BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4347
(816 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 119/235 (50%), Positives = 163/235 (69%), Gaps = 4/235 (1%)
Query: 448 FIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTI 507
FIDM+ MF L+ +E +K+ A PL IEF +V+FSY D + +++FT+
Sbjct: 22 FIDMENMFDLLKEETEVKDLPGAGPLRF--QKGRIEFENVHFSYADG--RETLQDVSFTV 77
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP 567
G+++A+VG SG+GKSTI+RLL+RF++ ++G I IDG++I+ V SLR HI +VPQD
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137
Query: 568 VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627
VLF+DTI NI YG + +E AA+ A +H++I+ +P Y TQVGERGLKLSGGEKQ
Sbjct: 138 VLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQ 197
Query: 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTI 682
RVAIAR ILK I++ DEATS+LD+ E I +SL N+TTI +AHRLST+
Sbjct: 198 RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 174/541 (32%), Positives = 274/541 (50%), Gaps = 43/541 (7%)
Query: 149 YAVDELNTGIVSDGALLELTNATDALIASAT-SIILGYGIARICSSGFNELRNAVFASVA 207
YA+D G++++ AL TD + T +I + I I +R + +
Sbjct: 39 YAID----GVINNHAL-----TTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTS 89
Query: 208 QRSIRKIAKNVFLHLHNLDLAFHLNRQTG-ALSKIIDRGSRGINFVLSAMVFNIVPTIFE 266
+ + I K ++ HL L F+ N Q G +S++I+ + +F+L+ ++ NI
Sbjct: 90 NKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLM-NIWLDCIT 148
Query: 267 LALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRV---NMNKAENEAGNKAI 323
+ + SI+ + L ++ + I+ Y L++ + + R ++A E
Sbjct: 149 IIIALSIMFFLDVK----LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLH 204
Query: 324 DSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTS 383
+ + VK F E EA ++ + ALK + A Y AA+ T T
Sbjct: 205 ERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA--------YSFAAINTVTD 256
Query: 384 LATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYRE 443
+ G + L++ G++TVG L G L L PL L + +
Sbjct: 257 I-----GPIIVIGVGAYLAI--------SGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 444 VRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNL 503
+ Q+F M +F L+ ++ IKN A P+ I+ V+F Y D I ++
Sbjct: 304 LTQSFASMDRVFQLIDEDYDIKNGVGAQPI--EIKQGRIDIDHVSFQYNDNEAP-ILKDI 360
Query: 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563
N +I G++VA VG SG GKST+I L+ RF++ +G I IDG NI D SLR I +V
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420
Query: 564 PQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623
QD +LF DT+ NI G + + EE +EAAK+A+ H+ I+ P Y+T+VGERG+KLSG
Sbjct: 421 QQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480
Query: 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIK 683
G+KQR++IAR L N PIL+ DEATS+LD +E+ I +L S+++TT+ +AHRLSTI
Sbjct: 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT 540
Query: 684 H 684
H
Sbjct: 541 H 541
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 209 bits (532), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 166/509 (32%), Positives = 251/509 (49%), Gaps = 39/509 (7%)
Query: 181 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSK 240
+ILG R SGF + + V+ + ++ + +F H ++ + F TG L
Sbjct: 70 MILGLMFVR-GLSGFAS--SYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLS 126
Query: 241 IIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSL-LAVSCVGIYTAYTLS 299
I S + S + +IV E A I +L+ + + L L + V A+ +S
Sbjct: 127 RITYDSEQVAGATSRALVSIVR---EGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAIS 183
Query: 300 ITQWRTQFRV---NMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAA 356
R FR NM A + A L ++ V + ++ E R++ V Q
Sbjct: 184 FVSKR--FRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQT 241
Query: 357 LKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLT 416
+K L ++ S+A I S A+ + A+ + LT
Sbjct: 242 MK-------------------LVSAQSIADPVI--QMIASLALFAVLFLASVDSIRAELT 280
Query: 417 VGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLT 476
G +V +F L PL L SV E ++ QT+F LM E N V
Sbjct: 281 PGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERV-- 338
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
N ++ +DV F+Y K K S+++F+IP GK+VA+VG SGSGKSTI L RF++
Sbjct: 339 --NGEVDVKDVTFTYQGKE-KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395
Query: 537 NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIE-AAK 595
++G+I +DG ++ D L +LRRH A+V Q+ LF+DTI NI Y + + E IE AA+
Sbjct: 396 DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAAR 455
Query: 596 LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
A I P +T +GE G LSGG++QRVAIARA+L++ P+L+ DEATS+LD+ +
Sbjct: 456 QAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
Query: 656 ENNILSSLKTASRNKTTICIAHRLSTIKH 684
E I ++L +NKT + IAHRLSTI+
Sbjct: 516 ERAIQAALDELQKNKTVLVIAHRLSTIEQ 544
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/203 (51%), Positives = 142/203 (69%), Gaps = 1/203 (0%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
+IEF DVNFSY + R ++NF IP+G + A+VG +GSGKSTI +LLYRF++ G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-G 74
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADL 599
I I GKN+N + +S+R I IVPQD +LF++TI YNI YG + EE I+A K A L
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQL 134
Query: 600 HNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
++ I P ++T VG +G+KLSGGE+QR+AIAR +LK+ I++FDEATSSLDS TE
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194
Query: 660 LSSLKTASRNKTTICIAHRLSTI 682
+++ +N+T I IAHRLSTI
Sbjct: 195 QKAVEDLRKNRTLIIIAHRLSTI 217
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 219/412 (53%), Gaps = 22/412 (5%)
Query: 273 ILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETV 332
I+++ + +L+ ++ I +I + + F + +AG +++ + TV
Sbjct: 229 IVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTV 288
Query: 333 KYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQS 392
N ++E +RY +++ ++A + L ++FG Q NF
Sbjct: 289 VSLNGLRYELERYSTAVEEAKKAGVLKGLFLG-ISFGAMQAS-------------NF--- 331
Query: 393 AIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQ 452
+ L+ + G+L GD++ + SM LG G + A
Sbjct: 332 ----ISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAAS 387
Query: 453 TMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKS 512
++ ++ ++P I + + A + I +V+F+Y + I +N + AG++
Sbjct: 388 GIYEVLDRKPVIDSSSKAGRKDMKI-KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQT 446
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD 572
VA+VG SG GKSTII LL R+++ G I IDG ++ D++L+ LR+++A+V Q+P LF+
Sbjct: 447 VALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC 506
Query: 573 TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632
TI NI+ G + + EE + A K+A+ I PN Y T VG+RG +LSGG+KQR+AIA
Sbjct: 507 TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA 566
Query: 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
RA+++N IL+ DEATS+LD+ +E + +L A++ +TTI IAHRLSTI++
Sbjct: 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN 618
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 156/253 (61%), Gaps = 8/253 (3%)
Query: 434 LGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSN--ASIEFRDVNFSY 491
LGF S + E +A +F ++ K +K ++L L + F++V F+Y
Sbjct: 1031 LGFATSYFPEYAKATFAGGIIFGMLRK----ISKIDSLSLAGEKKKLYGKVIFKNVRFAY 1086
Query: 492 IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV 551
++ I L+F++ G+++A+VG SG GKST++ LL RF++ G I+IDG I +
Sbjct: 1087 PERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL 1146
Query: 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYG--DKSKSYEETIEAAKLADLHNSIIKWPNH 609
+ + R IAIV Q+P LF +I NI YG S + + EAA+LA++HN I + P
Sbjct: 1147 NPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEG 1206
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN 669
+ET+VG+RG +LSGG+KQR+AIARA+++N IL+ DEATS+LD+ +E + +L A
Sbjct: 1207 FETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREG 1266
Query: 670 KTTICIAHRLSTI 682
+T I IAHRL+T+
Sbjct: 1267 RTCIVIAHRLNTV 1279
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 248/486 (51%), Gaps = 40/486 (8%)
Query: 206 VAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIV---P 262
V+ + + + + +F H+ + +AF + TG L I S + S + +V
Sbjct: 92 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151
Query: 263 TIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRV---NMNKAENEAG 319
+I L ++ S++ L++ V + +++I +FR NM +
Sbjct: 152 SIIGLFIMMFYYSWQ-------LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVT 204
Query: 320 NKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALK 379
A L ++ V F ++ E R++ V K +K ++ + ++
Sbjct: 205 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA--------SSISDPIIQ 256
Query: 380 TSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGS 439
SLA +A F + M +LT G + +V + L PL L +
Sbjct: 257 LIASLALAFVLYAASFPSVMD-------------SLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 440 VYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRI 499
V + ++ QT+F ++ E K++ V+ + +EFR+V F+Y + +
Sbjct: 304 VNAQFQRGMAACQTLFAILDSEQE-KDEGKR---VIDRATGDLEFRNVTFTYPGREVPAL 359
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559
N+N IPAGK+VA+VG SGSGKSTI L+ RF++ + G I +DG ++ + L SLR
Sbjct: 360 -RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 560 IAIVPQDPVLFHDTILYNINYGDKSK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERG 618
+A+V Q+ LF+DT+ NI Y + S E+ EAA++A + I K N +T +GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478
Query: 619 LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHR 678
+ LSGG++QR+AIARA+L+++PIL+ DEATS+LD+ +E I ++L +N+T++ IAHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 679 LSTIKH 684
LSTI+
Sbjct: 539 LSTIEQ 544
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 144/485 (29%), Positives = 249/485 (51%), Gaps = 40/485 (8%)
Query: 206 VAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIV---P 262
V+ + + + + +F H+ + ++F + TG L I S + S + +V
Sbjct: 92 VSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151
Query: 263 TIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFR---VNMNKAENEAG 319
+I L ++ S++ L++ + + +++I +FR NM +
Sbjct: 152 SIIGLFIMMFYYSWQ-------LSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVT 204
