BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4345
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 94/135 (69%), Gaps = 4/135 (2%)
Query: 7 DGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEG 66
DG ++V+YFRAGYTP Y S+ EW ARLLME+S+AIKCP+I YHL G KK+QQ LAK G
Sbjct: 285 DGQAISVVYFRAGYTPKDYPSESEWRARLLMEQSSAIKCPTISYHLVGTKKIQQELAKPG 344
Query: 67 TLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYG 126
LE+F+ + + I ++ F GLWSL E V+ A+++P +V+KPQREGGGNNIYG
Sbjct: 345 VLERFVENKDHIAKLRACFAGLWSL----EDSDIVKKAIENPELFVMKPQREGGGNNIYG 400
Query: 127 DLIPEVGHMLRSKAS 141
D + E L+ S
Sbjct: 401 DELRETLLKLQEAGS 415
>pdb|2HGS|A Chain A, Human Glutathione Synthetase
Length = 474
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 83/124 (66%), Gaps = 2/124 (1%)
Query: 5 YRDGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAK 64
+ DG +AV+YFR GY P Y Q W+ARLL+ERS A KCP I LAG KKVQQ L++
Sbjct: 255 FVDGQEIAVVYFRDGYMPRQYSLQ-NWEARLLLERSHAAKCPDIATQLAGTKKVQQELSR 313
Query: 65 EGTLEKFL-SDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNN 123
G LE L P + ++ F GL+SLD +EGD A+ AL P ++VLKPQREGGGNN
Sbjct: 314 PGMLEMLLPGQPEAVARLRATFAGLYSLDVGEEGDQAIAEALAAPSRFVLKPQREGGGNN 373
Query: 124 IYGD 127
+YG+
Sbjct: 374 LYGE 377
>pdb|1M0T|A Chain A, Yeast Glutathione Synthase
pdb|1M0T|B Chain B, Yeast Glutathione Synthase
pdb|1M0W|A Chain A, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
pdb|1M0W|B Chain B, Yeast Glutathione Synthase Bound To
Gamma-Glutamyl-Cysteine, Amp-Pnp And 2 Magnesium Ions
Length = 491
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 81/120 (67%)
Query: 11 VAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEK 70
+AV+Y+R GYT Y S+ +W+ARL +E+S AIK P + L+G+KK+QQ L EG L K
Sbjct: 279 IAVVYYRTGYTTTDYTSEKDWEARLFLEKSFAIKAPDLLTQLSGSKKIQQLLTDEGVLGK 338
Query: 71 FLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIP 130
++SD + ++ + F ++ LD K G +AL +P KYVLKPQREGGGNN+Y + IP
Sbjct: 339 YISDAEKKSSLLKTFVKIYPLDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIP 398
>pdb|2WYO|A Chain A, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|B Chain B, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|C Chain C, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|D Chain D, Trypanosoma Brucei Glutathione Synthetase
Length = 562
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 10 PVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTL- 68
P+AV YFR+ Y P+ + + W ARL +ERS+AIKCPSI YHL KK+QQ L +
Sbjct: 324 PIAVAYFRSTYVPEDFPTDATWAARLSLERSSAIKCPSIPYHLLTFKKLQQLLCDVDRVL 383
Query: 69 --EKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKD----PGKYVLKPQREGGGN 122
F D ++ ++ F +SL+ + G+ AVE + D P ++VLKPQ EGGGN
Sbjct: 384 VPVAFCGDSDKAGLLQRHFVPQYSLNPKEVGEEAVEKVIHDVLQRPDQFVLKPQLEGGGN 443
Query: 123 NIYGDLI 129
+ G+ +
Sbjct: 444 LLSGETM 450
>pdb|4GEE|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4GFN|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic
pdb|4GGL|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HXW|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 215
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 57 KVQQALAKEGTLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYV-LKP 115
KV + + GT F+ DP EIFT D+DK E+A + G ++ ++
Sbjct: 140 KVIEETDRHGTTVHFIPDP-------EIFTETTVYDFDKLATRVRELAFLNRGLHISIED 192
Query: 116 QREG 119
+REG
Sbjct: 193 RREG 196
>pdb|3S9I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With 2-4-dioxo-4-phenylbutanoic Acid
Inhibitor
pdb|3S9Z|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-mehtylphenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(3-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SB0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-chloro-6-fluoro-3-methylphenyl)-2,4-dioxobutanoic
Acid Inhibitor
Length = 741
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 41 TAIKCPSIHYHLAGAKKVQQALA--KEGTLEKFLSDP 75
TA ++HYH VQQ LA + T+E+ L+ P
Sbjct: 546 TAATLHALHYHQVDVAAVQQGLAGKRRATIEQLLTIP 582
>pdb|2GQ3|A Chain A, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
pdb|2GQ3|B Chain B, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
Length = 729
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 41 TAIKCPSIHYHLAGAKKVQQALA--KEGTLEKFLSDP 75
TA ++HYH VQQ LA + T+E+ L+ P
Sbjct: 548 TAATLHALHYHQVDVAAVQQGLAGKRRATIEQLLTIP 584
>pdb|1N8I|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|B Chain B, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
Length = 741
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 41 TAIKCPSIHYHLAGAKKVQQALA--KEGTLEKFLSDP 75
TA ++HYH VQQ LA + T+E+ L+ P
