Query psy4347
Match_columns 816
No_of_seqs 570 out of 3529
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:15:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058|consensus 100.0 3E-110 7E-115 953.9 63.6 559 120-709 133-700 (716)
2 COG2274 SunT ABC-type bacterio 100.0 6E-104 1E-108 932.6 68.0 583 88-706 111-702 (709)
3 KOG0056|consensus 100.0 3E-103 6E-108 851.3 30.5 562 123-711 199-772 (790)
4 KOG0055|consensus 100.0 7.5E-99 2E-103 901.2 65.1 501 186-709 714-1222(1228)
5 KOG0057|consensus 100.0 9.6E-99 2E-103 833.9 56.7 563 117-711 8-584 (591)
6 KOG0055|consensus 100.0 4.8E-97 1E-101 885.7 49.3 493 191-706 83-582 (1228)
7 TIGR01193 bacteriocin_ABC ABC- 100.0 8.3E-94 1.8E-98 861.2 70.6 580 88-705 113-702 (708)
8 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.6E-93 3.4E-98 859.2 70.7 580 90-705 113-705 (710)
9 TIGR03375 type_I_sec_LssB type 100.0 3.3E-93 7.2E-98 854.3 70.3 581 88-702 101-690 (694)
10 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.1E-92 1.1E-96 842.9 72.4 572 87-705 97-678 (686)
11 COG5265 ATM1 ABC-type transpor 100.0 3.8E-95 8E-100 782.9 38.9 487 199-710 2-495 (497)
12 PRK11174 cysteine/glutathione 100.0 1.3E-91 2.8E-96 825.8 68.8 492 186-705 70-577 (588)
13 COG1132 MdlB ABC-type multidru 100.0 6.5E-91 1.4E-95 816.6 68.9 491 191-710 64-561 (567)
14 TIGR01846 type_I_sec_HlyB type 100.0 7.7E-90 1.7E-94 825.0 70.9 583 87-709 97-688 (694)
15 TIGR00958 3a01208 Conjugate Tr 100.0 4.2E-89 9E-94 819.8 70.4 492 187-705 209-707 (711)
16 TIGR02868 CydC thiol reductant 100.0 2.2E-88 4.7E-93 788.9 65.9 466 189-679 63-529 (529)
17 PTZ00265 multidrug resistance 100.0 3E-88 6.6E-93 857.0 71.3 491 190-705 877-1458(1466)
18 PRK11176 lipid transporter ATP 100.0 1.9E-87 4.1E-92 789.4 70.1 495 188-710 74-576 (582)
19 PRK11160 cysteine/glutathione 100.0 5.3E-87 1.1E-91 784.3 70.4 490 188-705 69-567 (574)
20 PRK10790 putative multidrug tr 100.0 5.6E-86 1.2E-90 778.5 70.5 495 185-711 71-573 (592)
21 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-84 2.5E-89 763.8 68.7 496 185-708 60-563 (571)
22 COG4988 CydD ABC-type transpor 100.0 4.9E-84 1.1E-88 727.2 62.7 500 181-706 42-549 (559)
23 PRK13657 cyclic beta-1,2-gluca 100.0 1.9E-83 4.1E-88 756.5 70.6 486 194-705 71-563 (588)
24 TIGR01192 chvA glucan exporter 100.0 5E-83 1.1E-87 752.0 71.3 488 192-705 69-563 (585)
25 PRK10789 putative multidrug tr 100.0 4.4E-83 9.5E-88 750.6 67.8 490 190-705 47-543 (569)
26 TIGR02857 CydD thiol reductant 100.0 1.2E-82 2.6E-87 740.8 67.4 477 186-690 51-527 (529)
27 TIGR02204 MsbA_rel ABC transpo 100.0 2.5E-82 5.5E-87 744.9 70.1 492 190-704 69-567 (576)
28 TIGR01842 type_I_sec_PrtD type 100.0 4.7E-80 1E-84 721.4 67.4 483 185-701 52-543 (544)
29 TIGR00957 MRP_assoc_pro multi 100.0 4.2E-80 9E-85 789.4 67.2 492 190-709 1016-1516(1522)
30 PTZ00265 multidrug resistance 100.0 1.3E-79 2.7E-84 778.5 68.8 474 188-686 106-647 (1466)
31 PLN03130 ABC transporter C fam 100.0 6.4E-79 1.4E-83 778.5 70.6 495 185-710 959-1471(1622)
32 PTZ00243 ABC transporter; Prov 100.0 1.9E-78 4.2E-83 772.9 71.3 490 197-710 1016-1543(1560)
33 PLN03232 ABC transporter C fam 100.0 1.7E-78 3.7E-83 773.6 66.9 498 186-711 957-1469(1495)
34 COG4987 CydC ABC-type transpor 100.0 6.6E-78 1.4E-82 667.6 57.1 488 190-706 69-567 (573)
35 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.7E-75 1.7E-79 678.9 63.8 462 191-686 65-538 (555)
36 TIGR01271 CFTR_protein cystic 100.0 7E-74 1.5E-78 730.4 67.2 489 191-710 937-1449(1490)
37 COG4618 ArpD ABC-type protease 100.0 3.4E-73 7.3E-78 624.7 48.6 490 178-701 62-561 (580)
38 KOG0054|consensus 100.0 1.6E-71 3.4E-76 680.2 54.2 497 184-707 863-1369(1381)
39 PLN03232 ABC transporter C fam 100.0 3.3E-70 7.2E-75 697.6 66.1 458 202-704 364-832 (1495)
40 PLN03130 ABC transporter C fam 100.0 5.9E-69 1.3E-73 687.0 66.6 459 203-704 365-832 (1622)
41 PRK10522 multidrug transporter 100.0 1.6E-68 3.5E-73 624.7 64.1 456 194-692 63-530 (547)
42 TIGR00954 3a01203 Peroxysomal 100.0 1.7E-67 3.6E-72 627.0 61.9 471 185-694 145-654 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-62 2.7E-67 629.0 67.4 475 189-704 368-854 (1522)
44 TIGR01271 CFTR_protein cystic 100.0 9.6E-60 2.1E-64 600.8 66.7 477 182-705 125-641 (1490)
45 KOG0054|consensus 100.0 5E-59 1.1E-63 570.4 59.5 484 179-703 242-734 (1381)
46 PTZ00243 ABC transporter; Prov 100.0 1E-57 2.2E-62 583.0 64.4 484 179-701 285-871 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.2E-50 2.6E-55 434.8 26.9 226 480-709 1-233 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 1.3E-50 2.8E-55 407.4 20.3 208 481-702 2-227 (240)
49 COG1117 PstB ABC-type phosphat 100.0 2E-48 4.4E-53 389.9 20.0 213 480-702 6-239 (253)
50 COG1135 AbcC ABC-type metal io 100.0 4.8E-48 1E-52 406.4 20.4 211 482-703 2-234 (339)
51 COG1125 OpuBA ABC-type proline 100.0 5.6E-48 1.2E-52 395.2 19.0 209 482-704 2-229 (309)
52 cd03252 ABCC_Hemolysin The ABC 100.0 9.3E-47 2E-51 395.6 26.4 221 482-703 1-228 (237)
53 PRK14257 phosphate ABC transpo 100.0 5.2E-47 1.1E-51 416.5 24.7 216 479-702 78-315 (329)
54 cd03254 ABCC_Glucan_exporter_l 100.0 4.4E-46 9.5E-51 388.3 25.7 220 480-701 1-227 (229)
55 cd03288 ABCC_SUR2 The SUR doma 100.0 8.8E-46 1.9E-50 393.5 27.3 227 478-706 16-249 (257)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 1.6E-45 3.5E-50 385.3 26.5 221 482-703 1-228 (234)
57 cd03253 ABCC_ATM1_transporter 100.0 1.5E-45 3.2E-50 386.0 26.2 218 482-701 1-225 (236)
58 cd03244 ABCC_MRP_domain2 Domai 100.0 1.3E-45 2.8E-50 382.7 25.5 205 480-686 1-205 (221)
59 COG3839 MalK ABC-type sugar tr 100.0 1.5E-45 3.2E-50 400.1 22.0 207 481-703 3-226 (338)
60 cd03245 ABCC_bacteriocin_expor 100.0 6.6E-45 1.4E-49 377.2 25.8 210 481-692 2-211 (220)
61 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6.4E-45 1.4E-49 381.9 25.8 220 482-701 1-227 (238)
62 COG4178 ABC-type uncharacteriz 100.0 2.3E-41 4.9E-46 387.6 57.2 461 187-688 94-583 (604)
63 COG2884 FtsE Predicted ATPase 100.0 7.6E-46 1.7E-50 365.4 17.3 195 482-689 2-207 (223)
64 COG1127 Ttg2A ABC-type transpo 100.0 2.3E-45 5.1E-50 374.5 20.6 210 480-703 7-238 (263)
65 TIGR02314 ABC_MetN D-methionin 100.0 6.2E-45 1.3E-49 401.5 23.6 210 482-702 2-232 (343)
66 COG1116 TauB ABC-type nitrate/ 100.0 4.6E-45 9.9E-50 376.9 20.9 196 481-695 3-207 (248)
67 COG1136 SalX ABC-type antimicr 100.0 1.9E-44 4.2E-49 371.6 23.4 194 482-686 2-210 (226)
68 cd03261 ABC_Org_Solvent_Resist 100.0 1.9E-44 4.2E-49 377.8 23.6 206 482-701 1-227 (235)
69 COG3842 PotA ABC-type spermidi 100.0 7.3E-45 1.6E-49 396.6 20.4 208 480-703 4-229 (352)
70 cd03248 ABCC_TAP TAP, the Tran 100.0 4.6E-44 9.9E-49 372.6 24.0 213 479-692 9-221 (226)
71 COG1120 FepC ABC-type cobalami 100.0 2.4E-44 5.2E-49 377.6 20.2 207 481-701 2-229 (258)
72 cd03260 ABC_PstB_phosphate_tra 100.0 4.9E-44 1.1E-48 372.7 22.1 204 482-697 1-226 (227)
73 PRK13631 cbiO cobalt transport 100.0 1.3E-43 2.9E-48 388.2 26.1 215 480-701 20-266 (320)
74 TIGR00960 3a0501s02 Type II (G 100.0 8.5E-44 1.8E-48 368.1 21.7 200 482-693 2-212 (216)
75 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.1E-43 2.3E-48 371.1 22.4 204 481-701 4-228 (254)
76 PRK13650 cbiO cobalt transport 100.0 1.5E-43 3.3E-48 381.0 23.9 210 481-701 4-230 (279)
77 COG1122 CbiO ABC-type cobalt t 100.0 9.5E-44 2.1E-48 371.7 21.3 208 481-701 3-229 (235)
78 PRK11650 ugpC glycerol-3-phosp 100.0 3.2E-43 6.9E-48 390.2 25.0 207 481-702 3-226 (356)
79 cd03256 ABC_PhnC_transporter A 100.0 2.5E-43 5.4E-48 370.1 22.8 205 482-699 1-233 (241)
80 COG1124 DppF ABC-type dipeptid 100.0 1.7E-43 3.8E-48 362.3 20.9 208 481-701 3-232 (252)
81 PRK14269 phosphate ABC transpo 100.0 3.8E-43 8.2E-48 370.8 23.9 211 481-701 2-231 (246)
82 cd03219 ABC_Mj1267_LivG_branch 100.0 3.7E-43 8.1E-48 367.9 22.6 205 482-700 1-232 (236)
83 PRK13647 cbiO cobalt transport 100.0 5.2E-43 1.1E-47 375.9 24.2 205 481-698 4-225 (274)
84 cd03263 ABC_subfamily_A The AB 100.0 3.4E-43 7.3E-48 364.4 21.7 204 482-698 1-219 (220)
85 COG3638 ABC-type phosphate/pho 100.0 3.8E-43 8.3E-48 357.5 21.0 207 481-700 3-237 (258)
86 PRK14250 phosphate ABC transpo 100.0 1E-42 2.2E-47 366.7 24.9 208 481-702 3-223 (241)
87 TIGR02315 ABC_phnC phosphonate 100.0 5E-43 1.1E-47 368.5 22.6 204 482-698 2-233 (243)
88 PRK11153 metN DL-methionine tr 100.0 5.3E-43 1.2E-47 387.1 23.7 210 482-702 2-232 (343)
89 PRK11432 fbpC ferric transport 100.0 4.9E-43 1.1E-47 387.9 23.3 207 481-703 6-229 (351)
90 PRK14242 phosphate transporter 100.0 7.8E-43 1.7E-47 369.6 23.8 212 480-701 5-238 (253)
91 COG3840 ThiQ ABC-type thiamine 100.0 3E-43 6.5E-48 344.5 18.7 205 482-704 2-223 (231)
92 cd03296 ABC_CysA_sulfate_impor 100.0 6.3E-43 1.4E-47 367.4 22.6 204 482-701 3-227 (239)
93 TIGR03265 PhnT2 putative 2-ami 100.0 6.2E-43 1.3E-47 387.5 23.7 207 481-703 4-227 (353)
94 cd03258 ABC_MetN_methionine_tr 100.0 8.4E-43 1.8E-47 364.7 22.8 208 482-700 2-230 (233)
95 TIGR00972 3a0107s01c2 phosphat 100.0 1.4E-42 3E-47 366.6 24.3 210 482-701 2-233 (247)
96 PRK14273 phosphate ABC transpo 100.0 1.3E-42 2.9E-47 368.2 24.1 213 480-702 6-240 (254)
97 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.9E-42 4.1E-47 356.0 24.5 188 479-686 4-191 (207)
98 PRK13635 cbiO cobalt transport 100.0 1.1E-42 2.4E-47 374.3 23.7 209 481-701 5-230 (279)
99 cd03224 ABC_TM1139_LivF_branch 100.0 1.2E-42 2.6E-47 360.5 22.8 205 482-699 1-220 (222)
100 cd03250 ABCC_MRP_domain1 Domai 100.0 2E-42 4.4E-47 354.9 24.0 196 482-692 1-200 (204)
101 TIGR02673 FtsE cell division A 100.0 9.9E-43 2.1E-47 359.4 21.7 198 482-692 2-210 (214)
102 PRK13637 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 375.5 23.3 211 482-701 3-235 (287)
103 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1E-42 2.2E-47 360.4 21.7 199 482-692 1-213 (218)
104 cd03259 ABC_Carb_Solutes_like 100.0 6.1E-43 1.3E-47 361.0 19.6 195 482-692 1-204 (213)
105 PRK13646 cbiO cobalt transport 100.0 1.5E-42 3.3E-47 374.4 23.3 209 482-701 3-236 (286)
106 cd03226 ABC_cobalt_CbiO_domain 100.0 9.5E-43 2.1E-47 357.7 20.6 195 483-693 1-200 (205)
107 PRK13643 cbiO cobalt transport 100.0 2.1E-42 4.5E-47 373.9 24.2 209 482-701 2-234 (288)
108 PRK13642 cbiO cobalt transport 100.0 2E-42 4.2E-47 371.9 23.9 212 481-703 4-232 (277)
109 COG4615 PvdE ABC-type sideroph 100.0 2E-39 4.4E-44 347.6 46.6 450 198-692 67-529 (546)
110 PRK11629 lolD lipoprotein tran 100.0 1.7E-42 3.6E-47 362.9 22.4 199 481-691 5-217 (233)
111 PRK10744 pstB phosphate transp 100.0 3.5E-42 7.5E-47 366.5 25.2 213 479-701 11-245 (260)
112 cd03225 ABC_cobalt_CbiO_domain 100.0 1.5E-42 3.2E-47 357.4 21.1 198 483-692 1-207 (211)
113 TIGR01186 proV glycine betaine 100.0 1.3E-42 2.7E-47 385.3 21.9 196 496-702 5-221 (363)
114 PRK13636 cbiO cobalt transport 100.0 2.8E-42 6.1E-47 371.9 23.9 208 481-701 5-232 (283)
115 cd03268 ABC_BcrA_bacitracin_re 100.0 1.8E-42 3.9E-47 356.2 21.3 194 482-691 1-198 (208)
116 PRK10851 sulfate/thiosulfate t 100.0 2.5E-42 5.3E-47 382.7 23.8 205 482-702 3-228 (353)
117 cd03264 ABC_drug_resistance_li 100.0 1.9E-42 4.1E-47 356.8 21.4 195 482-692 1-202 (211)
118 PRK09536 btuD corrinoid ABC tr 100.0 2.7E-42 5.9E-47 387.1 24.3 207 481-701 3-229 (402)
119 cd03292 ABC_FtsE_transporter F 100.0 2.7E-42 5.9E-47 355.9 22.3 198 482-692 1-209 (214)
120 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.5E-42 5.4E-47 363.6 22.4 209 482-701 1-226 (242)
121 PRK13652 cbiO cobalt transport 100.0 3.5E-42 7.5E-47 370.0 24.0 207 482-701 4-228 (277)
122 PRK14235 phosphate transporter 100.0 4.2E-42 9.1E-47 367.4 24.3 213 479-701 17-252 (267)
123 PRK14267 phosphate ABC transpo 100.0 3.1E-42 6.7E-47 365.0 22.9 211 481-701 4-238 (253)
124 PRK14247 phosphate ABC transpo 100.0 3.6E-42 7.8E-47 363.9 23.2 211 481-701 3-235 (250)
125 cd03266 ABC_NatA_sodium_export 100.0 2.6E-42 5.6E-47 357.3 21.6 199 482-692 2-209 (218)
126 PRK13634 cbiO cobalt transport 100.0 3E-42 6.5E-47 372.9 22.9 210 482-701 3-236 (290)
127 PRK09452 potA putrescine/sperm 100.0 4.4E-42 9.6E-47 383.0 24.8 208 480-703 13-237 (375)
128 PRK13632 cbiO cobalt transport 100.0 3.6E-42 7.9E-47 368.7 23.3 209 481-701 7-232 (271)
129 TIGR03005 ectoine_ehuA ectoine 100.0 3.7E-42 8E-47 364.4 23.0 207 482-702 1-238 (252)
130 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.9E-41 4.1E-46 365.0 28.5 227 452-702 15-249 (282)
131 TIGR03258 PhnT 2-aminoethylpho 100.0 3.8E-42 8.2E-47 382.1 23.8 208 479-702 3-230 (362)
132 PRK13644 cbiO cobalt transport 100.0 5.4E-42 1.2E-46 368.0 24.2 207 482-701 2-225 (274)
133 cd03290 ABCC_SUR1_N The SUR do 100.0 5.6E-42 1.2E-46 355.2 23.3 206 483-692 2-214 (218)
134 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.8E-42 1.2E-46 359.5 23.6 206 482-702 2-223 (236)
135 cd03301 ABC_MalK_N The N-termi 100.0 2.8E-42 6E-47 355.9 20.7 195 482-692 1-204 (213)
136 cd03265 ABC_DrrA DrrA is the A 100.0 4.7E-42 1E-46 356.3 22.4 201 482-697 1-218 (220)