Query: 320 NKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALK 379
A L ++ V F ++ E R++ V + +K ++ + ++
Sbjct: 205 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSA--------SSISDPIIQ 256
Query: 380 TSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGS 439
SLA +A F + M +LT G + +V + L PL L +
Sbjct: 257 LIASLALAFVLYAASFPSVMD-------------SLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 440 VYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRI 499
V + ++ QT+FT++ E K++ V+ + +EFR+V F+Y + +
Sbjct: 304 VNAQFQRGMAACQTLFTILDSEQE-KDEGKR---VIERATGDVEFRNVTFTYPGRDVPAL 359
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559
N+N IPAGK+VA+VG SGSGKSTI L+ RF++ + G I +DG ++ + L SLR
Sbjct: 360 -RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 560 IAIVPQDPVLFHDTILYNINYGDKSK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERG 618
+A+V Q+ LF+DT+ NI Y + S E+ EAA++A + I K N +T +GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 619 LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHR 678
+ LSGG++QR+AIARA+L+++PIL+ DEATS+LD+ +E I ++L +N+T++ IAHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 679 LSTIK 683
LSTI+
Sbjct: 539 LSTIE 543
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 155/540 (28%), Positives = 264/540 (48%), Gaps = 66/540 (12%)
Query: 168 TNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDL 227
TN T + T + LG +C + N +R + + QR + ++ ++F + ++
Sbjct: 51 TNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEV 110
Query: 228 AFHLNRQTGAL-------SKIIDRG-----SRGINFVLSA-----MVFNIVPTI--FELA 268
AF +TG L + ++ R S G+ A M+F + P + F L+
Sbjct: 111 AFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLS 170
Query: 269 LISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLIN 328
++ + S++AV IY Y +T+ TQ + +A A + + N
Sbjct: 171 VVPPV---------SIIAV----IYGRYLRKLTKV-TQ------DSLAQATQLAEERIGN 210
Query: 329 YETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLN 388
TV+ F E E ++Y + Q A K + F +A +
Sbjct: 211 VRTVRAFGKEMTEIEKYASKVDHVMQLARKEA-------FARAGF--------------- 248
Query: 389 FGQSAIFSTAMTLSMIF-AAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQA 447
FG + + + LS+++ + ++TVG+L F + + +G L S Y E+ +
Sbjct: 249 FGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKG 308
Query: 448 FIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTI 507
++ L+ +EP + + L + ++EF++V+F+Y + IF + + +I
Sbjct: 309 LGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSI 367
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP 567
P+G A+VG SGSGKST++ LL R ++P +G I +DG +I ++ LR I V Q+P
Sbjct: 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 568 VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSII---KWPNHYETQVGERGLKLSGG 624
+LF +I NI YG S E ++A++ N++ +P + T VGE+G+ LSGG
Sbjct: 428 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487
Query: 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
+KQR+AIARA+LKN IL+ DEATS+LD+ E + +L +T + IAHRLSTIK+
Sbjct: 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN 547
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 206/383 (53%), Gaps = 39/383 (10%)
Query: 312 NKAENEAGNK-AIDSLINYETVKYFNNE-KFEADRYEGVLKKYEQAALKTSTSLATLNFG 369
+K E E K A +++ N+ TV E KFE + + Y A K T +F
Sbjct: 882 DKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFT 941
Query: 370 KAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQ 429
+A + F +A F F A + +T ++++V +
Sbjct: 942 QAM--------------MYFSYAACFR--------FGAYLVTQQLMTFENVLLVFSAIVF 979
Query: 430 LSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKN------KANALPLVLTTSNASIE 483
+M +G + S + +A + + ++ K P I + K N L +++
Sbjct: 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNML-------EGNVQ 1032
Query: 484 FRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI 543
F V F+Y + + + L+ + G+++A+VG SG GKST+++LL RF++P AG++++
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 544 DGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK--SYEETIEAAKLADLHN 601
DGK I +++ LR + IV Q+P+LF +I NI YGD S+ SYEE + AAK A++H
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
I P+ Y T+VG++G +LSGG+KQR+AIARA+++ IL+ DEATS+LD+ +E +
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
+L A +T I IAHRLSTI++
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQN 1235
Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 154/493 (31%), Positives = 257/493 (52%), Gaps = 53/493 (10%)
Query: 207 AQRSIRKIAKNVFLHLHNLDLAFHLNRQTGAL-SKIIDRGSR---GINFVLSAMVFNIVP 262
A R I KI + F + N ++ + G L +++ D S+ GI + M F +
Sbjct: 136 AGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKI-GMFFQAMA 194
Query: 263 TIFELALISSILSYKCGSEFSLLAVSCV-----GIYTAYTLSITQWRTQFRVNMNKAENE 317
T F +I +K +LA+S V GI+ S T A +
Sbjct: 195 TFFGGFIIGFTRGWKL--TLVILAISPVLGLSAGIWAKILSSFTDKELH-------AYAK 245
Query: 318 AGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAA 377
AG A + L TV F +K E +RY L++ ++ +K + + A ++ G A
Sbjct: 246 AGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAIT-ANISMGAAFL---L 301
Query: 378 LKTSTSLATLNFGQSAI----FSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMP 433
+ S +LA +G S + +S L++ F+ + G +VG Q S
Sbjct: 302 IYASYALA-FWYGTSLVISKEYSIGQVLTVFFS---VLIGAFSVG----------QASPN 347
Query: 434 LGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKN--KANALPLVLTTSNASIEFRDVNFSY 491
+ + R A ++ F ++ +P+I + K+ P ++EF++++FSY
Sbjct: 348 I----EAFANARGAAYEV---FKIIDNKPSIDSFSKSGHKP---DNIQGNLEFKNIHFSY 397
Query: 492 IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV 551
+ +I LN + +G++VA+VG SG GKST ++L+ R ++P G + IDG++I +
Sbjct: 398 PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTI 457
Query: 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
++ LR I +V Q+PVLF TI NI YG + + +E +A K A+ ++ I+K P+ ++
Sbjct: 458 NVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD 517
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKT 671
T VGERG +LSGG+KQR+AIARA+++N IL+ DEATS+LD+ +E + ++L A +T
Sbjct: 518 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577
Query: 672 TICIAHRLSTIKH 684
TI IAHRLST+++
Sbjct: 578 TIVIAHRLSTVRN 590
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 128/383 (33%), Positives = 207/383 (54%), Gaps = 39/383 (10%)
Query: 312 NKAENEAGNK-AIDSLINYETVKYFNNE-KFEADRYEGVLKKYEQAALKTSTSLATLNFG 369
+K E E K A +++ N+ TV E KFE + + Y A K T +F
Sbjct: 882 DKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSF- 940
Query: 370 KAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQ 429
QA + S + A FG + MT + L++ + ++F
Sbjct: 941 ----TQAMMYFSYA-AAFRFGAYLVTQQLMTFENV---------------LLVFSAIVFG 980
Query: 430 LSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKN------KANALPLVLTTSNASIE 483
+M +G + S + +A + + ++ K P I + K N L +++
Sbjct: 981 -AMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNML-------EGNVQ 1032
Query: 484 FRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI 543
F V F+Y + + + L+ + G+++A+VG SG GKST+++LL RF++P AG++++
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 544 DGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK--SYEETIEAAKLADLHN 601
DGK I +++ LR + IV Q+P+LF +I NI YGD S+ SYEE + AAK A++H
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
I P+ Y T+VG++G +LSGG+KQR+AIARA+++ IL+ DEATS+LD+ +E +
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
+L A +T I IAHRLSTI++
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQN 1235
Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 154/493 (31%), Positives = 257/493 (52%), Gaps = 53/493 (10%)
Query: 207 AQRSIRKIAKNVFLHLHNLDLAFHLNRQTGAL-SKIIDRGSR---GINFVLSAMVFNIVP 262
A R I KI + F + N ++ + G L +++ D S+ GI + M F +
Sbjct: 136 AGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKI-GMFFQAMA 194
Query: 263 TIFELALISSILSYKCGSEFSLLAVSCV-----GIYTAYTLSITQWRTQFRVNMNKAENE 317
T F +I +K +LA+S V GI+ S T A +
Sbjct: 195 TFFGGFIIGFTRGWKL--TLVILAISPVLGLSAGIWAKILSSFTDKELH-------AYAK 245
Query: 318 AGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAA 377
AG A + L TV F +K E +RY L++ ++ +K + + A ++ G A
Sbjct: 246 AGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAIT-ANISMGAAFL---L 301
Query: 378 LKTSTSLATLNFGQSAI----FSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMP 433
+ S +LA +G S + +S L++ F+ + G +VG Q S
Sbjct: 302 IYASYALA-FWYGTSLVISKEYSIGQVLTVFFS---VLIGAFSVG----------QASPN 347
Query: 434 LGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKN--KANALPLVLTTSNASIEFRDVNFSY 491
+ + R A ++ F ++ +P+I + K+ P ++EF++++FSY
Sbjct: 348 I----EAFANARGAAYEV---FKIIDNKPSIDSFSKSGHKP---DNIQGNLEFKNIHFSY 397
Query: 492 IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV 551
+ +I LN + +G++VA+VG SG GKST ++L+ R ++P G + IDG++I +
Sbjct: 398 PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTI 457
Query: 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
++ LR I +V Q+PVLF TI NI YG + + +E +A K A+ ++ I+K P+ ++
Sbjct: 458 NVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD 517
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKT 671
T VGERG +LSGG+KQR+AIARA+++N IL+ DEATS+LD+ +E + ++L A +T
Sbjct: 518 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577
Query: 672 TICIAHRLSTIKH 684
TI IAHRLST+++
Sbjct: 578 TIVIAHRLSTVRN 590
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 154/540 (28%), Positives = 263/540 (48%), Gaps = 66/540 (12%)
Query: 168 TNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDL 227
TN T + T + LG +C + N +R + + QR + ++ ++F + ++
Sbjct: 82 TNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEV 141
Query: 228 AFHLNRQTGAL-------SKIIDRG-----SRGINFVLSA-----MVFNIVPTI--FELA 268
AF +TG L + ++ R S G+ A M+F + P + F L+
Sbjct: 142 AFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLS 201
Query: 269 LISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLIN 328
++ + S++AV IY Y +T+ TQ + +A A + + N
Sbjct: 202 VVPPV---------SIIAV----IYGRYLRKLTK-VTQ------DSLAQATQLAEERIGN 241
Query: 329 YETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLN 388
TV+ F E E ++Y + Q A K + F +A +
Sbjct: 242 VRTVRAFGKEMTEIEKYASKVDHVMQLARKEA-------FARAGF--------------- 279
