RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4345
         (161 letters)



>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
           synthetase ATP-binding domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 373

 Score =  119 bits (299), Expect = 2e-33
 Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 32  DARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAVKEIFTGLWSL 91
           D+  L+ ++ A        + +  KK+QQ L  EG L K++SD  +  ++ + F  ++ L
Sbjct: 185 DSGYLLSKALAKAVE---SYKSQQKKIQQLLTDEGVLGKYISDAEKKSSLLKTFVKIYPL 241

Query: 92  DYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIPE 131
           D  K G     +AL +P KYVLKPQREGGGNN+Y + IP 
Sbjct: 242 DDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIPN 281



 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 131 EVGHMLRSKASTANEGGVAGGAGALDSPYL 160
             G +LRSK +T+NEGGVA G G LDS  L
Sbjct: 343 FSGSLLRSKFNTSNEGGVAAGFGCLDSIIL 372


>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
           synthetase ATP-binding domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 370

 Score =  104 bits (262), Expect = 4e-28
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 49  HYHLAGAKKVQQALAKEGTLEKFLS-DPNQIQAVKEIFTGLWSLDYDKEGDAAVEMALKD 107
                  KKVQQ L++ G LE  L   P  +  ++  F GL+SLD  +EGD A+  AL  
Sbjct: 194 WELYGSTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVGEEGDQAIAEALAA 253

Query: 108 PGKYVLKPQREGGGNNIYGDLIPE 131
           P ++VLKPQREGGGNN+YG+ + +
Sbjct: 254 PSRFVLKPQREGGGNNLYGEEMVQ 277



 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 48/132 (36%)

Query: 30  EWDARLLMERSTAIKCPSIHYHLAGAKKVQQALAKEGTLEKFLSDPNQIQAVKEIFTGLW 89
           E  + +LME+       +         +V Q +++ G    ++     +   K       
Sbjct: 287 ERASYILMEKIEPEPFENCLLRPGSPARVVQCISELGIFGVYVRQEKTLVMNKH------ 340

Query: 90  SLDYDKEGDAAVEMALKDPGKYVLKPQREGGGNNIYGDLIPEVGHMLRSKASTANEGGVA 149
                                                     VGH+LR+KA    +GGVA
Sbjct: 341 ------------------------------------------VGHLLRTKAIEHADGGVA 358

Query: 150 GGAGALDSPYLI 161
            G   LD+PY +
Sbjct: 359 AGVAVLDNPYPV 370


>d1m0wa1 c.30.1.4 (A:216-323) Eukaryotic glutathione synthetase,
           substrate-binding domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 108

 Score = 95.2 bits (237), Expect = 7e-27
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query: 7   DGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAGA 55
               +AV+Y+R GYT   Y S+ +W+ARL +E+S AIK P +   L+G+
Sbjct: 60  TEQEIAVVYYRTGYTTTDYTSEKDWEARLFLEKSFAIKAPDLLTQLSGS 108


>d2hgsa1 c.30.1.4 (A:202-303) Eukaryotic glutathione synthetase,
           substrate-binding domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 102

 Score = 92.4 bits (230), Expect = 7e-26
 Identities = 28/48 (58%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 7   DGSPVAVIYFRAGYTPDHYYSQLEWDARLLMERSTAIKCPSIHYHLAG 54
           DG  +AV+YFR GY P  Y  Q  W+ARLL+ERS A KCP I   LAG
Sbjct: 56  DGQEIAVVYFRDGYMPRQYSLQ-NWEARLLLERSHAAKCPDIATQLAG 102


>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 106

 Score = 28.6 bits (64), Expect = 0.15
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 50  YHLAGAKKVQQALAK-EGTLEKFLSDPN---------QIQAVKEIFTGLWSLDYD-KEGD 98
           + +    +VQ+A+   +G  +++                    E+   L S+++D ++ D
Sbjct: 4   FFVV-KGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLD 62

Query: 99  AAVEMALKDPGKYVLKPQ 116
             + +   +P K+ L   
Sbjct: 63  ETISIVEANPRKFNLDAT 80


>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium
           symbiosum [TaxId: 1512]}
          Length = 194

 Score = 24.5 bits (53), Expect = 6.6
 Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 74  DPNQ---IQAVKEIFTGLWSL--DYDKEGDAAVEMALKDP 108
             ++   +Q V+E+ + L  +   + +  + A+   +  P
Sbjct: 15  YADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIP 54


>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein
          NikA {Escherichia coli [TaxId: 562]}
          Length = 499

 Score = 24.4 bits (51), Expect = 9.4
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 66 GTLEKFLSDPNQIQAVKEIFTGLWSLDYD 94
          G L   L  PNQ+ A   ++  L     D
Sbjct: 13 GPLNPHLYTPNQMFAQSMVYEPLVKYQAD 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 631,377
Number of extensions: 27731
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 13
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.0 bits)