Query psy4345
Match_columns 161
No_of_seqs 119 out of 284
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 23:12:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00228 eu-GS Eukaryotic Gluta 100.0 2.2E-75 4.7E-80 527.4 11.6 158 4-161 251-471 (471)
2 TIGR01986 glut_syn_euk glutath 100.0 8.9E-75 1.9E-79 523.7 11.6 157 4-160 253-472 (472)
3 PLN02977 glutathione synthetas 100.0 2.3E-74 5.1E-79 521.5 11.9 158 3-161 257-478 (478)
4 PTZ00055 glutathione synthetas 100.0 1.7E-67 3.8E-72 487.1 11.3 152 9-161 387-619 (619)
5 KOG0021|consensus 100.0 1.8E-64 3.8E-69 449.2 11.2 158 4-161 250-468 (468)
6 PF03917 GSH_synth_ATP: Eukary 100.0 1.3E-48 2.9E-53 344.6 3.3 107 54-160 202-370 (370)
7 PF03199 GSH_synthase: Eukaryo 99.9 2.4E-27 5.2E-32 178.0 3.6 51 3-53 53-105 (105)
8 KOG0021|consensus 97.4 0.00018 3.8E-09 65.9 4.2 57 9-65 258-314 (468)
9 PF14403 CP_ATPgrasp_2: Circul 95.2 0.039 8.4E-07 50.9 5.5 121 4-130 231-361 (445)
10 cd07922 CarBa CarBa is the A s 55.8 8.5 0.00019 27.9 1.8 22 55-76 7-28 (81)
11 cd07321 Extradiol_Dioxygenase_ 51.8 12 0.00025 26.5 2.0 22 55-76 6-27 (77)
12 PF06462 Hyd_WA: Propeller; I 44.5 11 0.00024 22.4 0.7 19 13-32 11-29 (32)
13 COG2232 Predicted ATP-dependen 41.4 44 0.00096 30.7 4.4 44 8-51 48-92 (389)
14 PF09249 tRNA_NucTransf2: tRNA 41.4 7 0.00015 30.2 -0.5 15 121-135 12-29 (114)
15 PRK12458 glutathione synthetas 40.2 72 0.0016 27.9 5.5 54 9-64 78-138 (338)
16 KOG0393|consensus 31.7 13 0.00027 31.1 -0.5 27 44-72 106-132 (198)
17 PF01228 Gly_radical: Glycine 26.8 29 0.00063 25.8 0.7 34 78-111 58-91 (106)
18 PRK10507 bifunctional glutathi 24.7 2.1E+02 0.0046 27.8 6.3 109 7-128 431-549 (619)
19 PF11502 BCL9: B-cell lymphoma 24.0 56 0.0012 21.0 1.5 13 51-63 13-25 (40)
20 PF05029 TIMELESS_C: Timeless 23.7 78 0.0017 30.2 3.1 27 43-69 9-35 (566)
21 PF12537 DUF3735: Protein of u 23.3 16 0.00035 25.3 -1.2 13 147-159 22-34 (72)
22 PF02955 GSH-S_ATP: Prokaryoti 21.2 42 0.00091 27.1 0.7 28 99-126 22-49 (173)
23 PF13973 DUF4222: Domain of un 21.1 1E+02 0.0023 20.3 2.5 17 11-27 25-41 (53)
24 PHA02087 hypothetical protein 20.4 43 0.00093 24.2 0.5 15 114-128 59-73 (83)
No 1
>cd00228 eu-GS Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily.
Probab=100.00 E-value=2.2e-75 Score=527.44 Aligned_cols=158 Identities=58% Similarity=0.999 Sum_probs=153.9
Q ss_pred CCcCCceEEEEEeccCCCCCCCCCHHHHHHHHHhhHhccccCCchHHHhhhhHHHHHHhcChhhhhhccCCHHHHHHHHH
Q psy4345 4 NYRDGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAVKE 83 (161)
Q Consensus 4 ~~~~~~eVsvvYfRagY~P~dY~se~~W~~R~~lE~S~AIKcPsi~~qLag~KKvQq~L~~p~~L~~fl~~~~~~~~ir~ 83 (161)
|++++.|||||||||||+|+|||++++|++|++||+|+|||||||++||||||||||+|++|++|+||++++++++.||+
T Consensus 251 L~~~~~eVavvYfRaGY~P~dY~se~~W~aRl~lE~S~AIKcPsi~~qLaGtKKVQQ~La~p~vLerfl~~~~~~~~lr~ 330 (471)
T cd00228 251 LFVDGQEVAVVYFRAGYTPDDYPSESEWEARLLMERSSAIKCPSISTQLAGTKKIQQELAEPGVLERFLPNPEEVAKLRA 330 (471)
T ss_pred EEEcCeEEEEEEEecccChhhCCCHHHHHHHHHHHhcCcccCCCHHHHhcccHHHHHHhcCchHHHHhcCCHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HhcccccCCCChhhhHHHHHhhcCCCCceecCCCCCCcccccCCCcC---------------------------------
Q psy4345 84 IFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIP--------------------------------- 130 (161)
Q Consensus 84 ~F~~~~~Ld~~~~g~~~v~~a~~~p~~yVLKPQrEGGGnniyg~~I~--------------------------------- 130 (161)
||++||+||.++++.+++++|+++|++||||||||||||||||+||+
T Consensus 331 tFa~~y~Ld~~~~~~~~~~~a~~~p~~~VLKPQrEGGGNNiYg~dI~~~L~~l~~~~e~~ayILMerI~P~~~~~~~vR~ 410 (471)
T cd00228 331 TFAGLYSLDDTEEGDEIVRKALEKPELFVLKPQREGGGNNIYGEEMREALLKLQGSEERAAYILMEKIFPEPSENYLLRA 410 (471)
T ss_pred HhcccccCCCccccchHHHHhhhChhheEEcCcCcCcccccchHHHHHHHHhcCChhhhceeeeeeccCCCCCceEEEEc
Confidence 99999999998788899999999999999999999999999999997
Q ss_pred ------------------------------ccceeeeecCCCCCCCcceeccccccccccC
Q psy4345 131 ------------------------------EVGHMLRSKASTANEGGVAGGAGALDSPYLI 161 (161)
Q Consensus 131 ------------------------------~~G~LlRTK~~~s~EGGVaaG~~~lDS~~L~ 161 (161)
++|||||||++++|||||||||||||||+||
T Consensus 411 g~~~~~~~~iSELGIfG~~l~~~~~v~~N~~~GyLlRTK~~~s~EGGVaaG~g~lDS~~L~ 471 (471)
T cd00228 411 GGPSHKEQAISELGIYGTYLRNKDEVVMNKQSGHLLRTKPISSAEGGVAAGFAVLDSIYLV 471 (471)
T ss_pred CCccccCCceeeccceEEEEeCCCeEEeccceeEEEEcCCCCCCCCCeeeceeeccceeeC
Confidence 7899999999999999999999999999996
No 2
>TIGR01986 glut_syn_euk glutathione synthetase, eukaryotic. This model represents the eukaryotic glutathione synthetase, which shows little resemblance to the analogous enzyme of Gram-negative bacteria (TIGR01380). In the Kinetoplastida, trypanothione replaces glutathione, but can be made from glutathione; a sequence from Leishmania is not included in the seed, is highly divergent, and therefore scores between the trusted and noise cutoffs.
