RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4345
(161 letters)
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural
genomics, PSI, protein structure initiative; HET: ANP
3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4
d.142.1.6 PDB: 1m0t_A*
Length = 491
Score = 179 bits (454), Expect = 6e-55
Identities = 57/127 (44%), Positives = 81/127 (63%)
Query: 5 YRDGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAK 64
+AV+Y+R GYT Y S+ +W+ARL +E+S AIK P + L+G+KK+QQ L
Sbjct: 273 RDTEQEIAVVYYRTGYTTTDYTSEKDWEARLFLEKSFAIKAPDLLTQLSGSKKIQQLLTD 332
Query: 65 EGTLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNI 124
EG L K++SD + ++ + F ++ LD K G +AL +P KYVLKPQREGGGNN+
Sbjct: 333 EGVLGKYISDAEKKSSLLKTFVKIYPLDDTKLGREGKRLALSEPSKYVLKPQREGGGNNV 392
Query: 125 YGDLIPE 131
Y + IP
Sbjct: 393 YKENIPN 399
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS;
1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Length = 499
Score = 175 bits (445), Expect = 2e-53
Identities = 69/128 (53%), Positives = 91/128 (71%), Gaps = 4/128 (3%)
Query: 5 YRDGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAK 64
DG ++V+YFRAGYTP Y S+ EW ARLLME+S+AIKCP+I YHL G KK+QQ LAK
Sbjct: 283 SVDGQAISVVYFRAGYTPKDYPSESEWRARLLMEQSSAIKCPTISYHLVGTKKIQQELAK 342
Query: 65 EGTLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNI 124
G LE+F+ + + I ++ F GLWSL+ V+ A+++P +V+KPQREGGGNNI
Sbjct: 343 PGVLERFVENKDHIAKLRACFAGLWSLEDSD----IVKKAIENPELFVMKPQREGGGNNI 398
Query: 125 YGDLIPEV 132
YGD + E
Sbjct: 399 YGDELRET 406
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET:
ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Length = 474
Score = 172 bits (436), Expect = 2e-52
Identities = 66/128 (51%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 5 YRDGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAK 64
+ DG +AV+YFR GY P Y Q W+ARLL+ERS A KCP I LAG KKVQQ L++
Sbjct: 255 FVDGQEIAVVYFRDGYMPRQYSLQ-NWEARLLLERSHAAKCPDIATQLAGTKKVQQELSR 313
Query: 65 EGTLEKFLSD-PNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNN 123
G LE L P + ++ F GL+SLD +EGD A+ AL P ++VLKPQREGGGNN
Sbjct: 314 PGMLEMLLPGQPEAVARLRATFAGLYSLDVGEEGDQAIAEALAAPSRFVLKPQREGGGNN 373
Query: 124 IYGDLIPE 131
+YG+ + +
Sbjct: 374 LYGEEMVQ 381
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A
{Trypanosoma brucei}
Length = 562
Score = 160 bits (406), Expect = 2e-47
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 7 DGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEG 66
P+AV YFR+ Y P+ + + W ARL +ERS+AIKCPSI YHL KK+QQ L
Sbjct: 321 GHYPIAVAYFRSTYVPEDFPTDATWAARLSLERSSAIKCPSIPYHLLTFKKLQQLLCDVD 380
Query: 67 ---TLEKFLSDPNQIQAVKEIFTGLWSLDYDKEGDAAVEM----ALKDPGKYVLKPQREG 119
F D ++ ++ F +SL+ + G+ AVE L+ P ++VLKPQ EG
Sbjct: 381 RVLVPVAFCGDSDKAGLLQRHFVPQYSLNPKEVGEEAVEKVIHDVLQRPDQFVLKPQLEG 440
Query: 120 GGNNIYGDLIPEV 132
GGN + G+ + +
Sbjct: 441 GGNLLSGETMVKA 453
Score = 58.0 bits (139), Expect = 1e-10
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 131 EVGHMLRSKASTANEGGVAGGAGALDSPYLI 161
G+ +RSK + A++GGV G ALDS ++
Sbjct: 531 FAGYTVRSKPADADDGGVMAGVAALDSLAVV 561
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.049
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 33/124 (26%)
Query: 59 QQALAKEGTLEKFLSDPNQIQAVKEIFTGLWSL-DYDKEG-DAAVEMAL----------- 105
+ L+KE ++ + + + +F W+L +E VE L
Sbjct: 43 KSILSKE-EIDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 106 ----KDPG----KYVLKPQREGGGNNIYGDL---IPEVGHMLRSKASTAN-EGGVA---- 149
+ P Y+ + R N ++ + LR V
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 150 GGAG 153
G+G
Sbjct: 159 LGSG 162
Score = 29.4 bits (65), Expect = 0.65
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 48 IHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAVKEIFTGL-WSLDYDKEGDAAVEMALK 106
I +HL + + + D ++ K W+ LK
Sbjct: 477 IGHHLKNIEHPE----RMTLFRMVFLDFRFLEQ-KIRHDSTAWN---ASGSILNTLQQLK 528
Query: 107 DPGKYVLK--PQREGGGNNIYGDLIPEVG-HMLRSK 139
Y+ P+ E N I D +P++ +++ SK
Sbjct: 529 FYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSK 563
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.41
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 23/107 (21%)
Query: 61 ALAKE-GTLEKFLSDPNQIQAVKEIFT-GLW---SLDYDKEGDAAVEMALKDPGKYVLKP 115
ALA + + V+ +F G+ ++ D+ G + M +PG+
Sbjct: 1769 ALASLADVMS--IES-----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA-- 1819
Query: 116 QREGGGNNIYGDLIPEVGHMLRSKASTAN---EGG---VAGGAGALD 156
++ VG N E AG ALD
Sbjct: 1820 ---SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 29.0 bits (65), Expect = 0.74
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 22/62 (35%)
Query: 21 TPDHYYSQLEWDARLLMERSTAIKCPSIHYH--------------LAGAKKVQQALAKEG 66
TP+ Y +EW +R L R + I S+H H AGA ++ EG
Sbjct: 259 TPNVYADSIEWMSRNLANRESVIL--SLHPHNDRGTAVAAAELGFAAGADRI------EG 310
Query: 67 TL 68
L
Sbjct: 311 CL 312
>3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A
{Pseudoalteromonas haloplanktis}
Length = 280
Score = 25.7 bits (56), Expect = 8.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 3 PNYRDGSPVAVIYFRAGYTPDH 24
P + + V V+Y+ +G T
Sbjct: 37 PGASESNKVPVLYWLSGLTCTD 58
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR
structure initiative, midwest center for structural
genomic hydrolase; HET: MSE; 1.75A {Oleispira
antarctica} PDB: 3s8y_A
Length = 280
Score = 25.6 bits (56), Expect = 8.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 3 PNYRDGSPVAVIYFRAGYTPDH 24
P G+ V V+Y+ +G T
Sbjct: 39 PQASTGAKVPVLYWLSGLTCSD 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.407
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,650,171
Number of extensions: 154554
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 19
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)