BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4344
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HGS|A Chain A, Human Glutathione Synthetase
Length = 474
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 18 ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
AL + ++ER+++ILMEKI P N L+R G+ + + +SELGI+GV +
Sbjct: 382 ALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCISELGIFGVYV 433
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 20 LSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
L AG++E +A+ILM++I P L+R G ++SE GI+G +
Sbjct: 410 LQEAGSQEDAAYILMQRIFPATSPAILVRDG-NWDTGHVISEAGIFGTYL 458
>pdb|1M0T|A Chain A, Yeast Glutathione Synthase
pdb|1M0T|B Chain B, Yeast Glutathione Synthase
pdb|1M0W|A Chain A, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
pdb|1M0W|B Chain B, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
Length = 491
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 22 MAGNKER--SAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
+ G +ER A+ILME I P + N +I + I+SELGIYG V+
Sbjct: 401 LKGIEERHWDAYILMELIEPELNENNIILRDNKSYNEPIISELGIYGCVL 450
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 1 MLRSKASTANEGGVAGG 17
+LRSK +T+NEGGVA G
Sbjct: 465 LLRSKFNTSNEGGVAAG 481
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 35 EKIIPPVQSNYLIRAGAEVKCLD 57
EK+ Q NYLI+ G E+ C D
Sbjct: 815 EKVSVLCQENYLIQEGEEITCKD 837
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 35 EKIIPPVQSNYLIRAGAEVKCLD 57
EK+ Q NYLI+ G E+ C D
Sbjct: 815 EKVSVLCQENYLIQEGEEITCKD 837
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 7 STANEGGVAGGALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLD 57
+T + G+ L GN ERSA++ E+ + V+ R E+K ++
Sbjct: 381 NTVQQDGIMTKDLALACGNNERSAYVTTEEFLDAVEK----RLQKEIKSIE 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,884,510
Number of Sequences: 62578
Number of extensions: 52871
Number of successful extensions: 99
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 9
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)