Query: 389 FGQSAIFSTAMTLSMIF-AAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQA 447
FG + + + LS+++ + ++TVG+L F + + +G L S Y E+ +
Sbjct: 280 FGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKG 339
Query: 448 FIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTI 507
++ L+ +EP + + L + ++EF++V+F+Y + IF + + +I
Sbjct: 340 LGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSI 398
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP 567
P+G A+VG SGSGKST++ LL R ++P +G I +DG +I ++ LR I V Q+P
Sbjct: 399 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 568 VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSII---KWPNHYETQVGERGLKLSGG 624
+LF +I NI YG S E ++A++ N++ +P + T VGE+G+ LSGG
Sbjct: 459 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 518
Query: 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
+KQR+AIARA+LKN IL+ DEATS+LD+ E + +L +T + IAH LSTIK+
Sbjct: 519 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKN 578
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 3/288 (1%)
Query: 394 IFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQT 453
I + M + F + + + +G ++ L Q+ L +G++ + +A +
Sbjct: 256 IVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKR 315
Query: 454 MFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSV 513
+ ++ ++P I+ NAL L S+ F +V F Y + +T + S +NF++ G V
Sbjct: 316 VLEVLNEKPAIEEADNAL--ALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLV 372
Query: 514 AIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDT 573
A++G +GSGKST++ L+ R +P G + +D ++ V L LR HI+ VPQ+ VLF T
Sbjct: 373 AVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGT 432
Query: 574 ILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633
I N+ +G + + +E +EAAK+A +H+ II P Y+++V G SGG+KQR++IAR
Sbjct: 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492
Query: 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLST 681
A++K +L+ D+ TSS+D ITE IL LK ++ TT I ++ T
Sbjct: 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT 540
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 141/488 (28%), Positives = 234/488 (47%), Gaps = 29/488 (5%)
Query: 198 LRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMV 257
L+ + +++Q + ++ K +F L + + F G + + IN VL +
Sbjct: 96 LQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSI 155
Query: 258 FNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENE 317
I LA + I+ ++ SL+ +S V + T ++ ++ + +
Sbjct: 156 IQFFSGIVTLAG-AVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQ 214
Query: 318 AGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAA 377
+ + +K F E+ E ++++ V ++ K T KAQ
Sbjct: 215 LNGIIEEDISGLTVIKLFTREEKEMEKFDRV----NESLRKVGT--------KAQIFSGV 262
Query: 378 LKTSTSLAT-LNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGF 436
L ++ L F + F + L I +TVG + G Q + PL
Sbjct: 263 LPPLMNMVNNLGFALISGFGGWLALKDI----------ITVGTIATFIGYSRQFTRPLNE 312
Query: 437 LGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHT 496
L + + ++ A + +F ++ E K+ +A+ L IEF++V FSY DK
Sbjct: 313 LSNQFNMIQMALASAERIFEILDLEEE-KDDPDAVEL--REVRGEIEFKNVWFSY-DKK- 367
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K + ++ F I G+ VA+VG +GSGK+TI+ LL RF++ + G I +DG +I + SL
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 557 RRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGE 616
R I IV QD +LF T+ N+ YG+ + EE EAAKL + I P YET + +
Sbjct: 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
G LS G++Q +AI RA L N IL+ DEATS++D+ TE +I +++ KT+I IA
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
Query: 677 HRLSTIKH 684
HRL+TIK+
Sbjct: 548 HRLNTIKN 555
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 132/204 (64%), Gaps = 1/204 (0%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I FR++ F Y + I N+N +I G+ + IVG SGSGKST+ +L+ RF+ P G
Sbjct: 1 DITFRNIRFRY-KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
+ IDG ++ D + LRR + +V QD VL + +I+ NI+ + S E+ I AAKLA H
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I + Y T VGE+G LSGG++QR+AIARA++ N IL+FDEATS+LD +E+ I+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 661 SSLKTASRNKTTICIAHRLSTIKH 684
++ + +T I IAHRLST+K+
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKN 203
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 132/204 (64%), Gaps = 1/204 (0%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I FR++ F Y + I N+N +I G+ + IVG SGSGKST+ +L+ RF+ P G
Sbjct: 7 DITFRNIRFRY-KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
+ IDG ++ D + LRR + +V QD VL + +I+ NI+ + S E+ I AAKLA H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I + Y T VGE+G LSGG++QR+AIARA++ N IL+FDEATS+LD +E+ I+
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 661 SSLKTASRNKTTICIAHRLSTIKH 684
++ + +T I IAHRLST+K+
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKN 209
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 131/203 (64%), Gaps = 1/203 (0%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I FR++ F Y + I N+N +I G+ + IVG SGSGKST+ +L+ RF+ P G
Sbjct: 3 DITFRNIRFRY-KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
+ IDG ++ D + LRR + +V QD VL + +I+ NI+ + S E+ I AAKLA H
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I + Y T VGE+G LSGG++QR+AIARA++ N IL+FDEATS+LD +E+ I+
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 661 SSLKTASRNKTTICIAHRLSTIK 683
++ + +T I IAHRLST+K
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVK 204
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 131/203 (64%), Gaps = 1/203 (0%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I FR++ F Y + I N+N +I G+ + IVG +GSGKST+ +L+ RF+ P G
Sbjct: 3 DITFRNIRFRY-KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
+ IDG ++ D + LRR + +V QD VL + +I+ NI+ + S E+ I AAKLA H
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I + Y T VGE+G LSGG++QR+AIARA++ N IL+FDEATS+LD +E+ I+
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 661 SSLKTASRNKTTICIAHRLSTIK 683
++ + +T I IAHRLST+K
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVK 204
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 132/204 (64%), Gaps = 1/204 (0%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I FR++ F Y + I N+N +I G+ + IVG SGSGKST+ +L+ RF+ P G
Sbjct: 7 DITFRNIRFRY-KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
+ IDG ++ D + LRR + +V QD VL + +I+ NI+ + S E+ I AAKLA H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I + Y T VGE+G LSGG++QR+AIARA++ N IL+FD+ATS+LD +E+ I+
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 661 SSLKTASRNKTTICIAHRLSTIKH 684
++ + +T I IAHRLST+K+
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKN 209
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 131/204 (64%), Gaps = 1/204 (0%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I FR++ F Y + I N+N +I G+ + IVG SGSGKST+ +L+ RF+ P G
Sbjct: 1 DITFRNIRFRY-KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
+ IDG ++ D + LRR + +V QD VL + +I+ NI+ + S E+ I AAKLA H
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I + Y T VGE+G LSGG++QR+AIARA++ N IL+FDEATS+LD +E+ I+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 661 SSLKTASRNKTTICIAHRLSTIKH 684
++ + +T I IA RLST+K+
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKN 203
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 131/204 (64%), Gaps = 1/204 (0%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I FR++ F Y + I N+N +I G+ + IVG SGSGKST+ +L+ RF+ P G
Sbjct: 7 DITFRNIRFRY-KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
+ IDG ++ D + LRR + +V QD VL + +I+ NI+ + S E+ I AAKLA H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I + Y T VGE+G LSGG++QR+AIARA++ N IL+FDEATS+LD +E+ I+
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 661 SSLKTASRNKTTICIAHRLSTIKH 684
++ + +T I IA RLST+K+
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKN 209
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 127/199 (63%), Gaps = 3/199 (1%)
Query: 485 RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
R V+F+Y D +++I +++F +A G SG GKSTI LL RF++P AG I ID
Sbjct: 5 RHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 545 GKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-DKSKSYEETIEAAKLADLHNSI 603
G+ I+++ L++ R I V QD + TI N+ YG + + E+ + LA + +
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 604 IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663
P+ T+VGERG+K+SGG++QR+AIARA L+N IL+ DEAT+SLDS +E+ + +L
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 664 KTASRNKTTICIAHRLSTI 682
+ + +TT+ IAHRLSTI
Sbjct: 183 DSLMKGRTTLVIAHRLSTI 201
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 134 bits (336), Expect = 3e-31, Method: Composition-based stats.
Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 8/213 (3%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
++F+DV+F+Y + ++ L FT+ GK A+VG +GSGKST+ LL ++P G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-DKSKSYEETIEAAKLADLH 600
+DG+ + D L +A V Q+P+LF + NI YG ++ + EE A + H
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I +P Y+T+VGE G +LSGG++Q VA+ARA+++ +L+ D+ATS+LD+ + +
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQ 196
Query: 661 SSLKTASR--NKTTICIAHRLSTIKHLLGYKAH 691
L + ++T + I H+LS L +AH
Sbjct: 197 RLLYESPEWASRTVLLITHQLS-----LAERAH 224
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 130 bits (326), Expect = 4e-30, Method: Composition-based stats.
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 8/213 (3%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
++F+DV+F+Y + ++ L FT+ GK A+VG +GSGKST+ LL ++P G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-DKSKSYEETIEAAKLADLH 600
+DG+ + D L +A V Q+P+LF + NI YG ++ + EE A + H
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I +P Y+T+VGE G +LSGG++Q VA+ARA+++ +L+ D ATS+LD+ + +
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 661 SSLKTASR--NKTTICIAHRLSTIKHLLGYKAH 691
L + ++T + I +LS L +AH
Sbjct: 197 RLLYESPEWASRTVLLITQQLS-----LAERAH 224
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 129 bits (323), Expect = 9e-30, Method: Composition-based stats.