Probab=100.00 E-value=8.9e-75 Score=523.66 Aligned_cols=157 Identities=54% Similarity=0.955 Sum_probs=152.4
Q ss_pred CCcC--CceEEEEEeccCCCCCCCCCHHHHHHHHHhhHhccccCCchHHHhhhhHHHHHHhcChhhhhhccCCHHHHHHH
Q psy4345 4 NYRD--GSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAV 81 (161)
Q Consensus 4 ~~~~--~~eVsvvYfRagY~P~dY~se~~W~~R~~lE~S~AIKcPsi~~qLag~KKvQq~L~~p~~L~~fl~~~~~~~~i 81 (161)
|+++ +.|||||||||||+|+|||++++|++|++||+|+|||||||++||||+|||||+|++|++|+||++++++++.|
T Consensus 253 L~~~~~~~eVavvYfRaGY~P~dY~s~~~W~aRl~lE~S~AIKcPsi~~qLaGtKKVQq~La~p~vLerfl~~~~~~~~l 332 (472)
T TIGR01986 253 LFVRDTGQEIAVVYYRTGYTPTDYPSQKDWEARLLLEKSFAIKCPDIATQLAGSKKIQQELADPGVLERFLSDAEKKASL 332 (472)
T ss_pred EEEcCCCcEEEEEEEecccChhhCCCHHHHHHHHHHHhcCCccCCCHHHHhcccHHHHHHhcChhHHHHhcCCHHHHHHH
Confidence 5566 78999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHhcccccCCCChhhhHHHHHhhcCCCCceecCCCCCCcccccCCCcC-------------------------------
Q psy4345 82 KEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIP------------------------------- 130 (161)
Q Consensus 82 r~~F~~~~~Ld~~~~g~~~v~~a~~~p~~yVLKPQrEGGGnniyg~~I~------------------------------- 130 (161)
|+||++||+||.++.|.+++++|+++|++||||||||||||||||+||+
T Consensus 333 r~tFa~~y~Ld~s~~g~~~~~~a~~~p~~~VLKPQrEGGGNNiyg~dI~~~L~~l~~~e~~ayILMerI~P~~~~~~~vR 412 (472)
T TIGR01986 333 RKTFAGLYPLDDTKLGREGIKLALEKPSKFVLKPQREGGGNNVYGEDIPNFLKGLEEEEWDSYILMELIEPEPSENIILR 412 (472)
T ss_pred HHHhhccccCCCcccchHHHHHhhhChhheEEcCcCcCcccccchHHHHHHHHhCCHHhhhheeeeeeccCCCcceEEEe
Confidence 9999999999998888899999999999999999999999999999999
Q ss_pred ------------------------------ccceeeeecCCCCCCCcceecccccccccc
Q psy4345 131 ------------------------------EVGHMLRSKASTANEGGVAGGAGALDSPYL 160 (161)
Q Consensus 131 ------------------------------~~G~LlRTK~~~s~EGGVaaG~~~lDS~~L 160 (161)
++|||||||++++|||||||||||||||+|
T Consensus 413 ~g~~~~~~~iSELGIfG~~l~~~~~v~~N~~~GyLlRTK~~~s~EGGVaaG~g~lDS~~L 472 (472)
T TIGR01986 413 DGKSYKEQIISELGIYGCYVRNDKTVVSNEQSGSLLRTKFNTSNEGGVAAGFAVLDSIYL 472 (472)
T ss_pred CCccccCCeeecccceEEEEeCCCeEEeccceeEEEecCCCCCCCCCeeeceeecccccC
Confidence 789999999999999999999999999997
No 3
>PLN02977 glutathione synthetase
Probab=100.00 E-value=2.3e-74 Score=521.46 Aligned_cols=158 Identities=59% Similarity=1.015 Sum_probs=152.8
Q ss_pred CCCcCCceEEEEEeccCCCCCCCCCHHHHHHHHHhhHhccccCCchHHHhhhhHHHHHHhcChhhhhhccCCHHHHHHHH
Q psy4345 3 PNYRDGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAVK 82 (161)
Q Consensus 3 ~~~~~~~eVsvvYfRagY~P~dY~se~~W~~R~~lE~S~AIKcPsi~~qLag~KKvQq~L~~p~~L~~fl~~~~~~~~ir 82 (161)
.|++++.|||||||||||+|+|||++++|++|++||+|+|||||||++||||||||||+|++|++|+||++++++++.||
T Consensus 257 ~L~~~~~eVavvYfRaGY~P~dY~se~~W~aRl~lE~S~AIKcPsi~~qLaGtKKVQQ~La~p~vLerfl~~~~~~~~lr 336 (478)
T PLN02977 257 TLTVDGQPVAVVYFRAGYAPTDYPSEAEWRARLLLERSSAVKCPSIAYHLAGTKKVQQELAKPGVLERFLDDKEDIAKLR 336 (478)
T ss_pred cEEEcCEEEEEEEEecccChhhCCCHHHHHHHHHHHhcCcccCCCHHHHhcccHHHHHHhcCchHHHHhcCCHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHhcccccCCCChhhhHHHHHhhcCCCCceecCCCCCCcccccCCCcC--------------------------------
Q psy4345 83 EIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIP-------------------------------- 130 (161)