Sbjct: 546 TAATLHALHYHQVDVAAVQQGLAGKRRATIEQLLTIP 582
>pdb|2GES|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Rt)
pdb|2GET|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Lt)
pdb|2GEU|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Rt)
pdb|2GEV|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Lt)
Length = 312
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 33 ARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAV 81
+R L R+TA P H+H A QA+ + + ++ PN ++ +
Sbjct: 237 SRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENI 285
>pdb|3AVO|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenate
pdb|3AVQ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With N9-Pan
Length = 322
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 33 ARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAV 81
+R L R+TA P H+H A QA+ + + ++ PN ++ +
Sbjct: 247 SRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENI 295
>pdb|4GE1|A Chain A, Structure Of The Tryptamine Complex Of The Amine Binding
Protein Of Rhodnius Prolixus
pdb|4GE1|B Chain B, Structure Of The Tryptamine Complex Of The Amine Binding
Protein Of Rhodnius Prolixus
pdb|4GE1|C Chain C, Structure Of The Tryptamine Complex Of The Amine Binding
Protein Of Rhodnius Prolixus
pdb|4GE1|D Chain D, Structure Of The Tryptamine Complex Of The Amine Binding
Protein Of Rhodnius Prolixus
pdb|4GET|A Chain A, Crystal Structure Of Biogenic Amine Binding Protein From
Rhodnius Prolixus
pdb|4GET|B Chain B, Crystal Structure Of Biogenic Amine Binding Protein From
Rhodnius Prolixus
pdb|4GET|C Chain C, Crystal Structure Of Biogenic Amine Binding Protein From
Rhodnius Prolixus
pdb|4GET|D Chain D, Crystal Structure Of Biogenic Amine Binding Protein From
Rhodnius Prolixus
Length = 197
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 84 IFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIP 130
FTG W + + K GD+ +E+ K+ K++ + +G ++ + P
Sbjct: 19 FFTGSWYITHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNP 65
>pdb|2ZS7|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Citrate Anion
pdb|2ZS8|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Co- Crystallized With Adp
pdb|2ZS9|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Pantothenate
pdb|2ZSA|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Phosphopantothenate
pdb|2ZSB|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Adp, Obtained Through Soaking
Of Native Enzyme Crystals With The Ligand
pdb|2ZSD|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Coenzyme A
pdb|2ZSE|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Amppcp And Pantothenate
pdb|2ZSF|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Atp And Adp
pdb|3AEZ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Phosphopantothenate
pdb|3AF0|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Pantothenate
pdb|3AF1|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp
pdb|3AF2|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Amppcp
pdb|3AF3|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp And Pantothenate
pdb|3AF4|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp
pdb|3AVP|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenol
Length = 312
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 33 ARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAV 81
+R L R+TA P H+H A QA+ + + ++ PN ++ +
Sbjct: 237 SRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENI 285
>pdb|4HFO|A Chain A, Biogenic Amine-binding Protein Selenomethionine Derivative
pdb|4HFO|B Chain B, Biogenic Amine-binding Protein Selenomethionine Derivative
pdb|4HFO|C Chain C, Biogenic Amine-binding Protein Selenomethionine Derivative
pdb|4HFO|D Chain D, Biogenic Amine-binding Protein Selenomethionine Derivative
pdb|4HFO|I Chain I, Biogenic Amine-binding Protein Selenomethionine Derivative
pdb|4HFO|J Chain J, Biogenic Amine-binding Protein Selenomethionine Derivative
pdb|4HFO|K Chain K, Biogenic Amine-binding Protein Selenomethionine Derivative
pdb|4HFO|L Chain L, Biogenic Amine-binding Protein Selenomethionine Derivative
Length = 195
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 84 IFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIP 130
FTG W + K GD+ +E+ K+ K++ + +G ++ + P
Sbjct: 17 FFTGSWYXTHYKLGDSTLEVGDKNCTKFLHQKTADGKIKEVFSNYNP 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,008,173
Number of Sequences: 62578
Number of extensions: 193757
Number of successful extensions: 521
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 21
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)