Identities = 70/206 (33%), Positives = 121/206 (58%), Gaps = 3/206 (1%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
++F+DV+F+Y ++ + L FT+ G+ A+VG +GSGKST+ LL ++P G +
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK-SYEETIEAAKLADLH 600
+DGK + + L R +A V Q+P +F ++ NI YG K + EE AA + H
Sbjct: 75 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 134
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I P Y+T+V E G +LSGG++Q VA+ARA+++ +L+ D+ATS+LD+ ++ +
Sbjct: 135 SFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 194
Query: 661 SSLKTASR--NKTTICIAHRLSTIKH 684
L + +++ + I LS ++
Sbjct: 195 QLLYESPERYSRSVLLITQHLSLVEQ 220
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 125 bits (314), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/213 (33%), Positives = 122/213 (57%), Gaps = 8/213 (3%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
++F+DV+F+Y + ++ L FT+ GK A+VG +GSGKST+ LL ++P G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-DKSKSYEETIEAAKLADLH 600
+DG+ + D L +A V Q+P+LF + NI YG ++ + EE A + H
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I +P Y+T+VGE G +L+ G++Q VA+ARA+++ +L+ D ATS+LD+ + +
Sbjct: 137 DFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 661 SSLKTASR--NKTTICIAHRLSTIKHLLGYKAH 691
L + ++T + I +LS L +AH
Sbjct: 197 RLLYESPEWASRTVLLITQQLS-----LAERAH 224
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 29/205 (14%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI---NDVD 552
T + +N++ +PAG+ ++G SG+GKST+IR + P G++ +DG+ + ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 76
Query: 553 LDSLRRHIAIVPQDPVLFHDTILY----------NINYGDKSKSYEETIEAAKLADLHNS 602
L RR I ++ Q L ++ N + + E + L D H+S
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 136
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
+P++ LSGG+KQRVAIARA+ N +L+ DEATS+LD T +IL
Sbjct: 137 ---YPSN-----------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182
Query: 663 LKTASR--NKTTICIAHRLSTIKHL 685
LK +R T + I H + +K +
Sbjct: 183 LKDINRRLGLTILLITHEMDVVKRI 207
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 24/211 (11%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
SI R+ F++ + + + F+IP G VA+VG G GKS+++ L + G
Sbjct: 3 SITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKS--YEETIEA-AKLA 597
+ I G +A VPQ + +D++ NI +G + + Y I+A A L
Sbjct: 62 VAIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLP 108
Query: 598 DLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITEN 657
DL P+ T++GE+G+ LSGG+KQRV++ARA+ N I +FD+ S++D+
Sbjct: 109 DLE----ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 658 NILSSL---KTASRNKTTICIAHRLSTIKHL 685
+I ++ K +NKT I + H +S + +
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQV 195
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 29/205 (14%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI---NDVD 552
T + +N++ +PAG+ ++G SG+GKST+IR + P G++ +DG+ + ++ +
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99
Query: 553 LDSLRRHIAIVPQDPVLFHDTILY----------NINYGDKSKSYEETIEAAKLADLHNS 602
L RR I ++ Q L ++ N + + E + L D H+S
Sbjct: 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
+P++ LSGG+KQRVAIARA+ N +L+ D+ATS+LD T +IL
Sbjct: 160 ---YPSN-----------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 663 LKTASR--NKTTICIAHRLSTIKHL 685
LK +R T + I H + +K +
Sbjct: 206 LKDINRRLGLTILLITHEMDVVKRI 230
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 36/203 (17%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL--- 556
N+N I G+ V+I+G SGSGKST++ ++ +P G +YID ND+D D L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 557 -RRHIAIVPQD----PVLFHDTILYNINY-----------GDKSKSYEETIEAAKLADLH 600
R I V Q P+L T L N+ G++ + + +E K+A+L
Sbjct: 81 RRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGEERR--KRALECLKMAELE 135
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
++ NH Q LSGG++QRVAIARA+ N PI++ D+ T +LDS T I+
Sbjct: 136 E---RFANHKPNQ-------LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 661 SSLKTASRN--KTTICIAHRLST 681
LK + KT + + H ++
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINV 208
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 3/208 (1%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
+ S + +D+ Y + I N++F+I G+ V ++G +GSGKST++ R
Sbjct: 13 IWPSGGQMTVKDLTAKYTEGGNA-ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71
Query: 535 EPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAA 594
G I IDG + + + L+ R+ ++PQ +F T N++ + + S +E + A
Sbjct: 72 N-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVA 129
Query: 595 KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654
L + I ++P + + + G LS G KQ + +AR++L IL+ DE ++ LD +
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 655 TENNILSSLKTASRNKTTICIAHRLSTI 682
T I +LK A + T I R+ +
Sbjct: 190 TYQIIRRTLKQAFADCTVILCEARIEAM 217
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 29/205 (14%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI---NDVD 552
T + +N++ +PAG+ ++G SG+GKST+IR + P G++ +DG+ + ++ +
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99
Query: 553 LDSLRRHIAIVPQDPVLFHDTILY----------NINYGDKSKSYEETIEAAKLADLHNS 602
L RR I + Q L ++ N + + E + L D H+S
Sbjct: 100 LTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
+P++ LSGG+KQRVAIARA+ N +L+ D+ATS+LD T +IL
Sbjct: 160 ---YPSN-----------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 663 LKTASR--NKTTICIAHRLSTIKHL 685
LK +R T + I H +K +
Sbjct: 206 LKDINRRLGLTILLITHEXDVVKRI 230
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 90.1 bits (222), Expect = 5e-18, Method: Composition-based stats.
Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 36/205 (17%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL--- 556
N+N I G+ V+I+G SGSGKST++ ++ +P G +YID ND+D D L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 557 -RRHIAIVPQD----PVLFHDTILYNINY-----------GDKSKSYEETIEAAKLADLH 600
R I V Q P+L T L N+ G++ + + +E K+A+L
Sbjct: 81 RRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGEERR--KRALECLKMAELE 135
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
++ NH Q LSGG++QRVAIARA+ N PI++ D+ T +LDS T I+
Sbjct: 136 E---RFANHKPNQ-------LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIM 185
Query: 661 SSLKTASRN--KTTICIAHRLSTIK 683
LK + KT + + H ++ +
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINVAR 210
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 104/187 (55%), Gaps = 22/187 (11%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559
+N+N I G+ +A++G SGSGKST++ + ++P +G IY D K++ +L R+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT--ELPPKDRN 76
Query: 560 IAIVPQDPVLF-HDTILYNINYG-DKSKSYEETI-----EAAKLADLHNSIIKWPNHYET 612
+ +V Q+ L+ H T+ NI + + K+ E I E AK+ LH I K N Y
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKM--LH--IDKLLNRYPW 132
Query: 613 QVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK-- 670
Q LSGG++QRVAIARA++K +L+ DE S+LD++ + + LK +
Sbjct: 133 Q-------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 671 TTICIAH 677
TT+ + H
Sbjct: 186 TTVYVTH 192
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 22/192 (11%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN--DVDLDSL 556
+ +N I G+ V ++G SGSGKST +R L + + G I IDG N+ D +L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 557 RRHIAIVPQDPVLF-HDTILYNINYGD-------KSKSYEETIEAAKLADLHNSIIKWPN 608
R + +V Q LF H T+L NI + K+ + +E L + +P+
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT-AS 667
LSGG+ QRVAIARA+ I++FDE TS+LD +LS +K A+
Sbjct: 159 -----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 668 RNKTTICIAHRL 679
T + + H +
Sbjct: 208 EGMTMVVVTHEM 219
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 22/192 (11%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN--DVDLDSL 556
+ +N I G+ V ++G SGSGKST +R L + + G I IDG N+ D +L+ +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 557 RRHIAIVPQDPVLF-HDTILYNINYGD-------KSKSYEETIEAAKLADLHNSIIKWPN 608
R + +V Q LF H T+L NI + K+ + +E L + +P+
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT-AS 667
LSGG+ QRVAIARA+ I++FDE TS+LD +LS +K A+
Sbjct: 138 -----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 668 RNKTTICIAHRL 679
T + + H +
Sbjct: 187 EGMTMVVVTHEM 198
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 70/203 (34%), Positives = 99/203 (48%), Gaps = 32/203 (15%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL--- 556
N+N I G+ V+I G SGSGKST + ++ +P G +YID ND+D D L
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 557 -RRHIAIVPQD----PVLFHDTILYNINY-------GDKS--KSYEETIEAAKLADLHNS 602
R I V Q P+L T L N+ G S + + +E K A+L
Sbjct: 81 RRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE- 136
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
++ NH Q LSGG++QRVAIARA+ N PI++ DE T +LDS T I
Sbjct: 137 --RFANHKPNQ-------LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQL 187
Query: 663 LKTASRN--KTTICIAHRLSTIK 683
LK + KT + + H ++ +
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVAR 210
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 19/184 (10%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559
NL+ + +G+ I+G +G+GK+ + L+ F P++G I +DGK++ D L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD--LSPEKHD 73
Query: 560 IAIVPQDPVLF-HDTILYNINYG---DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG 615
IA V Q+ LF H + N+ +G K K + ++ A+ + + + + P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-------- 125
Query: 616 ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTIC 674
L LSGGE+QRVA+ARA++ N IL+ DE S+LD T+ N L +NK T+
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 675 -IAH 677
I H
Sbjct: 183 HITH 186
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 14/190 (7%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
+IEF V I R ++F I G+ V ++G SGSGK+TI+RL+ P G
Sbjct: 14 TIEF--VGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADL 599
++I GK + DL +R++ +V Q+ LF H T+ N+++G + K + A++ +L
Sbjct: 72 VWIGGKRVT--DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL 129
Query: 600 HNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+ E+ +LSGG++QRVA+ARA+ +L+FDE +++D+ I
Sbjct: 130 LRFM-----RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT----QI 180
Query: 660 LSSLKTASRN 669
L+T R
Sbjct: 181 RRELRTFVRQ 190
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 20/160 (12%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560
++F + G+ VA++G SG GK+T + +L ++P +G IY D +ND+ R +
Sbjct: 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP--PKYREV 77
Query: 561 AIVPQDPVLF-HDTILYNINYG------DKSKSYEETIEAAKLADLHNSIIKWPNHYETQ 613
+V Q+ L+ H T+ NI + K + + +E A+ + N + + P
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT----- 132
Query: 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+LSGG++QRVA+ARA++K +L+FDE S+LD+
Sbjct: 133 ------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
+V+FS++ + N+N I G+ +AI G +GSGK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 546 KNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
+ ++ Q + TI NI +G Y K L I K