Q Consensus 83 ~~F~~~~~Ld~~~~g~~~v~~a~~~p~~yVLKPQrEGGGnniyg~~I~-------------------------------- 130 (161)
+||++||+||. +++.+++++|+++|++||||||||||||||||+||+
T Consensus 337 ~tFa~~y~Ld~-~~~~~~~~~a~~~p~~~VLKPQrEGGGNNiYg~dI~~~L~~l~~~~~~e~~ayILMerI~P~~~~~~~ 415 (478)
T PLN02977 337 KCFAGLWSLDD-EAAAEIVKLAIEKPELFVLKPQREGGGNNIYGDDLRETLERLQKEGGEDLAAYILMQRIFPPVSRTYL 415 (478)
T ss_pred HHhhccccCCc-hHHHHHHHhhhhChhheeEcCcCccchhhcchHHHHHHHHHcccCChhhhhheehhhccCCCCCCeEE
Confidence 99999999998 567789999999999999999999999999999998
Q ss_pred --------------------------------ccceeeeecCCCCCCCcceeccccccccccC
Q psy4345 131 --------------------------------EVGHMLRSKASTANEGGVAGGAGALDSPYLI 161 (161)
Q Consensus 131 --------------------------------~~G~LlRTK~~~s~EGGVaaG~~~lDS~~L~ 161 (161)
++|||||||++++|||||||||||||||+|+
T Consensus 416 vR~g~~~~~~~iSELGIfG~~l~~~~~v~~N~~~GyLlRTK~~~s~EGGVaaG~g~lDS~~L~ 478 (478)
T PLN02977 416 VRNGVCEEGETISELGIYGAYLRNGDKVIINEQSGYLLRTKAASSDEGGVAAGFAVLDSPYLT 478 (478)
T ss_pred EECCceeeCCeeeeccceEEEEECCCeEEeccceeEEEEccCCCCCCCCeeeceeeccceeeC
Confidence 7899999999999999999999999999996
No 4
>PTZ00055 glutathione synthetase; Provisional
Probab=100.00 E-value=1.7e-67 Score=487.06 Aligned_cols=152 Identities=34% Similarity=0.562 Sum_probs=144.0
Q ss_pred ceEEEEEeccCCCCCCCCC-HHHHHHHHHhhHhccccCCchHHHhhhhHHHHHHhcChhhhhhccCC-----------HH
Q psy4345 9 SPVAVIYFRAGYTPDHYYS-QLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSD-----------PN 76 (161)
Q Consensus 9 ~eVsvvYfRagY~P~dY~s-e~~W~~R~~lE~S~AIKcPsi~~qLag~KKvQq~L~~p~~L~~fl~~-----------~~ 76 (161)
.||||||||+||+|+|||+ |++|++|++||+|+|||||||++||||||||||+|++|++|+||+++ .+
T Consensus 387 ~EVsVVYfRsgY~P~dy~s~e~~W~aRl~LE~S~AIKcPSi~~QLaGtKKVQq~La~p~vLerfl~~~n~~~~~~~~~~~ 466 (619)
T PTZ00055 387 FEVSVVYFRSLYSPDHMESDERIWLVREFLEFSDAVKIPSLPAQLVGSKRIQMYLLDPSILKRLVSLYNKRKKSDKQINH 466 (619)
T ss_pred ceEEEEEEccccChhccCCcHHHHHHHHHHHhcCCccCCCHHHHHhccHHHHHHhcChHHHHHhhhhhccccccccccHH
Confidence 4999999999999999997 89999999999999999999999999999999999999999999964 56
Q ss_pred HHHHHHHHhcccccCCCChhhhHHHHHhhcCCCCceecCCCCCCcccccCCCcC--------------------------
Q psy4345 77 QIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIP-------------------------- 130 (161)
Q Consensus 77 ~~~~ir~~F~~~~~Ld~~~~g~~~v~~a~~~p~~yVLKPQrEGGGnniyg~~I~-------------------------- 130 (161)
+++.||+||+++|+++.+ .+.+++++|+++|++||||||||||||||||+||+
T Consensus 467 ~~~~lr~tFa~~~~~s~~-~~~~~v~~A~~~p~~yVLKPQREGGGNNiyG~dI~~~L~~l~~~~~~e~~aYILMerI~Pp 545 (619)
T PTZ00055 467 DMKLLKKTFALQVDPSLE-SNEHIVQDAIQNPSNYLLKPQREGGKNNLHGNEISEKLRLGYKNNKEKLSQYVLMQKIFPP 545 (619)
T ss_pred HHHHHHHhhhcccCcccc-chhHHHHhhhhChHheeecccccCCccccchhHHHHHHHHhccCChhhhhhhhHHhhccCC
Confidence 789999999999998764 33579999999999999999999999999999998
Q ss_pred -------------------------------------------ccceeeeecCCCCCCCcceeccccccccccC
Q psy4345 131 -------------------------------------------EVGHMLRSKASTANEGGVAGGAGALDSPYLI 161 (161)
Q Consensus 131 -------------------------------------------~~G~LlRTK~~~s~EGGVaaG~~~lDS~~L~ 161 (161)
++|||+|||+++++||||||||||||||+|+
