RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4345
(161 letters)
>gnl|CDD|238140 cd00228, eu-GS, Eukaryotic Glutathione Synthetase (eu-GS);
catalyses the production of glutathione from
gamma-glutamylcysteine and glycine in an ATP-dependent
manner. Belongs to the ATP-grasp superfamily.
Length = 471
Score = 208 bits (531), Expect = 3e-66
Identities = 77/125 (61%), Positives = 95/125 (76%)
Query: 7 DGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEG 66
DG VAV+YFRAGYTPD Y S+ EW+ARLLMERS+AIKCPSI LAG KK+QQ LA+ G
Sbjct: 254 DGQEVAVVYFRAGYTPDDYPSESEWEARLLMERSSAIKCPSISTQLAGTKKIQQELAEPG 313
Query: 67 TLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYG 126
LE+FL +P ++ ++ F GL+SLD +EGD V AL+ P +VLKPQREGGGNNIYG
Sbjct: 314 VLERFLPNPEEVAKLRATFAGLYSLDDTEEGDEIVRKALEKPELFVLKPQREGGGNNIYG 373
Query: 127 DLIPE 131
+ + E
Sbjct: 374 EEMRE 378
>gnl|CDD|217791 pfam03917, GSH_synth_ATP, Eukaryotic glutathione synthase, ATP
binding domain.
Length = 468
Score = 207 bits (530), Expect = 4e-66
Identities = 78/125 (62%), Positives = 96/125 (76%)
Query: 7 DGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEG 66
DG VAV+YFRAGYTPD Y S+ EW+ARLLME+S+AIKCPSI LAG KK+QQ LAK G
Sbjct: 253 DGQEVAVVYFRAGYTPDDYPSESEWEARLLMEQSSAIKCPSISTQLAGTKKIQQELAKPG 312
Query: 67 TLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYG 126
LE+FL + I +++ F GLWSLD +EGD V++A++ P +VLKPQREGGGNNIYG
Sbjct: 313 VLERFLENKEDIAKLRKTFAGLWSLDDTEEGDEIVKLAIEKPELFVLKPQREGGGNNIYG 372
Query: 127 DLIPE 131
D + E
Sbjct: 373 DDMRE 377
>gnl|CDD|215528 PLN02977, PLN02977, glutathione synthetase.
Length = 478
Score = 206 bits (525), Expect = 3e-65
Identities = 77/121 (63%), Positives = 92/121 (76%), Gaps = 1/121 (0%)
Query: 7 DGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEG 66
DG PVAV+YFRAGY P Y S+ EW ARLL+ERS+A+KCPSI YHLAG KKVQQ LAK G
Sbjct: 261 DGQPVAVVYFRAGYAPTDYPSEAEWRARLLLERSSAVKCPSIAYHLAGTKKVQQELAKPG 320
Query: 67 TLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYG 126
LE+FL D I +++ F GLWSLD D+ V++A++ P +VLKPQREGGGNNIYG
Sbjct: 321 VLERFLDDKEDIAKLRKCFAGLWSLD-DEAAAEIVKLAIEKPELFVLKPQREGGGNNIYG 379
Query: 127 D 127
D
Sbjct: 380 D 380
>gnl|CDD|233670 TIGR01986, glut_syn_euk, glutathione synthetase, eukaryotic. This
model represents the eukaryotic glutathione synthetase,
which shows little resemblance to the analogous enzyme
of Gram-negative bacteria (TIGR01380). In the
Kinetoplastida, trypanothione replaces glutathione, but
can be made from glutathione; a sequence from Leishmania
is not included in the seed, is highly divergent, and
therefore scores between the trusted and noise cutoffs.
Length = 472
Score = 188 bits (478), Expect = 2e-58
Identities = 68/124 (54%), Positives = 91/124 (73%)
Query: 8 GSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGT 67
G +AV+Y+R GYTP Y SQ +W+ARLL+E+S AIKCP I LAG+KK+QQ LA G
Sbjct: 259 GQEIAVVYYRTGYTPTDYPSQKDWEARLLLEKSFAIKCPDIATQLAGSKKIQQELADPGV 318
Query: 68 LEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGD 127
LE+FLSD + ++++ F GL+ LD K G +++AL+ P K+VLKPQREGGGNN+YG+
Sbjct: 319 LERFLSDAEKKASLRKTFAGLYPLDDTKLGREGIKLALEKPSKFVLKPQREGGGNNVYGE 378
Query: 128 LIPE 131
IP
Sbjct: 379 DIPN 382
>gnl|CDD|217420 pfam03199, GSH_synthase, Eukaryotic glutathione synthase.