137 PRK15079 oligopeptide ABC tran 100.0 5E-42 1.1E-46 377.3 23.7 211 481-702 8-253 (331)
138 TIGR02211 LolD_lipo_ex lipopro 100.0 3.7E-42 8E-47 356.9 21.4 199 482-692 2-214 (221)
139 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.6E-42 5.6E-47 369.5 20.8 206 483-702 26-252 (269)
140 cd03218 ABC_YhbG The ABC trans 100.0 5.3E-42 1.1E-46 358.3 22.5 205 482-700 1-222 (232)
141 PRK10575 iron-hydroxamate tran 100.0 5.3E-42 1.2E-46 366.1 23.0 206 481-700 11-237 (265)
142 PRK11124 artP arginine transpo 100.0 6.2E-42 1.3E-46 360.4 23.1 205 482-700 3-230 (242)
143 cd03235 ABC_Metallic_Cations A 100.0 2.9E-42 6.2E-47 355.9 19.9 192 483-693 1-206 (213)
144 PRK10908 cell division protein 100.0 6.9E-42 1.5E-46 355.5 22.8 200 482-694 2-212 (222)
145 PRK13633 cobalt transporter AT 100.0 5.5E-42 1.2E-46 369.0 22.8 210 481-701 4-234 (280)
146 PRK11831 putative ABC transpor 100.0 7.3E-42 1.6E-46 366.0 23.4 207 481-701 7-234 (269)
147 TIGR03411 urea_trans_UrtD urea 100.0 7.6E-42 1.7E-46 359.5 23.0 205 482-700 3-231 (242)
148 PRK11000 maltose/maltodextrin 100.0 7.1E-42 1.5E-46 381.5 24.1 206 481-702 3-225 (369)
149 PRK13640 cbiO cobalt transport 100.0 1E-41 2.2E-46 367.4 24.4 210 480-701 4-233 (282)
150 PRK14251 phosphate ABC transpo 100.0 6.8E-42 1.5E-46 362.0 22.5 212 481-702 4-237 (251)
151 PRK14245 phosphate ABC transpo 100.0 8.5E-42 1.8E-46 361.2 23.2 212 481-702 3-236 (250)
152 PRK14240 phosphate transporter 100.0 1.4E-41 3E-46 359.4 24.7 212 480-701 2-235 (250)
153 PRK10247 putative ABC transpor 100.0 6E-42 1.3E-46 357.1 21.7 199 481-693 7-211 (225)
154 PRK09493 glnQ glutamine ABC tr 100.0 8.4E-42 1.8E-46 359.0 22.9 206 482-701 2-226 (240)
155 PRK11231 fecE iron-dicitrate t 100.0 9E-42 1.9E-46 362.2 23.1 205 482-700 3-227 (255)
156 PRK14274 phosphate ABC transpo 100.0 1.5E-41 3.2E-46 361.4 24.7 211 481-701 12-244 (259)
157 PRK14237 phosphate transporter 100.0 1.4E-41 3E-46 363.5 24.6 213 479-701 18-252 (267)
158 PRK14248 phosphate ABC transpo 100.0 9.7E-42 2.1E-46 364.6 23.3 211 481-701 21-253 (268)
159 PRK14239 phosphate transporter 100.0 1.1E-41 2.5E-46 360.3 23.6 212 481-702 5-238 (252)
160 PRK13651 cobalt transporter AT 100.0 1.2E-41 2.6E-46 370.5 24.0 209 482-701 3-255 (305)
161 TIGR03410 urea_trans_UrtE urea 100.0 9.2E-42 2E-46 356.2 22.2 204 482-698 1-219 (230)
162 PRK10619 histidine/lysine/argi 100.0 1.6E-41 3.4E-46 360.8 24.1 210 479-701 3-242 (257)
163 PRK11264 putative amino-acid A 100.0 1.2E-41 2.5E-46 359.8 22.8 206 482-701 4-234 (250)
164 PRK14268 phosphate ABC transpo 100.0 1.4E-41 3.1E-46 361.4 23.5 212 480-701 11-243 (258)
165 PRK13648 cbiO cobalt transport 100.0 1.4E-41 3.1E-46 363.7 23.5 209 481-701 7-232 (269)
166 PRK13537 nodulation ABC transp 100.0 1.1E-41 2.3E-46 371.2 23.0 207 480-701 6-228 (306)
167 cd03262 ABC_HisP_GlnQ_permease 100.0 9.4E-42 2E-46 351.7 21.3 197 482-692 1-208 (213)
168 PRK14244 phosphate ABC transpo 100.0 8.1E-42 1.7E-46 361.6 21.3 210 482-701 6-238 (251)
169 PRK13638 cbiO cobalt transport 100.0 1.1E-41 2.4E-46 364.8 22.6 206 482-701 2-226 (271)
170 PRK14236 phosphate transporter 100.0 2.1E-41 4.6E-46 363.0 24.2 213 479-701 23-257 (272)
171 TIGR02769 nickel_nikE nickel i 100.0 2E-41 4.3E-46 361.8 23.7 210 482-701 3-241 (265)
172 PRK14256 phosphate ABC transpo 100.0 2.3E-41 5.1E-46 358.3 24.0 212 480-701 3-237 (252)
173 PRK14249 phosphate ABC transpo 100.0 2.7E-41 5.9E-46 357.6 24.5 211 481-701 4-236 (251)
174 PRK11614 livF leucine/isoleuci 100.0 2.6E-41 5.7E-46 354.6 23.6 211 481-700 5-226 (237)
175 PRK13548 hmuV hemin importer A 100.0 3.4E-41 7.4E-46 358.7 24.7 205 482-700 3-230 (258)
176 PRK11607 potG putrescine trans 100.0 2.1E-41 4.6E-46 378.0 24.1 208 480-703 18-242 (377)
177 PRK11300 livG leucine/isoleuci 100.0 2.6E-41 5.7E-46 358.1 23.7 206 481-700 5-243 (255)
178 PRK14262 phosphate ABC transpo 100.0 2.1E-41 4.6E-46 358.0 22.8 211 481-701 3-235 (250)
179 PRK10584 putative ABC transpor 100.0 1.8E-41 4E-46 353.5 22.0 200 481-692 6-219 (228)
180 PRK14261 phosphate ABC transpo 100.0 2.7E-41 6E-46 357.9 23.5 211 481-701 6-238 (253)
181 PRK11308 dppF dipeptide transp 100.0 2.8E-41 6E-46 371.0 24.2 211 481-702 5-246 (327)
182 TIGR01288 nodI ATP-binding ABC 100.0 2.2E-41 4.7E-46 368.4 23.2 206 481-701 4-225 (303)
183 PRK13649 cbiO cobalt transport 100.0 2.5E-41 5.4E-46 363.7 23.4 210 482-701 3-235 (280)
184 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-41 2.4E-46 353.5 19.7 195 482-692 1-205 (220)
185 PRK14253 phosphate ABC transpo 100.0 3.9E-41 8.4E-46 355.8 24.2 210 481-700 3-233 (249)
186 TIGR03873 F420-0_ABC_ATP propo 100.0 2.9E-41 6.3E-46 358.5 23.3 205 482-700 2-226 (256)
187 cd03247 ABCC_cytochrome_bd The 100.0 1.7E-41 3.7E-46 341.2 20.4 164 482-686 1-164 (178)
188 PRK11247 ssuB aliphatic sulfon 100.0 2.8E-41 6.1E-46 359.3 23.2 198 480-696 11-219 (257)
189 PRK13639 cbiO cobalt transport 100.0 2.1E-41 4.5E-46 363.7 22.4 207 482-701 2-227 (275)
190 PRK14238 phosphate transporter 100.0 3.3E-41 7.1E-46 361.4 23.8 211 481-701 24-256 (271)
191 cd03257 ABC_NikE_OppD_transpor 100.0 3.7E-41 8E-46 350.6 23.3 201 482-692 2-219 (228)
192 PRK10070 glycine betaine trans 100.0 2.5E-41 5.5E-46 379.1 23.7 194 498-702 42-256 (400)
193 PRK10253 iron-enterobactin tra 100.0 4.7E-41 1E-45 358.9 24.5 207 480-700 6-233 (265)
194 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.2E-41 6.9E-46 347.7 22.3 193 482-692 1-202 (211)
195 PRK14266 phosphate ABC transpo 100.0 3.7E-41 8.1E-46 356.1 23.4 210 482-701 4-235 (250)
196 PRK13645 cbiO cobalt transport 100.0 3.6E-41 7.8E-46 364.2 23.7 213 479-701 4-241 (289)
197 PRK10895 lipopolysaccharide AB 100.0 3.7E-41 8E-46 354.3 23.1 206 481-700 3-226 (241)
198 PRK13641 cbiO cobalt transport 100.0 4.4E-41 9.6E-46 363.3 24.0 209 482-701 3-235 (287)
199 PRK14259 phosphate ABC transpo 100.0 6.6E-41 1.4E-45 358.7 24.9 201 480-690 12-224 (269)
200 cd03231 ABC_CcmA_heme_exporter 100.0 4.7E-41 1E-45 344.5 22.7 196 482-692 1-198 (201)
201 PRK14260 phosphate ABC transpo 100.0 4.4E-41 9.5E-46 357.8 23.2 212 480-701 6-244 (259)
202 TIGR00968 3a0106s01 sulfate AB 100.0 5.1E-41 1.1E-45 352.8 23.4 204 482-701 1-221 (237)
203 TIGR03522 GldA_ABC_ATP gliding 100.0 4.6E-41 9.9E-46 365.5 23.7 206 482-702 3-223 (301)
204 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-41 2.3E-46 357.7 18.0 208 481-704 2-231 (345)
205 cd03269 ABC_putative_ATPase Th 100.0 2.3E-41 5E-46 348.4 20.2 193 482-692 1-201 (210)
206 cd03300 ABC_PotA_N PotA is an 100.0 2.8E-41 6.2E-46 353.5 21.0 204 482-701 1-221 (232)
207 PRK10771 thiQ thiamine transpo 100.0 7.2E-41 1.6E-45 350.3 23.9 202 482-701 2-220 (232)
208 TIGR01978 sufC FeS assembly AT 100.0 4E-41 8.8E-46 353.8 22.1 206 482-699 1-233 (243)
209 PRK11022 dppD dipeptide transp 100.0 5.2E-41 1.1E-45 368.8 23.8 213 482-702 4-245 (326)
210 PRK13538 cytochrome c biogenes 100.0 5E-41 1.1E-45 345.0 22.1 196 482-692 2-202 (204)
211 PRK14270 phosphate ABC transpo 100.0 6.4E-41 1.4E-45 354.7 23.4 211 481-701 4-236 (251)
212 PRK14254 phosphate ABC transpo 100.0 7.8E-41 1.7E-45 361.1 24.1 211 480-700 38-269 (285)
213 PRK14243 phosphate transporter 100.0 8.7E-41 1.9E-45 356.7 24.2 211 481-701 10-249 (264)
214 PRK14271 phosphate ABC transpo 100.0 1.4E-40 3.1E-45 357.4 25.2 212 481-702 21-253 (276)
215 PRK14241 phosphate transporter 100.0 7.9E-41 1.7E-45 355.6 23.0 211 481-701 4-243 (258)
216 PRK13536 nodulation factor exp 100.0 6.3E-41 1.4E-45 369.8 22.6 206 481-701 41-262 (340)
217 PRK14252 phosphate ABC transpo 100.0 1.1E-40 2.5E-45 355.8 23.8 213 479-701 14-250 (265)
218 PRK11144 modC molybdate transp 100.0 9.6E-41 2.1E-45 370.4 23.9 205 482-703 2-221 (352)
219 PRK14272 phosphate ABC transpo 100.0 1.1E-40 2.4E-45 352.7 23.2 212 481-702 4-238 (252)
220 TIGR03415 ABC_choXWV_ATP choli 100.0 7E-41 1.5E-45 373.2 22.7 203 486-702 29-256 (382)
221 PRK14275 phosphate ABC transpo 100.0 1.3E-40 2.8E-45 359.5 23.8 212 480-701 38-271 (286)
222 PRK15093 antimicrobial peptide 100.0 1.3E-40 2.7E-45 366.5 24.0 210 482-702 4-250 (330)
223 cd03246 ABCC_Protease_Secretio 100.0 7.6E-41 1.7E-45 335.1 20.3 167 482-692 1-168 (173)
224 TIGR01277 thiQ thiamine ABC tr 100.0 1.4E-40 2.9E-45 343.8 22.7 187 482-686 1-197 (213)
225 PRK09473 oppD oligopeptide tra 100.0 1.1E-40 2.4E-45 366.6 23.3 214 481-702 12-253 (330)
226 PRK13540 cytochrome c biogenes 100.0 1.4E-40 3E-45 340.7 21.5 193 482-689 2-197 (200)
227 PRK14255 phosphate ABC transpo 100.0 1.8E-40 3.9E-45 351.4 22.7 211 481-701 5-237 (252)
228 cd03299 ABC_ModC_like Archeal 100.0 2E-40 4.4E-45 347.8 22.7 203 482-701 1-220 (235)
229 PRK15112 antimicrobial peptide 100.0 2.1E-40 4.5E-45 354.4 23.1 211 481-702 4-241 (267)
230 PRK14264 phosphate ABC transpo 100.0 2.6E-40 5.6E-45 360.3 23.9 211 480-700 44-289 (305)
231 PRK13547 hmuV hemin importer A 100.0 2.9E-40 6.3E-45 354.3 24.0 205 482-700 2-244 (272)
232 PRK14263 phosphate ABC transpo 100.0 3.4E-40 7.4E-45 351.7 23.9 211 481-701 8-246 (261)
233 TIGR03608 L_ocin_972_ABC putat 100.0 1.2E-40 2.7E-45 341.6 19.6 192 484-690 1-204 (206)
234 PRK09984 phosphonate/organopho 100.0 2.7E-40 5.8E-45 352.3 22.9 204 481-698 4-240 (262)
235 PRK11701 phnK phosphonate C-P 100.0 2.7E-40 5.9E-45 351.4 22.9 213 481-702 6-243 (258)
236 TIGR01188 drrA daunorubicin re 100.0 1.4E-40 3.1E-45 361.8 21.1 198 490-702 2-215 (302)
237 PRK14246 phosphate ABC transpo 100.0 2.7E-40 5.9E-45 351.7 22.4 213 480-702 9-243 (257)
238 TIGR02982 heterocyst_DevA ABC 100.0 2.3E-40 4.9E-45 343.8 21.0 200 482-693 2-215 (220)
239 COG1131 CcmA ABC-type multidru 100.0 2.8E-40 6.1E-45 357.7 21.6 208 481-702 4-228 (293)
240 PRK15056 manganese/iron transp 100.0 4.9E-40 1.1E-44 352.4 22.4 203 481-699 6-229 (272)
241 TIGR02142 modC_ABC molybdenum 100.0 5.2E-40 1.1E-44 364.8 23.3 202 486-703 4-224 (354)
242 PRK11248 tauB taurine transpor 100.0 5E-40 1.1E-44 349.3 22.0 192 482-692 2-202 (255)
243 cd03229 ABC_Class3 This class 100.0 4.9E-40 1.1E-44 330.8 20.8 169 482-692 1-174 (178)
244 PRK14258 phosphate ABC transpo 100.0 6.9E-40 1.5E-44 349.2 23.0 212 480-701 6-246 (261)
245 PRK14265 phosphate ABC transpo 100.0 1.6E-39 3.5E-44 348.9 24.9 211 480-700 19-258 (274)
246 COG4175 ProV ABC-type proline/ 100.0 2.1E-40 4.6E-45 348.1 17.6 215 481-706 4-260 (386)
247 cd03230 ABC_DR_subfamily_A Thi 100.0 8E-40 1.7E-44 327.7 21.0 167 482-693 1-169 (173)
248 TIGR01189 ccmA heme ABC export 100.0 5.1E-40 1.1E-44 335.8 19.8 186 482-682 1-190 (198)
249 cd03234 ABCG_White The White s 100.0 3.9E-40 8.5E-45 343.4 18.5 195 482-690 4-215 (226)
250 PRK10418 nikD nickel transport 100.0 1.7E-39 3.7E-44 344.7 23.2 208 481-702 4-232 (254)
251 TIGR03740 galliderm_ABC gallid 100.0 1.3E-39 2.9E-44 338.6 21.7 196 482-695 1-208 (223)
252 PRK13539 cytochrome c biogenes 100.0 1.7E-39 3.7E-44 334.5 22.0 193 482-693 3-199 (207)
253 TIGR01166 cbiO cobalt transpor 100.0 5E-40 1.1E-44 333.6 17.7 175 496-681 4-189 (190)
254 cd03228 ABCC_MRP_Like The MRP 100.0 2E-39 4.4E-44 324.3 21.5 167 482-692 1-167 (171)
255 PRK10419 nikE nickel transport 100.0 1.7E-39 3.7E-44 347.6 22.2 210 482-702 4-243 (268)
256 cd03297 ABC_ModC_molybdenum_tr 100.0 1.6E-39 3.5E-44 335.9 20.5 192 482-691 2-204 (214)
257 PRK09580 sufC cysteine desulfu 100.0 1.5E-39 3.2E-44 343.2 19.9 205 482-698 2-233 (248)
258 TIGR02323 CP_lyasePhnK phospho 100.0 4.1E-39 9E-44 341.1 23.3 208 481-701 3-239 (253)
259 PRK09544 znuC high-affinity zi 100.0 4.9E-39 1.1E-43 341.0 23.4 194 481-700 4-209 (251)
260 CHL00131 ycf16 sulfate ABC tra 100.0 4.7E-39 1E-43 340.3 23.2 204 481-697 7-238 (252)
261 cd03233 ABC_PDR_domain1 The pl 100.0 2.9E-39 6.2E-44 331.8 20.5 181 481-690 3-191 (202)
262 cd03223 ABCD_peroxisomal_ALDP 100.0 2.9E-39 6.2E-44 322.0 19.5 160 482-692 1-160 (166)
263 cd03215 ABC_Carb_Monos_II This 100.0 4.2E-39 9.2E-44 325.1 20.5 169 481-693 4-178 (182)
264 COG1123 ATPase components of v 100.0 3.6E-39 7.7E-44 365.6 21.7 213 480-703 279-522 (539)
265 COG4555 NatA ABC-type Na+ tran 100.0 1.5E-39 3.3E-44 323.3 16.4 208 482-703 2-225 (245)
266 TIGR02324 CP_lyasePhnL phospho 100.0 5.8E-39 1.3E-43 333.8 21.5 200 482-691 2-221 (224)
267 PRK13543 cytochrome c biogenes 100.0 7.9E-39 1.7E-43 331.2 22.3 196 481-693 11-211 (214)
268 PRK13541 cytochrome c biogenes 100.0 4E-39 8.8E-44 328.6 19.2 186 482-686 2-190 (195)
269 COG0410 LivF ABC-type branched 100.0 6.6E-39 1.4E-43 326.6 20.6 214 481-702 3-228 (237)
270 cd03217 ABC_FeS_Assembly ABC-t 100.0 9E-39 2E-43 327.6 21.3 177 482-698 1-191 (200)
271 cd03213 ABCG_EPDR ABCG transpo 100.0 6.5E-39 1.4E-43 327.2 19.6 173 481-690 3-183 (194)
272 cd03214 ABC_Iron-Siderophores_ 100.0 5.9E-39 1.3E-43 323.5 18.7 169 483-692 1-171 (180)
273 PRK15439 autoinducer 2 ABC tra 100.0 2.1E-38 4.5E-43 368.1 25.0 206 481-700 11-229 (510)
274 cd03232 ABC_PDR_domain2 The pl 100.0 9E-39 2E-43 325.5 18.8 174 481-692 3-182 (192)