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYK-SVVKACQLQQDITK 145
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665
+ T +GE G+ LSGG++ R+++ARA+ K+ + + D LD TE + S
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 666 A-SRNKTTICIAHRLSTIK 683
NKT I + ++ ++
Sbjct: 206 KLMANKTRILVTSKMEHLR 224
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
+V+FS++ + N+N I G+ +AI G +GSGK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 546 KNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
+ ++ Q + TI NI +G Y K L I K
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYK-SVVKACQLQQDITK 145
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665
+ T +GE G+ LSGG++ R+++ARA+ K+ + + D LD TE + S
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 666 A-SRNKTTICIAHRLSTIK 683
NKT I + ++ ++
Sbjct: 206 KLMANKTRILVTSKMEHLR 224
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 15/199 (7%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
+V+FS++ + N+N I G+ +AI G +GSGK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 546 KNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
+ ++ Q + TI NI G Y K L I K
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIRGVSYDEYRYK-SVVKACQLQQDITK 145
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665
+ T +GE G+ LSGG++ R+++ARA+ K+ + + D LD TE + S
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 666 A-SRNKTTICIAHRLSTIK 683
NKT I + ++ ++
Sbjct: 206 KLMANKTRILVTSKMEHLR 224
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 15/199 (7%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
+V+FS++ + N+N I G+ +AI G +GSGK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 546 KNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
+ ++ Q + TI NI G Y K L I K
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIISGVSYDEYRYK-SVVKACQLQQDITK 145
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665
+ T +GE G+ LSGG++ R+++ARA+ K+ + + D LD TE + S
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 666 A-SRNKTTICIAHRLSTIK 683
NKT I + ++ ++
Sbjct: 206 KLMANKTRILVTSKMEHLR 224
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 465 KNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKS 524
K + L LTT+ +E +V ++ ++ + ++NF I G+ +A+ G +G+GK+
Sbjct: 4 KQEYKTLEYNLTTTEVVME--NVT-AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKT 60
Query: 525 TIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG--- 581
+++ ++ EP+ G I G+ I+ Q + TI NI +G
Sbjct: 61 SLLMMIMGELEPSEGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSY 107
Query: 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641
D+ + Y I+A +L + I K+ +GE G+ LSGG++ R+++ARA+ K+ +
Sbjct: 108 DEYR-YRSVIKACQLEE---DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 163
Query: 642 LVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIK 683
+ D LD +TE I S NKT I + ++ +K
Sbjct: 164 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 206
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558
+ ++NF I G+ +A+ G +G+GK++++ ++ EP+ G I G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 559 HIAIVPQDPVLFHDTILYNINYG---DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG 615
I+ Q + TI NI +G D+ + Y I+A +L + I K+ +G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFGVSYDEYR-YRSVIKACQLEE---DISKFAEKDNIVLG 125
Query: 616 ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL-SSLKTASRNKTTIC 674
E G+ LSGG++ R+++ARA+ K+ + + D LD +TE I S + NKT I
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 675 IAHRLSTIK 683
+ ++ +K
Sbjct: 186 VTSKMEHLK 194
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 488 NFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN 547
NF+ ++K LN TI G+ + ++G SG GK+T +R++ EP G IY ++
Sbjct: 24 NFTAVNK--------LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD 75
Query: 548 INDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSY--EETIEAAKLADLHNSII 604
+ L R+I++V Q ++ H T+ NI + K K + +E + + A I
Sbjct: 76 VTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE 133
Query: 605 KWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK 664
+ N Y Q LSGG++QRVA+ARAI+ +L+ DE S+LD+ + + +K
Sbjct: 134 ELLNRYPAQ-------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 186
Query: 665 TASR--NKTTICIAH 677
+ TTI + H
Sbjct: 187 KLQQKLKVTTIYVTH 201
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 488 NFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN 547
NF+ ++K LN TI G+ + ++G SG GK+T +R++ EP G IY ++
Sbjct: 23 NFTAVNK--------LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD 74
Query: 548 INDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSY--EETIEAAKLADLHNSII 604
+ L R+I++V Q ++ H T+ NI + K K + +E + + A I
Sbjct: 75 VTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE 132
Query: 605 KWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK 664
+ N Y Q LSGG++QRVA+ARAI+ +L+ DE S+LD+ + + +K
Sbjct: 133 ELLNRYPAQ-------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 185
Query: 665 TASR--NKTTICIAH 677
+ TTI + H
Sbjct: 186 KLQQKLKVTTIYVTH 200
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 21/209 (10%)
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
TSN NFS + + ++NF I G+ +A+ G +G+GK++++ ++ EP
Sbjct: 34 TSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90
Query: 537 NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNI-NYGDKSKSYEETIEAAK 595
+ G I G+ I+ Q+ + TI NI Y I+A +
Sbjct: 91 SEGKIKHSGR-------------ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ 137
Query: 596 LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
L + I K+ +GE G+ LSGG++ R+++ARA+ K+ + + D LD +T
Sbjct: 138 LEE---DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
Query: 656 ENNILSSLKTA-SRNKTTICIAHRLSTIK 683
E I S NKT I + ++ +K
Sbjct: 195 EKEIFESCVCKLMANKTRILVTSKMEHLK 223
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 24/211 (11%)
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
TSN NFS + + ++NF I G+ +A+ G +G+GK++++ ++ EP
Sbjct: 34 TSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90
Query: 537 NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG---DKSKSYEETIEA 593
+ G I G+ I+ Q + TI NI G D+ + Y I+A
Sbjct: 91 SEGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIAGVSYDEYR-YRSVIKA 136
Query: 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+L + I K+ +GE G+ LSGG++ R+++ARA+ K+ + + D LD
Sbjct: 137 CQLEE---DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
Query: 654 ITENNILSSLKTA-SRNKTTICIAHRLSTIK 683
+TE I S NKT I + ++ +K
Sbjct: 194 LTEKEIFESCVCKLMANKTRILVTSKMEHLK 224
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 21/209 (10%)
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
TSN NFS + + ++NF I G+ +A+ G +G+GK++++ ++ EP
Sbjct: 34 TSNGDDSLFFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90
Query: 537 NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNI-NYGDKSKSYEETIEAAK 595
+ G I G+ I+ Q+ + TI NI Y I+A +
Sbjct: 91 SEGKIKHSGR-------------ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ 137
Query: 596 LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
L + I K+ +GE G+ LSGG++ R+++ARA+ K+ + + D LD +T
Sbjct: 138 LEE---DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
Query: 656 ENNILSSLKTA-SRNKTTICIAHRLSTIK 683
E I S NKT I + ++ +K
Sbjct: 195 EKEIFESCVCKLMANKTRILVTSKMEHLK 223
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 20/201 (9%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
+V+FS++ + N+N I G+ +AI G +GSGK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 546 KNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEET--IEAAKLADLHNSI 603
+ ++ Q + TI NI SY+E K L I
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENI----IGVSYDEYRYKSVVKACQLQQDI 142
Query: 604 IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663
K+ T +GE G+ LSGG++ R+++ARA+ K+ + + D LD TE + S
Sbjct: 143 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 202
Query: 664 KTA-SRNKTTICIAHRLSTIK 683
NKT I + ++ ++
Sbjct: 203 VCKLMANKTRILVTSKMEHLR 223
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 22/177 (12%)
Query: 488 NFSYIDKHTKRI-FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK 546
N S + K K + N+N I G+ I+G SG+GK+T +R++ P+ G +Y D +
Sbjct: 8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67
Query: 547 NI---NDVDLDSLRRHIAIVPQDPVLFHD-TILYNINYG------DKSKSYEETIEAAKL 596
+ + + R I +V Q L+ + T NI + K + + E AK+
Sbjct: 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127
Query: 597 ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
D+H+ + NH+ + LSGG++QRVA+ARA++K+ +L+ DE S+LD+
Sbjct: 128 LDIHHVL----NHFPRE-------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDA 173
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 503 LNFTIPAGKSVAIV-GGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
LN G+ ++ G +G+GKS + L+ +P+ G + ++G +I L RR I
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIG 73
Query: 562 IVPQDPVLF-HDTILYNINYGDKSKSYEETIE-----AAKLADLHNSIIKWPNHYETQVG 615
VPQD LF H ++ NI YG ++ E A KL H +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH------------LLD 121
Query: 616 ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR 668
+ +LSGGE+QRVA+ARA++ +L+ DE S++D T+ ++ L+ R
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558
+ ++NF I G+ +A+ G +G+GK++++ ++ EP+ G I G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 559 HIAIVPQDPVLFHDTILYNI-NYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
I+ Q + TI NI Y I+A +L + I K+ +GE
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEE---DISKFAEKDNIVLGEG 126
Query: 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIA 676
G+ LSGG++ R+++ARA+ K+ + + D LD +TE I S NKT I +
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 677 HRLSTIK 683
++ +K
Sbjct: 187 SKMEHLK 193
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 22/188 (11%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI---NDVDLDS 555
I ++ ++ G+ V+I+G SGSGKST++ +L P G ++++GK + N+ +L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 556 LR-RHIAIVPQ------DPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPN 608
LR R + V Q + + I+ + G K +E E L++L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-LSEL--------- 128
Query: 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF-DEATSSLDSITENNILSSLKTAS 667
++ + +LSGGE+QRVAIARA L N PIL+F DE T +LDS ++ +
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARA-LANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 668 RNKTTICI 675
T+I +
Sbjct: 188 EGGTSIVM 195
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 134/298 (44%), Gaps = 37/298 (12%)
Query: 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN--- 537
I D+ Y+ + T + ++ I AIVG S SGKSTII + + PN
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 538 -AGAIYIDGKNINDVDLDSLRR----HIAIVPQ------DPVL-----FHDTILYNINYG 581
+G + GK++ + + LR+ IA+VPQ +P + F DT+ +
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641
S+ E+ E ++ L+ E + L+LSGG KQRV IA A+L + +
Sbjct: 125 SHSELIEKASEKLRMVRLNP---------EAVLNSYPLQLSGGMKQRVLIALALLLDPVV 175
Query: 642 LVFDEATSSLDSITENNILSSLKTASRNK--TTICIAHRLSTIKHLLGYKAHRKTSTNLV 699