T Consensus 546 ~~~~~~vR~~~~g~~~~~~~~~ISELGIfg~~l~~~~~v~~Ne~~GyLlRTK~~~s~EGGVaaG~g~lDS~~L~ 619 (619)
T PTZ00055 546 SQPAVFVRNLKSGSFEFSPENSLTELGLYHNFIFDGNECILNEQKGYLARTKNEFETGGGAISGISSVNSLLLY 619 (619)
T ss_pred CCCcEEEEcCCCCccccccCCeeecccccEEEEECCceEEeccceeEEEecCCCCCCCCCeeeceeeccceeeC
Confidence 6899999999999999999999999999996
No 5
>KOG0021|consensus
Probab=100.00 E-value=1.8e-64 Score=449.23 Aligned_cols=158 Identities=55% Similarity=0.966 Sum_probs=154.6
Q ss_pred CCcCCceEEEEEeccCCCCCCCCCHHHHHHHHHhhHhccccCCchHHHhhhhHHHHHHhcChhhhhhccCCHHHHHHHHH
Q psy4345 4 NYRDGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAVKE 83 (161)
Q Consensus 4 ~~~~~~eVsvvYfRagY~P~dY~se~~W~~R~~lE~S~AIKcPsi~~qLag~KKvQq~L~~p~~L~~fl~~~~~~~~ir~ 83 (161)
++++|+||||||||+||+|+||||+.+|++|+++|.|.|||||+|++||+|+||+||+|++|++|+||+.+++..+.+|.
T Consensus 250 l~i~~~evAvVyfr~gy~~~dypS~~~wearl~~e~s~Aik~p~i~tqlagsKkiQQvL~~~gvlerf~~~~e~~a~lr~ 329 (468)
T KOG0021|consen 250 LFIDGQEVAVVYFRVGYTPDDYPSEKEWEARLLIENSLAIKCPSIATQLAGSKKIQQVLAEPGVLERFLGGPELQADLRA 329 (468)
T ss_pred hcccCceEEEEEEEeccCCCCCCchhhHHHHHHHHHhhhhcCcchHHHHhchHHHHHHHhcccchhhhcCCccHHHHHHh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HhcccccCCCChhhhHHHHHhhcCCCCceecCCCCCCcccccCCCcC---------------------------------
Q psy4345 84 IFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIP--------------------------------- 130 (161)
Q Consensus 84 ~F~~~~~Ld~~~~g~~~v~~a~~~p~~yVLKPQrEGGGnniyg~~I~--------------------------------- 130 (161)
+|++||+||++++|.++++.|+++|+.|||||||||||||+||++|+
T Consensus 330 tfa~~~~ld~t~~g~e~~~~A~~~P~~fVlkpqrEgGGnN~yg~~~~~~L~kl~~eer~AyILMe~I~P~~~enylvr~g 409 (468)
T KOG0021|consen 330 TFAGMYPLDDTERGKEGIKLALEKPEDFVLKPQREGGGNNTYGDDIPQLLKKLPEEERDAYILMEKIEPEPSENYLLRPG 409 (468)
T ss_pred hhhceeeccCchhhHHHHHHHHhCchhheecCcccCCCCcccccccHHHHHhchhhhhhhhHHHHhhCCccccceEecCC
Confidence 99999999998999999999999999999999999999999999999
Q ss_pred ----------------------------ccceeeeecCCCCCCCcceeccccccccccC
Q psy4345 131 ----------------------------EVGHMLRSKASTANEGGVAGGAGALDSPYLI 161 (161)
Q Consensus 131 ----------------------------~~G~LlRTK~~~s~EGGVaaG~~~lDS~~L~ 161 (161)
++|||||||++++|||||||||||||||+|+
T Consensus 410 ~~~~~~~VSELGIyG~~v~~~~~vv~N~qsGhlLRTK~~stneGGVAAG~gvLDSpyL~ 468 (468)
T KOG0021|consen 410 KPEKVDAVSELGIYGVYVGNIDEVVQNKQSGHLLRTKPKSTNEGGVAAGFAVLDSIYLY 468 (468)
T ss_pred CceehhhhhhhceeEEEecchhhhhhccccchheecccccccCcchhhceeeccCcccC
Confidence 7899999999999999999999999999996
No 6
>PF03917 GSH_synth_ATP: Eukaryotic glutathione synthase, ATP binding domain; InterPro: IPR005615 This entry represents eukaryotic glutathione synthetase (6.3.2.3 from EC) (GSS), a homodimeric enzyme that catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to phosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis, the first step being catalysed by gamma-glutamylcysteine synthetase []. In humans, defects in GSS are inherited in an autosomal recessive way and are the cause of severe metabolic acidosis, 5-oxoprolinuria, and increased rate of haemolysis and defective function of the central nervous system. ; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 3KAJ_A 3KAL_A 3KAK_A 2WYO_A 2HGS_A 1M0W_B 1M0T_A.