275 PRK10261 glutathione transport 100.0 2E-38 4.4E-43 376.1 23.9 210 481-701 313-554 (623)
276 PRK09700 D-allose transporter 100.0 1.5E-38 3.3E-43 369.2 21.8 205 481-699 5-233 (510)
277 PRK13549 xylose transporter AT 100.0 2.4E-38 5.1E-43 367.3 23.1 204 481-698 5-230 (506)
278 COG4598 HisP ABC-type histidin 100.0 4.2E-39 9.1E-44 314.4 14.0 209 481-703 6-244 (256)
279 PRK03695 vitamin B12-transport 100.0 4.7E-38 1E-42 332.7 22.7 200 482-700 1-222 (248)
280 COG4619 ABC-type uncharacteriz 100.0 1.1E-38 2.4E-43 308.6 15.6 185 496-690 15-206 (223)
281 PRK10762 D-ribose transporter 100.0 3.9E-38 8.5E-43 365.1 23.1 204 481-698 4-228 (501)
282 cd03267 ABC_NatA_like Similar 100.0 3.5E-38 7.6E-43 331.2 19.6 185 497-693 34-228 (236)
283 TIGR02770 nickel_nikD nickel i 100.0 5E-38 1.1E-42 328.6 20.3 194 499-702 1-217 (230)
284 TIGR01184 ntrCD nitrate transp 100.0 5.5E-38 1.2E-42 328.5 20.4 183 500-698 1-202 (230)
285 cd03216 ABC_Carb_Monos_I This 100.0 1.1E-37 2.4E-42 309.6 20.5 153 482-692 1-155 (163)
286 COG0444 DppD ABC-type dipeptid 100.0 1.3E-37 2.8E-42 331.7 22.0 211 482-703 2-246 (316)
287 COG0411 LivG ABC-type branched 100.0 2.5E-38 5.4E-43 324.7 15.9 209 482-704 5-235 (250)
288 PRK11288 araG L-arabinose tran 100.0 1.2E-37 2.7E-42 360.9 23.5 200 481-694 4-223 (501)
289 PRK10938 putative molybdenum t 100.0 9.8E-38 2.1E-42 360.7 22.5 203 482-700 4-224 (490)
290 PRK15134 microcin C ABC transp 100.0 8E-38 1.7E-42 364.8 21.5 209 481-701 275-516 (529)
291 PRK10982 galactose/methyl gala 100.0 1.2E-37 2.5E-42 360.3 22.4 201 484-698 1-221 (491)
292 COG4181 Predicted ABC-type tra 100.0 8.2E-38 1.8E-42 303.5 16.5 195 481-686 6-214 (228)
293 COG4608 AppF ABC-type oligopep 100.0 8.6E-38 1.9E-42 326.7 17.6 182 481-703 4-202 (268)
294 PRK10261 glutathione transport 100.0 1.3E-37 2.7E-42 369.3 20.4 214 480-701 11-259 (623)
295 COG1137 YhbG ABC-type (unclass 100.0 1.5E-38 3.2E-43 315.9 10.0 208 481-702 4-230 (243)
296 PRK15134 microcin C ABC transp 100.0 3.7E-37 8E-42 359.2 23.1 210 481-701 5-247 (529)
297 TIGR02633 xylG D-xylose ABC tr 100.0 3.3E-37 7.2E-42 357.2 22.3 203 482-697 2-227 (500)
298 TIGR03269 met_CoM_red_A2 methy 100.0 2.9E-37 6.2E-42 359.4 21.3 209 481-700 279-517 (520)
299 PRK13549 xylose transporter AT 100.0 2.7E-37 5.9E-42 358.5 20.5 206 481-697 259-491 (506)
300 COG1123 ATPase components of v 100.0 4.4E-37 9.5E-42 348.6 21.5 215 481-706 5-250 (539)
301 TIGR03771 anch_rpt_ABC anchore 100.0 3.5E-37 7.6E-42 321.0 18.5 180 505-700 1-201 (223)
302 TIGR03269 met_CoM_red_A2 methy 100.0 4.1E-37 8.9E-42 358.1 21.1 205 482-700 1-258 (520)
303 PLN03211 ABC transporter G-25; 100.0 5.4E-37 1.2E-41 364.6 21.7 194 496-700 80-296 (659)
304 KOG0060|consensus 100.0 5.1E-34 1.1E-38 318.9 43.8 345 309-686 255-634 (659)
305 PRK10535 macrolide transporter 100.0 1.6E-36 3.4E-41 361.3 25.0 208 481-699 4-231 (648)
306 COG4525 TauB ABC-type taurine 100.0 2.9E-37 6.4E-42 305.3 15.2 188 482-686 4-200 (259)
307 COG4172 ABC-type uncharacteriz 100.0 1.3E-36 2.8E-41 327.4 21.1 213 480-704 275-520 (534)
308 COG1129 MglA ABC-type sugar tr 100.0 2.2E-36 4.8E-41 340.8 22.6 197 481-691 8-217 (500)
309 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.2E-36 2.5E-41 317.4 18.8 186 482-692 23-215 (224)
310 PRK09700 D-allose transporter 100.0 1.1E-36 2.5E-41 353.6 20.7 195 481-691 265-481 (510)
311 TIGR00955 3a01204 The Eye Pigm 100.0 4.6E-37 1E-41 364.1 16.4 210 480-700 16-256 (617)
312 PRK13546 teichoic acids export 100.0 5.2E-36 1.1E-40 320.1 21.8 200 481-704 4-236 (264)
313 TIGR01257 rim_protein retinal- 100.0 3.2E-36 6.8E-41 384.3 23.5 213 480-705 927-1154(2272)
314 COG4161 ArtP ABC-type arginine 100.0 1.9E-36 4.2E-41 291.2 16.2 204 481-698 2-228 (242)
315 TIGR02633 xylG D-xylose ABC tr 100.0 3E-36 6.6E-41 349.2 20.1 201 481-691 257-475 (500)
316 TIGR01257 rim_protein retinal- 100.0 4.4E-34 9.6E-39 364.7 40.4 212 480-704 1936-2163(2272)
317 COG3845 ABC-type uncharacteriz 100.0 7.7E-36 1.7E-40 330.4 20.7 192 481-686 4-207 (501)
318 PRK13545 tagH teichoic acids e 100.0 1.7E-35 3.7E-40 336.9 24.0 201 480-704 20-236 (549)
319 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.1E-36 6.7E-41 320.3 16.1 193 485-691 4-211 (255)
320 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.1E-35 2.3E-40 314.6 19.4 179 489-692 1-189 (246)
321 TIGR00956 3a01205 Pleiotropic 100.0 9.8E-36 2.1E-40 378.2 21.6 206 481-697 759-990 (1394)
322 PRK10762 D-ribose transporter 100.0 1.1E-35 2.3E-40 344.7 19.6 198 481-696 257-480 (501)
323 PRK11288 araG L-arabinose tran 100.0 9.8E-36 2.1E-40 345.0 19.0 199 481-697 257-482 (501)
324 PRK15064 ABC transporter ATP-b 100.0 3E-35 6.5E-40 343.3 23.1 194 480-700 318-525 (530)
325 PRK11819 putative ABC transpor 100.0 2.2E-35 4.7E-40 346.2 21.8 203 481-701 6-251 (556)
326 PRK15064 ABC transporter ATP-b 100.0 2.8E-35 6.1E-40 343.5 21.8 193 482-700 2-242 (530)
327 TIGR01187 potA spermidine/putr 100.0 3.7E-35 8.1E-40 322.5 19.1 175 515-702 1-192 (325)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.3E-35 1.1E-39 342.7 21.4 202 481-700 4-248 (552)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-34 2.3E-39 282.7 19.2 140 482-692 1-140 (144)
330 COG4559 ABC-type hemin transpo 100.0 1.5E-34 3.3E-39 289.8 19.4 206 482-701 2-231 (259)
331 PRK15439 autoinducer 2 ABC tra 100.0 7.7E-35 1.7E-39 338.3 19.2 201 481-699 268-491 (510)
332 PRK10938 putative molybdenum t 100.0 8E-35 1.7E-39 336.5 19.0 199 480-692 259-476 (490)
333 PRK10982 galactose/methyl gala 100.0 1.7E-34 3.7E-39 333.9 21.0 197 481-692 250-464 (491)
334 COG4148 ModC ABC-type molybdat 100.0 7.4E-35 1.6E-39 301.8 15.3 190 502-702 16-220 (352)
335 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1E-33 2.3E-38 278.7 19.8 152 483-692 1-153 (157)
336 PRK15177 Vi polysaccharide exp 100.0 6.2E-34 1.3E-38 294.8 18.2 177 499-699 2-191 (213)
337 COG4136 ABC-type uncharacteriz 100.0 2.5E-34 5.5E-39 273.8 13.9 199 481-696 2-211 (213)
338 cd03222 ABC_RNaseL_inhibitor T 100.0 2.1E-33 4.5E-38 282.7 18.9 140 485-692 4-145 (177)
339 PRK13409 putative ATPase RIL; 100.0 2.4E-33 5.3E-38 329.6 21.8 184 481-692 340-527 (590)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.9E-33 6.3E-38 328.0 21.9 188 480-693 321-514 (552)
341 COG4604 CeuD ABC-type enteroch 100.0 5.6E-34 1.2E-38 282.6 13.4 206 482-701 2-226 (252)
342 PRK11819 putative ABC transpor 100.0 4.7E-33 1E-37 326.5 23.5 187 480-693 323-516 (556)
343 PRK11147 ABC transporter ATPas 100.0 4.1E-33 8.9E-38 331.6 21.8 185 481-692 319-510 (635)
344 PLN03073 ABC transporter F fam 100.0 5.4E-33 1.2E-37 332.4 22.7 187 480-692 507-697 (718)
345 PRK10636 putative ABC transpor 100.0 5E-33 1.1E-37 330.6 22.1 185 481-692 312-500 (638)
346 PLN03140 ABC transporter G fam 100.0 8.2E-33 1.8E-37 350.9 23.0 207 480-696 866-1106(1470)
347 COG1101 PhnK ABC-type uncharac 100.0 7.3E-33 1.6E-37 278.2 14.6 208 496-703 18-233 (263)
348 cd03238 ABC_UvrA The excision 100.0 2.4E-32 5.1E-37 274.9 17.4 152 496-692 7-161 (176)
349 PRK10636 putative ABC transpor 100.0 4.6E-32 1E-36 322.4 22.0 193 482-700 2-236 (638)
350 PRK13409 putative ATPase RIL; 100.0 7.8E-33 1.7E-37 325.3 14.9 191 485-692 77-284 (590)
351 PF00005 ABC_tran: ABC transpo 100.0 8.5E-33 1.8E-37 264.9 11.7 136 500-649 1-137 (137)
352 COG4172 ABC-type uncharacteriz 100.0 5.6E-32 1.2E-36 291.7 18.7 213 481-704 6-251 (534)
353 COG4152 ABC-type uncharacteriz 100.0 1.4E-31 3.1E-36 273.2 16.4 208 481-703 2-222 (300)
354 COG1119 ModF ABC-type molybden 100.0 1.2E-31 2.6E-36 275.5 15.6 200 480-693 30-255 (257)
355 TIGR00956 3a01205 Pleiotropic 100.0 8.2E-32 1.8E-36 342.5 17.6 195 497-699 74-299 (1394)
356 PRK11147 ABC transporter ATPas 100.0 4E-31 8.6E-36 314.6 22.3 190 482-700 4-243 (635)
357 COG4674 Uncharacterized ABC-ty 100.0 3.6E-31 7.9E-36 262.2 15.3 206 481-700 5-235 (249)
358 PLN03140 ABC transporter G fam 100.0 2.9E-31 6.3E-36 336.9 16.8 201 497-700 178-427 (1470)
359 COG0396 sufC Cysteine desulfur 100.0 5E-30 1.1E-34 260.8 20.8 208 481-700 3-233 (251)
360 COG4167 SapF ABC-type antimicr 100.0 1.6E-30 3.5E-35 254.9 14.0 211 482-703 5-242 (267)
361 KOG0061|consensus 100.0 3.3E-30 7.1E-35 304.0 18.1 211 480-700 24-260 (613)
362 KOG0064|consensus 100.0 3.8E-27 8.2E-32 260.5 40.6 409 242-684 223-674 (728)
363 COG0488 Uup ATPase components 100.0 8.5E-30 1.8E-34 293.7 20.0 193 481-694 3-225 (530)
364 PLN03073 ABC transporter F fam 100.0 5.7E-30 1.2E-34 306.5 17.8 214 480-700 176-431 (718)
365 COG4133 CcmA ABC-type transpor 100.0 6.6E-29 1.4E-33 245.7 13.7 189 482-685 3-196 (209)
366 COG0488 Uup ATPase components 100.0 1.1E-27 2.3E-32 276.4 24.5 191 479-694 319-511 (530)
367 COG1134 TagH ABC-type polysacc 100.0 3.9E-28 8.6E-33 249.9 17.7 184 496-701 39-237 (249)
368 cd03270 ABC_UvrA_I The excisio 100.0 5E-28 1.1E-32 253.0 16.6 176 496-686 7-206 (226)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 1.6E-28 3.5E-33 251.6 12.2 160 501-690 14-186 (197)
370 COG4107 PhnK ABC-type phosphon 100.0 8E-28 1.7E-32 234.3 13.7 210 481-703 6-244 (258)
371 COG4778 PhnL ABC-type phosphon 99.9 1.3E-27 2.8E-32 232.2 13.2 204 481-694 4-227 (235)
372 COG4586 ABC-type uncharacteriz 99.9 6.6E-28 1.4E-32 249.9 11.7 195 497-703 37-249 (325)
373 cd03271 ABC_UvrA_II The excisi 99.9 6.1E-27 1.3E-31 249.1 16.2 180 497-686 8-239 (261)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.5E-27 7.6E-32 248.2 13.3 191 481-692 3-233 (243)
375 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.8E-27 6.1E-32 245.0 11.5 188 481-692 5-206 (213)
376 KOG0059|consensus 99.9 5.2E-26 1.1E-30 278.9 17.5 214 480-706 563-793 (885)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4E-26 8.7E-31 242.1 12.2 196 481-690 5-239 (251)
378 cd03240 ABC_Rad50 The catalyti 99.9 8.6E-25 1.9E-29 225.2 12.9 160 504-692 17-195 (204)
379 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.7E-25 5.8E-30 230.3 9.1 181 481-690 5-200 (212)
380 KOG0927|consensus 99.9 1.3E-24 2.8E-29 242.4 11.5 185 480-689 388-576 (614)
381 PF00664 ABC_membrane: ABC tra 99.9 5.1E-21 1.1E-25 198.0 34.5 221 192-434 54-275 (275)
382 COG4138 BtuD ABC-type cobalami 99.9 4.8E-24 1E-28 208.3 8.4 201 482-701 4-222 (248)
383 PRK00349 uvrA excinuclease ABC 99.9 6.8E-23 1.5E-27 249.7 19.4 91 613-703 823-930 (943)
384 KOG0065|consensus 99.9 1.8E-23 3.8E-28 252.9 13.9 192 496-697 803-1018(1391)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.2E-23 4.8E-28 220.7 12.4 202 481-692 3-232 (247)
386 PRK00635 excinuclease ABC subu 99.9 1.6E-22 3.6E-27 255.6 19.4 205 481-701 600-907 (1809)
387 COG1129 MglA ABC-type sugar tr 99.9 2.1E-22 4.6E-27 227.9 17.2 204 481-695 263-477 (500)
388 TIGR00630 uvra excinuclease AB 99.9 4.8E-21 1E-25 233.2 20.5 90 609-698 816-923 (924)
389 KOG0062|consensus 99.8 3.9E-21 8.5E-26 213.7 13.2 197 479-705 78-290 (582)
390 KOG0066|consensus 99.8 7.1E-21 1.5E-25 206.6 12.6 193 480-698 585-782 (807)
391 KOG0062|consensus 99.8 1.7E-20 3.7E-25 208.6 14.8 184 479-686 360-546 (582)
392 COG3845 ABC-type uncharacteriz 99.8 4.4E-20 9.5E-25 205.6 17.8 201 480-691 256-475 (501)
393 KOG0927|consensus 99.8 3.4E-20 7.4E-25 207.3 16.9 216 479-702 73-311 (614)
394 cd03276 ABC_SMC6_euk Eukaryoti 99.8 7.2E-21 1.6E-25 195.3 10.0 161 500-686 12-183 (198)
395 COG4170 SapD ABC-type antimicr 99.8 3.5E-20 7.6E-25 185.8 13.8 210 483-703 5-251 (330)
396 COG1245 Predicted ATPase, RNas 99.8 1.2E-19 2.6E-24 199.1 17.1 180 489-695 343-533 (591)
397 cd03239 ABC_SMC_head The struc 99.8 5.8E-19 1.3E-23 178.2 13.4 78 603-686 83-165 (178)
398 COG2401 ABC-type ATPase fused 99.8 1E-18 2.2E-23 189.8 14.0 195 479-695 355-585 (593)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2.6E-18 5.6E-23 178.4 10.7 169 501-684 15-197 (213)
400 cd03241 ABC_RecN RecN ATPase i 99.8 9.5E-18 2.1E-22 180.7 15.0 68 620-687 170-241 (276)
401 PRK00635 excinuclease ABC subu 99.7 2.1E-17 4.5E-22 209.8 19.8 195 499-703 1505-1799(1809)
402 COG0178 UvrA Excinuclease ATPa 99.7 2E-17 4.3E-22 192.3 17.3 91 613-703 815-922 (935)
403 cd03280 ABC_MutS2 MutS2 homolo 99.7 9.2E-18 2E-22 172.3 11.4 131 500-686 17-158 (200)
404 cd01128 rho_factor Transcripti 99.7 4.5E-18 9.7E-23 180.2 9.2 182 504-703 10-220 (249)
405 KOG0065|consensus 99.7 1.1E-17 2.4E-22 203.1 10.7 195 496-700 127-351 (1391)
406 KOG2355|consensus 99.7 7.6E-17 1.6E-21 161.7 14.6 203 479-698 11-235 (291)
407 COG1245 Predicted ATPase, RNas 99.7 1.6E-17 3.4E-22 182.6 10.3 182 486-686 79-280 (591)
408 cd03283 ABC_MutS-like MutS-lik 99.7 3.4E-17 7.4E-22 168.3 9.0 136 497-686 14-155 (199)
409 cd03227 ABC_Class2 ABC-type Cl 99.7 1.3E-16 2.8E-21 158.6 12.4 129 504-687 15-149 (162)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.7 2.9E-16 6.3E-21 164.0 11.3 138 496-686 16-160 (222)
411 cd00820 PEPCK_HprK Phosphoenol 99.7 8.3E-17 1.8E-21 148.6 5.9 76 497-580 2-77 (107)