Length = 105
Score = 97.6 bits (244), Expect = 3e-27
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 10 PVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLA 53
VAV+YFRAGYTP Y S+ EW+ARLL+ERS AIKCPSI LA
Sbjct: 62 EVAVVYFRAGYTPSDYPSEAEWEARLLLERSRAIKCPSILTQLA 105
>gnl|CDD|240247 PTZ00055, PTZ00055, glutathione synthetase; Provisional.
Length = 619
Score = 99.1 bits (247), Expect = 7e-25
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 11/139 (7%)
Query: 4 NYRDGSPVAVIYFRAGYTPDHYYS-QLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQAL 62
RD V+V+YFR+ Y+PDH S + W R +E S A+K PS+ L G+K++Q L
Sbjct: 382 YKRDCFEVSVVYFRSLYSPDHMESDERIWLVREFLEFSDAVKIPSLPAQLVGSKRIQMYL 441
Query: 63 AKEGTLEKFLS-------DPNQIQAVKEIF--TGLWSLDYDKEGDA-AVEMALKDPGKYV 112
L++ +S QI ++ T +D E + V+ A+++P Y+
Sbjct: 442 LDPSILKRLVSLYNKRKKSDKQINHDMKLLKKTFALQVDPSLESNEHIVQDAIQNPSNYL 501
Query: 113 LKPQREGGGNNIYGDLIPE 131
LKPQREGG NN++G+ I E
Sbjct: 502 LKPQREGGKNNLHGNEISE 520
Score = 31.7 bits (72), Expect = 0.18
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 131 EVGHMLRSKASTANEGGVAGGAGALDSPYL 160
+ G++ R+K GG G +++S L
Sbjct: 589 QKGYLARTKNEFETGGGAISGISSVNSLLL 618
>gnl|CDD|163680 cd07942, DRE_TIM_LeuA, Mycobacterium tuberculosis LeuA3 and related
proteins, N-terminal catalytic TIM barrel domain.
Alpha-isopropylmalate synthase (LeuA), a key enzyme in
leucine biosynthesis, catalyzes the first committed step
in the pathway, converting acetyl-CoA and
alpha-ketoisovalerate to alpha-isopropyl malate and CoA.
Although the reaction catalyzed by LeuA is similar to
that of the Arabidopsis thaliana IPMS1 protein, the two
fall into phylogenetically distinct families within the
same superfamily. LeuA has and N-terminal TIM barrel
catalytic domain, a helical linker domain, and a
C-terminal regulatory domain. LeuA forms a homodimer in
which the linker domain of one monomer sits over the
catalytic domain of the other, inserting residues into
the active site that may be important for catalysis.
Homologs of LeuA are found in bacteria as well as fungi.
This family includes alpha-isopropylmalate synthases I
(LEU4) and II (LEU9) from Saccharomyces cerevisiae.
This family belongs to the DRE-TIM metallolyase
superfamily. DRE-TIM metallolyases include
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 284
Score = 33.7 bits (78), Expect = 0.023
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 22/62 (35%)
Query: 21 TPDHYYSQLEWDARLLMERSTAIKCPSIHYH--------------LAGAKKVQQALAKEG 66
TP+ Y Q+EW R L R + I S+H H LAGA +V EG
Sbjct: 189 TPNVYADQIEWFCRNLSRRESVII--SLHPHNDRGTGVAAAELALLAGADRV------EG 240
Query: 67 TL 68
TL
Sbjct: 241 TL 242
>gnl|CDD|218619 pfam05510, Sarcoglycan_2, Sarcoglycan alpha/epsilon. Sarcoglycans
are a subcomplex of transmembrane proteins which are
part of the dystrophin-glycoprotein complex. They are
expressed in the skeletal, cardiac and smooth muscle.
Although numerous studies have been conducted on the
sarcoglycan subcomplex in skeletal and cardiac muscle,
the manner of the distribution and localisation of these
proteins along the nonjunctional sarcolemma is not
clear. This family contains alpha and epsilon members.
Length = 398
Score = 30.6 bits (69), Expect = 0.32
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 55 AKKVQQALAKEGTLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLK 114
V + K +E L D +I+ +K I LW + VE AL G+ L
Sbjct: 126 LPYVAEFKIKNLNVEHLL-DSGRIENLKNILRNLWPGSPEDLQVINVESALDRGGRVPLP 184
Query: 115 PQREG 119
P +EG
Sbjct: 185 PNKEG 189
>gnl|CDD|219818 pfam08393, DHC_N2, Dynein heavy chain, N-terminal region 2.
Dyneins are described as motor proteins of eukaryotic
cells, as they can convert energy derived from the
hydrolysis of ATP to force and movement along
cytoskeletal polymers, such as microtubules. This region
is found C-terminal to the dynein heavy chain N-terminal
region 1 (pfam08385) in many members of this family. No
functions seem to have been attributed specifically to
this region.
