFDEAV 62
Query: 68 KIQPVLNELIHRVAHSYSFLKETLKK 93
+IQPV NEL R+ + L K
Sbjct: 63 QIQPVFNELYARITQDMAQPDSYLHK 88
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET:
ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Length = 474
Score = 97.4 bits (242), Expect = 1e-25
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 10 TPLSESVLADIIPKAKDYALMHGAGMRSR-TNFSEDSLINAPFALLPSSFPRKEFEKAVK 68
+ L ++ +A D AL G +R+ S + + APF L PS P E+A
Sbjct: 8 LLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYA 67
Query: 69 IQPVLNELIHRVAHSYSFLKETLKK 93
+Q N L+ V+ + +FL++TL
Sbjct: 68 VQMDFNLLVDAVSQNAAFLEQTLSS 92
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS;
1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Length = 499
Score = 96.7 bits (240), Expect = 2e-25
Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 11 PLSESVLADIIPKAKDYALMHGAGMRSRTNFSED-----SLINAPFALLPSSFPRKEFEK 65
+ + +L +I+ A ++ ++ + ++ L++ P +LLP FP +++
Sbjct: 33 RIDQKLLQNIVYDALVWSTLNCLLVGDKSVQRSGRVPGVGLVHLPLSLLPGPFPESHWKQ 92
Query: 66 AVKIQPVLNELIHRVAHSYSFLKETLKK 93
++ P+ NEL+ RV+ FL+E+L +
Sbjct: 93 GCELAPIFNELVDRVSLDGKFLQESLSR 120
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A
{Trypanosoma brucei}
Length = 562
Score = 84.6 bits (208), Expect = 5e-21
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 12 LSESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLINAPFALLPSSFPRKEFEKAVKIQP 71
L E + G M + + + P L PS R EF +QP
Sbjct: 13 LLELGAERYAEQFAAKCHELG--MVMKESAGPGR-VPVPVTLQPSMISRGEFGTLCCMQP 69
Query: 72 VLNELIHRVAHSYSFLKETLKK 93
+ NE + A +++FL++ L++
Sbjct: 70 LWNEAVDNTARNFTFLRDALQE 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.069
Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 49/116 (42%)
Query: 10 TPLSESVLADIIPKAKDYALMHGAG----MRS--------------RTN--FSED----- 44
T L S+L D +L + G M S +TN
Sbjct: 317 TSLPPSILED--------SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 45 SLINAPFALLPSSFPR------KEFEKAVKIQPVLNELIHRVAHS-------YSFL 87
SL+N L+ S P+ K K L++ R+ S FL
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRK-AKAPSGLDQ--SRIPFSERKLKFSNRFL 421
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 26.4 bits (59), Expect = 1.2
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 8 IETPLSESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLINAP 50
+ L ++ L I H G+RSRT +E+ A
Sbjct: 43 LPKALDKADLIKAI---SSA---HIIGIRSRTQLTEEIFAAAN 79
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A*
2p9e_A* 2pa3_A* 2p9g_A*
Length = 404
Score = 26.4 bits (59), Expect = 1.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 8 IETPLSESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLINAP 50
+ L + L + I +D H G+RSRT+ +ED + A
Sbjct: 32 HKGALDDEQLKESI---RDA---HFIGLRSRTHLTEDVINAAE 68
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 25.3 bits (56), Expect = 2.9
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 9 ETPLSESVLADIIPKAKDY-ALMHGAGMRSRTNFSEDSLINAP 50
T LA + D AL+ +R RT + L P
Sbjct: 34 NTVKGVGQLAARV---ADVEALV---LIRERTRVTRQLLDRLP 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 2.9
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 1 MSKLNSSIE--TPLSESVLA 18
+ KL +S++ S LA
Sbjct: 22 LKKLQASLKLYADDSAPALA 41
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase,
structural genomics; 1.60A {Bartonella henselae}
Length = 393
Score = 25.6 bits (57), Expect = 3.0
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 11 PLSESVLADIIPKAKDYALMHGAGMR-----SRT 39
P + +VLAD + M G + +R+
Sbjct: 180 PQAAAVLADAGLPGNELLFMQGFEPQQDWFITRS 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.354
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,284,841
Number of extensions: 62438
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 12
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)