Probab=100.00 E-value=1.3e-48 Score=344.60 Aligned_cols=107 Identities=61% Similarity=1.026 Sum_probs=101.1
Q ss_pred hhHHHHHHhcChhhhhhccCCHHHHHHHHHHhcccccCCCChhhhHHHHHhhcCCCCceecCCCCCCcccccCCCcC---
Q psy4345 54 GAKKVQQALAKEGTLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIP--- 130 (161)
Q Consensus 54 g~KKvQq~L~~p~~L~~fl~~~~~~~~ir~~F~~~~~Ld~~~~g~~~v~~a~~~p~~yVLKPQrEGGGnniyg~~I~--- 130 (161)
|||||||+|++|++|+||+++++++++||+||++||+||++++|.+++++|+++|++||||||||||||||||+||+
T Consensus 202 GtKKVQq~L~~pgvLerfl~~~~~~~~lr~tFa~ly~Ld~~~~g~~~~~~a~~~P~~yVLKPQREGGGNNiyg~~i~~~L 281 (370)
T PF03917_consen 202 GTKKVQQVLADPGVLERFLSDKEEAARLRSTFAGLYSLDDSEEGDEAVKLALENPENYVLKPQREGGGNNIYGEDIPEFL 281 (370)
T ss_dssp TSHHHHHHTTSTTHHHHSTTTHHHHHHHHHTC--EEESSSSHHHHCHHHHHHCSGGGEEEEESS-SSSSCBEHHHHHHHH
T ss_pred hHHHHHHHhcCHhHHHHHcCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHhChHheEecccccCCcccccHHHHHHHH
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------------------ccceeeeecCCCCCCCcceec
Q psy4345 131 -----------------------------------------------------------EVGHMLRSKASTANEGGVAGG 151 (161)
Q Consensus 131 -----------------------------------------------------------~~G~LlRTK~~~s~EGGVaaG 151 (161)
++|||||||+++++|||||+|
T Consensus 282 ~~l~~~~e~~ayILM~rI~P~~~~n~~vr~~~~~~~~~vSELGifg~~l~~~~~~~~n~~~G~LlRTK~~~~~EGGVaaG 361 (370)
T PF03917_consen 282 KKLSESEERSAYILMERIHPPPVPNYIVRNGEVEVGDVVSELGIFGTILFDGDEVIMNEQAGYLLRTKPSSSDEGGVAAG 361 (370)
T ss_dssp HTCTCTGGGGGEEEEE---B--EEEEEEETTEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSTETTTT
T ss_pred HhcCChhhhhheeeeccccCCCcceEEEeCCCccccCeeeeccceEEEEeCCCeEEEecccceEEeecCCCCCCCCcccc
Confidence 789999999999999999999
Q ss_pred ccccccccc
Q psy4345 152 AGALDSPYL 160 (161)
Q Consensus 152 ~~~lDS~~L 160 (161)
|||||||+|
T Consensus 362 ~~~lDS~~L 370 (370)
T PF03917_consen 362 FGVLDSPYL 370 (370)
T ss_dssp SEEEE-EEE
T ss_pred eeeccccCC
Confidence 999999987
No 7
>PF03199 GSH_synthase: Eukaryotic glutathione synthase; InterPro: IPR004887 This entry represents the substrate-binding domain of glutathione synthetase (6.3.2.3 from EC) (GSS), a homodimeric enzyme that catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to phosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis, the first step being catalysed by gamma-glutamylcysteine synthetase []. In humans, defects in GSS are inherited in an autosomal recessive way and are the cause of severe metabolic acidosis, 5-oxoprolinuria, and increased rate of haemolysis and defective function of the central nervous system. The substrate-binding domain has a 3-layer alpha/beta/alpha structure [].; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 3KAJ_A 3KAL_A 3KAK_A 2WYO_A 2HGS_A 1M0W_B 1M0T_A.
Probab=99.93 E-value=2.4e-27 Score=178.00 Aligned_cols=51 Identities=67% Similarity=1.158 Sum_probs=44.7
Q ss_pred CCCcCC--ceEEEEEeccCCCCCCCCCHHHHHHHHHhhHhccccCCchHHHhh
Q psy4345 3 PNYRDG--SPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLA 53 (161)
Q Consensus 3 ~~~~~~--~eVsvvYfRagY~P~dY~se~~W~~R~~lE~S~AIKcPsi~~qLa 53 (161)
++++++ .||||||||+||+|+|||||++|++|++||+|+|||||||++|||
T Consensus 53 ~l~~~~~~~eVsVVYfRaGY~P~dy~se~~W~~R~~LE~S~AIKcPsi~~qLa 105 (105)
T PF03199_consen 53 RLFVDGTGQEVSVVYFRAGYTPDDYPSEKEWEARLLLERSRAIKCPSIAYQLA 105 (105)
T ss_dssp -EEETTTTEEEEEEEECS-SSGGG-SSHHHHHHHHHHHHSSSEEET-HHHHHC
T ss_pred CcccCCccEEEEEEEEecCcChhhCCcHHHHHHHHHHHhcCcccCCCHHHhhC
Confidence 356667 899999999999999999999999999999999999999999997
