RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4344
         (70 letters)



>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET:
           ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
          Length = 474

 Score = 70.5 bits (172), Expect = 2e-16
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 18  ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70
           AL  +  ++ER+++ILMEKI P    N L+R G+  + +  +SELGI+GV + 
Sbjct: 382 ALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCISELGIFGVYVR 434



 Score = 34.7 bits (79), Expect = 0.001
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 1   MLRSKASTANEGGVAGG 17
           +LR+KA    +GGVA G
Sbjct: 448 LLRTKAIEHADGGVAAG 464


>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural
           genomics, PSI, protein structure initiative; HET: ANP
           3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4
           d.142.1.6 PDB: 1m0t_A*
          Length = 491

 Score = 60.5 bits (146), Expect = 7e-13
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 18  ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70
             L     +   A+ILME I P +  N +I    +     I+SELGIYG V+ 
Sbjct: 399 NFLKGIEERHWDAYILMELIEPELNENNIILRDNKSYNEPIISELGIYGCVLF 451



 Score = 34.3 bits (78), Expect = 0.001
 Identities = 12/17 (70%), Positives = 15/17 (88%)

Query: 1   MLRSKASTANEGGVAGG 17
           +LRSK +T+NEGGVA G
Sbjct: 465 LLRSKFNTSNEGGVAAG 481


>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS;
           1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
          Length = 499

 Score = 57.4 bits (138), Expect = 7e-12
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 20  LSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70
           L  AG++E +A+ILM++I P      L+R G       ++SE GI+G  + 
Sbjct: 410 LQEAGSQEDAAYILMQRIFPATSPAILVRDG-NWDTGHVISEAGIFGTYLR 459



 Score = 33.9 bits (77), Expect = 0.001
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 1   MLRSKASTANEGGVAGG 17
           M+R+K S++ EGGV  G
Sbjct: 473 MVRTKISSSYEGGVLPG 489


>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A
           {Trypanosoma brucei}
          Length = 562

 Score = 56.5 bits (135), Expect = 2e-11
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 21  SMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCL-DIVSELGIYGVVIG 70
            +  +K R  +++M +I   V +  L+  G  V+   ++ SE+GI+GV++ 
Sbjct: 462 PVTYSKVRCEYVVMSRIQFHVSTGSLLARGDVVQLERNMCSEVGIFGVILS 512



 Score = 34.9 bits (79), Expect = 7e-04
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 1   MLRSKASTANEGGVAGG 17
            +RSK + A++GGV  G
Sbjct: 535 TVRSKPADADDGGVMAG 551


>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
           protein ST initiative; 2.50A {Enterococcus faecium}
          Length = 587

 Score = 25.8 bits (57), Expect = 1.1
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 6   ASTANEGGVAGGALLSMAGNKERSAWILMEKI 37
           AST NE  +    LL    +    A++L   +
Sbjct: 399 ASTTNENILTE-YLLETEKDPRVRAYVLNHYL 429


>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
           {Escherichia coli} PDB: 3sbo_A 2yfg_E
          Length = 447

 Score = 24.9 bits (55), Expect = 2.1
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 5   KASTANEGGVAGGALLSMAGNKERSAW 31
           KA  AN GGVA    L MA N  R  W
Sbjct: 370 KA--ANAGGVATSG-LEMAQNAARLGW 393


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,038,602
Number of extensions: 48865
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 10
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)