L+ DE TS+LD +T+ +I+ LK + T I + H ++ L K NLV
Sbjct: 176 LILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAE-LADKVAVIYGGNLV 234
Query: 700 RGNSS-AMRSMSLSRFSQVHLNRYLHTSS-AAYVGNKQGDKPSPSTLIKTQKRNCFHP 755
NS+ + L +++ +N + ++ + V GD PS L+ FHP
Sbjct: 235 EYNSTFQIFKNPLHPYTRGLINSIMAVNADMSKVKPIPGDPPS---LLNPPSGCRFHP 289
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 24/189 (12%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD----LDSLR 557
++ + G+ + ++G SG GK+T +R++ EP+ G IYI K + D + +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80
Query: 558 RHIAIVPQDPVLF-HDTILYNINYGDKSKSY------EETIEAAKLADLHNSIIKWPNHY 610
R IA+V Q L+ H T+ NI + K + + E A+L L + + P
Sbjct: 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR-- 138
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-- 668
+LSGG++QRVA+ RAI++ + + DE S+LD+ + + LK R
Sbjct: 139 ---------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189
Query: 669 NKTTICIAH 677
TTI + H
Sbjct: 190 GVTTIYVTH 198
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558
+ ++NF I G+ +A+ G +G+GK++++ ++ EP+ G I G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 559 HIAIVPQDPVLFHDTILYNINYG---DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG 615
I+ Q + TI NI +G D+ + Y I+A +L + I K+ +G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFGVSYDEYR-YRSVIKACQLEE---DISKFAEKDNIVLG 155
Query: 616 ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTIC 674
E G+ LS G++ ++++ARA+ K+ + + D LD +TE I S NKT I
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 675 IAHRLSTIK 683
+ ++ +K
Sbjct: 216 VTSKMEHLK 224
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 22/177 (12%)
Query: 488 NFSYIDKHTKRI-FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK 546
N S + K K + N+N I G+ I+G SG+GK+T +R++ P+ G +Y D +
Sbjct: 8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67
Query: 547 NI---NDVDLDSLRRHIAIVPQDPVLFHD-TILYNINYG------DKSKSYEETIEAAKL 596
+ + + R I +V Q L+ + T NI + K + + E AK+
Sbjct: 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127
Query: 597 ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
D+H+ + NH+ + LSG ++QRVA+ARA++K+ +L+ DE S+LD+
Sbjct: 128 LDIHHVL----NHFPRE-------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K+ N++ I G+ + + G +GSGKST+++++ EP +G + DG+ + +
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---I 78
Query: 557 RRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQV 614
RR+I I Q P F + + + + K++ + L + +++
Sbjct: 79 RRNIGIAFQYPEDQFFAERVFDEVAFA--VKNFYPDRDPVPLVKKAMEFVGL--DFDSFK 134
Query: 615 GERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL-KTASRNKTTI 673
LSGGEK+RVAIA I+ IL+ DE LD + ++L + K + KT I
Sbjct: 135 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 194
Query: 674 CIAHRLSTI 682
I+H + T+
Sbjct: 195 LISHDIETV 203
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K+ N++ I G+ + + G +GSGKST+++++ EP +G + DG+ + +
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---I 76
Query: 557 RRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQV 614
RR+I I Q P F + + + + K++ + L + +++
Sbjct: 77 RRNIGIAFQYPEDQFFAERVFDEVAFA--VKNFYPDRDPVPLVKKAMEFVGL--DFDSFK 132
Query: 615 GERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL-KTASRNKTTI 673
LSGGEK+RVAIA I+ IL+ DE LD + ++L + K + KT I
Sbjct: 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 192
Query: 674 CIAHRLSTI 682
I+H + T+
Sbjct: 193 LISHDIETV 201
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 24/213 (11%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
++ + ++ ++N++Y D +N I G+ AI+GG+G GKST+ +
Sbjct: 1 MSLEDYILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58
Query: 535 EPNAGAIYIDGKNIN--DVDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEET 590
+P++G I D K I+ + LR I IV QDP LF ++ ++++G
Sbjct: 59 KPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG--------- 109
Query: 591 IEAAKLADLHNSIIKWPNHYETQVGERGLK------LSGGEKQRVAIARAILKNTPILVF 644
A + + I K ++ + G LK LS G+K+RVAIA ++ +L+
Sbjct: 110 --AVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167
Query: 645 DEATSSLDSITENNILSSLKTASRN-KTTICIA 676
DE T+ LD + + I+ L + TI IA
Sbjct: 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA 200
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 20/203 (9%)
Query: 490 SYIDKHTKR--IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN 547
S++ H ++ + ++++ I +G+ VAI+G +G+GKST++RLL + P+ G ++ G+N
Sbjct: 15 SHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74
Query: 548 INDVDLDSLRRHIAIVPQ-DPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKW 606
+N +L R A++ Q + F ++ I G + +A + +
Sbjct: 75 LNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA- 133
Query: 607 PNHYETQVGERGLK-LSGGEKQRVAIARAIL-----KNTPILVF-DEATSSLDSITENNI 659
+ +R + LSGGE+QRV +AR + + TP +F DE TS+LD + +
Sbjct: 134 -------LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHT 186
Query: 660 LSSLKTASRNK--TTICIAHRLS 680
L L+ +R + C+ H L+
Sbjct: 187 LRLLRQLTRQEPLAVCCVLHDLN 209
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 30/192 (15%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----VDLDSLR 557
+L+ I G+ + ++G SG GK+T +R + EP G IYI+ + D V +
Sbjct: 24 DLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKE 83
Query: 558 RHIAIVPQDPVLF-HDTILYNINYGDK---------SKSYEETIEAAKLADLHNSIIKWP 607
R +A V Q L+ H T+ NI + K K E E L +L N
Sbjct: 84 RDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNR----- 138
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667
+ +LSGG++QRVA+ RAI++ + + DE S+LD+ + LK
Sbjct: 139 ---------KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 668 RN--KTTICIAH 677
R TTI + H
Sbjct: 190 RQLGVTTIYVTH 201
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 35/217 (16%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE V+F Y + + ++N GK +VG +GSGK+T++++L AG I
Sbjct: 12 IELNSVSFRY---NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA-AGEI 67
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDP------------VLFHDTILYNINYGDKSKSYEE 589
++DG + D LR+++ V Q+P V F I+ ++ + K ++
Sbjct: 68 FLDG---SPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIM-GLDESEMRKRIKK 123
Query: 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
+E L+ L + L LSGG+KQR+AIA + ++T L DE S
Sbjct: 124 VLELVGLSGLAAA--------------DPLNLSGGQKQRLAIASMLARDTRFLALDEPVS 169
Query: 650 SLDSITENNILSSLKT-ASRNKTTICIAHRLSTIKHL 685
LD ++ I L++ + K I + H L + +
Sbjct: 170 MLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDM 206
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 41/214 (19%)
Query: 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
N ++ ++ F Y + +F LNF + G +A++G +G GKST++ LL P
Sbjct: 2 NKALSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 539 GAIYIDGKNINDVDLDSLRRHIAIVPQ-----------DPVLFHDTILYNINYGDKSKSY 587
G I + + I VPQ D VL + N KS Y
Sbjct: 60 GKI-------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106
Query: 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGL-KLSGGEKQRVAIARAILKNTPILVFDE 646
+ ++A +L T + +R LSGG++Q + IARAI +++ DE
Sbjct: 107 QVAMQALDYLNL------------THLAKREFTSLSGGQRQLILIARAIASECKLILLDE 154
Query: 647 ATSSLDSITENNILSSL--KTASRNKTTICIAHR 678
TS+LD ++ +LS L S+N T + H+
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 50/199 (25%), Positives = 99/199 (49%), Gaps = 24/199 (12%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K I ++F I G+ ++G +G+GK+T +R++ +P++G + + GKN+ + + +
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEV 86
Query: 557 RRHIAIVPQDPVLFHDTILYNIN--------YGDKSKSYEETIE-AAKLADLHNSIIKWP 607
R+ I+ +P++ + + + I Y S EE +E A ++A L
Sbjct: 87 RKLISYLPEEAGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE------ 138
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667
++ +R S G +++ IARA++ N + + DE TS LD + + LK AS
Sbjct: 139 -----KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 668 RNKTTICI-AHRLSTIKHL 685
+ TI + +H + ++ L
Sbjct: 194 QEGLTILVSSHNMLEVEFL 212
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558
+ ++NF I G+ +A+ G +G+GK++++ ++ EP+ G I G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 559 HIAIVPQDPVLFHDTILYNI-NYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
I+ Q + TI NI Y I+A +L + I K+ +GE
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEE---DISKFAEKDNIVLGEG 156
Query: 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIA 676
G+ LS G++ ++++ARA+ K+ + + D LD +TE I S NKT I +
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 677 HRLSTIK 683
++ +K
Sbjct: 217 SKMEHLK 223
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 89/178 (50%), Gaps = 7/178 (3%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH-IA 561
++ +P G+ V ++G +G+GK+T + + G I +G++I + + R IA
Sbjct: 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIA 84
Query: 562 IVPQDPVLFHDTILY-NINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLK 620
+VP+ +F + +Y N+ G ++ +E I+ DL +P E ++ + G
Sbjct: 85 LVPEGRRIFPELTVYENLXXGAYNRKDKEGIKR----DLEWIFSLFPRLKE-RLKQLGGT 139
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHR 678
LSGGE+Q +AI RA+ +L DE + L I + + ++ ++ TTI + +
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 23/181 (12%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
AS++ ++V ++ + + ++N I G+ V VG SG GKST++R++ +G
Sbjct: 2 ASVQLQNVTKAWGEVVVSK---DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-SKSYEETI-----E 592
++I K +ND R + +V Q L+ H ++ N+++G K + + +E I +
Sbjct: 59 DLFIGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ 116
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
A++ L + + + P LSGG++QRVAI R ++ + + DE S+LD
Sbjct: 117 VAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 653 S 653
+
Sbjct: 166 A 166
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 23/181 (12%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
AS++ ++V ++ + + ++N I G+ V VG SG GKST++R++ +G
Sbjct: 2 ASVQLQNVTKAWGEVVVSK---DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-SKSYEETI-----E 592
++I K +ND R + +V Q L+ H ++ N+++G K + + +E I +
Sbjct: 59 DLFIGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ 116
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
A++ L + + + P LSGG++QRVAI R ++ + + DE S+LD
Sbjct: 117 VAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 653 S 653
+
Sbjct: 166 A 166
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 32/218 (14%)
Query: 492 IDKHTK----RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN 547
ID H + + ++ AG ++I+G SGSGKST +R + +P+ GAI ++G+N
Sbjct: 10 IDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN 69
Query: 548 INDV-------------DLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEA 593
IN V L LR + +V Q L+ H T+L N+ E I+
Sbjct: 70 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV--------MEAPIQV 121
Query: 594 AKLA--DLHNSIIKWPNHY---ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
L+ D +K+ E G+ + LSGG++QRV+IARA+ +L+FDE T
Sbjct: 122 LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 181
Query: 649 SSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIKHL 685
S+LD +L ++ A KT + + H + +H+
Sbjct: 182 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 219