No 8
>KOG0021|consensus
Probab=97.38 E-value=0.00018 Score=65.86 Aligned_cols=57 Identities=4% Similarity=-0.371 Sum_probs=54.4
Q ss_pred ceEEEEEeccCCCCCCCCCHHHHHHHHHhhHhccccCCchHHHhhhhHHHHHHhcCh
Q psy4345 9 SPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKE 65 (161)
Q Consensus 9 ~eVsvvYfRagY~P~dY~se~~W~~R~~lE~S~AIKcPsi~~qLag~KKvQq~L~~p 65 (161)
.+|.+.|+|++|.+.++.+-+.|.+|++.+.+.|++||+..+++.+++++|+....+
T Consensus 258 AvVyfr~gy~~~dypS~~~wearl~~e~s~Aik~p~i~tqlagsKkiQQvL~~~gvl 314 (468)
T KOG0021|consen 258 AVVYFRVGYTPDDYPSEKEWEARLLIENSLAIKCPSIATQLAGSKKIQQVLAEPGVL 314 (468)
T ss_pred EEEEEEeccCCCCCCchhhHHHHHHHHHhhhhcCcchHHHHhchHHHHHHHhcccch
Confidence 579999999999999999999999999999999999999999999999999998754
No 9
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=95.16 E-value=0.039 Score=50.88 Aligned_cols=121 Identities=23% Similarity=0.300 Sum_probs=83.2
Q ss_pred CCcCCceEEEEEeccCCCCCCCCCHHHH-HHHHHhhHhcccc---CCchHHHhhhhHHHHHHhcChhhhhhccCCHHHHH
Q psy4345 4 NYRDGSPVAVIYFRAGYTPDHYYSQLEW-DARLLMERSTAIK---CPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQ 79 (161)
Q Consensus 4 ~~~~~~eVsvvYfRagY~P~dY~se~~W-~~R~~lE~S~AIK---cPsi~~qLag~KKvQq~L~~p~~L~~fl~~~~~~~ 79 (161)
|..+|.+|..||=|.- +++.. +.| ...-++.-.++=+ .=|...||...|-+=.+|.+|... .|++ +++.+
T Consensus 231 L~~~~~~ID~VyRR~V--t~e~l--~~~d~~~~li~Ay~~~av~~vgsfrs~l~hnK~iFaiL~d~~~~-~~Lt-~ee~~ 304 (445)
T PF14403_consen 231 LYAGGRPIDAVYRRFV--TSELL--ERYDEVQPLIQAYRDGAVCMVGSFRSQLLHNKIIFAILHDERTT-AFLT-AEERA 304 (445)
T ss_pred EEECCEeeehhhHhhh--hHHhh--hccccchHHHHHHhcCCeEEecchhhhhhhhhHHHHHhcChhhc-ccCC-HHHHH
Confidence 3457789999998864 33433 234 4444555444433 347788999999999999999654 3665 57788
Q ss_pred HHHHHhcccccCCCC-----hhhhHHHHHhhcCCCCceecCCCCCCccccc-CCCcC
Q psy4345 80 AVKEIFTGLWSLDYD-----KEGDAAVEMALKDPGKYVLKPQREGGGNNIY-GDLIP 130 (161)
Q Consensus 80 ~ir~~F~~~~~Ld~~-----~~g~~~v~~a~~~p~~yVLKPQrEGGGnniy-g~~I~ 130 (161)
-|+++.=-.+.|+.. .+..+.++.|++|-++|||||..+=||..+| |-+..
T Consensus 305 ~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~ 361 (445)
T PF14403_consen 305 FIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETS 361 (445)
T ss_pred HHHHhCCceEEEcCccccccccchhHHHHHHhchhcEEeccccccCCCCeEECCcCC
Confidence 898885444445541 1123667889999999999999888876544 66655
No 10
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=55.81 E-value=8.5 Score=27.86 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.1
Q ss_pred hHHHHHHhcChhhhhhccCCHH
Q psy4345 55 AKKVQQALAKEGTLEKFLSDPN 76 (161)
Q Consensus 55 ~KKvQq~L~~p~~L~~fl~~~~ 76 (161)
.|-+||+-++|+..++|..|++
T Consensus 7 nrli~~L~~dp~~rerF~~DPe 28 (81)
T cd07922 7 NRLIQELFKDPGLIERFQDDPS 28 (81)
T ss_pred HHHHHHHhcCHHHHHHHHHCHH
Confidence 5889999999999999988764
No 11
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=51.76 E-value=12 Score=26.51 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.6
Q ss_pred hHHHHHHhcChhhhhhccCCHH
Q psy4345 55 AKKVQQALAKEGTLEKFLSDPN 76 (161)
Q Consensus 55 ~KKvQq~L~~p~~L~~fl~~~~ 76 (161)
.|.+++.+.+|...++|..|++
T Consensus 6 ~~~~~~~~~~~~~re~f~~dp~ 27 (77)
T cd07321 6 EKLLEQLLVKPEVKERFKADPE 27 (77)
T ss_pred HHHHHHHhcCHHHHHHHHhCHH
Confidence 5889999999999999998863
No 12
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=44.46 E-value=11 Score=22.40 Aligned_cols=19 Identities=32% Similarity=0.891 Sum_probs=13.9
Q ss_pred EEEeccCCCCCCCCCHHHHH
Q psy4345 13 VIYFRAGYTPDHYYSQLEWD 32 (161)
Q Consensus 13 vvYfRagY~P~dY~se~~W~ 32 (161)
-||||.|-+|+. |+-..|.