412 TIGR00606 rad50 rad50. This fa 99.6 3.9E-16 8.5E-21 199.6 12.8 113 569-686 1153-1277(1311)
413 cd03242 ABC_RecF RecF is a rec 99.6 2.1E-15 4.6E-20 162.0 13.7 186 500-692 12-264 (270)
414 cd03243 ABC_MutS_homologs The 99.6 2E-15 4.4E-20 155.1 10.1 134 503-686 22-158 (202)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.5 2.5E-14 5.5E-19 147.6 10.4 140 496-686 15-158 (204)
416 KOG0066|consensus 99.5 2.6E-14 5.6E-19 156.0 7.0 199 481-691 264-481 (807)
417 TIGR02858 spore_III_AA stage I 99.5 2.1E-13 4.5E-18 146.3 13.1 122 511-684 112-234 (270)
418 cd03284 ABC_MutS1 MutS1 homolo 99.5 1.2E-13 2.7E-18 143.8 10.3 136 497-686 18-160 (216)
419 PRK00349 uvrA excinuclease ABC 99.5 9.8E-14 2.1E-18 170.1 10.8 88 614-701 483-586 (943)
420 TIGR00630 uvra excinuclease AB 99.5 1.5E-13 3.1E-18 168.3 10.8 87 614-700 481-583 (924)
421 KOG0063|consensus 99.4 4.7E-13 1E-17 146.6 11.3 178 489-696 343-535 (592)
422 PF02463 SMC_N: RecF/RecN/SMC 99.4 3.1E-13 6.6E-18 140.3 8.8 164 501-686 16-206 (220)
423 PRK00064 recF recombination pr 99.4 8.5E-12 1.8E-16 139.6 16.1 64 619-684 272-344 (361)
424 PTZ00132 GTP-binding nuclear p 99.4 1.2E-12 2.6E-17 135.4 8.1 43 625-667 157-204 (215)
425 PHA02562 46 endonuclease subun 99.3 1.2E-12 2.6E-17 154.3 8.1 100 589-690 432-548 (562)
426 cd03281 ABC_MSH5_euk MutS5 hom 99.3 5.8E-12 1.3E-16 131.0 12.1 135 498-685 17-160 (213)
427 TIGR01069 mutS2 MutS2 family p 99.3 1.7E-11 3.6E-16 148.7 16.9 151 480-684 294-450 (771)
428 smart00534 MUTSac ATPase domai 99.2 9.3E-12 2E-16 126.5 7.4 67 617-686 58-129 (185)
429 PRK10733 hflB ATP-dependent me 99.2 4E-12 8.7E-17 151.9 1.8 165 313-534 37-209 (644)
430 cd03287 ABC_MSH3_euk MutS3 hom 99.2 4.7E-11 1E-15 124.9 8.4 137 497-685 18-160 (222)
431 PRK10869 recombination and rep 99.1 2.6E-10 5.7E-15 134.1 11.0 73 619-691 429-505 (553)
432 KOG0063|consensus 99.1 7.9E-11 1.7E-15 129.4 5.7 162 508-684 98-278 (592)
433 PRK07721 fliI flagellum-specif 99.1 1.2E-09 2.6E-14 124.7 15.4 171 496-697 145-340 (438)
434 TIGR00634 recN DNA repair prot 99.1 2.3E-10 4.9E-15 135.3 9.8 70 619-688 439-512 (563)
435 TIGR03238 dnd_assoc_3 dnd syst 99.1 8.3E-11 1.8E-15 133.1 4.6 68 497-567 19-87 (504)
436 PRK00409 recombination and DNA 99.0 5.6E-10 1.2E-14 135.9 10.5 136 499-686 317-457 (782)
437 TIGR00767 rho transcription te 99.0 1E-09 2.2E-14 122.5 10.2 83 446-537 102-195 (415)
438 TIGR02788 VirB11 P-type DNA tr 99.0 1.6E-09 3.5E-14 118.8 11.6 136 503-699 137-280 (308)
439 PRK08533 flagellar accessory p 99.0 2.4E-09 5.2E-14 112.7 11.2 148 481-681 7-164 (230)
440 PRK13695 putative NTPase; Prov 98.9 2.2E-09 4.8E-14 107.7 8.9 72 618-692 76-156 (174)
441 PRK06793 fliI flagellum-specif 98.9 5.2E-09 1.1E-13 118.7 12.6 164 481-694 130-305 (432)
442 COG0178 UvrA Excinuclease ATPa 98.9 3.5E-09 7.6E-14 124.6 11.2 102 601-703 463-580 (935)
443 smart00382 AAA ATPases associa 98.9 3E-08 6.4E-13 92.4 14.9 117 509-678 1-125 (148)
444 PRK14079 recF recombination pr 98.9 1.4E-08 3E-13 113.4 14.1 48 619-666 262-318 (349)
445 PRK00300 gmk guanylate kinase; 98.9 3.4E-09 7.4E-14 108.8 8.4 69 508-582 3-83 (205)
446 TIGR02168 SMC_prok_B chromosom 98.9 2.5E-09 5.5E-14 135.8 9.1 70 617-686 1086-1159(1179)
447 cd03286 ABC_MSH6_euk MutS6 hom 98.9 1.3E-08 2.8E-13 106.3 11.0 140 496-686 16-160 (218)
448 PF13304 AAA_21: AAA domain; P 98.8 3.3E-09 7.1E-14 108.6 6.2 64 619-682 235-302 (303)
449 cd01120 RecA-like_NTPases RecA 98.8 1.4E-08 3E-13 98.6 10.1 131 512-684 1-142 (165)
450 cd01131 PilT Pilus retraction 98.8 1.3E-08 2.9E-13 104.6 10.3 116 512-690 3-119 (198)
451 TIGR00618 sbcc exonuclease Sbc 98.8 9.1E-09 2E-13 130.0 10.5 74 619-692 949-1033(1042)
452 PRK01156 chromosome segregatio 98.8 9.5E-09 2.1E-13 128.0 9.8 70 617-686 798-877 (895)
453 cd01124 KaiC KaiC is a circadi 98.8 2.6E-08 5.7E-13 100.2 11.2 69 613-681 64-142 (187)
454 PRK03918 chromosome segregatio 98.8 1.2E-08 2.6E-13 126.7 8.7 74 619-693 787-867 (880)
455 TIGR02169 SMC_prok_A chromosom 98.8 1.4E-08 3E-13 129.4 8.7 68 619-686 1073-1144(1164)
456 PRK06002 fliI flagellum-specif 98.8 1.3E-08 2.9E-13 115.7 7.6 86 479-567 137-229 (450)
457 PRK10246 exonuclease subunit S 98.7 3.3E-08 7.2E-13 124.6 11.2 74 618-691 947-1029(1047)
458 PRK06067 flagellar accessory p 98.7 2.4E-07 5.1E-12 97.5 13.8 62 620-681 100-167 (234)
459 PRK12369 putative transporter; 98.6 0.00024 5.2E-09 78.7 35.4 62 398-459 259-320 (326)
460 PRK13830 conjugal transfer pro 98.6 1.5E-07 3.2E-12 115.9 11.2 50 635-684 649-700 (818)
461 PRK07196 fliI flagellum-specif 98.6 3.7E-08 8E-13 112.0 5.2 83 496-579 142-234 (434)
462 PRK02224 chromosome segregatio 98.5 1.8E-07 3.9E-12 116.5 9.2 73 619-691 780-866 (880)
463 PRK11098 microcin B17 transpor 98.5 0.00023 4.9E-09 80.9 33.0 233 191-460 150-395 (409)
464 PF06472 ABC_membrane_2: ABC t 98.5 0.00034 7.4E-09 76.0 33.0 168 190-359 77-249 (281)
465 PRK13891 conjugal transfer pro 98.5 1.5E-06 3.3E-11 107.6 16.4 69 631-699 680-752 (852)
466 PRK01889 GTPase RsgA; Reviewed 98.5 1E-07 2.2E-12 106.7 5.3 99 499-600 184-286 (356)
467 COG3910 Predicted ATPase [Gene 98.5 4E-07 8.6E-12 91.4 8.6 71 620-691 129-200 (233)
468 cd01130 VirB11-like_ATPase Typ 98.5 1.7E-07 3.7E-12 95.3 5.8 79 499-580 14-95 (186)
469 PRK06995 flhF flagellar biosyn 98.4 1.9E-07 4E-12 107.6 5.3 143 501-680 247-403 (484)
470 TIGR00611 recf recF protein. A 98.4 5E-07 1.1E-11 101.5 6.6 64 619-684 274-346 (365)
471 TIGR02524 dot_icm_DotB Dot/Icm 98.4 5.2E-07 1.1E-11 101.0 6.4 88 508-597 132-234 (358)
472 PRK08149 ATP synthase SpaL; Va 98.4 3.8E-07 8.1E-12 103.7 5.3 70 496-566 138-214 (428)
473 PRK09825 idnK D-gluconate kina 98.3 5.5E-07 1.2E-11 91.0 5.0 66 509-580 2-69 (176)
474 cd01125 repA Hexameric Replica 98.3 8.5E-07 1.8E-11 93.7 6.6 46 635-681 108-161 (239)
475 cd02023 UMPK Uridine monophosp 98.3 5E-07 1.1E-11 92.4 4.5 110 512-653 1-113 (198)
476 TIGR01420 pilT_fam pilus retra 98.3 4.4E-06 9.5E-11 93.2 12.2 117 507-685 119-236 (343)
477 PRK10078 ribose 1,5-bisphospho 98.3 8.2E-07 1.8E-11 90.2 5.4 55 510-567 2-56 (186)
478 TIGR02655 circ_KaiC circadian 98.3 1.3E-07 2.8E-12 110.0 -1.3 145 506-681 17-169 (484)
479 TIGR02680 conserved hypothetic 98.2 2.5E-06 5.4E-11 110.2 7.8 62 617-680 1244-1317(1353)
480 PRK06315 type III secretion sy 98.1 2.2E-06 4.9E-11 97.8 5.8 102 497-599 152-276 (442)
481 TIGR02903 spore_lon_C ATP-depe 98.1 6.7E-06 1.4E-10 98.4 9.9 108 510-665 175-291 (615)
482 TIGR00235 udk uridine kinase. 98.1 1.4E-06 3E-11 90.1 3.5 29 508-536 4-32 (207)
483 cd00009 AAA The AAA+ (ATPases 98.1 1.3E-05 2.8E-10 75.4 9.9 54 626-680 72-131 (151)
484 PRK13898 type IV secretion sys 98.1 1.2E-05 2.6E-10 99.3 12.1 52 634-685 638-691 (800)
485 TIGR02322 phosphon_PhnN phosph 98.1 3.6E-06 7.9E-11 84.6 6.3 62 510-572 1-78 (179)
486 PLN02796 D-glycerate 3-kinase 98.1 9.3E-07 2E-11 97.6 2.1 62 497-558 79-151 (347)
487 TIGR03263 guanyl_kin guanylate 98.1 2.3E-06 5E-11 85.9 4.0 76 510-594 1-88 (180)
488 PRK10416 signal recognition pa 98.1 9.5E-06 2.1E-10 89.6 9.2 61 508-568 112-178 (318)
489 PLN03210 Resistant to P. syrin 98.1 1.5E-05 3.2E-10 102.2 12.0 45 502-546 199-244 (1153)
490 cd00071 GMPK Guanosine monopho 98.0 1.6E-06 3.5E-11 84.1 1.5 72 513-593 2-86 (137)
491 cd01123 Rad51_DMC1_radA Rad51_ 98.0 1.9E-05 4E-10 82.8 9.6 68 507-583 16-93 (235)
492 PRK15494 era GTPase Era; Provi 98.0 3.2E-06 6.8E-11 94.2 3.8 54 478-533 15-75 (339)
493 PRK00454 engB GTP-binding prot 98.0 6.5E-06 1.4E-10 83.2 5.5 52 613-668 140-194 (196)
494 TIGR00101 ureG urease accessor 98.0 8.6E-06 1.9E-10 84.0 6.3 57 512-569 3-59 (199)
495 PRK03846 adenylylsulfate kinas 98.0 5.3E-06 1.2E-10 85.2 4.4 56 508-567 22-78 (198)
496 cd01876 YihA_EngB The YihA (En 98.0 2.9E-05 6.3E-10 75.1 9.2 51 612-666 114-169 (170)
497 PRK07594 type III secretion sy 98.0 6.5E-06 1.4E-10 93.9 5.3 68 480-550 128-195 (433)
498 TIGR03497 FliI_clade2 flagella 98.0 8.5E-06 1.8E-10 92.8 5.5 54 496-550 124-177 (413)
499 PRK14722 flhF flagellar biosyn 97.9 2.9E-05 6.3E-10 87.2 9.5 39 497-535 124-162 (374)
500 PRK05399 DNA mismatch repair p 97.9 4.9E-05 1.1E-09 94.2 12.2 65 621-686 667-737 (854)
No 1
>KOG0058|consensus
Probab=100.00 E-value=3.1e-110 Score=953.94 Aligned_cols=559 Identities=28% Similarity=0.379 Sum_probs=488.4
Q ss_pred HHHHHHHHhhccCchhhHHHHHHHHHHHH--HHhhhhcccccccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 120 EMIKAMLTHIWPKDEPQIRNRVKVAMGLL--YAVDELNTGIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNE 197 (816)
Q Consensus 120 ~~~~~ll~~l~~~~~~~~~~~l~~~l~l~--~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~i~~~~~~~l~~ 197 (816)
..+++++.|.+|+++....+.++++++.+ .++|.+..-++ +.+..-+ .. ...+.-.++.+.++.++.++++.
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~i--d~~~~~~--~~--~~~~~~~~~~l~~l~~~~a~~~~ 206 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLI--DTISEGD--DS--ADALKRACTILLGLFLIGALANA 206 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHH--HHHHhcc--ch--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999998654433333333322 55565542111 1111100 00 12222233444555567788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4347 198 LRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYK 277 (816)
Q Consensus 198 lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~ 277 (816)
+|.+++...++++..++|.++|+++++++++|||++++||++||++.|+..+...+...+...+.+++.++. ++.+|++
T Consensus 207 ~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g-~~~~M~~ 285 (716)
T KOG0058|consen 207 IRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFG-GLGFMFS 285 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHhh
Confidence 999999999999999999999999999999999999999999999999999998888888888887776543 4556788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q psy4347 278 CGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAAL 357 (816)
Q Consensus 278 ~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~ 357 (816)
+||.|++++++.+|+++++..++.++.++..++.|++.+++++...|.+++++|||+|+.|+.|.+||.+..++..+...
T Consensus 286 ~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~ 365 (716)
T KOG0058|consen 286 LSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSK 365 (716)
T ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4347 358 KTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFL 437 (816)
Q Consensus 358 k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L 437 (816)
|. ....+.+....++...+..+.++++|++++..|+||.|+|++|+.|..++..++..+
T Consensus 366 k~---------------------a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~l 424 (716)
T KOG0058|consen 366 KE---------------------AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGL 424 (716)
T ss_pred HH---------------------HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 65 223334444455667778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeC
Q psy4347 438 GSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVG 517 (816)
Q Consensus 438 ~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG 517 (816)
+..|.++.++..+.+|+||++|.+|.+.......|. ...|.|+|+||+|+||.+++.+||+|+||+|+|||+||+||
T Consensus 425 s~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~---~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVG 501 (716)
T KOG0058|consen 425 SSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPD---HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVG 501 (716)
T ss_pred HHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccc---cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEEC
Confidence 999999999999999999999999987554211111 35789999999999999889999999999999999999999
Q ss_pred CCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHc
Q psy4347 518 GSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLA 597 (816)
Q Consensus 518 ~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a 597 (816)
||||||||+++||.+||+|++|+|++||+||++++..+||++||+|.|||.||++||+|||+||.+.+++|||.+||++|
T Consensus 502 PSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~A 581 (716)
T KOG0058|consen 502 PSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMA 581 (716)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEec
Q psy4347 598 DLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677 (816)
Q Consensus 598 ~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaH 677 (816)
++||||.++|+||||.|||+|.+|||||||||||||||++||+||||||||||||+++|..|+++|.+.++++|+|+|||
T Consensus 582 Nah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAH 661 (716)
T KOG0058|consen 582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAH 661 (716)
T ss_pred ChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhc
Q psy4347 678 RLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSM 709 (816)
Q Consensus 678 rls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~ 709 (816)
|||||++|| |+|+|.|+|+||++++++.|...
