Query psy4344
Match_columns 70
No_of_seqs 102 out of 268
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:11:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kal_A Homoglutathione synthet 99.9 5.6E-27 1.9E-31 178.8 5.9 67 3-70 391-459 (499)
2 2hgs_A Protein (glutathione sy 99.9 7.4E-27 2.5E-31 177.2 5.8 68 3-70 367-434 (474)
3 1m0w_A Glutathione synthetase; 99.9 9.4E-27 3.2E-31 177.2 6.1 66 3-70 385-451 (491)
4 2wyo_A Glutathione synthetase; 99.9 6.3E-26 2.2E-30 174.8 1.8 68 3-70 438-512 (562)
5 2fcg_F Cationic, antibacterial 31.8 32 0.0011 16.3 1.9 14 12-25 9-22 (26)
6 3qe5_A Antigen I/II, major cel 23.8 64 0.0022 24.9 3.2 33 16-48 465-499 (516)
7 3opu_A SPAP; cell adhesion; 2. 22.6 47 0.0016 24.3 2.2 32 16-47 289-322 (339)
8 1oef_A Apolipoprotein E; glyco 20.9 34 0.0012 15.5 0.8 12 11-22 6-17 (26)
9 3lax_A Phenylacetate-coenzyme 19.7 54 0.0018 18.4 1.7 19 6-24 10-28 (109)
10 2kt5_B ICP27; chaperone, mRNA 19.6 40 0.0014 17.4 1.0 10 35-44 27-36 (40)
No 1
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Probab=99.93 E-value=5.6e-27 Score=178.79 Aligned_cols=67 Identities=28% Similarity=0.494 Sum_probs=60.0
Q ss_pred ccCCCCCcchhHHHHHHhhccCC--ccccceeeecCCCCCCcceeEEecCcccccCCeeeeecceeeeeC
Q psy4344 3 RSKASTANEGGVAGGALLSMAGN--KERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70 (70)
Q Consensus 3 ~~~~~nNiyG~dI~~~L~~l~~~--~er~aYILM~rI~Pp~~~n~lvR~g~~~~~~~~vSELGIfG~~l~ 70 (70)
|.-|||||||+||+++|++|+++ +||+||||||||+||+++|++||+| .+...++||||||||++|+
T Consensus 391 REGGGNNiYg~dI~~~L~~l~~~~~~e~~ayILMerI~Pp~~~n~lvR~g-~~~~~~~iSELGIfG~~l~ 459 (499)
T 3kal_A 391 REGGGNNIYGDELRETLLKLQEAGSQEDAAYILMQRIFPATSPAILVRDG-NWDTGHVISEAGIFGTYLR 459 (499)
T ss_dssp CCSSSCCBCHHHHHHHHHHCCC-----GGGCEEEECCCCCCEEEEEEETT-EEEEEEEEEEEEEEEEEEE
T ss_pred ccCCccccchHHHHHHHHhcCccchhhHHHHHHHhhcCCCCCCeEEEECC-ccccCCeeeeccceEEEEe
Confidence 56799999999999999999764 5899999999999999999999999 5778999999999999984
No 2
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET: ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Probab=99.93 E-value=7.4e-27 Score=177.19 Aligned_cols=68 Identities=35% Similarity=0.547 Sum_probs=62.3
Q ss_pred ccCCCCCcchhHHHHHHhhccCCccccceeeecCCCCCCcceeEEecCcccccCCeeeeecceeeeeC
Q psy4344 3 RSKASTANEGGVAGGALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70 (70)
Q Consensus 3 ~~~~~nNiyG~dI~~~L~~l~~~~er~aYILM~rI~Pp~~~n~lvR~g~~~~~~~~vSELGIfG~~l~ 70 (70)
|.-|||||||+||+++|++++++++|+||||||||+||+++|++||+|..+...++||||||||++|+
T Consensus 367 REGGGNNiYg~dI~~~L~~l~~~e~~~ayILMerI~Pp~~~~~~vR~g~~~~~~~~iSELGIfg~~l~ 434 (474)