T Consensus 11 ~v~~R~Gis~~~-P~G~~W~ 29 (32)
T PF06462_consen 11 SVYFRTGISPSN-PEGTSWE 29 (32)
T ss_pred CEEEECcCCCCC-CCCCCcE
Confidence 389999999975 4445664
No 13
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=41.41 E-value=44 Score=30.68 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=29.5
Q ss_pred CceEEEEEeccCCCCCCCC-CHHHHHHHHHhhHhccccCCchHHH
Q psy4345 8 GSPVAVIYFRAGYTPDHYY-SQLEWDARLLMERSTAIKCPSIHYH 51 (161)
Q Consensus 8 ~~eVsvvYfRagY~P~dY~-se~~W~~R~~lE~S~AIKcPsi~~q 51 (161)
+..++.+|-|.|=.-.+|. -++.|-++.+=+...-+-||.|+.-
T Consensus 48 ~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~s 92 (389)
T COG2232 48 GDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPFS 92 (389)
T ss_pred cccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcceeeeecc
Confidence 4566677777776555432 1358988888777777777777653
No 14
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=41.37 E-value=7 Score=30.21 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=9.0
Q ss_pred cccccCCCcC---cccee
Q psy4345 121 GNNIYGDLIP---EVGHM 135 (161)
Q Consensus 121 Gnniyg~~I~---~~G~L 135 (161)
|+++||.|++ ..|||
T Consensus 12 ~igvYGse~~~~GFSGYL 29 (114)
T PF09249_consen 12 GIGVYGSELKTRGFSGYL 29 (114)
T ss_dssp HTT-B-SSTTT-SB-HHH
T ss_pred cCCCcchhhhcCcchHHH
Confidence 5789999999 45554
No 15
>PRK12458 glutathione synthetase; Provisional
Probab=40.23 E-value=72 Score=27.93 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=30.3
Q ss_pred ceEEEEEeccCCCCCCCCCHHHHHHH------HHhhHhcc-ccCCchHHHhhhhHHHHHHhcC
Q psy4345 9 SPVAVIYFRAGYTPDHYYSQLEWDAR------LLMERSTA-IKCPSIHYHLAGAKKVQQALAK 64 (161)
Q Consensus 9 ~eVsvvYfRagY~P~dY~se~~W~~R------~~lE~S~A-IKcPsi~~qLag~KKvQq~L~~ 64 (161)
.++.+|++|.....+++ ...|-.. .++|.... +-.+.-....+.-|..++.|.+
T Consensus 78 ~~~d~V~~R~~~~~~~~--~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~ 138 (338)
T PRK12458 78 AGFDVIFLRANPPLDPL--ARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE 138 (338)
T ss_pred hhCCEEEEeCCCCCChH--HHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc
Confidence 36789999996544332 2345432 23344332 2344445566677777766665
No 16
>KOG0393|consensus
Probab=31.70 E-value=13 Score=31.10 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=21.3
Q ss_pred cCCchHHHhhhhHHHHHHhcChhhhhhcc
Q psy4345 44 KCPSIHYHLAGAKKVQQALAKEGTLEKFL 72 (161)
Q Consensus 44 KcPsi~~qLag~KKvQq~L~~p~~L~~fl 72 (161)
-||+++.-|+|+|.-.+ .+++.+++.-
T Consensus 106 ~cp~vpiiLVGtk~DLr--~d~~~~~~l~ 132 (198)
T KOG0393|consen 106 HCPNVPIILVGTKADLR--DDPSTLEKLQ 132 (198)
T ss_pred hCCCCCEEEEeehHHhh--hCHHHHHHHH
Confidence 47999999999999888 6666665543
No 17
>PF01228 Gly_radical: Glycine radical; InterPro: IPR001150 Synonym(s):Pyruvate formate-lyase Escherichia coli Formate C-acetyltransferase (2.3.1.54 from EC) (genes pflB and pflD) is a key enzyme of anaerobic glucose metabolism, it converts pyruvate and CoA into acetyl-CoA and pyruvate. This enzyme is posttranslationally interconverted, under anaerobic conditions, from an inactive to an active form that carries a stable radical localized to a specific glycine at the C terminus []. Such a glycine radical seems [] also to be present in E. coli (gene nrdD) and Bacteriophage T4 (gene nrdD or sunY) anaerobic ribonucleoside-triphosphate reductase (1.17.4.2 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1MZO_B 3PFL_B 1H18_A 2PFL_A 1CM5_B 1H16_A 1H17_A 1R9E_A 1R8W_A 1R9D_A ....
Probab=26.79 E-value=29 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=24.2
Q ss_pred HHHHHHHhcccccCCCChhhhHHHHHhhcCCCCc
Q psy4345 78 IQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKY 111 (161)
Q Consensus 78 ~~~ir~~F~~~~~Ld~~~~g~~~v~~a~~~p~~y 111 (161)
...|+..|.+-+.++.+--..+....|.++|++|
T Consensus 58 ~~~i~~~~~gg~~iq~Nvv~~e~L~~Aq~~Pe~y 91 (106)
T PF01228_consen 58 NSLIRTYFNGGQHIQFNVVDRETLRDAQKHPEKY 91 (106)
T ss_dssp HHHHHHHHTT-SEEEEEES-HHHHHHHHHSGGGG
T ss_pred HHHHHHHhccCceeEEEecCHHHHHHHHhCcccc
Confidence 4667777877777665444458889999999987
No 18
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=24.65 E-value=2.1e+02 Score=27.83 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCceEEEEEeccCCCCCCCCCHHHHHHHHHhhHhc--cccCCchHHHhhhhHHHHHHhcChhhh------hhccCCHHHH
Q psy4345 7 DGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERST--AIKCPSIHYHLAGAKKVQQALAKEGTL------EKFLSDPNQI 78 (161)
Q Consensus 7 ~~~eVsvvYfRagY~P~dY~se~~W~~R~~lE~S~--AIKcPsi~~qLag~KKvQq~L~~p~~L------~~fl~~~~~~ 78 (161)
+|.+|.+||=|. .-||-.+.+=+.+. --..|+...|+...|.+-++|.++.+. .-.++++.-.