Length = 408
Score = 29.9 bits (68), Expect = 0.64
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 25/78 (32%)
Query: 57 KVQQALAKEGTLEK---------FLS------------DPNQIQA-VKEIFTGLWSLDYD 94
K+Q++L LE FLS DP +Q +K++F G+ SL++D
Sbjct: 295 KIQKSL--NEYLESKRSAFPRFYFLSNDDLLEILSQSKDPTAVQPHLKKLFEGISSLEFD 352
Query: 95 KEGDAAVEMALKDPGKYV 112
+E + M + G+ V
Sbjct: 353 EENNNITGMISSE-GEEV 369
>gnl|CDD|198327 cd10294, GST_C_ValRS_N, Glutathione S-transferase C-terminal-like,
alpha helical domain of vertebrate Valyl-tRNA
synthetase. Glutathione S-transferase (GST) C-terminal
domain family, Valyl-tRNA synthetase (ValRS) subfamily;
This model characterizes the GST_C-like domain found in
the N-terminal region of human ValRS and its homologs
from other vertebrates such as frog and zebrafish.
Aminoacyl-tRNA synthetases (aaRSs) comprise a family of
enzymes that catalyze the coupling of amino acids with
their matching tRNAs. This involves the formation of an
aminoacyl adenylate using ATP, followed by the transfer
of the activated amino acid to the 3'-adenosine moiety
of the tRNA. AaRSs may also be involved in translational
and transcriptional regulation, as well as in tRNA
processing. They typically form large stable complexes
with other proteins. ValRS forms a stable complex with
Elongation Factor-1H (EF-1H), and together, they
catalyze consecutive steps in protein biosynthesis, tRNA
aminoacylation and its transfer to EF. The GST_C-like
domain of ValRS from higher eukaryotes is likely
involved in protein-protein interactions, to mediate the
formation of the multi-aaRS complex that acts as a
molecular hub to coordinate protein synthesis. ValRSs
from prokaryotes and lower eukaryotes, such as fungi and
plants, do not appear to contain this GST_C-like domain.
Length = 123
Score = 27.9 bits (62), Expect = 1.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 98 DAAVEMALKDPGKYVLKPQREGGGNNI 124
D AV AL P KYVL P R N+
Sbjct: 71 DIAVACALLLPFKYVLDPARRESLLNV 97
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 27.9 bits (62), Expect = 2.6
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 16 FRAGYT---PDHYYSQLEWDARLLME-----------RSTAIK---CPSIHYHLAGAKK- 57
FR P H YS + R L+E RS A K C +LA A
Sbjct: 57 FRGCKAEDMPPHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGS 116
Query: 58 ------VQQALAKEGTLEKFLSDPNQIQAVKEIFTGLWSLDYDKEG---DAAVEMALKDP 108
V++ A LE F + + FT + SLD+D+ G A+++ L +
Sbjct: 117 VDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQTMLLER 176
Query: 109 GKYVLKPQREGGGNNIYGDLIPEVGHMLRSK 139
+ +P E ++ L+ V LR++
Sbjct: 177 SRVARRPNGETNF-VVFSQLLAGVDGDLRTE 206
>gnl|CDD|220133 pfam09177, Syntaxin-6_N, Syntaxin 6, N-terminal. Members of this
family, which are found in the amino terminus of various
SNARE proteins, adopt a structure consisting of an
antiparallel three-helix bundle. Their exact function
has not been determined, though it is known that they
regulate the SNARE motif, as well as mediate various
protein-protein interactions involved in
membrane-transport.
Length = 96
Score = 26.8 bits (60), Expect = 2.8
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 50 YHLAGAKKVQQALAK-EGTLEKFLSDPN------QIQAVKEIFTGL----WSLDYDKEGD 98
+ +VQ+++ K +L + + KE+ L W L+ + +
Sbjct: 3 FFEV-KDEVQKSIDKLRSLYRSWLRIRSDSNSPELDELTKELRNALESIEWDLE---DLE 58
Query: 99 AAVEMALKDPGKYVLKPQ 116
AV + +P K+ L +
Sbjct: 59 EAVSVVEANPEKFGLDEE 76
>gnl|CDD|226875 COG4469, CoiA, Competence protein CoiA-like family, contains a
predicted nuclease domain [General function
prediction only].
Length = 342
Score = 27.8 bits (62), Expect = 2.8
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 49 HYHLAGAKKVQQALAKEGT---LEKFLSDPNQI 78
HL G +++ Q L ++G LE +L + Q
Sbjct: 64 EEHLKGKRQLYQWLKRQGCKVELEPYLPEIKQR 96
>gnl|CDD|235154 PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.