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 22/190 (11%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI--NDVDLDSL 556
+ ++++ ++ G+ + I+G SG GK+T++R L F +P++G I + GK I + +L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 557 RRHIAIVPQDPVLF-HDTILYNINYG---DKSKSYEE--TIEAA-KLADLHNSIIKWPNH 609
R + + Q+ VLF H T+ NI YG K ++ +E IEA +L + ++P+
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH- 137
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR- 668
+LSGG++QR A+ARA+ + +++ DE S+LD I + A R
Sbjct: 138 ----------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA 187
Query: 669 -NKTTICIAH 677
K+ + ++H
Sbjct: 188 NGKSAVFVSH 197
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 93/181 (51%), Gaps = 23/181 (12%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
AS++ ++V ++ + + ++N I G+ V VG SG GKST++R++ +G
Sbjct: 2 ASVQLQNVTKAWGEVVVSK---DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-SKSYEETI-----E 592
++I K +ND R + +V Q L+ H ++ N+++G K + + +E I +
Sbjct: 59 DLFIGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ 116
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
A++ L + + + P LSGG++QRVAI R ++ + + D+ S+LD
Sbjct: 117 VAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
Query: 653 S 653
+
Sbjct: 166 A 166
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 32/214 (14%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557
+ ++ ++ G I+G +GSGKST+I ++ F + + G +Y + K+I + + L
Sbjct: 21 KALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL- 79
Query: 558 RHIAIV-----PQ---DPVLFHDTILYNINYGDKS----------KSYEETIEAA-KLAD 598
H IV PQ + + + ++ IN G+ EE +E A K+ +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 599 LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENN 658
+K + Y+ + GE LSGG+ + V I RA++ N ++V DE + + ++
Sbjct: 140 F----LKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 659 ILSS-LKTASRNKTTICIAHRLSTIKHLLGYKAH 691
I + L+ ++ T + I HRL + L Y H
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIV---LNYIDH 222
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 32/214 (14%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557
+ ++ ++ G I+G +GSGKST+I ++ F + + G +Y + K+I + + L
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL- 79
Query: 558 RHIAIVP--QDPVLFHD-TILYNINYGD--------KSKSY-------EETIEAA-KLAD 598
H IV Q P + T+L N+ G+ S Y EE +E A K+ +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 599 LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENN 658
+K + Y+ + GE LSGG+ + V I RA++ N ++V DE + + ++
Sbjct: 140 F----LKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 659 ILSS-LKTASRNKTTICIAHRLSTIKHLLGYKAH 691
I + L+ ++ T + I HRL + L Y H
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIV---LNYIDH 222
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 32/214 (14%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557
+ ++ ++ G I+G +GSGKST+I ++ F + + G +Y + K+I + + L
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL- 79
Query: 558 RHIAIV-----PQ---DPVLFHDTILYNINYGDKS----------KSYEETIEAA-KLAD 598
H IV PQ + + + ++ IN G+ EE +E A K+ +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 599 LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENN 658
+K + Y+ + GE LSGG+ + V I RA++ N ++V D+ + + ++
Sbjct: 140 F----LKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHD 191
Query: 659 ILSS-LKTASRNKTTICIAHRLSTIKHLLGYKAH 691
I + L+ ++ T + I HRL + L Y H
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIV---LNYIDH 222
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 36/199 (18%)
Query: 506 TIPAGKSVAIVGGSGSGKSTIIRLL------------------YRFFEPNAGAIYIDGKN 547
+ G V IVG +G+GKST +++L R F N Y +
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 548 INDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWP 607
++ +++ ++P+ ++ + D++ EE ++A +L ++ I+
Sbjct: 103 NGEIRPVVKPQYVDLIPK---AVKGKVIELLKKADETGKLEEVVKALELENVLEREIQ-- 157
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667
LSGGE QRVAIA A+L+N FDE +S LD N +++ S
Sbjct: 158 ------------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205
Query: 668 -RNKTTICIAHRLSTIKHL 685
K+ + + H L+ + +L
Sbjct: 206 EEGKSVLVVEHDLAVLDYL 224
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD 566
I G+ + IVG +G GK+T ++ L EP G I D +A PQ
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD-------------LTVAYKPQY 355
Query: 567 PVLFHDTILYNINYGDKSKSYEETIEAAKL-ADLHNSIIKWP----NHYETQVGERGLKL 621
++ +Y + SK I+A+KL ++ + + + P + Y+ +V E L
Sbjct: 356 IKADYEGTVYEL----LSK-----IDASKLNSNFYKTELLKPLGIIDLYDREVNE----L 402
Query: 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRNKTTICIAHRL 679
SGGE QRVAIA +L++ I + DE ++ LD + +++ KT + + H +
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Query: 680 STIKHL 685
I ++
Sbjct: 463 LXIDYV 468
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY--RFFEPN 537
+ +E RD+ ++ ID T I +N +P G+ A++G +G+GKST+ ++L +
Sbjct: 2 SQLEIRDL-WASIDGET--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE 58
Query: 538 AGAIYIDGKNINDVDLDS-LRRHIAIVPQDPVLFHDTILYN-INYGDKSKSYEETIEAAK 595
G I +DG+NI ++ D R+ + + Q PV + N + ++K E A
Sbjct: 59 RGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEF 118
Query: 596 LADLHNS--IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+ + ++ W Y ++ G SGGEK+R I + ++ V DE S LD
Sbjct: 119 WTKVKKALELLDWDESYLSRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLD- 175
Query: 654 ITENNILSSLKTASR 668
+ +LK +R
Sbjct: 176 ------IDALKVVAR 184
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 53/245 (21%)
Query: 505 FTIPAGKS---VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
F +P K+ + ++G +G GK+T++++L PN G D +S
Sbjct: 17 FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG------------DPNSK----- 59
Query: 562 IVPQDPVL--FHDTILYNINYGDKSKSYE-ETIEAAKLADLHNSIIKWP-NHYETQVGER 617
V +D VL F +YN Y + S E + + + + + +K N T++ ER
Sbjct: 60 -VGKDEVLKRFRGKEIYN--YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 618 GLK-------------------LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENN 658
G K LSGG QR+ +A ++L+ + +FD+ +S LD N
Sbjct: 117 GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 659 ILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHRKTSTNLVRGNSSAMRSMSLSRFSQVH 718
+ +++ +NK I + H L + +L +++ G SS +S S ++V
Sbjct: 177 MAKAIRELLKNKYVIVVDHDLIVLDYLTDL-------IHIIYGESSVYGRVSKSYAARVG 229
Query: 719 LNRYL 723
+N +L
Sbjct: 230 INNFL 234
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 47/186 (25%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVL 569
G+ + I+G +G GK+T R+L G I D ++ P+ +L
Sbjct: 294 GEIIGILGPNGIGKTTFARIL-------VGEITAD--------------EGSVTPEKQIL 332
Query: 570 FHDTILYNINYGDKSKSYEETI-------------EAAKLADLHNSIIKWPNHYETQVGE 616
+ NY + Y E E K +LH + E+ V +
Sbjct: 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL-------ESNVND 385
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK--TTIC 674
LSGGE Q++ IA + K + V D+ +S LD + ++K +R + T
Sbjct: 386 ----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441
Query: 675 IAHRLS 680
I H LS
Sbjct: 442 IDHDLS 447
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 18/172 (10%)
Query: 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL 553
K K I +++ I G + G +G+GK+T++ +L + +G + + GK V
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 554 --DSLRRHIAIVP-------QDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN--S 602
+++R+HI V Q+ D + I+ KS + I+ + H
Sbjct: 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVV---ISGAFKSIGVYQDIDDEIRNEAHQLLK 147
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654
++ + +G LS GEKQRV IARA+ +L+ DE + LD I
Sbjct: 148 LVGXSAKAQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFI 195
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 45/204 (22%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI-----------YIDGKNINDVDLDSLR 557
G+ + +VG +G GKST +++L +PN G Y G + + L
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 558 RHIA--IVPQDPVLFHDTILYNIN-----YGD-----KSKSYEETIEAAKLADLHNSIIK 605
I I PQ + D I I G+ KS E+ K+ L N
Sbjct: 162 DDIKAIIKPQ----YVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLEN---- 213
Query: 606 WPNHYETQVGERGL-KLSGGEKQRVAIARAILKNTPILVFDEATSSLD---SITENNILS 661
V +R + KLSGGE QR AI + ++ + +FDE +S LD + I+
Sbjct: 214 --------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265
Query: 662 SLKTASRNKTTICIAHRLSTIKHL 685
SL + K IC+ H LS + +L
Sbjct: 266 SLLAPT--KYVICVEHDLSVLDYL 287
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID-GKNINDVDLDSLRRHIAIVPQDPVLFH 571
+ ++G +G+GK+T+I+LL AGA+ D G++I +++ + IA P+ P
Sbjct: 381 LVMMGENGTGKTTLIKLL-------AGALKPDEGQDIPKLNVSMKPQKIA--PKFP---- 427
Query: 572 DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631
G + + + I L + + P + + + LSGGE QRVAI
Sbjct: 428 ---------GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAI 478
Query: 632 ARAILKNTPILVFDEATSSLDSITENNILSS 662
A+ I + DE ++ LDS E I+ S
Sbjct: 479 VLALGIPADIYLIDEPSAYLDS--EQRIICS 507
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
LSGG K ++A+ARA+L+N IL+ DE T+ LD++ +++ L T T+I I+H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG--ITSITISH 603
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
V T A ++ ++ F Y +I +++NF +A++G +G+GKST+I +L
Sbjct: 664 VKTKQKAIVKVTNMEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
Query: 534 FEPNAGAIY 542
P +G +Y
Sbjct: 723 LLPTSGEVY 731
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
LSGG K ++A+ARA+L+N IL+ DE T+ LD++ +++ L T T+I I+H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG--ITSITISH 603
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
V T A ++ + F Y +I +++NF +A++G +G+GKST+I +L
Sbjct: 664 VKTKQKAIVKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
Query: 534 FEPNAGAIY 542
P +G +Y
Sbjct: 723 LLPTSGEVY 731
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
LSGG K ++A+ARA+L+N IL+ DE T+ LD++ +++ L T T+I I+H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG--ITSITISH 597
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
V T A ++ + F Y +I +++NF +A++G +G+GKST+I +L
Sbjct: 658 VKTKQKAIVKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 716
Query: 534 FEPNAGAIY 542
P +G +Y
Sbjct: 717 LLPTSGEVY 725
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHR 678
+LSGGE QRVAIA A+L+ FDE +S LD + ++ A+ K + + H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 679 LSTIKHL 685
L+ + +L
Sbjct: 288 LAVLDYL 294
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 35/187 (18%)
Query: 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD 566
I G+ + IVG +G GK+T +++L EP G + D +A PQ
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQY 425
Query: 567 PVLFHDTILYNI-NYGDKSK----SYE-ETIEAAKLADLHNSIIKWPNHYETQVGERGLK 620
++ +Y + + D SK Y+ E ++ + DL++ ++
Sbjct: 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE--------------D 471
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRNKTTICIAHR 678
LSGGE QRVAIA +L++ I + DE ++ LD + +++ KT + + H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 679 LSTIKHL 685
+ I ++
Sbjct: 532 VLMIDYV 538