T Consensus 662 RLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~L 700 (716)
T KOG0058|consen 662 RLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKL 700 (716)
T ss_pred hhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHH
Confidence 999999999 99999999999999985544333
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.8e-104 Score=932.56 Aligned_cols=583 Identities=28% Similarity=0.386 Sum_probs=499.8
Q ss_pred cHHhhhccccceEEEeecCccccccccccchHHHHHHHHHhhccCchhhHHHHHH-HHHHHH-HHhhhhcccccccchhh
Q psy4347 88 TTTQKRNCFHPGASTLTTTNEIETAKEEVTSQEMIKAMLTHIWPKDEPQIRNRVK-VAMGLL-YAVDELNTGIVSDGALL 165 (816)
Q Consensus 88 ~~~e~~~~ftGi~l~~~P~~~f~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~l~-~~l~l~-~~id~~~~~~~~~~~~l 165 (816)
-.+||.++|||+++++.|+.+.+...+ ....+..+++.+++|++......+. +++.++ .+.|.+.+.++ |.++
T Consensus 111 ~~~e~~~~~tg~~l~l~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~vi--D~Vl 185 (709)
T COG2274 111 SLEEFEKLWTGIALLLAPTASRKFKDI---PPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVI--DKVL 185 (709)
T ss_pred CHHHHHHhhheeEEEEecccccccccc---cccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh
Confidence 339999999999999999977221111 1123455888888887533221111 111122 55566655432 3322
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhc
Q psy4347 166 ELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRG 245 (816)
Q Consensus 166 ~~~~~~~~~~~~~~~l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d 245 (816)
+.....++..+.+++++..++..++..+|.+++.+++.++..++..++|+|++++|++||+++++||+++|+..
T Consensus 186 -----~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~e- 259 (709)
T COG2274 186 -----PDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRE- 259 (709)
T ss_pred -----ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHHH-
Confidence 34445677778888888888999999999999999999999999999999999999999999999999999974
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4347 246 SRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDS 325 (816)
Q Consensus 246 ~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~ 325 (816)
.+.++++++..+...+..++. +++.++++++++|+|++++++.+|+++++.+++.+..++..++..+..++.++.+.|+
T Consensus 260 l~~Ir~flt~~~l~~iiD~~~-~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~ 338 (709)
T COG2274 260 LEQIREFLTGSILTLIIDLLF-ALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVET 338 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445666555433333222221 2233556788999999999999999999999988888887777778888999999999
Q ss_pred HchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 326 LINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIF 405 (816)
Q Consensus 326 l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~ 405 (816)
+.|++|||+.+.|.+...+|++...++.+.+.+. .......+....++..+..++++|+
T Consensus 339 i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~l~~v~iL~~ 397 (709)
T COG2274 339 IKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT---------------------EKLALILNTIKSLLQQLSSVLILWF 397 (709)
T ss_pred HhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887 4444555666678888999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEE
Q psy4347 406 AAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFR 485 (816)
Q Consensus 406 G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~ 485 (816)
|+++|++|++|+|+++||.++..++..|+..++..+.+++++..+.+|+.++++.|+|...+.. ....+...|+|+|+
T Consensus 398 G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~--~~~~~~~~g~I~~~ 475 (709)
T COG2274 398 GAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT--LIHLPKLQGEIEFE 475 (709)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc--cccccccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998543221 12223457899999
Q ss_pred eeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcC
Q psy4347 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ 565 (816)
Q Consensus 486 ~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q 565 (816)
||+|+|++ .++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+.++++.++|++||||+|
T Consensus 476 nvsf~y~~-~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q 554 (709)
T COG2274 476 NVSFRYGP-DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554 (709)
T ss_pred EEEEEeCC-CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcc
Confidence 99999986 34679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q psy4347 566 DPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645 (816)
Q Consensus 566 ~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLD 645 (816)
|++||+|||+|||++++|++++|++++||+.||+||||++||+||||+|||+|.+|||||||||+|||||++||+|||||
T Consensus 555 ~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 555 DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred cchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhh
Q psy4347 646 EATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAM 706 (816)
Q Consensus 646 E~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~ 706 (816)
|||||||++||+.|.++|.+..+++|+|+||||++++++|| |+|+++|+|+||++.+|.|+
T Consensus 635 EaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~ 702 (709)
T COG2274 635 EATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYA 702 (709)
T ss_pred CcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHH
Confidence 99999999999999999999999999999999999999999 99999999999999966544
No 3
>KOG0056|consensus
Probab=100.00 E-value=2.7e-103 Score=851.31 Aligned_cols=562 Identities=40% Similarity=0.640 Sum_probs=496.0
Q ss_pred HHHHHhhccCchhhHHHHHHHHHHHH---HHhhhhccccc--ccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 123 KAMLTHIWPKDEPQIRNRVKVAMGLL---YAVDELNTGIV--SDGALLELTNATDALIASATSIILGYGIARICSSGFNE 197 (816)
Q Consensus 123 ~~ll~~l~~~~~~~~~~~l~~~l~l~---~~id~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~i~~~i~~~~~~~l~~ 197 (816)
+...+|+||.+.+-++..+++|+.++ .+++...+.+. ..+.+...+..........+.+-+..+... ..++++.
T Consensus 199 ~~~~~ylwp~~~~alql~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gt-gsG~~~n 277 (790)
T KOG0056|consen 199 RTVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGT-GSGFLNN 277 (790)
T ss_pred EEeccccccCCCcchhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCc-cccchhh
Confidence 44678999998776666666665554 22222211110 001111000000111111112222222222 2377899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4347 198 LRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYK 277 (816)
Q Consensus 198 lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~ 277 (816)
+|.+++..+++...+++...+|+|++++++.||.++++|+++..++++++.+. +...+++++.|.+.++.+..+.+.+.
T Consensus 278 lRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~ 356 (790)
T KOG0056|consen 278 LRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIK 356 (790)
T ss_pred hheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999998887 88889999999999987766666677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q psy4347 278 CGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAAL 357 (816)
Q Consensus 278 ~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~ 357 (816)
++|++++++++++.+|..+++.+..|+.+++++++.+.++....-.|++-|.+|||.||+|++|.++|++...+|.+...
T Consensus 357 Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ 436 (790)
T KOG0056|consen 357 FNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEW 436 (790)
T ss_pred HhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999888888888999999999999999999999999999999999988
Q ss_pred HhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy4347 358 KTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFL 437 (816)
Q Consensus 358 k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L 437 (816)
|. ...+.+++..++.++++++++...+.+|+|..+.+|+|+++.|.+|+.|++.|++.+
T Consensus 437 ks---------------------~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~F 495 (790)
T KOG0056|consen 437 KS---------------------LASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFF 495 (790)
T ss_pred HH---------------------HHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHH
Confidence 87 566778888999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeC
Q psy4347 438 GSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVG 517 (816)
Q Consensus 438 ~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG 517 (816)
+..+..+|.+.+++|+++|++++++|+.+.++++|... ..|.|+|+||+|.|++ ++|+|+||||+++||+++|+||
T Consensus 496 GT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~--~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG 571 (790)
T KOG0056|consen 496 GTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKV--TQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVG 571 (790)
T ss_pred HHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccc--cCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEEC
Confidence 99999999999999999999999999988887766643 4789999999999976 7899999999999999999999
Q ss_pred CCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHc
Q psy4347 518 GSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLA 597 (816)
Q Consensus 518 ~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a 597 (816)
|||+||||++++|.||||.++|.|.|||+||+++...++|++||+||||..||++||.+||.|++|++++||+.+||+.|
T Consensus 572 ~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA 651 (790)
T KOG0056|consen 572 PSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAA 651 (790)
T ss_pred CCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEec
Q psy4347 598 DLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677 (816)
Q Consensus 598 ~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaH 677 (816)
++||-|..+|+||+|.|||||.+||||||||+||||+++|+|.|++|||||||||..||+.|+.+|.++..+||.|+|||
T Consensus 652 ~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAH 731 (790)
T KOG0056|consen 652 QIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAH 731 (790)
T ss_pred hHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhchh
Q psy4347 678 RLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMSL 711 (816)
Q Consensus 678 rls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~~ 711 (816)
|+||+-+|| |+|+|.|+|+||++++++.|.+|++
T Consensus 732 RLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq 772 (790)
T KOG0056|consen 732 RLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQ 772 (790)
T ss_pred eehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHH
Confidence 999999999 9999999999999998889988885
No 4
>KOG0055|consensus
Probab=100.00 E-value=7.5e-99 Score=901.17 Aligned_cols=501 Identities=34% Similarity=0.469 Sum_probs=450.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-CChhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy4347 186 GIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLN-RQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 264 (816)
Q Consensus 186 ~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~-~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v 264 (816)
.++.+...+..+++.+++...++++..++|...|+++++++.+|||+ +++|.+.+|+..|...++...+.-+..++..+
T Consensus 714 ~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~ 793 (1228)
T KOG0055|consen 714 LGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNI 793 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 33445567788899999999999999999999999999999999986 44599999999999999998888887777766
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHH
Q psy4347 265 FELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADR 344 (816)
Q Consensus 265 ~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r 344 (816)
..+ ++.+++.|+++|+|+++++++.|++++..+...+.......+..++..+.+....|++.||+||++|+.|++..+.
T Consensus 794 ~~~-~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~ 872 (1228)
T KOG0055|consen 794 AAV-IIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMEL 872 (1228)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Confidence 544 4456678899999999999999999998888888888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy4347 345 YEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVN 424 (816)
Q Consensus 345 ~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~ 424 (816)
|.+..++..+...+. ..+.++...+.+.+..+..++.+|+|++++.+|.+++.+++-.+
T Consensus 873 y~~~l~~p~~~~~~~---------------------~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf 931 (1228)
T KOG0055|consen 873 YKEELEKPRKSSFKR---------------------GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVF 931 (1228)
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHH
Confidence 999999988887776 33333333444556667788999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeee
Q psy4347 425 GLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLN 504 (816)
Q Consensus 425 ~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~is 504 (816)
..+..-...+.+......++.+|..++.+++++++.+|+++...... ...+...|+|+|+||+|+||.+++.+||+|+|
T Consensus 932 ~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~-~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~ 1010 (1228)
T KOG0055|consen 932 MALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSG-GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLS 1010 (1228)
T ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCC-CccccceeEEEEeeeEeeCCCCCCchhhcCCc
Confidence 77766667778888889999999999999999999999765432111 11223578999999999999999999999999
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCC
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKS 584 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~ 584 (816)
|+|++||++||||||||||||++.||.|||||++|.|.|||+||+++++++||++||+|.|||.||++||||||+||.+.
T Consensus 1011 l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1011 LSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999666
Q ss_pred CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4347 585 KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK 664 (816)
Q Consensus 585 ~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~ 664 (816)
++++||++||+.|++|+||.+||+||||.|||+|.+||||||||||||||++|||+||||||||||||.++|+.||++|+
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd 1170 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALD 1170 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhc
Q psy4347 665 TASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSM 709 (816)
Q Consensus 665 ~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~ 709 (816)
+.+.|||+|+||||||||++|| |+|+|+|+|++|++.+|.|++-.
T Consensus 1171 ~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv 1222 (1228)
T KOG0055|consen 1171 RAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLV 1222 (1228)
T ss_pred HhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHh
Confidence 9999999999999999999999 99999999999999888776543
No 5
>KOG0057|consensus
Probab=100.00 E-value=9.6e-99 Score=833.91 Aligned_cols=563 Identities=53% Similarity=0.840 Sum_probs=506.5
Q ss_pred chHHHHHHHHHhhccCchhhHHHHHHHHHHHH-------HHhhhhcccccccchhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy4347 117 TSQEMIKAMLTHIWPKDEPQIRNRVKVAMGLL-------YAVDELNTGIVSDGALLELTNATDALIASATSIILGYGIAR 189 (816)
Q Consensus 117 ~~~~~~~~ll~~l~~~~~~~~~~~l~~~l~l~-------~~id~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~i~~ 189 (816)
+.+..++.+..|.||.-++.++.+++.++.++ ..+|.+.... .+.+-..+..+ +.+.+...++++|+++.
T Consensus 8 ~~~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~--id~l~~~~~~~-a~~~~~~~~~~~y~iar 84 (591)
T KOG0057|consen 8 SKLKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLI--IDGLNDADGNP-AVLSTITALLAGYGIAR 84 (591)
T ss_pred chhHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHH--HhhhhhcccCc-chhhhhhHHHHHHHHHH
Confidence 33467788999999998887776666555544 1222222211 01111122223 55667778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 190 ICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELAL 269 (816)
Q Consensus 190 ~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~ 269 (816)
+...+|+.++..++.++.+++.++...++|+|+++++++||.++.+|++.+.+++.+.++.+++...+.+++|.++.+.+
T Consensus 85 ~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~ 164 (591)
T KOG0057|consen 85 LGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIAL 164 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHH
Q psy4347 270 ISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVL 349 (816)
Q Consensus 270 ~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~ 349 (816)
++.++.+.+++.++++++..+..|.++++.+..|+.+++++++++.+++++.+.|+|.|.++||+||.|++|.++|....
T Consensus 165 v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l 244 (591)
T KOG0057|consen 165 VSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSL 244 (591)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHH
Confidence 77777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy4347 350 KKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQ 429 (816)
Q Consensus 350 ~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~ 429 (816)
.++.+...+. ...+++++++|.+++++....+++.|..-+.+|.||+|+++...++.++
T Consensus 245 ~~~~~~~~~~---------------------~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~q 303 (591)
T KOG0057|consen 245 KTYERAGLKY---------------------SSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQ 303 (591)
T ss_pred HHHHHhhhhH---------------------HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHH
Confidence 9999988887 6778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeC
Q psy4347 430 LSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPA 509 (816)
Q Consensus 430 l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~ 509 (816)
+..|+..|+..+.++.++...+..++.+.+...++.+. + .++...++.|+|+||+|.|++ ++++|+++||+|++
T Consensus 304 L~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~--~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~k 377 (591)
T KOG0057|consen 304 LSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--A--LPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPK 377 (591)
T ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--c--CCcccCCCcEEEEeeEEEeCC--CCceecceeEEecC
Confidence 99999999999999999999999888776554443322 1 122234678999999999986 67799999999999
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHH
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEE 589 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~ 589 (816)
||+|||||+|||||||++++|+||++ ++|+|+|||+|+++++++++|+.|||||||..||++||.+||.||+|++++||
T Consensus 378 GekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~ee 456 (591)
T KOG0057|consen 378 GEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEE 456 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q psy4347 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN 669 (816)
Q Consensus 590 i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~ 669 (816)
+.++||.+++||.|.++|+||+|.|||+|..|||||||||+||||++|||||+++|||||+||.+||+.+.+++.....+
T Consensus 457 V~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~ 536 (591)
T KOG0057|consen 457 VVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSG 536 (591)
T ss_pred HHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhchh
Q psy4347 670 KTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMSL 711 (816)
Q Consensus 670 ~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~~ 711 (816)
+|+|+|+||+++++++| |+|.|.|+|+||++ ..++|.+++.
T Consensus 537 rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~ 584 (591)
T KOG0057|consen 537 RTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWT 584 (591)
T ss_pred CeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhc
Confidence 99999999999999999 99999999999999 5566666654
No 6
>KOG0055|consensus
Probab=100.00 E-value=4.8e-97 Score=885.67 Aligned_cols=493 Identities=30% Similarity=0.435 Sum_probs=442.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 191 CSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALI 270 (816)
Q Consensus 191 ~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~ 270 (816)
...+..+++..++...+.+...++|.++++.+++++++|||.+.+|++.+++++|++.+++.++.-+..++..+.++ ++
T Consensus 83 ~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~f-i~ 161 (1228)
T KOG0055|consen 83 GVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATF-IA 161 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 33445677778889999999999999999999999999999999999999999999999999888877776655443 44
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHH
Q psy4347 271 SSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLK 350 (816)
Q Consensus 271 ~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~ 350 (816)
.+++.|+++|+|+++++.+.|+.++....+.+...+...+.+.+.+++++.+.|++.+++||.+||.|+.+.++|.+.++
T Consensus 162 g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~ 241 (1228)
T KOG0055|consen 162 GFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALE 241 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHH
Confidence 56678889999999999999999988888888888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy4347 351 KYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQL 430 (816)
Q Consensus 351 ~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l 430 (816)
...+..++. ..+.++......++.....++.+|+|+.++..+..+.|+++..+..+..-
T Consensus 242 ~~~k~gi~~---------------------g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g 300 (1228)
T KOG0055|consen 242 NALKFGIKK---------------------GLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIG 300 (1228)
T ss_pred HHHHHHHHH---------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhh
Confidence 988887776 23333333333455556778899999999999999999988766666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCC
Q psy4347 431 SMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAG 510 (816)
Q Consensus 431 ~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G 510 (816)
...+.+....+..+..+.+++.+|+++++..|.++... ..........|+|||+||+|+||.|++.++|+|+||+|++|
T Consensus 301 ~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G 379 (1228)
T KOG0055|consen 301 GMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS-KGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG 379 (1228)
T ss_pred hhhhhccccchHHHhccccchHHHHHHhcCCCCCCccc-ccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCC
Confidence 56677777888899999999999999999988865432 11112223578999999999999988889999999999999
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHH
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEET 590 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i 590 (816)
|+|||||||||||||+++||.|||+|++|+|+|||.|+++++.+++|++||+|+|+|.||++||+|||+||+|+++++++
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy4347 591 IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK 670 (816)
Q Consensus 591 ~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~ 670 (816)
.+|||+|++|+||.+||+||||.|||+|.+|||||||||||||||++||+||||||||||||+++|+.|+++|++.++|+
T Consensus 460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr 539 (1228)
T KOG0055|consen 460 EEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGR 539 (1228)
T ss_pred HHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhh
Q psy4347 671 TTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAM 706 (816)
Q Consensus 671 T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~ 706 (816)
|+|+||||||||++|| |+|+|.|+|+||++.+|.|.