T 2hgs_A 367 REGGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCISELGIFGVYVR 434 (474)
T ss_dssp CCSSSCCBCHHHHHHHHHHHTTSGGGGGEEEEECCCCCCEEEEEECTTSCCEEEEEEEEEEEEEEEEE
T ss_pred ccCCccccchHHHHHHHHhcCCcccceeeeeeecccCCCCCeEEEECCccccccceeeccceeEEEEE
Confidence 56799999999999999999887349999999999999999999999954788999999999999984
No 3
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural genomics, PSI, protein structure initiative; HET: ANP 3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4 d.142.1.6 PDB: 1m0t_A*
Probab=99.93 E-value=9.4e-27 Score=177.19 Aligned_cols=66 Identities=30% Similarity=0.388 Sum_probs=61.8
Q ss_pred ccCCCCCcchhHHHHHHhhccCCccccceeeecCCCCCCc-ceeEEecCcccccCCeeeeecceeeeeC
Q psy4344 3 RSKASTANEGGVAGGALLSMAGNKERSAWILMEKIIPPVQ-SNYLIRAGAEVKCLDIVSELGIYGVVIG 70 (70)
Q Consensus 3 ~~~~~nNiyG~dI~~~L~~l~~~~er~aYILM~rI~Pp~~-~n~lvR~g~~~~~~~~vSELGIfG~~l~ 70 (70)
|.-|||||||+||+++|++|+++ ||+||||||||+||++ +|++||+| .+...++||||||||++|+
T Consensus 385 REGGGNNiYg~dI~~~L~~l~~~-e~~ayILMerI~Pp~~~~~~~vR~g-~~~~~~~iSELGIfG~~l~ 451 (491)
T 1m0w_A 385 REGGGNNVYKENIPNFLKGIEER-HWDAYILMELIEPELNENNIILRDN-KSYNEPIISELGIYGCVLF 451 (491)
T ss_dssp SCSSCCCEEGGGHHHHHHTSCGG-GGGGEEEEECCCCCCBCSCCEEETT-EEECCCBEEEEEEEEEEEE
T ss_pred ccCCcccccHHHHHHHHHhcCHh-hcceeeeeecccCCCCCCeEEEECC-ccccCCeeecccceEEEEE
Confidence 56799999999999999999877 9999999999999998 99999999 5888999999999999984
No 4
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A {Trypanosoma brucei}
Probab=99.91 E-value=6.3e-26 Score=174.84 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=53.7
Q ss_pred ccCCCCCcchhHHHHHHhhccCCc------cccceeeecCCCCCCcceeEEecCcc-cccCCeeeeecceeeeeC
Q psy4344 3 RSKASTANEGGVAGGALLSMAGNK------ERSAWILMEKIIPPVQSNYLIRAGAE-VKCLDIVSELGIYGVVIG 70 (70)
Q Consensus 3 ~~~~~nNiyG~dI~~~L~~l~~~~------er~aYILM~rI~Pp~~~n~lvR~g~~-~~~~~~vSELGIfG~~l~ 70 (70)
|.-|||||||+||+++|+++++++ ||+|||||+||+||+++|++||+|.. +...++||||||||++|+
T Consensus 438 REGGGNNiyG~dI~~~L~~l~~~~~~~~~~e~~ayILMerI~Pp~~~~~~vR~g~~~~~~~~~iSELGIfG~~l~ 512 (562)
T 2wyo_A 438 LEGGGNLLSGETMVKALKATKEGDPVTYSKVRCEYVVMSRIQFHVSTGSLLARGDVVQLERNMCSEVGIFGVILS 512 (562)
T ss_dssp SCCCSSHHHHHHCC------------CTTTTTSSCEEECCCCBCCEEEEEEETTEEEEEEEEEEEEEEEEEEEEE
T ss_pred ccCCccccchHHHHHHHHhcCCccccccccccceeEEEecccCCCCCeEEEECCccccccCCeeeecceeEEEEE
Confidence 567999999999999999998753 89999999999999999999999953 778999999999999984
No 5
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=31.84 E-value=32 Score=16.27 Aligned_cols=14 Identities=7% Similarity=-0.142 Sum_probs=11.7
Q ss_pred hhHHHHHHhhccCC
Q psy4344 12 GGVAGGALLSMAGN 25 (70)
Q Consensus 12 G~dI~~~L~~l~~~ 25 (70)
|+.|.+|+.++.+.