T Consensus 431 dg~~I~~vfKly---------PWE~~~~dira~~d~d~~~~~~f~g~~~h~~~L~~lL~~~~~~~iEP~Wk~llsNKaiL 501 (619)
T PRK10507 431 DGRLVNCVWKTW---------AWETALDQIREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAIL 501 (619)
T ss_pred CCCEeeeeeecc---------cHHHhhhHHhhhccchhcccccccccccchhHHHHhhccCceEEEcccHHhhcccHHHH
Q ss_pred HHHHHHhcccccCCCChhhhHHHHHhhcCCCCceecC--CCCCCcccccCCC
Q psy4345 79 QAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKP--QREGGGNNIYGDL 128 (161)
Q Consensus 79 ~~ir~~F~~~~~Ld~~~~g~~~v~~a~~~p~~yVLKP--QrEGGGnniyg~~ 128 (161)
..|-+.|-+-=.|=.+-...+ .++..+. ||-|| -|||++--|+..+
T Consensus 502 plLW~l~p~Hp~LLpayfe~d---~~l~~~~-yV~KPi~GREG~nV~i~~~~ 549 (619)
T PRK10507 502 PVLWSLFPHHRYLLDTDFTVN---DELVKTG-YAVKPIAGRCGSNIDLVSHQ 549 (619)
T ss_pred HHHHHhCCCCcccccccccCC---cccccCC-eEeccCCCcCCCCEEEEeCC
No 19
>PF11502 BCL9: B-cell lymphoma 9 protein; InterPro: IPR024670 The Wnt pathway plays a role in embryonic development, stem cell growth and tumorigenesis. B-cell lymphoma 9 (BCL9) associates with beta-catenin and Tcf in the nucleus when the Wnt pathway is stimulated leading to the transactivation of Wnt target genes []. This entry represents a beta-catenin binding domain found in BCL9 and BCL9 homologues.; PDB: 3SL9_F 2GL7_C.
Probab=24.05 E-value=56 Score=20.98 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=11.0
Q ss_pred HhhhhHHHHHHhc
Q psy4345 51 HLAGAKKVQQALA 63 (161)
Q Consensus 51 qLag~KKvQq~L~ 63 (161)
||+.-||+|+.|-
T Consensus 13 qL~tlr~mq~~lf 25 (40)
T PF11502_consen 13 QLATLRDMQRMLF 25 (40)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhC
Confidence 7899999999874
No 20
>PF05029 TIMELESS_C: Timeless protein C terminal region; InterPro: IPR007725 The timeless (tim) gene is essential for circadian function in Drosophila. Putative homologues of Drosophila tim have been identified in both mice and humans (mTim and hTIM, respectively). Mammalian TIM is not the true orthologue of Drosophila TIM, but is the likely orthologue of a fly gene, timeout (also called tim-2) []. mTim has been shown to be essential for embryonic development, but does not have substantiated circadian function []. Some family members contain a SANT domain in this region.
Probab=23.73 E-value=78 Score=30.15 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.1
Q ss_pred ccCCchHHHhhhhHHHHHHhcChhhhh
Q psy4345 43 IKCPSIHYHLAGAKKVQQALAKEGTLE 69 (161)
Q Consensus 43 IKcPsi~~qLag~KKvQq~L~~p~~L~ 69 (161)
-||+.+.|||.=.--+|.+|.+|..+.
T Consensus 9 ~~~~~mLfqlsl~~lF~~il~~~~~~~ 35 (566)
T PF05029_consen 9 LKMSVMLFQLSLFRLFQRILKDPKSLD 35 (566)
T ss_pred CCCceeeHHHHHHHHHHHHHhCcccCC
Confidence 489999999999999999999997553
No 21
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=23.28 E-value=16 Score=25.34 Aligned_cols=13 Identities=38% Similarity=0.905 Sum_probs=11.3
Q ss_pred cceeccccccccc
Q psy4345 147 GVAGGAGALDSPY 159 (161)
Q Consensus 147 GVaaG~~~lDS~~ 159 (161)
++.+|||++.+|+
T Consensus 22 AiLSG~gaVstpy 34 (72)
T PF12537_consen 22 AILSGFGAVSTPY 34 (72)
T ss_pred HHHhhhhHHccHH
Confidence 6789999999986
No 22
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=21.20 E-value=42 Score=27.11 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=17.2
Q ss_pred HHHHHhhcCCCCceecCCCCCCcccccC
Q psy4345 99 AAVEMALKDPGKYVLKPQREGGGNNIYG 126 (161)
Q Consensus 99 ~~v~~a~~~p~~yVLKPQrEGGGnniyg 126 (161)
+.++..+++-..+||||--..||.++|.
T Consensus 22 ~~i~~f~~~~~~~VlKPl~g~gG~gV~~ 49 (173)
T PF02955_consen 22 EEIRAFIEEHGDIVLKPLDGMGGRGVFR 49 (173)
T ss_dssp HHHHHHHHHHSSEEEEESS--TTTT-EE
T ss_pred HHHHHHHHHCCCEEEEECCCCCCcCEEE
Confidence 3444444444669999999999987764
No 23
>PF13973 DUF4222: Domain of unknown function (DUF4222)
Probab=21.12 E-value=1e+02 Score=20.34 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.7
Q ss_pred EEEEEeccCCCCCCCCC
Q psy4345 11 VAVIYFRAGYTPDHYYS 27 (161)
Q Consensus 11 VsvvYfRagY~P~dY~s 27 (161)
--|.|.|.||.-+.-.+
T Consensus 25 ~rV~y~R~GY~~~c~~p 41 (53)
T PF13973_consen 25 NRVTYRRDGYEHPCVMP 41 (53)
T ss_pred CEEEEEECCCCccccCC
Confidence 37999999998777654
No 24
>PHA02087 hypothetical protein
Probab=20.37 E-value=43 Score=24.18 Aligned_cols=15 Identities=40% Similarity=0.767 Sum_probs=12.4
Q ss_pred cCCCCCCcccccCCC
Q psy4345 114 KPQREGGGNNIYGDL 128 (161)
Q Consensus 114 KPQrEGGGnniyg~~ 128 (161)
=|-.||||..+|.++
T Consensus 59 lpe~~ggggi~fdde 73 (83)
T PHA02087 59 LPESEGGGGITFDDE 73 (83)
T ss_pred CCcccCCCceeeccH
Confidence 477899999999874
Done!