RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4344
         (70 letters)



>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
           synthetase ATP-binding domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 370

 Score = 71.8 bits (176), Expect = 2e-17
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 18  ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70
           AL  +  ++ER+++ILMEKI P    N L+R G+  + +  +SELGI+GV + 
Sbjct: 278 ALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCISELGIFGVYVR 330



 Score = 33.2 bits (76), Expect = 9e-04
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 1   MLRSKASTANEGGVAGG 17
           +LR+KA    +GGVA G
Sbjct: 344 LLRTKAIEHADGGVAAG 360


>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
           synthetase ATP-binding domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 373

 Score = 68.3 bits (167), Expect = 3e-16
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 18  ALLSMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70
            L  +   +   A+ILME I P +  N +I    +     I+SELGIYG V+ 
Sbjct: 282 FLKGI-EERHWDAYILMELIEPELNENNIILRDNKSYNEPIISELGIYGCVLF 333



 Score = 33.7 bits (77), Expect = 7e-04
 Identities = 12/17 (70%), Positives = 15/17 (88%)

Query: 1   MLRSKASTANEGGVAGG 17
           +LRSK +T+NEGGVA G
Sbjct: 347 LLRSKFNTSNEGGVAAG 363


>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 285

 Score = 24.2 bits (51), Expect = 1.5
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 44  NYLIRAGAEVKCLDIV 59
             L + GA   C D+V
Sbjct: 270 ELLCKRGASTDCGDLV 285


>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
          {Escherichia coli [TaxId: 562]}
          Length = 796

 Score = 23.5 bits (50), Expect = 2.6
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 23 AGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGI 64
            N+    +I ME +I  +  N L+  G      D +    I
Sbjct: 55 VANQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDI 96


>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 824

 Score = 22.7 bits (48), Expect = 5.6
 Identities = 7/42 (16%), Positives = 18/42 (42%)

Query: 23  AGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGI 64
             + +R  ++ +E  +     N ++    E  C +   +LG+
Sbjct: 65  EKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGL 106


>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
           carboxamide ribotite isomerase HisA {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 239

 Score = 22.6 bits (47), Expect = 6.7
 Identities = 6/50 (12%), Positives = 21/50 (42%)

Query: 21  SMAGNKERSAWILMEKIIPPVQSNYLIRAGAEVKCLDIVSELGIYGVVIG 70
           ++ G        +      PV ++  + +  +++ +  +   G+ G ++G
Sbjct: 172 TLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVG 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 240,379
Number of extensions: 8447
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 9
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)