T Consensus 540 TTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~ 582 (1228)
T KOG0055|consen 540 TTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYS 582 (1228)
T ss_pred eEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHH
Confidence 9999999999999999 99999999999999996444
No 7
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=8.3e-94 Score=861.20 Aligned_cols=580 Identities=24% Similarity=0.352 Sum_probs=476.8
Q ss_pred cHHhhhccccceEEEeecCccccccccccchHHHHHHHHHhhccCchhhHHHHHH-HHHHHH-HHhhhhcccccccchhh
Q psy4347 88 TTTQKRNCFHPGASTLTTTNEIETAKEEVTSQEMIKAMLTHIWPKDEPQIRNRVK-VAMGLL-YAVDELNTGIVSDGALL 165 (816)
Q Consensus 88 ~~~e~~~~ftGi~l~~~P~~~f~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~l~-~~l~l~-~~id~~~~~~~~~~~~l 165 (816)
-.+||.++|||++++++|+++|++.+++. ..+++++++++++++......++ ++..++ .+.+.+++.++ +.+.
T Consensus 113 ~~~ef~~~~~g~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~ii--D~v~ 187 (708)
T TIGR01193 113 SKEDFYEEWTGIAIFISPTPEYKPIKEKE---NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKII--DTYI 187 (708)
T ss_pred cHHHHHhhCCCEEEEEEeccccccccccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh
Confidence 33999999999999999999998643222 33566788888776432222111 111111 33344433221 1111
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhc
Q psy4347 166 ELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRG 245 (816)
Q Consensus 166 ~~~~~~~~~~~~~~~l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d 245 (816)
. ......+..++++++++.++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++++|++ +
T Consensus 188 ~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~ 261 (708)
T TIGR01193 188 P-----HKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-D 261 (708)
T ss_pred c-----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-h
Confidence 0 001112222333344455667788999999999999999999999999999999999999999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4347 246 SRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDS 325 (816)
Q Consensus 246 ~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~ 325 (816)
.+.+.+++......++..++.++ ++++++++++|++++++++++|+++++.+++.++.++..++..+..++.++.+.|+
T Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 340 (708)
T TIGR01193 262 ASSIIDALASTILSLFLDMWILV-IVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIED 340 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66676665544444433333222 23444667899999999999999988888888888887778888888999999999
Q ss_pred HchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 326 LINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIF 405 (816)
Q Consensus 326 l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~ 405 (816)
++|+++||+||.|+.+.++|++...++.+...+. .........+..++..+..++++++
T Consensus 341 l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~i~il~~ 399 (708)
T TIGR01193 341 LNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKY---------------------QKADQGQQAIKAVTKLILNVVILWT 399 (708)
T ss_pred HhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877766 2222233334445555667788899
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEE
Q psy4347 406 AAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFR 485 (816)
Q Consensus 406 G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~ 485 (816)
|++++.+|.+|+|++++|.++..++..|+..+...+..++++..+++|+.++++.++|..+.....+ .....+.|+|+
T Consensus 400 g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~--~~~~~~~I~~~ 477 (708)
T TIGR01193 400 GAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTE--LNNLNGDIVIN 477 (708)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccC--CCCCCCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999998776432211011 11235689999
Q ss_pred eeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcC
Q psy4347 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ 565 (816)
Q Consensus 486 ~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q 565 (816)
||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||
T Consensus 478 ~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 555 (708)
T TIGR01193 478 DVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQ 555 (708)
T ss_pred EEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEec
Confidence 99999975 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHhcC-CCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q psy4347 566 DPVLFHDTILYNINYG-DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644 (816)
Q Consensus 566 ~~~LF~~Ti~eNi~~~-~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiL 644 (816)
||+||++||+|||+++ +|++++++++++|+.++++|||.+||+||||.|||+|.+|||||||||+||||++++|+||||
T Consensus 556 ~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliL 635 (708)
T TIGR01193 556 EPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLIL 635 (708)
T ss_pred CceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999999999999 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 645 DEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 645 DE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
|||||+||+++|+.|++.|++. +++|+|+||||+++++.|| |+|++.|+|+||++.++.|
T Consensus 636 DE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y 702 (708)
T TIGR01193 636 DESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFY 702 (708)
T ss_pred eCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcH
Confidence 9999999999999999999885 6899999999999999999 9999999999999987643
No 8
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.6e-93 Score=859.18 Aligned_cols=580 Identities=23% Similarity=0.305 Sum_probs=479.4
Q ss_pred HhhhccccceEEEeecCccccccccccchHHHHHHHHHhhccCchhhHHHHHHHH-HHHH-HHhhhhcccccccchhhhh
Q psy4347 90 TQKRNCFHPGASTLTTTNEIETAKEEVTSQEMIKAMLTHIWPKDEPQIRNRVKVA-MGLL-YAVDELNTGIVSDGALLEL 167 (816)
Q Consensus 90 ~e~~~~ftGi~l~~~P~~~f~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~l~~~-l~l~-~~id~~~~~~~~~~~~l~~ 167 (816)
+||.++|+|++++++|+++|++.+++. ..++.++++++++++......++.+ ..++ .++|.+++.++ +.+..
T Consensus 113 ~e~~~~~~g~~l~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~ii--d~v~~- 186 (710)
T TIGR03796 113 EEFDESFTGVVLTFEPGPEFQKGGRKP---SLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFV--DEILV- 186 (710)
T ss_pred HHHHhhCCCeEEEEEECccccccCcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhh-
Confidence 899999999999999999998643322 3455677888877643222211111 1111 34444443221 11110
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHH
Q psy4347 168 TNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSR 247 (816)
Q Consensus 168 ~~~~~~~~~~~~~l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~ 247 (816)
......+..++++++++.++..++.+++.++..+++.++..+++.++|+|++++|++||+++++|++++|++++ .
T Consensus 187 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~ 261 (710)
T TIGR03796 187 ----QGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-D 261 (710)
T ss_pred ----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-H
Confidence 11112233344445555566788899999999999999999999999999999999999999999999999887 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHc
Q psy4347 248 GINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLI 327 (816)
Q Consensus 248 ~i~~~~~~~~~~ii~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~ 327 (816)
.+.+++...+..++..++.+++ ++++++.++|++++++++++|+++++.+++.++..+..++..+..++.++.+.|.++
T Consensus 262 ~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 340 (710)
T TIGR03796 262 QVAEFLSGQLATTALDAVMLVF-YALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQ 340 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5776655444444444333322 344567799999999999999988888887777777777777778889999999999
Q ss_pred hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 328 NYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAA 407 (816)
Q Consensus 328 gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~ 407 (816)
|+++||++|.|+.+.++|.+...++.+...+. .........+..++..+..++++++|+
T Consensus 341 ~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 341 SIETLKASGLESDFFSRWAGYQAKLLNAQQEL---------------------GVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred hHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888877665 333344445556667777888999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccc---C-CccccCCCCccEE
Q psy4347 408 REIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKAN---A-LPLVLTTSNASIE 483 (816)
Q Consensus 408 ~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~---~-~~~~~~~~~g~I~ 483 (816)
+++.+|.+|+|+++++.++...+..|+..+...+..++++..+++|+.++++.+++...... . .........+.|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999988766432210 0 0000012246899
Q ss_pred EEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEE
Q psy4347 484 FRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563 (816)
Q Consensus 484 ~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V 563 (816)
|+||+|+|++ .++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||
T Consensus 480 ~~~vsf~y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 558 (710)
T TIGR03796 480 LRNITFGYSP-LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMV 558 (710)
T ss_pred EEEEEEecCC-CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEE
Confidence 9999999985 346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q psy4347 564 PQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILV 643 (816)
Q Consensus 564 ~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLi 643 (816)
|||++||++||+|||++++|+++++++++||+.++++++|.++|+||||.|||+|.+|||||||||+|||||+++|+|||
T Consensus 559 ~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ili 638 (710)
T TIGR03796 559 DQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILI 638 (710)
T ss_pred ecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 644 FDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 644 LDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
||||||+||+++|+.|.+.|++ .++|+|+||||+++++.|| |+|++.|+|+||++.++.|
T Consensus 639 LDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y 705 (710)
T TIGR03796 639 LDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAY 705 (710)
T ss_pred EECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcH
Confidence 9999999999999999999987 4899999999999999999 9999999999999987654
No 9
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.3e-93 Score=854.25 Aligned_cols=581 Identities=22% Similarity=0.306 Sum_probs=477.8
Q ss_pred cHHhhhccccceEEEeecCccccccccccchHHHHHHHHHhhccCchhhHHHHHH-HHHHHH-HHhhhhcccccccchhh
Q psy4347 88 TTTQKRNCFHPGASTLTTTNEIETAKEEVTSQEMIKAMLTHIWPKDEPQIRNRVK-VAMGLL-YAVDELNTGIVSDGALL 165 (816)
Q Consensus 88 ~~~e~~~~ftGi~l~~~P~~~f~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~l~-~~l~l~-~~id~~~~~~~~~~~~l 165 (816)
=.+||.++|+|++++++|+++|++.+++.+....++.++++++++++......++ ++..++ .++|.+++.++ +.+.
T Consensus 101 ~~~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~ii--D~~~ 178 (694)
T TIGR03375 101 SLDALEALYSGYAIFVRPQFRFDARADELISPRPKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVY--DRVV 178 (694)
T ss_pred cHHHHHhhcCCeEEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh
Confidence 3389999999999999999999754322111233456777787776432221111 111111 33444443221 1111
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhc
Q psy4347 166 ELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRG 245 (816)
Q Consensus 166 ~~~~~~~~~~~~~~~l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d 245 (816)
. ......++.++++++++.++..++.++++++..+.+.++..++|.++|+|++++|++| +++++|++++|+ +|
T Consensus 179 ~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d 251 (694)
T TIGR03375 179 P-----NQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-RE 251 (694)
T ss_pred h-----cCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HH
Confidence 0 0011122233334444455677889999999999999999999999999999999998 789999999998 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4347 246 SRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDS 325 (816)
Q Consensus 246 ~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~ 325 (816)
.+.++.++...+...+..++.+++ +++++++++|.+++++++++|+++++.+++.++.++..++..+..++.++.+.|+
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 330 (694)
T TIGR03375 252 FESVRDFFTSATLTALIDLPFALL-FLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVES 330 (694)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777877665444333333332222 2345677899999999999999988888888877777777788888999999999
Q ss_pred HchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 326 LINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIF 405 (816)
Q Consensus 326 l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~ 405 (816)
++|+++||+|+.|+.+.++|.+..+++.+...+. .........+..++..++.++++++
T Consensus 331 l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~il~~ 389 (694)
T TIGR03375 331 LSGLETIKALNAEGRFQRRWEQTVAALARSGLKS---------------------RFLSNLATNFAQFIQQLVSVAIVVV 389 (694)
T ss_pred HhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988877776 3334444455556666777888999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEE
Q psy4347 406 AAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFR 485 (816)
Q Consensus 406 G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~ 485 (816)
|++++.+|.+|+|++++|..+...+..|+..++..+..++.+..+++|+.++++.+++....... .......+.|+|+
T Consensus 390 g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~--~~~~~~~~~I~~~ 467 (694)
T TIGR03375 390 GVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRF--LHRPRLQGEIEFR 467 (694)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC--CCCCCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999987764322111 1111234679999
Q ss_pred eeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcC
Q psy4347 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ 565 (816)
Q Consensus 486 ~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q 565 (816)
||+|+|++ .++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||
T Consensus 468 ~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q 546 (694)
T TIGR03375 468 NVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred EEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECC
Confidence 99999975 24689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q psy4347 566 DPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645 (816)
Q Consensus 566 ~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLD 645 (816)
|++||++||+|||++++|++++++++++++.++++|+|++||+||||.+||+|.+|||||||||+|||||+++|+|||||
T Consensus 547 ~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD 626 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred ChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcC
Q psy4347 646 EATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 646 E~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~ 702 (816)
||||+||+++|+.|++.|++..+++|+|+||||+++++.|| |+|+|.|+|+||++..
T Consensus 627 E~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~~ 690 (694)
T TIGR03375 627 EPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEAL 690 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHHh
Confidence 99999999999999999999888999999999999999999 9999999999998764
No 10
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.1e-92 Score=842.95 Aligned_cols=572 Identities=23% Similarity=0.293 Sum_probs=468.9
Q ss_pred ccHHhhhccccceEEEeecCccccccccccchHHHHHHHHHh-hccCchhhHHHHHH-HHHHHH-HHhhhhcccccccch
Q psy4347 87 LTTTQKRNCFHPGASTLTTTNEIETAKEEVTSQEMIKAMLTH-IWPKDEPQIRNRVK-VAMGLL-YAVDELNTGIVSDGA 163 (816)
Q Consensus 87 ~~~~e~~~~ftGi~l~~~P~~~f~~~~~~~~~~~~~~~ll~~-l~~~~~~~~~~~l~-~~l~l~-~~id~~~~~~~~~~~ 163 (816)
+-.+||+++ ||+++++.|+ |+. ++. .++.++++ ++++++..+...++ ++..++ .+.+.+++.++ +.
T Consensus 97 ~~~~e~~~~-~g~~~~~~~~--~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~ii--d~ 165 (686)
T TIGR03797 97 VDAAMAATL-APEAYMFYRP--LPD--KAL----GLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILI--GT 165 (686)
T ss_pred cCHHHHHhc-CCEEEEEecC--Ccc--ccc----cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 444899888 9999999998 752 111 23445555 45554322211111 111111 33344433221 11
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHH
Q psy4347 164 LLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIID 243 (816)
Q Consensus 164 ~l~~~~~~~~~~~~~~~l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~ 243 (816)
+.. ......+..++++++++.++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++++|++
T Consensus 166 v~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~ 240 (686)
T TIGR03797 166 AIP-----DADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM 240 (686)
T ss_pred hhh-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh
Confidence 110 111123334445555556667788999999999999999999999999999999999999999999999997
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy4347 244 RGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAI 323 (816)
Q Consensus 244 ~d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (816)
+.+.+++++...+...+..++.. +++++++++++|++++++++++|+++++..++.++..+..++..+..++.++.+.
T Consensus 241 -~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (686)
T TIGR03797 241 -GISQIRRILSGSTLTTLLSGIFA-LLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTV 318 (686)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667766554443333333222 2334556778999999999998888888777777777777777788889999999
Q ss_pred HHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy4347 324 DSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSM 403 (816)
Q Consensus 324 E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl 403 (816)
|.++|+++||+||.|+.+.++|++..+++.+...+. ............++..+..++++
T Consensus 319 e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~il 377 (686)
T TIGR03797 319 QLINGISKLRVAGAENRAFARWAKLFSRQRKLELSA---------------------QRIENLLTVFNAVLPVLTSAALF 377 (686)
T ss_pred HHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887776 33333444445556667778889
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEE
Q psy4347 404 IFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIE 483 (816)
Q Consensus 404 ~~G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~ 483 (816)
++|++++.+|.+|+|+++++.++..++..|+.+++..+..++++..+++|+.++++.++|..... ..+ ....+.|+
T Consensus 378 ~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~~~---~~~~~~I~ 453 (686)
T TIGR03797 378 AAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-TDP---GKLSGAIE 453 (686)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-CCC---CCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999998876643211 111 11246799
Q ss_pred EEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEE
Q psy4347 484 FRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563 (816)
Q Consensus 484 ~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V 563 (816)
|+||+|+|++ .++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++||||
T Consensus 454 ~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 532 (686)
T TIGR03797 454 VDRVTFRYRP-DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVV 532 (686)
T ss_pred EEEEEEEcCC-CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEE
Confidence 9999999975 257899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q psy4347 564 PQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILV 643 (816)
Q Consensus 564 ~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLi 643 (816)
|||++||+|||+|||++++| ++++++++||+.++++++|+++|+||||+|||+|.+|||||||||+|||||+++|+|||
T Consensus 533 ~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLi 611 (686)
T TIGR03797 533 LQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILL 611 (686)
T ss_pred ccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 644 FDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 644 LDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
||||||+||+++|+.|.+.|+++ ++|+|+||||+++++.+| |+|+|.|+|+||+++++.|
T Consensus 612 LDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y 678 (686)
T TIGR03797 612 FDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLF 678 (686)
T ss_pred EeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence 99999999999999999999987 689999999999999999 9999999999999987643
No 11
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-95 Score=782.90 Aligned_cols=487 Identities=51% Similarity=0.795 Sum_probs=465.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4347 199 RNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKC 278 (816)
Q Consensus 199 r~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~~ 278 (816)
|..++..+++...+.+.-+.|.|+++|++.||.++.+|.+...+++++..++.+....+.+++|.++.+.+++++++..+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 56678889999999999999999999999999999999999999999999999999999999999999988888888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q psy4347 279 GSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALK 358 (816)
Q Consensus 279 ~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k 358 (816)
+|++++++++++.+|.++++....|+...+++++++++++++...|+|-+.+|||.||.|+++..+|+..++.|.++..+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 359 TSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLG 438 (816)
Q Consensus 359 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~ 438 (816)
. ...+.++++++..+++.+...++..++..+..|++|+|+++....++.|++.|+..++
T Consensus 162 ~---------------------~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg 220 (497)
T COG5265 162 V---------------------HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLG 220 (497)
T ss_pred H---------------------HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhH
Confidence 8 6677888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCC
Q psy4347 439 SVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGG 518 (816)
Q Consensus 439 ~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~ 518 (816)
..+.+++++...+++++++++.+.++.+.++.+++.+ ...|.|.|+||+|.|.+ .+|+|+|+||++++|+++|||||
T Consensus 221 ~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~-~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~ 297 (497)
T COG5265 221 FSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWP-VRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGE 297 (497)
T ss_pred HHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccc-cccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeC
Confidence 9999999999999999999999999887776665542 24678999999999976 68999999999999999999999
Q ss_pred CCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcC
Q psy4347 519 SGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLAD 598 (816)
Q Consensus 519 sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~ 598 (816)
||+||||++++|.||||+++|.|.+||+|+++...+++|+.||+||||..||++|+..||.||+|+++++|+..|++.|+
T Consensus 298 SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aq 377 (497)
T COG5265 298 SGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQ 377 (497)
T ss_pred CCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Q psy4347 599 LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHR 678 (816)
Q Consensus 599 l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHr 678 (816)
+|+||.++|+||||.|||+|..||||||||+||||+++|+|+||+|||||||||..||++|+.+|++..+|+|+++||||
T Consensus 378 i~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahr 457 (497)
T COG5265 378 IHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHR 457 (497)
T ss_pred hhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcc-------CeEEEEcChhHHhhcCchhhhhch
Q psy4347 679 LSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMS 710 (816)
Q Consensus 679 ls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~ 710 (816)
||||.+|| |+|+|.|+|+||++.+| .|++++
T Consensus 458 lsti~~adeiivl~~g~i~erg~h~~ll~~~g-~ya~mw 495 (497)
T COG5265 458 LSTIIDADEIIVLDNGRIVERGTHEELLAAGG-LYAEMW 495 (497)
T ss_pred hhhccCCceEEEeeCCEEEecCcHHHHHHcCC-hHHHHh
Confidence 99999999 99999999999999955 565554
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-91 Score=825.78 Aligned_cols=492 Identities=22% Similarity=0.308 Sum_probs=421.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4347 186 GIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIF 265 (816)
Q Consensus 186 ~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~ 265 (816)
.++.++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++++|+++|.+.++.++...+..++..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~ 149 (588)
T PRK11174 70 ILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVL 149 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788899999999999999999999999999999999999999999999999999999887766666655555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHH
Q psy4347 266 ELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRY 345 (816)
Q Consensus 266 ~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~ 345 (816)
..++ +++++++++|.+++++++++|+.+++...+.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|
T Consensus 150 ~~~~-~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~ 228 (588)
T PRK11174 150 VPLL-ILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESI 228 (588)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHH
Confidence 3332 345567799999999999999888777777777777777777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-----
Q psy4347 346 EGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDL----- 420 (816)
Q Consensus 346 ~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~l----- 420 (816)
++..+++.+...+. .+.......+..++..+..+++++++++.+ .|.+|+|++
T Consensus 229 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~ 286 (588)
T PRK11174 229 RSASEDFRQRTMEV---------------------LRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVT 286 (588)
T ss_pred HHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccch
Confidence 99999988877665 222223333333444444444445555544 388888865
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcc
Q psy4347 421 ----VMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHT 496 (816)
Q Consensus 421 ----vaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~ 496 (816)
++++.+...++.|+..++..+..++++.++++|+.++++.+++..... ..+.+ ....+.|+|+||+|.|++ +
T Consensus 287 ~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~-~~~~~~i~~~~vsf~~~~--~ 362 (588)
T PRK11174 287 LFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQG-EKELA-SNDPVTIEAEDLEILSPD--G 362 (588)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC-ccccC-CCCCceEEEEeeEEeccC--C
Confidence 233356678899999999999999999999999999998875432111 11111 012356999999998865 4
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILY 576 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~e 576 (816)
+++|+|+||+|+|||++|||||||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+||||||+||++||+|
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~e 441 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRD 441 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHH
Confidence 68999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q psy4347 577 NINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITE 656 (816)
Q Consensus 577 Ni~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te 656 (816)
||++|+|++++||+++||+.+++++||.+||+||||.|||+|.+|||||||||+|||||++||+|||||||||+||+++|
T Consensus 442 NI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te 521 (588)
T PRK11174 442 NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSE 521 (588)
T ss_pred HhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 657 NNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 657 ~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
+.|+++|+++.+++|+|+||||+++++.|| |+|+|.|+|+||++.++.|
T Consensus 522 ~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y 577 (588)
T PRK11174 522 QLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLF 577 (588)
T ss_pred HHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHH
Confidence 999999999988999999999999999999 9999999999999987743
No 13
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6.5e-91 Score=816.59 Aligned_cols=491 Identities=33% Similarity=0.496 Sum_probs=437.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 191 CSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALI 270 (816)
Q Consensus 191 ~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~ 270 (816)
+..++.+...++..+++.+...++|.++|+|++++|++||++.++|++++|+++|.+.++..+......+...++.+ +.
