BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4344
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48637|GSHB_HUMAN Glutathione synthetase OS=Homo sapiens GN=GSS PE=1 SV=1
Length = 474
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 18 ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
AL + ++ER+++ILMEKI P N L+R G+ + + +SELGI+GV +
Sbjct: 382 ALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCISELGIFGVYV 433
>sp|P35668|GSHB_XENLA Glutathione synthetase OS=Xenopus laevis GN=gss PE=2 SV=1
Length = 474
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 25 NKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
++ER+++ILM+KI P N L+RAG V+ + +SELG++GV +
Sbjct: 389 SEERTSYILMDKINPKPLKNCLLRAGGRVQISECISELGMFGVYV 433
>sp|Q5EAC2|GSHB_BOVIN Glutathione synthetase OS=Bos taurus GN=GSS PE=2 SV=1
Length = 474
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 18 ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
AL + ++ER+++ILMEKI P N L+R G+ + + +SELGI+GV +
Sbjct: 382 ALERLKDSEERASYILMEKIEPEPFRNCLLRPGSPARVIQCISELGIFGVYV 433
>sp|P46413|GSHB_RAT Glutathione synthetase OS=Rattus norvegicus GN=Gss PE=1 SV=1
Length = 474
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 18 ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
AL + ++ER+++ILMEKI P N L+R G+ + + +SELGI+GV +
Sbjct: 382 ALEQLKDSEERASYILMEKIEPEPFRNCLLRPGSPAQVVQCISELGIFGVYV 433
>sp|P51855|GSHB_MOUSE Glutathione synthetase OS=Mus musculus GN=Gss PE=2 SV=1
Length = 474
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 18 ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
AL + ++ER+++ILMEKI P N L+R G+ + + +SELGI+GV +
Sbjct: 382 ALEQLKDSEERASYILMEKIEPEPFRNCLLRPGSPAQVVQCISELGIFGVYV 433
>sp|Q8HXX5|GSHB_MACFA Glutathione synthetase OS=Macaca fascicularis GN=GSS PE=2 SV=1
Length = 474
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 18 ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
AL + ++ER+++ILMEK P N L+R G+ + + +SELGI+GV +
Sbjct: 382 ALKQLKDSEERASYILMEKTEPEPFENCLLRPGSPAQVVQCISELGIFGVYV 433
>sp|O23732|GSHB_BRAJU Glutathione synthetase, chloroplastic OS=Brassica juncea GN=GSH2
PE=2 SV=1
Length = 530
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 20 LSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
L G +E +A+ILM++I P V + +L+R G K +SELG+YG +
Sbjct: 441 LQREGEEENAAYILMQRIFPKVSNVFLLRDGVYHKD-QAISELGVYGAYL 489
>sp|O22494|GSHB_SOLLC Glutathione synthetase, chloroplastic OS=Solanum lycopersicum
GN=GSH2 PE=2 SV=1
Length = 546
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 17 GALLSMA--GNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
GALL + G +A+ILM++I P + + L+R G K + +SELGIYG +
Sbjct: 452 GALLKLQKEGTGSDAAYILMQRIFPKISHSILMREGISHK-EETISELGIYGTYL 505
>sp|P46416|GSHB_ARATH Glutathione synthetase, chloroplastic OS=Arabidopsis thaliana
GN=GSH2 PE=2 SV=3
Length = 539
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 20 LSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
L G + +A+ILM++I P V + +L+R G K +SELG+YG +
Sbjct: 450 LQKEGEEGNAAYILMQRIFPKVSNMFLVREGVYHK-HQAISELGVYGAYL 498
>sp|Q08220|GSHB_YEAST Glutathione synthetase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GSH2 PE=1 SV=1
Length = 491
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 22 MAGNKER--SAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
+ G +ER A+ILME I P + N +I + I+SELGIYG V+
Sbjct: 401 LKGIEERHWDAYILMELIEPELNENNIILRDNKSYNEPIISELGIYGCVL 450
>sp|P35669|GSHB_SCHPO Glutathione synthetase large chain OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=gsa1 PE=1 SV=2
Length = 498
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 18 ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
LLS +E ++ILM I NY+++ G + D+V E+GI G ++
Sbjct: 404 GLLSKMPQEEWDSYILMRYINAVPSQNYILK-GERPEKFDVVDEIGILGTIV 454
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,449,522
Number of Sequences: 539616
Number of extensions: 717961
Number of successful extensions: 1518
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 22
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)