Length = 552
Score = 27.8 bits (63), Expect = 2.9
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 22/62 (35%)
Query: 21 TPDHYYSQLEWDARLLMERSTAIKCPSIHYH--------------LAGAKKVQQALAKEG 66
TP+ Y Q+EW R L R + I S+H H +AGA +V EG
Sbjct: 218 TPNVYADQIEWMCRNLARRDSVIL--SLHPHNDRGTGVAAAELALMAGADRV------EG 269
Query: 67 TL 68
L
Sbjct: 270 CL 271
>gnl|CDD|179174 PRK00941, PRK00941, acetyl-CoA decarbonylase/synthase complex
subunit alpha; Validated.
Length = 781
Score = 27.6 bits (62), Expect = 3.3
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
Query: 74 DPNQIQAVKEIFTGLWS----LDYDKEGDAAVEMALKDPGKYVLKPQREGGG 121
D ++I ++++ +G LD +K G+ AV +A + P R+ G
Sbjct: 346 DVDEI--IEDLVSGKIPGALILDPEKVGEVAVRVAKA------VAPIRKAKG 389
>gnl|CDD|130765 TIGR01704, MTA/SAH-Nsdase,
5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase. This model represents the enzyme
5-methylthioadenosine/S-adenosylhomocysteine
nucleosidase which acts on its two substrates at the
same active site. This enzyme is involved in the
recycling of the components of S-adenosylmethionine
after it has donated one of its two non-ribose sulfur
ligands to an acceptor. In the case of
5-methylthioadenosine this represents the first step of
the methionine salvage pathway in bacteria. This enzyme
is widely distributed in bacteria, especially those that
lack adenosylhomocysteinase (EC 3.3.1.1). One clade of
bacteria including Agrobacterium, Mesorhizobium,
Sinorhizobium and Brucella includes sequences annotated
as MTA/SAH nucleotidase, but differs significantly in
homology and has no independent experimental evidence.
There are homologs of this enzyme in plants, some of
which score between trusted and noise cutoffs here, but
there is no experimental evidence to validate this
function at this time [Central intermediary metabolism,
Other, Purines, pyrimidines, nucleosides, and
nucleotides, Salvage of nucleosides and nucleotides].
Length = 228
Score = 27.0 bits (59), Expect = 4.1
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 59 QQALAKEGTLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDP 108
+ + F++ + ++ F +++ + A V P
Sbjct: 138 NAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVP 187
>gnl|CDD|187811 cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; signature gene for type III;
also known as Csm1 family.
Length = 650
Score = 27.3 bits (61), Expect = 4.2
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 52 LAGAKKVQQALAKEGTLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKD 107
A + LA E L + + N+ I T +W DY E+ ++
Sbjct: 454 FAYEADEYEELALEDELVR-IYSKNKPDTGDLIATKIWVGDYVPRNGDGKELTFEE 508
>gnl|CDD|233216 TIGR00970, leuA_yeast, 2-isopropylmalate synthase, yeast type. A
larger family of homologous proteins includes
homocitrate synthase, distinct lineages of
2-isopropylmalate synthase, several distinct,
uncharacterized, orthologous sets in the Archaea, and
other related enzymes. This model describes a family of
2-isopropylmalate synthases as found in yeasts and in a
minority of studied bacteria [Amino acid biosynthesis,
Pyruvate family].
Length = 564
Score = 26.8 bits (59), Expect = 5.5
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 21 TPDHYYSQLEWDARLLMERSTAIKCPSIHYH--------------LAGAKKVQQALAKEG 66
TP+ Y +E+ + + ER C S+H H LAGA +++ L G
Sbjct: 217 TPNVYADSIEYFSTNIAEREKV--CLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNG 274
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase.
Length = 412
Score = 26.7 bits (59), Expect = 6.3
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 65 EGTLEKFLSDPNQIQAVKEIFTGLWSL---DYDKEGDAAVEMALKDPGKYVLKPQREGGG 121
E +K+L Q+ V W+L DY + + A K G ++L Q+ G
Sbjct: 127 EAQKQKYLPSLAQLDTV-----ACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIG 181
Query: 122 NNIYGDLI 129
N+ + D++
Sbjct: 182 NSTFADVL 189
>gnl|CDD|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed.
Length = 874
Score = 26.6 bits (59), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 18 AGYTPDHYYSQLEWDARLLMERSTAIKCPSIH 49
+G+TPD Y ++ W L+ER + C S
Sbjct: 295 SGHTPDTYVEEVAWQG--LLER---LNCKSRS 321
>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model
represents the enzyme (UbiB) which catalyzes the first
hydroxylation step in the ubiquinone biosynthetic
pathway in bacteria. It is believed that the reaction is
2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This
model finds hits primarily in the proteobacteria. The
gene is also known as AarF in certain species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 437
Score = 26.5 bits (59), Expect = 7.3
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 5 YRDGSPVAVIYFRAGYTP-DHYYSQLEWDARLLMER 39
RD VA ++F AGY P D ++ E R + E
Sbjct: 324 NRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEP 359
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.407
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,543,855
Number of extensions: 783466
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 36
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)