RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4344
(70 letters)
>gnl|CDD|238140 cd00228, eu-GS, Eukaryotic Glutathione Synthetase (eu-GS);
catalyses the production of glutathione from
gamma-glutamylcysteine and glycine in an ATP-dependent
manner. Belongs to the ATP-grasp superfamily.
Length = 471
Score = 60.1 bits (146), Expect = 1e-12
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 17 GALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70
ALL + G++ER+A+ILMEKI P NYL+RAG +SELGIYG +
Sbjct: 378 EALLKLQGSEERAAYILMEKIFPEPSENYLLRAGGPSHKEQAISELGIYGTYLR 431
Score = 30.8 bits (70), Expect = 0.026
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 1 MLRSKASTANEGGVAGG 17
+LR+K ++ EGGVA G
Sbjct: 445 LLRTKPISSAEGGVAAG 461
>gnl|CDD|217791 pfam03917, GSH_synth_ATP, Eukaryotic glutathione synthase, ATP
binding domain.
Length = 468
Score = 52.0 bits (125), Expect = 1e-09
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 17 GALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70
ALL + ++ER+A+ILME+I P N L+R G K +SELGIYG +
Sbjct: 377 EALLKLQKSEERAAYILMERIFPKPSENILLRGGPSHK-EQAISELGIYGTYLR 429
Score = 31.2 bits (71), Expect = 0.020
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 1 MLRSKASTANEGGVAGG 17
+LR+K S+++EGGVA G
Sbjct: 443 LLRTKPSSSDEGGVAAG 459
>gnl|CDD|215528 PLN02977, PLN02977, glutathione synthetase.
Length = 478
Score = 51.6 bits (124), Expect = 1e-09
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 24 GNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYG 66
G ++ +A+ILM++I PPV YL+R G + + +SELGIYG
Sbjct: 393 GGEDLAAYILMQRIFPPVSRTYLVRNG-VCEEGETISELGIYG 434
Score = 30.8 bits (70), Expect = 0.033
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 1 MLRSKASTANEGGVAGG 17
+LR+KA++++EGGVA G
Sbjct: 452 LLRTKAASSDEGGVAAG 468
>gnl|CDD|233670 TIGR01986, glut_syn_euk, glutathione synthetase, eukaryotic. This
model represents the eukaryotic glutathione synthetase,
which shows little resemblance to the analogous enzyme
of Gram-negative bacteria (TIGR01380). In the
Kinetoplastida, trypanothione replaces glutathione, but
can be made from glutathione; a sequence from Leishmania
is not included in the seed, is highly divergent, and
therefore scores between the trusted and noise cutoffs.
Length = 472
Score = 49.1 bits (117), Expect = 1e-08
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 19 LLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVI 69
L +E ++ILME I P N ++R G K I+SELGIYG +
Sbjct: 383 FLKGLEEEEWDSYILMELIEPEPSENIILRDGKSYK-EQIISELGIYGCYV 432
Score = 29.0 bits (65), Expect = 0.12
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 1 MLRSKASTANEGGVAGG 17
+LR+K +T+NEGGVA G
Sbjct: 447 LLRTKFNTSNEGGVAAG 463
>gnl|CDD|240247 PTZ00055, PTZ00055, glutathione synthetase; Provisional.
Length = 619
Score = 31.3 bits (71), Expect = 0.018
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 25 NKER-SAWILMEKIIPPVQSNYLIR----AGAEVKCLDIVSELGIYG 66
NKE+ S ++LM+KI PP Q +R E + ++ELG+Y
Sbjct: 529 NKEKLSQYVLMQKIFPPSQPAVFVRNLKSGSFEFSPENSLTELGLYH 575
>gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional.
Length = 445
Score = 27.0 bits (61), Expect = 0.74
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 5 KASTANEGGVAGGALLSMAGNKERSAW 31
KA AN GGVA L M+ N R +W
Sbjct: 367 KA--ANAGGVATSG-LEMSQNASRLSW 390
>gnl|CDD|132310 TIGR03266, methan_mark_1, putative methanogenesis marker protein 1.
Members of this protein family represent a distinct
clade among the larger set of proteins that belong to
families TIGR00702 and pfam02624. Proteins from this
clade are found in genome sequence if and only if the
species sequenced is one of the methanogens. All
methanogens belong to the archaea; some but not all of
those sequenced are hyperthermophiles. This protein
family was detected by the method of partial
phylogenetic profiling (see Haft, et al., 2006).
Length = 376
Score = 27.0 bits (60), Expect = 0.76
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 27 ERSAWILME-------KIIPPVQSNYLI-------RAGAEVKCLDIVSELGIYGV 67
ER AW L E +I ++ YL AG +VK D+ S+ GI V
Sbjct: 175 ERDAWSLAEASRNLGPEINVTAENGYLYELLEKFKDAGVDVKLRDLTSDTGIPTV 229
>gnl|CDD|171510 PRK12452, PRK12452, cardiolipin synthetase; Reviewed.
Length = 509
Score = 25.7 bits (56), Expect = 1.9
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 18 ALLSMAGNKERSAWILMEKIIPPVQSNYLIR----AGAEVKCL 56
LL++ G+ ++S WI IP ++ L+R +G +V+ L
Sbjct: 348 TLLAVMGSAKKSIWIATPYFIPDQETLTLLRLSAISGIDVRIL 390
>gnl|CDD|131701 TIGR02653, Lon_rel_chp, conserved hypothetical protein. This model
describes a protein family of unknown function, about
690 residues in length, in which some members show
C-terminal sequence similarity to pfam05362, which is
the Lon protease C-terminal proteolytic domain, from
MEROPS family S16. However, the annotated catalytic
sites of E. coli Lon protease are not conserved in
members of this family. Members have a motif
GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif
GxxGxGK[ST] [Hypothetical proteins, Conserved].
Length = 675
Score = 24.4 bits (53), Expect = 5.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 28 RSAWILMEKIIPPVQSNY 45
R+ W L+ ++IP V++NY
Sbjct: 200 RTKWHLLTRLIPLVENNY 217
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.381
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,496,152
Number of extensions: 262479
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 13
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)