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHR 678
+LSGGE QRVAIA A+L+ FDE +S LD + ++ A+ K + + H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 679 LSTIKHL 685
L+ + +L
Sbjct: 274 LAVLDYL 280
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 35/187 (18%)
Query: 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD 566
I G+ + IVG +G GK+T +++L EP G + D +A PQ
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQY 411
Query: 567 PVLFHDTILYNI-NYGDKSK----SYE-ETIEAAKLADLHNSIIKWPNHYETQVGERGLK 620
++ +Y + + D SK Y+ E ++ + DL++ ++
Sbjct: 412 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE--------------D 457
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRNKTTICIAHR 678
LSGGE QRVAIA +L++ I + DE ++ LD + +++ KT + + H
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 679 LSTIKHL 685
+ I ++
Sbjct: 518 VLMIDYV 524
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 16/211 (7%)
Query: 482 IEFRDVNFSYIDKHTKRI-FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I+ ++V + K +R N+N + G+ V I+G +GSGK+T++R + P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
I+I+G +++ +R +I P + + N D YEE + DL
Sbjct: 60 IFING-----MEVRKIRNYIRYSTNLPEAYEIGVTVN----DIVYLYEELKGLDR--DLF 108
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
++K E + + KLS G+ V + A+ I+ DE ++D+ + I
Sbjct: 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 661 SSLKTASRNKTTICIAHRLSTIKHLLGYKAH 691
+K K I + H L + YKA+
Sbjct: 169 RYIK--EYGKEGILVTHELDMLNLYKEYKAY 197
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 23/185 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL--YRFFEPNAG 539
+ +D++ S DK I L+ + G+ AI+G +GSGKST+ L +E G
Sbjct: 21 LSIKDLHVSVEDK---AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 77
Query: 540 AIYIDGKNINDVD-LDSLRRHIAIVPQDPV--------LFHDTILYNINYGDKSKSYEET 590
+ GK++ + D I + Q PV F T L + +S +ET
Sbjct: 78 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAV----RSYRGQET 133
Query: 591 IEAAKLADLHN---SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
++ DL +++K P T+ G SGGEK+R I + + + + DE+
Sbjct: 134 LDRFDFQDLMEEKIALLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDES 191
Query: 648 TSSLD 652
S LD
Sbjct: 192 DSGLD 196
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 30/202 (14%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562
L+ + AG+ + +VG +G+GKST++ + G+I G+ + L H A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALHRAY 77
Query: 563 VPQDPVLFHDTILYN---INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGL 619
+ Q T +++ ++ DK+++ A LA + ++G
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA------------LDDKLGRSTN 125
Query: 620 KLSGGEKQRVAIARAILKNTP-------ILVFDEATSSLDSITENNILSSLKTASRNKTT 672
+LSGGE QRV +A +L+ TP +L+ D+ +SLD ++ + L S+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLA 185
Query: 673 ICI-AHRLS-TIKHLLGYKAHR 692
I + +H L+ T++H AHR
Sbjct: 186 IVMSSHDLNHTLRH-----AHR 202
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 30/202 (14%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562
L+ + AG+ + +VG +G+GKST++ + G+I G+ + L H A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALHRAY 77
Query: 563 VPQDPVLFHDTILYN---INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGL 619
+ Q T +++ ++ DK+++ A LA + ++G
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA------------LDDKLGRSTN 125
Query: 620 KLSGGEKQRVAIARAILKNTP-------ILVFDEATSSLDSITENNILSSLKTASRNKTT 672
+LSGGE QRV +A +L+ TP +L+ D+ SLD ++ + L S+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLA 185
Query: 673 ICI-AHRLS-TIKHLLGYKAHR 692
I + +H L+ T++H AHR
Sbjct: 186 IVMSSHDLNHTLRH-----AHR 202
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 23/185 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL--YRFFEPNAG 539
+ +D++ S DK I L+ + G+ AI+G +GSGKST+ L +E G
Sbjct: 2 LSIKDLHVSVEDK---AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 540 AIYIDGKNINDVDL-DSLRRHIAIVPQDPV--------LFHDTILYNINYGDKSKSYEET 590
+ GK++ + D I + Q PV F T L + +S +ET
Sbjct: 59 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAV----RSYRGQET 114
Query: 591 IEAAKLADLHN---SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
++ DL +++K P T+ G SGGEK+R I + + + + DE+
Sbjct: 115 LDRFDFQDLMEEKIALLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDES 172
Query: 648 TSSLD 652
S LD
Sbjct: 173 DSGLD 177
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 34/204 (16%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLDSLRRHI 560
L+ + AG+ + +VG +G+GKST LL R G+I G+ + L H
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 561 AIVPQDPVLFHDTILYN---INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
A + Q T +++ ++ DK+++ A LA + ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA------------LDDKLGRS 123
Query: 618 GLKLSGGEKQRVAIARAILKNTP-------ILVFDEATSSLDSITENNILSSLKTASRNK 670
+LSGGE QRV +A +L+ TP +L+ DE +SLD ++ + L S+
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQG 183
Query: 671 TTICI-AHRLS-TIKHLLGYKAHR 692
I +H L+ T++H AHR
Sbjct: 184 LAIVXSSHDLNHTLRH-----AHR 202
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 38/206 (18%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLDSLRRHI 560
L+ + AG+ + +VG +G+GKST LL R G+I G+ + L H
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 561 AIVPQDPVLFHDTILYN---INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
A + Q T +++ ++ DK+++ A LA + ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA------------LDDKLGRS 123
Query: 618 GLKLSGGEKQRVAIARAILKNTP-------ILVFDEATSSLDSITE---NNILSSLKTAS 667
+LSGGE QRV +A +L+ TP +L+ DE +SLD + + ILS+L
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL--CQ 181
Query: 668 RNKTTICIAHRLS-TIKHLLGYKAHR 692
+ + +H L+ T++H AHR
Sbjct: 182 QGLAIVXSSHDLNHTLRH-----AHR 202
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 613 QVGERGLKLSGGEKQRVAIARAILKNT---PILVFDEATSSL--DSITE-NNILSSLKTA 666
++G+ LSGGE QRV +A + K + + + DE T+ L D I + N+++ L
Sbjct: 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGL--V 913
Query: 667 SRNKTTICIAHRLSTIK 683
+ T I I H L IK
Sbjct: 914 DKGNTVIVIEHNLDVIK 930
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 621 LSGGEKQRVAIAR--AILKNTPI--LVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
LSGGE+ AIA +ILK P+ V DE ++LD LK S + I I
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 677 HRLSTIKH 684
HR T++
Sbjct: 389 HRKGTMEE 396
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 621 LSGGEKQRVAIARAI----LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
LSGGEK V +A +K +P V DE S LD LK S++ I I
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279
Query: 677 H 677
H
Sbjct: 280 H 280
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNT---PILVFDEATSSLDSITENNILSSL-KTAS 667
++G+ LSGGE QR+ +A + K + + DE T L ++ L +
Sbjct: 797 VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD 856
Query: 668 RNKTTICIAHRLSTIKH 684
R T I I H L IK+
Sbjct: 857 RGNTVIVIEHNLDVIKN 873
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTII 527
N++ IP G V + G SGSGKS+++
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLV 627
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTII-RLLYR 532
N++ IP G VA+ G SGSGKST++ +LY+
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYK 673
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 613 QVGERGLKLSGGEKQRVAIARAILKNT---PILVFDEATSSLDSITENNILSSL-KTASR 668
++G+ LSGGE QRV +A + + + + + DE T+ L +L L +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 669 NKTTICIAHRLSTIK 683
T + I H L IK
Sbjct: 898 GDTVLVIEHNLDVIK 912
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTI 526
N++ IP GK V + G SGSGKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTII-RLLYR 532
N++ IP G VA+ G SGSGKST++ +LY+
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYK 673
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 613 QVGERGLKLSGGEKQRVAIARAILKNT---PILVFDEATSSLDSITENNILSSL-KTASR 668
++G+ LSGGE QRV +A + + + + + DE T+ L +L L +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 669 NKTTICIAHRLSTIK 683
T + I H L IK
Sbjct: 898 GDTVLVIEHNLDVIK 912
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTI 526
N++ IP GK V + G SGSGKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 613 QVGERGLKLSGGEKQRVAIA---RAILKNTPILVFDEATSSLDSITENNILSSL-KTASR 668
++G+ +LSGGE QR+ +A R + + V DE T+ L + L K
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 669 NKTTICIAHRLSTI 682
T I + H++ +
Sbjct: 783 GNTVIAVEHKMQVV 796
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTII 527
T+ NL+ P G ++ G SGSGKST++
Sbjct: 509 TRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLV 540
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTII-RLLYR 532
N++ IP G VA+ G SGSGKST++ +LY+
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYK 371
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 613 QVGERGLKLSGGEKQRVAIARAILKNT---PILVFDEATSSLDSITENNILSSL-KTASR 668
++G+ LSGGE QRV +A + + + + + DE T+ L +L L +
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 669 NKTTICIAHRLSTIK 683
T + I H L IK
Sbjct: 596 GDTVLVIEHNLDVIK 610
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTI 526
N++ IP GK V + G SGSGKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|2HSN|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
Length = 160
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 136 QIRNRVKVAMGLLYAVDELNTGIVSDGALLELTNATDALIASATSIILGY 185
Q+ N +K+A+ L YA L + +D A +EL N + + + IL Y
Sbjct: 18 QLANNLKIALALEYASKNLKPEVDNDNAAMELRNTKEPFLLFDANAILRY 67
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 484 FRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI 543
F + F + + ++ S + I GK+V + GG+GSGK+T I+ + F I I
Sbjct: 145 FEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204
Query: 544 D 544
+
Sbjct: 205 E 205
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 484 FRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI 543
F + F + + ++ S + I GK+V + GG+GSGK+T I+ + F I I
Sbjct: 145 FEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIXEFIPKEERIISI 204
Query: 544 D 544
+
Sbjct: 205 E 205
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-------------PNAGAIYIDGKNI 548
NL F + + I G SG+GKST+++ L+ + P AG ++GK+
Sbjct: 9 NLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGE--VNGKDY 66
Query: 549 NDVDLDSLRRHI 560
N V +D + I
Sbjct: 67 NFVSVDEFKSMI 78
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 621 LSGGEKQRVAIARAIL------KNTPILVFDEATSSLDSITENNILSSLKTASR-NKTTI 673
LSGGE+ ++I+ A+ DE SSLD+ + I S LK R NK +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 674 CIAH 677
I H
Sbjct: 340 FITH 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,673,064
Number of Sequences: 62578
Number of extensions: 791242
Number of successful extensions: 2544
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2307
Number of HSP's gapped (non-prelim): 156
length of query: 816
length of database: 14,973,337
effective HSP length: 107
effective length of query: 709
effective length of database: 8,277,491
effective search space: 5868741119
effective search space used: 5868741119
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)