RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4343
         (93 letters)



>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
          synthetase ATP-binding domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 370

 Score = 97.6 bits (243), Expect = 2e-26
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 6  SSIETPLS-ESVLADIIPKAKDYALMHGAGMRSRTN-FSEDSLINAPFALLPSSFPRKEF 63
          ++  + L  +  L ++  +A D AL  G  +R+     S + +  APF L PS  P    
Sbjct: 1  TNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALL 60

Query: 64 EKAVKIQPVLNELIHRVAHSYSFLKETLKK 93
          E+A  +Q   N L+  V+ + +FL++TL  
Sbjct: 61 EQAYAVQMDFNLLVDAVSQNAAFLEQTLSS 90


>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
          synthetase ATP-binding domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 373

 Score = 96.4 bits (240), Expect = 5e-26
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 13 SESVLADIIPKAKDYALMHGAGMR-SRTNFSEDSLINAPFALLPSSFPRKEFEKAVKIQP 71
          S+  L ++I +   +A+ +G  M   +   +  +   +P  + P+  PRK F++AV+IQP
Sbjct: 2  SKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASVSPVTIYPTPIPRKCFDEAVQIQP 61

Query: 72 VLNELIHRVAHSYSFLKETLKK 93
          V NEL  R+    +     L K
Sbjct: 62 VFNELYARITQDMAQPDSYLHK 83


>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 348

 Score = 25.0 bits (53), Expect = 1.5
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 1   MSK-LNSSIETPLSESVLADIIPKAKDYALMHGAGMRSRTNFSEDSLINA 49
           MSK L + +  P +  +L      A  Y L+        T  SE++L   
Sbjct: 298 MSKTLGNVV-DPFA--LLEKYGRDALRYYLLREIPYGQDTPVSEEALRTR 344


>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
           (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
          Length = 361

 Score = 23.8 bits (50), Expect = 4.7
 Identities = 4/22 (18%), Positives = 6/22 (27%)

Query: 27  YALMHGAGMRSRTNFSEDSLIN 48
           Y L         ++FS      
Sbjct: 334 YYLTTIMPETRDSDFSFSDFKV 355


>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre
          {Thermochromatium tepidum [TaxId: 1050]}
          Length = 201

 Score = 23.2 bits (50), Expect = 5.4
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 21 IPKAKDYALMHGAGMRS 37
          +P  K + L H  G   
Sbjct: 3  LPDPKTFVLPHNGGTVV 19


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,196
Number of extensions: 11238
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 6
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)