T Consensus 9 gQkIkdFf~~l~pr 22 (26)
T 2fcg_F 9 VQRIKDFLRNLVPR 22 (26)
T ss_dssp HHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhcCcc
Confidence 67899999998775
No 6
>3qe5_A Antigen I/II, major cell-surface adhesin PAC; DE-variant immunoglobulin-like fold, IGG-like fold, adherenc human tooth, salivary agglutinin; HET: GLC; 2.50A {Streptococcus mutans}
Probab=23.78 E-value=64 Score=24.87 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=24.3
Q ss_pred HHHHhhccCC--ccccceeeecCCCCCCcceeEEe
Q psy4344 16 GGALLSMAGN--KERSAWILMEKIIPPVQSNYLIR 48 (70)
Q Consensus 16 ~~~L~~l~~~--~er~aYILM~rI~Pp~~~n~lvR 48 (70)
..||+++..+ -++.+||=|+||.+-.+.|..+-
T Consensus 465 ~~fL~~vs~~s~f~a~~yiq~kRIa~G~veNtf~~ 499 (516)
T 3qe5_A 465 EAFLRSVSIDSAFQAESYIQMKRIAVGTFENTYIN 499 (516)
T ss_dssp HHHHHTBCTTSCBCEEEEEEEEECSSSCCCCEEEE
T ss_pred HHHHHhhccccccCceEEEEEEEEeccceeeEEEE
Confidence 3588877532 36789999999998767776653
No 7
>3opu_A SPAP; cell adhesion; 2.18A {Streptococcus mutans}
Probab=22.65 E-value=47 Score=24.27 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=22.9
Q ss_pred HHHHhhccCC--ccccceeeecCCCCCCcceeEE
Q psy4344 16 GGALLSMAGN--KERSAWILMEKIIPPVQSNYLI 47 (70)
Q Consensus 16 ~~~L~~l~~~--~er~aYILM~rI~Pp~~~n~lv 47 (70)
..||+++..+ -++.+||=|+||.+-.+.|..+
T Consensus 289 ~dfL~~vs~ds~f~a~~yiq~kRIa~G~veNtf~ 322 (339)
T 3opu_A 289 EAFLRSVSIDSAFQAESYIQMKRIAVGTFENTYI 322 (339)
T ss_dssp HHHHHHBCTTSCBCEEEEEEEEECSSSEEEECEE
T ss_pred HHHHHhhccccccCceEEEEEEEEeccceeeEEE
Confidence 4578877532 2678999999999876665544
No 8
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=20.92 E-value=34 Score=15.51 Aligned_cols=12 Identities=0% Similarity=-0.313 Sum_probs=9.4
Q ss_pred chhHHHHHHhhc
Q psy4344 11 EGGVAGGALLSM 22 (70)
Q Consensus 11 yG~dI~~~L~~l 22 (70)
|+++|++.|..+
T Consensus 6 ~~e~ik~q~~~i 17 (26)
T 1oef_A 6 LVEDMQRQWAGL 17 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 678888888765
No 9
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=19.69 E-value=54 Score=18.45 Aligned_cols=19 Identities=11% Similarity=-0.164 Sum_probs=16.5
Q ss_pred CCCCcchhHHHHHHhhccC
Q psy4344 6 ASTANEGGVAGGALLSMAG 24 (70)
Q Consensus 6 ~~nNiyG~dI~~~L~~l~~ 24 (70)
+|.|+|=.||.+.|.+.+.
T Consensus 10 ~G~nv~P~eIE~vl~~~p~ 28 (109)
T 3lax_A 10 KGVNIFPIQIETILLQFKE 28 (109)
T ss_dssp TTEEECHHHHHHHHHTCTT
T ss_pred CCEEECHHHHHHHHHhCCC
Confidence 5789999999999998754
No 10
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=19.61 E-value=40 Score=17.37 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=6.8
Q ss_pred cCCCCCCcce
Q psy4344 35 EKIIPPVQSN 44 (70)
Q Consensus 35 ~rI~Pp~~~n 44 (70)
-||+||+.++
T Consensus 27 AR~qpp~tka 36 (40)
T 2kt5_B 27 ARLQPPPTKA 36 (40)
T ss_dssp CCCCCCCCCC
T ss_pred eeecCCCcCC
Confidence 4699987543
Done!