T Consensus 64 ~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~-~~ 142 (567)
T COG1132 64 LGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL-IG 142 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH-HH
Confidence 45566677777888888999999999999999999999999999999999999999999888776533333233322 23
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHH
Q psy4347 271 SSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLK 350 (816)
Q Consensus 271 ~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~ 350 (816)
.+++++..+|.+++++++..|++.++..++.++.++..++.++..++.++.+.|.++|+++||+|+.++.+.++|.+..+
T Consensus 143 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~ 222 (567)
T COG1132 143 SLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANE 222 (567)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHH
Confidence 34556778999999999998888887777776567777778888899999999999999999999999999999999998
Q ss_pred HHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy4347 351 KYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQL 430 (816)
Q Consensus 351 ~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l 430 (816)
+..+...+. ....+...+...++..+...+++++|++.+..|.+++|++++|+.+..++
T Consensus 223 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 281 (567)
T COG1132 223 ELRRANLRA---------------------SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRL 281 (567)
T ss_pred HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHH
Confidence 888876665 33344444666777888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCC
Q psy4347 431 SMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAG 510 (816)
Q Consensus 431 ~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G 510 (816)
..|+..++..+..++++..+++|++++++.++++.+.... .....++|+|+||+|+|++ ++++|+|+||+|+||
T Consensus 282 ~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~----~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~G 355 (567)
T COG1132 282 LTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP----LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPG 355 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC----CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCC
Confidence 9999999999999999999999999999998765443221 1123577999999999975 578999999999999
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHH
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEET 590 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i 590 (816)
|++|||||||||||||+++|+|||+|++|+|++||+||++++.+++|++|++||||++||++||+|||+||+|++++||+
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei 435 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI 435 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy4347 591 IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK 670 (816)
Q Consensus 591 ~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~ 670 (816)
++||+.|++||||+++|+||||.|||+|.+|||||||||+||||+++||||||||||||+||++||+.|+++++++.++|
T Consensus 436 ~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~r 515 (567)
T COG1132 436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGR 515 (567)
T ss_pred HHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhch
Q psy4347 671 TTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMS 710 (816)
Q Consensus 671 T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~ 710 (816)
|+|+||||++++++|| |+|+|.|+|+||++.++ .|.+++
T Consensus 516 T~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g-~y~~l~ 561 (567)
T COG1132 516 TTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGG-LYARLY 561 (567)
T ss_pred EEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCC-HHHHHH
Confidence 9999999999999999 99999999999999966 444443
No 14
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.7e-90 Score=825.04 Aligned_cols=583 Identities=25% Similarity=0.355 Sum_probs=478.0
Q ss_pred ccHHhhhccccceEEEeecCccccccccccchHHHHHHHHHhhccCchhhHHHHHH-HHHHHH-HHhhhhcccccccchh
Q psy4347 87 LTTTQKRNCFHPGASTLTTTNEIETAKEEVTSQEMIKAMLTHIWPKDEPQIRNRVK-VAMGLL-YAVDELNTGIVSDGAL 164 (816)
Q Consensus 87 ~~~~e~~~~ftGi~l~~~P~~~f~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~l~-~~l~l~-~~id~~~~~~~~~~~~ 164 (816)
+-.+||.++|||+++++.|++ |++ ++.. ..++.++++++++++......++ ++..++ .+++.+++.++ +.+
T Consensus 97 i~~~e~~~~~~g~~l~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~ii--d~v 169 (694)
T TIGR01846 97 LSREVLEALWSGTVILLATRS-VAG--KALK--FGFSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVI--DKV 169 (694)
T ss_pred eCHHHHHhhCCCeEEEEecCc-ccc--cccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh
Confidence 334899999999999999997 653 1111 23455777777766432222221 111111 33444433221 111
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHh
Q psy4347 165 LELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDR 244 (816)
Q Consensus 165 l~~~~~~~~~~~~~~~l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~ 244 (816)
+. ......+..++++++++.++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++++|+ +
T Consensus 170 ~~-----~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~ 243 (694)
T TIGR01846 170 LV-----HRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-R 243 (694)
T ss_pred hc-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-h
Confidence 10 01112223334444555566778899999999999999999999999999999999999999999999999 4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4347 245 GSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAID 324 (816)
Q Consensus 245 d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E 324 (816)
|.+.+++++...+..++..++..++ +++++++++|.+++++++++|+++++.+++.+..++..++..+..++.++.+.|
T Consensus 244 d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e 322 (694)
T TIGR01846 244 ELEQIRNFLTGSALTVVLDLLFVVV-FLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVE 322 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777655444333333332222 244567799999999999999988888777776666666666777889999999
Q ss_pred HHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 325 SLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMI 404 (816)
Q Consensus 325 ~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~ 404 (816)
+++|+++||+||.|+.+.++|++..+++.+...+. .+..........++..+..+++++
T Consensus 323 ~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~il~ 381 (694)
T TIGR01846 323 SVTGIETIKATATEPQFQNRWDRQLAAYVAASFRV---------------------TNLGNIAGQAIELIQKLTFAILLW 381 (694)
T ss_pred HHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999988887776 333344445555666777888899
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEE
Q psy4347 405 FAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEF 484 (816)
Q Consensus 405 ~G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~ 484 (816)
+|++++.+|.+|+|++++|..+...+..|+..++..+..++++..+++|+.++++.+++.... .... .+...+.|+|
T Consensus 382 ~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~--~~~~~~~i~~ 458 (694)
T TIGR01846 382 FGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAA--LPELRGAITF 458 (694)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCC--CCCCCCeEEE
Confidence 999999999999999999999999999999999999999999999999999999887664321 1111 1123567999
Q ss_pred EeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEc
Q psy4347 485 RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVP 564 (816)
Q Consensus 485 ~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~ 564 (816)
+||+|+|++ .++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++|+|||
T Consensus 459 ~~vsf~y~~-~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~ 537 (694)
T TIGR01846 459 ENIRFRYAP-DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVL 537 (694)
T ss_pred EEEEEEcCC-CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEc
Confidence 999999975 2467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q psy4347 565 QDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644 (816)
Q Consensus 565 Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiL 644 (816)
||+++|++||+|||++++|+.++++++++|+.++++++|.++|+||||.+||+|.+|||||||||+|||||+++|+||||
T Consensus 538 q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ilil 617 (694)
T TIGR01846 538 QENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617 (694)
T ss_pred cCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhc
Q psy4347 645 DEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSM 709 (816)
Q Consensus 645 DE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~ 709 (816)
|||||+||+++|+.+.+.|+++.+++|+|+||||+++++.|| |+|++.|+|++|++.++. |+.+
T Consensus 618 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~-y~~l 688 (694)
T TIGR01846 618 DEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGL-YARL 688 (694)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCCh-HHHH
Confidence 999999999999999999999888999999999999999999 999999999999998764 4333
No 15
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.2e-89 Score=819.81 Aligned_cols=492 Identities=29% Similarity=0.410 Sum_probs=432.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy4347 187 IARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFE 266 (816)
Q Consensus 187 i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~ 266 (816)
++.++..++.+++.+++...+.++..++|.++|++++++|++||++.++|++++|+++|++.++..+...+..++..++.
T Consensus 209 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~ 288 (711)
T TIGR00958 209 LLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVM 288 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667788899999999999999999999999999999999999999999999999998888777666666655554
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHH
Q psy4347 267 LALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYE 346 (816)
Q Consensus 267 ~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~ 346 (816)
+++ ++++++.++|.+++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.
T Consensus 289 ~i~-~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~ 367 (711)
T TIGR00958 289 LLG-LLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFK 367 (711)
T ss_pred HHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHH
Confidence 433 3445667899999999999999888888887777777777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4347 347 GVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGL 426 (816)
Q Consensus 347 ~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~ 426 (816)
+..++..+...+. ....+.......++..+..++++++|++++.+|.+|+|+++++..|
T Consensus 368 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~ 426 (711)
T TIGR00958 368 EALEETLQLNKRK---------------------ALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLY 426 (711)
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999988876665 2222222333344455566778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEE
Q psy4347 427 LFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFT 506 (816)
Q Consensus 427 ~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~ 506 (816)
..++..|+..++..+..++++.++++|++++++.+++..+.....+ .+..+.|+|+||+|+||+++++++|+|+||+
T Consensus 427 ~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~---~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~ 503 (711)
T TIGR00958 427 QEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAP---LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFT 503 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC---CCCCCeEEEEEEEEECCCCCCCccccCceEE
Confidence 9999999999999999999999999999999998776432211111 1235679999999999864456899999999
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKS 586 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~ 586 (816)
|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||++||+|||+||.++.+
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~ 583 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTP 583 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4347 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA 666 (816)
Q Consensus 587 ~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~ 666 (816)
++++.++++.+++++||.++|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.|++ . ..
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~ 661 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RS 661 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 3 34
Q ss_pred cCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 667 SRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 667 ~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
.+++|+|+||||+++++.+| |+|+|.|+|+||+++++.|
T Consensus 662 ~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y 707 (711)
T TIGR00958 662 RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCY 707 (711)
T ss_pred cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCch
Confidence 46899999999999999999 9999999999999987643
No 16
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.2e-88 Score=788.93 Aligned_cols=466 Identities=23% Similarity=0.293 Sum_probs=404.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 189 RICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELA 268 (816)
Q Consensus 189 ~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v 268 (816)
.++..++.+++.++..+++.++..++|.++|+|++++|++||++.++|++++|+++|.+.++..+...+..++..++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~ 142 (529)
T TIGR02868 63 GIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGS 142 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888999999999999999999999999999999999999999999999999988877665555555544332
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHH
Q psy4347 269 LISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQW-RTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEG 347 (816)
Q Consensus 269 ~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~ 347 (816)
++++++++++|.+++++++++|++.++...+.++ .++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++
T Consensus 143 -~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 143 -AAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 2344567789999999888877766555344333 34445556677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy4347 348 VLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLL 427 (816)
Q Consensus 348 ~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~ 427 (816)
..+++.+...+. .+..+...+...++..+..++++++|++++.+|.+|+|+++++..+.
T Consensus 222 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~ 280 (529)
T TIGR02868 222 ADRELLAAERRA---------------------ARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLP 280 (529)
T ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Confidence 999988877776 33334444555566667777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEe
Q psy4347 428 FQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTI 507 (816)
Q Consensus 428 ~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i 507 (816)
..+..|+..+...+..++++.++.+|+.++++.+++..+.....+....+..+.|+|+||+|+|++ ++++|+|+||+|
T Consensus 281 ~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i 358 (529)
T TIGR02868 281 LAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDL 358 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCC--CCceeecceEEE
Confidence 999999999999999999999999999999988765322111101001112457999999999976 457999999999
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCH
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSY 587 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~ 587 (816)
+|||++|||||||||||||+++|+|+|+|++|+|++||+|++++ .+++|++|+||||||+||++||+|||++|+|++++
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~ 437 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATD 437 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy4347 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667 (816)
Q Consensus 588 ~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~ 667 (816)
|++++||+.++++|||.+||+||||.|||+|.+|||||||||||||||++||+|||||||||+||+++|+.|++.|++..
T Consensus 438 e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~ 517 (529)
T TIGR02868 438 EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL 517 (529)
T ss_pred HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCh
Q psy4347 668 RNKTTICIAHRL 679 (816)
Q Consensus 668 ~~~T~i~IaHrl 679 (816)
+++|+|+||||+
T Consensus 518 ~~~TvIiItHrl 529 (529)
T TIGR02868 518 SGKTVVVITHHL 529 (529)
T ss_pred CCCEEEEEecCC
Confidence 899999999996
No 17
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3e-88 Score=857.04 Aligned_cols=491 Identities=26% Similarity=0.363 Sum_probs=411.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc--CChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 190 ICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLN--RQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFEL 267 (816)
Q Consensus 190 ~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~--~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~ 267 (816)
++..++.+++.++..++++++..++|.++|+|++++|++||++ +++|++++|+++|++.++..+...+..++..++.+
T Consensus 877 i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~ 956 (1466)
T PTZ00265 877 IAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLF 956 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999999999999999999999999999986 88999999999999999987776666666655544
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHhHHHHHHchH
Q psy4347 268 ALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQF-RVN-----------------MNKAENEAGNKAIDSLINY 329 (816)
Q Consensus 268 v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~l~E~l~gi 329 (816)
++ +++++++++|.++++++++++++ ...+.++.+.. ..+ .++..++.+..+.|++.|+
T Consensus 957 i~-~~~~~~~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi 1032 (1466)
T PTZ00265 957 LV-SMVMSFYFCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNM 1032 (1466)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcH
Confidence 33 34556788999987765443332 22222221111 111 1122456678899999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 330 ETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAARE 409 (816)
Q Consensus 330 ~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~l 409 (816)
++||+|+.|+++.++|++..+.+.+...+. ....++...+..++..++.++++|+|+++
T Consensus 1033 ~tVka~~~e~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 1091 (1466)
T PTZ00265 1033 NTVIIYGLEDYFCNLIEKAIDYSNKGQKRK---------------------TLVNSMLWGFSQSAQLFINSFAYWFGSFL 1091 (1466)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887766655 33333444444556666778899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccC-Ccc-ccCCCCccEEEEee
Q psy4347 410 IAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANA-LPL-VLTTSNASIEFRDV 487 (816)
Q Consensus 410 V~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~-~~~-~~~~~~g~I~~~~v 487 (816)
+..|.+|+|++++++.++.....++..+...+..++++.++++|++++++.+++++..... ... ......+.|+|+||
T Consensus 1092 v~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nV 1171 (1466)
T PTZ00265 1092 IRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDV 1171 (1466)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEE
Confidence 9999999999999887766566678889999999999999999999999987654221111 110 01123468999999
Q ss_pred EEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-------------------------------
Q psy4347 488 NFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP------------------------------- 536 (816)
Q Consensus 488 sf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p------------------------------- 536 (816)
+|+||++++.+||+|+||+|+||+++|||||||||||||++||+|||+|
T Consensus 1172 sF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 (1466)
T PTZ00265 1172 NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVG 1251 (1466)
T ss_pred EEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccc
Confidence 9999864456899999999999999999999999999999999999999
Q ss_pred -----------------------CcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHH
Q psy4347 537 -----------------------NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEA 593 (816)
Q Consensus 537 -----------------------~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a 593 (816)
++|+|+|||+|+++++.+++|++||||||||+||++||+|||+||+|+++++++++|
T Consensus 1252 ~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A 1331 (1466)
T PTZ00265 1252 MKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRA 1331 (1466)
T ss_pred cccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCE
Q psy4347 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKT 671 (816)
Q Consensus 594 ~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T 671 (816)
|+.|++||||.+||+||||.|||+|.+|||||||||||||||+++|+||||||||||||+++|+.|+++|+++. +++|
T Consensus 1332 ~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~T 1411 (1466)
T PTZ00265 1332 CKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKT 1411 (1466)
T ss_pred HHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984 6899
Q ss_pred EEEEecChhHHHhcc-----------CeE-EEEcChhHHhhc-Cchh
Q psy4347 672 TICIAHRLSTIKHLL-----------GYK-AHRKTSTNLVRG-NSSA 705 (816)
Q Consensus 672 ~i~IaHrls~i~~~d-----------g~i-~~~g~~~~L~~~-~~~~ 705 (816)
+|+||||++++++|| |++ +|.|+|+||++. ++.|
T Consensus 1412 vIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y 1458 (1466)
T PTZ00265 1412 IITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVY 1458 (1466)
T ss_pred EEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChH
Confidence 999999999999998 465 489999999984 5543
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.9e-87 Score=789.36 Aligned_cols=495 Identities=30% Similarity=0.424 Sum_probs=436.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 188 ARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFEL 267 (816)
Q Consensus 188 ~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~ 267 (816)
+.++..++.+++.++..+++.++..++|..+|+|++++|+++|+++++|++++|+++|.+.+.......+..++..++.+
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 153 (582)
T PRK11176 74 LMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 153 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667788888899999999999999999999999999999999999999999998888877665555555555544
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHH
Q psy4347 268 ALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEG 347 (816)
Q Consensus 268 v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~ 347 (816)
++. ++++++++|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++
T Consensus 154 ~~~-~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 232 (582)
T PRK11176 154 IGL-FIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHH
Confidence 333 3445678999999999988888777777777777777777778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy4347 348 VLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLL 427 (816)
Q Consensus 348 ~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~ 427 (816)
..+++.+...+. .+.......+..++..++.++++++|++.+.+|.+|+|+++++.++.
T Consensus 233 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~ 291 (582)
T PRK11176 233 VSNRMRQQGMKM---------------------VSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSM 291 (582)
T ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999998887776 33344445555666667777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEe
Q psy4347 428 FQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTI 507 (816)
Q Consensus 428 ~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i 507 (816)
.++..|+..++..+..++++..+++|+.++++.+++..... ... .+..+.|+|+||+|+|++ .++++|+|+||+|
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~~~--~~~~~~i~~~~vsf~y~~-~~~~il~~i~l~i 366 (582)
T PRK11176 292 IALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--RVI--ERAKGDIEFRNVTFTYPG-KEVPALRNINFKI 366 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--cCC--CCCCCeEEEEEEEEecCC-CCCccccCceEEe
Confidence 99999999999999999999999999999998765532211 111 122457999999999975 2478999999999
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCC-CC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKS-KS 586 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~-~~ 586 (816)
++||++||||+||||||||+++|+|+|+|++|+|++||+|+.+++.+++|++|+|||||+++|++||+|||++|+++ .+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~ 446 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYS 446 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999764 79
Q ss_pred HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4347 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA 666 (816)
Q Consensus 587 ~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~ 666 (816)
+++++++++.++++++|++||+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.+.+.|+++
T Consensus 447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~ 526 (582)
T PRK11176 447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhch
Q psy4347 667 SRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMS 710 (816)
Q Consensus 667 ~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~ 710 (816)
.+++|+|+||||+++++.|| |+|+|.|+|++|+++++. |++++
T Consensus 527 ~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~-y~~l~ 576 (582)
T PRK11176 527 QKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGV-YAQLH 576 (582)
T ss_pred hCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCh-HHHHH
Confidence 88899999999999999999 999999999999999864 44443
No 19
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.3e-87 Score=784.33 Aligned_cols=490 Identities=21% Similarity=0.285 Sum_probs=428.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 188 ARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFEL 267 (816)
Q Consensus 188 ~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~ 267 (816)
+.++..++.++..++..+.+.++..++|.++|+|++++|+.||+++++|++++|+++|.+.++.++...+..++..++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~ 148 (574)
T PRK11160 69 AAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVI 148 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888889999999999999999999999999999999999999999999999999988777666666555544
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHH
Q psy4347 268 ALISSILSYKCGSEFSLLAVSCVGIYTA-YTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYE 346 (816)
Q Consensus 268 v~~~~il~~~~~~~LaLi~l~~~~l~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~ 346 (816)
++ +++++++++|++++++++++|++.+ +.+++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|+
T Consensus 149 ~~-~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 227 (574)
T PRK11160 149 LV-LTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLE 227 (574)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHH
Confidence 33 3445678999999998887776654 345555665666677778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4347 347 GVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGL 426 (816)
Q Consensus 347 ~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~ 426 (816)
+..+++.+...+. .+..+...++..++..+..++++++|++++ +|.+|+|.++++..|
T Consensus 228 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~ 285 (574)
T PRK11160 228 QTEQQWLAAQRRQ---------------------ANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVF 285 (574)
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHH
Confidence 9999998887776 333344445555666677777888999884 899999999999888
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeE
Q psy4347 427 LFQ-LSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNF 505 (816)
Q Consensus 427 ~~~-l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl 505 (816)
... +..|+..+...+..++++.++++|+.++++.+++..+...... ....+.|+|+||+|+|++ .++++|+|+||
T Consensus 286 ~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~v~f~y~~-~~~~il~~i~~ 361 (574)
T PRK11160 286 AALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTA---AADQVSLTLNNVSFTYPD-QPQPVLKGLSL 361 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCC---CCCCCeEEEEEEEEECCC-CCCcceecceE
Confidence 655 4568888999999999999999999999998776432211111 112467999999999975 23579999999
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK 585 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~ 585 (816)
+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+|||||++||++||+|||++++|++
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 441 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNA 441 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4347 586 SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665 (816)
Q Consensus 586 ~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~ 665 (816)
+++++.++++.+++++||++ |+||||.|||+|.+|||||||||+||||++++|+|||||||||+||+++|+.|++.|++
T Consensus 442 ~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 442 SDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred CHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 666 ASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 666 ~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
..+++|+|+||||++++..|| |+|+|.|+|+||++.++.|
T Consensus 521 ~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y 567 (574)
T PRK11160 521 HAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRY 567 (574)
T ss_pred HcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHH
Confidence 888999999999999999999 9999999999999988743
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.6e-86 Score=778.51 Aligned_cols=495 Identities=23% Similarity=0.295 Sum_probs=421.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy4347 185 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 264 (816)
Q Consensus 185 ~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v 264 (816)
+++..++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++++|+++|.+.++.++...+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677889999999999999999999999999999999999999999999999999999887776666665555
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHH
Q psy4347 265 FELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADR 344 (816)
Q Consensus 265 ~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r 344 (816)
+.+ +++++++++++|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.+.|+++||+|+.|+.+.++
T Consensus 151 ~~~-~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 229 (592)
T PRK10790 151 ALI-GAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGER 229 (592)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHH
Confidence 433 2234455678999999988888887766666666656666666677788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy4347 345 YEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLAT-LNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMV 423 (816)
Q Consensus 345 ~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~-~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf 423 (816)
|.+..++..+...+. .+..+. ......++..+..+++++++++ +..|.+++|.++++
T Consensus 230 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~ 287 (592)
T PRK10790 230 MGEASRSHYMARMQT---------------------LRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAF 287 (592)
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHH
Confidence 999888877765554 111111 1122223333333333334444 68999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceee
Q psy4347 424 NGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNL 503 (816)
Q Consensus 424 ~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~i 503 (816)
..|...+..|+..++..+..++++..+++|+.++++.+++..... .. ....+.|+|+||+|+|++ ++++|+|+
T Consensus 288 ~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~---~~--~~~~~~i~~~~v~f~y~~--~~~il~~i 360 (592)
T PRK10790 288 ISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND---DR--PLQSGRIDIDNVSFAYRD--DNLVLQNI 360 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC---cc--CCCCCeEEEEEEEEEeCC--CCceeece
Confidence 999999999999999999999999999999999998765422111 11 112467999999999975 46799999
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCC
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK 583 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~ 583 (816)
||+|++||++||||+||||||||+++|+|+|+|++|+|++||.|+.+++.+++|++|+||||||+||++||+|||++++
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~- 439 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR- 439 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4347 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663 (816)
Q Consensus 584 ~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l 663 (816)
++++++++++|+.+|++++|.+||+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.|.+.|
T Consensus 440 ~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l 519 (592)
T PRK10790 440 DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519 (592)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhchh
Q psy4347 664 KTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMSL 711 (816)
Q Consensus 664 ~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~~ 711 (816)
+++.+++|+|+||||+++++.+| |+|++.|+|+||+++++. |+.+..
T Consensus 520 ~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~-y~~l~~ 573 (592)
T PRK10790 520 AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGR-YWQMYQ 573 (592)
T ss_pred HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCH-HHHHHH
Confidence 99888899999999999999999 999999999999998764 444443
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-84 Score=763.82 Aligned_cols=496 Identities=29% Similarity=0.437 Sum_probs=440.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy4347 185 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 264 (816)
Q Consensus 185 ~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v 264 (816)
++++.++..++.+++.++..+.+.++..++|..+|+|+++.|+++|++.++|++.+|++.|.+.+..++...+..++..+
T Consensus 60 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~ 139 (571)
T TIGR02203 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRET 139 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566778899999999999999999999999999999999999999999999999999888887766555555554
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHH
Q psy4347 265 FELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADR 344 (816)
Q Consensus 265 ~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r 344 (816)
+.+++ +++++++++|.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||.+|.|+.+.++
T Consensus 140 ~~~~~-~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 218 (571)
T TIGR02203 140 LTVIG-LFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRR 218 (571)
T ss_pred HHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence 44333 34456678999999999999998888888888877777788888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy4347 345 YEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVN 424 (816)
Q Consensus 345 ~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~ 424 (816)
|++..++..+...+. .+..+....+..++..+..++++++|++++.+|.+|+|.++++.
T Consensus 219 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~ 277 (571)
T TIGR02203 219 FDAVSNRNRRLAMKM---------------------TSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFI 277 (571)
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHH
Confidence 999999888877665 34444445555666667778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeee
Q psy4347 425 GLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLN 504 (816)
Q Consensus 425 ~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~is 504 (816)
.+..++..|+..+...+..++++..+.+|+.++++.+++...... +. .+..+.|+++||+|+|++. ++++|+|+|
T Consensus 278 ~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~--~~~~~~i~~~~v~f~y~~~-~~~il~~in 352 (571)
T TIGR02203 278 TAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR--AI--ERARGDVEFRNVTFRYPGR-DRPALDSIS 352 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--CC--CCCCCeEEEEEEEEEcCCC-CCccccCee
Confidence 999999999999999999999999999999999987765322111 11 1124579999999999762 468999999
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCC-
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK- 583 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~- 583 (816)
|+|++||+++|+|+||||||||+++|+|+|+|++|+|++||+|+.+++.+++|++|+||||+|++|+|||+|||+++++
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4347 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663 (816)
Q Consensus 584 ~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l 663 (816)
+.++++++++++.+++++++.+||+||||.|||+|.+|||||||||+||||++++|+|||||||||+||+++|+.|.+.|
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L 512 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhh
Q psy4347 664 KTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRS 708 (816)
Q Consensus 664 ~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~ 708 (816)
++..+++|+|+||||++.+..|| |++++.|+|++++++++ +|+.
T Consensus 513 ~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~-~~~~ 563 (571)
T TIGR02203 513 ERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG-LYAQ 563 (571)
T ss_pred HHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCC-HHHH
Confidence 99888999999999999999999 99999999999998765 4433
No 22
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-84 Score=727.17 Aligned_cols=500 Identities=24% Similarity=0.313 Sum_probs=444.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHH
Q psy4347 181 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNI 260 (816)
Q Consensus 181 l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~i 260 (816)
.++++.++.++.+++.+++..+..+.+.++..++|+.+++|+.++++.|-.+.++|+..+.+.+..+.++.+++.++..+
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~ 121 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQM 121 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677888999999999999999999999999999999999999999999999999999999988888777666
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHH
Q psy4347 261 VPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKF 340 (816)
Q Consensus 261 i~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~ 340 (816)
+.+++.-++ .++.+++++|.-++|.++++|++.++++.+....++..++.......+++.+.|.++|+.|+|+|+..+.
T Consensus 122 ~~~~ivp~~-i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~ 200 (559)
T COG4988 122 FLSAIVPLL-ILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEA 200 (559)
T ss_pred HHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHH
Confidence 655443222 2334567899999999999999999999988888887777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHH
Q psy4347 341 EADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAH-GNLTVGD 419 (816)
Q Consensus 341 ~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~-G~ltvG~ 419 (816)
..++..+..+++++.+|++ .+...+..++..++.+++.+++.++.+..... |++|...
T Consensus 201 ~~~~i~~~se~fR~~TM~v---------------------LriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~ 259 (559)
T COG4988 201 TEERIRKDSEDFRKATMSV---------------------LRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFA 259 (559)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHH
Confidence 9999999999999999998 33333344556777777777776666666777 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCccccc
Q psy4347 420 LVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRI 499 (816)
Q Consensus 420 lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~v 499 (816)
.+.++.+...++.|++.+++.|+.-+.+.++.+.++.+++.|++..+........ .....+|+++|++|+||+ ++++
T Consensus 260 ~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~-~~~~~ei~~~~l~~~y~~--g~~~ 336 (559)
T COG4988 260 GLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA-NEPPIEISLENLSFRYPD--GKPA 336 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc-cCCCceeeecceEEecCC--CCcc
Confidence 9999999999999999999999999999999999999999887654322110111 111234566699999987 4599
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHh
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNIN 579 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~ 579 (816)
++|+||++++|+.+||||+||||||||+++|+||++|++|+|.+||+|+++++.++||+++++|+|+|+||++||||||+
T Consensus 337 l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~ 416 (559)
T COG4988 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENIL 416 (559)
T ss_pred cCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q psy4347 580 YGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659 (816)
Q Consensus 580 ~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i 659 (816)
+++|++++|+++++++.+++.||+.+ |+|+||.+||+|.+|||||+||||+||||+++++++|||||||+||.+||+.|
T Consensus 417 l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i 495 (559)
T COG4988 417 LARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495 (559)
T ss_pred ccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhh
Q psy4347 660 LSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAM 706 (816)
Q Consensus 660 ~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~ 706 (816)
++.|.++.+++|+|+||||+..++++| |+++|.|+|++|.++++.|+
T Consensus 496 ~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~ 549 (559)
T COG4988 496 LQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYA 549 (559)
T ss_pred HHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHH
Confidence 999999999999999999999999999 99999999999999987543
No 23
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.9e-83 Score=756.55 Aligned_cols=486 Identities=30% Similarity=0.398 Sum_probs=419.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 194 GFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSI 273 (816)
Q Consensus 194 ~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~i 273 (816)
+..++..++..++..++..+++.++|+|++++|+.+|++.++|++++|+++|.+.+.......+..++..++.. ++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (588)
T PRK13657 71 IAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVAL-VVLLP 149 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34455555666666677777788999999999999999999999999999988877665554444444443332 22334
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHH
Q psy4347 274 LSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYE 353 (816)
Q Consensus 274 l~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~ 353 (816)
+++.++|.+++++++++|+++++...+.++.++..++..+..++.++.+.|.+.|+++||.|+.++.+.++|.+..+++.
T Consensus 150 ~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~ 229 (588)
T PRK13657 150 LALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLL 229 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHH
Confidence 45678999999999888888877777776666666667777788999999999999999999999999999999999988
Q ss_pred HHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy4347 354 QAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMP 433 (816)
Q Consensus 354 ~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l~~p 433 (816)
+...+. ............++..+..++++++|++++.+|.+|+|+++++..+...+..|
T Consensus 230 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~ 288 (588)
T PRK13657 230 AAQMPV---------------------LSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGR 288 (588)
T ss_pred HHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 876665 23333333444456666777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEE
Q psy4347 434 LGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSV 513 (816)
Q Consensus 434 l~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~v 513 (816)
+..+...+..++.+..+++|+.++++.+++.++.....+. ....+.|+++||+|+|++ ++++|+|+||+++|||++
T Consensus 289 l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~--~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v 364 (588)
T PRK13657 289 LDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL--GRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTV 364 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc--CCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEE
Confidence 9999999999999999999999999876543221111111 112357999999999975 467999999999999999
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHH
Q psy4347 514 AIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEA 593 (816)
Q Consensus 514 aivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a 593 (816)
||||+||||||||+|+|+|+|+|++|+|++||.|+.+++.+++|++|+||||||+||++||+|||++++|++++++++++
T Consensus 365 ~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~a 444 (588)
T PRK13657 365 AIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAA 444 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy4347 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTI 673 (816)
Q Consensus 594 ~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i 673 (816)
++.++++++|.++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.|.+.|++..+++|+|
T Consensus 445 l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvI 524 (588)
T PRK13657 445 AERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTF 524 (588)
T ss_pred HHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987899999
Q ss_pred EEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 674 CIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 674 ~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
+||||++.++.+| |++++.|+|++|++.++.|
T Consensus 525 iitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y 563 (588)
T PRK13657 525 IIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRF 563 (588)
T ss_pred EEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChH
Confidence 9999999999999 9999999999999887643
No 24
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5e-83 Score=752.03 Aligned_cols=488 Identities=28% Similarity=0.371 Sum_probs=424.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 192 SSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALIS 271 (816)
Q Consensus 192 ~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~ 271 (816)
..+..+++.++..+++.++..++|.++|+|++++|++||+++++|++++|+++|.+.+.......+..++..++.+++ .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~ 147 (585)
T TIGR01192 69 NTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFL-L 147 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344556666677777777777888899999999999999999999999999999988887766555555554443332 2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHH
Q psy4347 272 SILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKK 351 (816)
Q Consensus 272 ~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~ 351 (816)
+++++.++|.+++++++++|+++++...+.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..++
T Consensus 148 ~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~ 227 (585)
T TIGR01192 148 IPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNN 227 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHH
Confidence 34456789999999999999888887777777766666667777888999999999999999999999999999999988
Q ss_pred HHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy4347 352 YEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLS 431 (816)
Q Consensus 352 ~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l~ 431 (816)
+.+...+. .+..+.......++..+..++++++|++++.+|.+|+|+++++..|...+.
T Consensus 228 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~ 286 (585)
T TIGR01192 228 LLSAQYPV---------------------LDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLI 286 (585)
T ss_pred HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 87776665 233333334444556666778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCc
Q psy4347 432 MPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGK 511 (816)
Q Consensus 432 ~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge 511 (816)
.|+..++..+..++.+..+++|+.++++.+++..+....... ....+.|+|+||+|+|++ ++++|+|+||+|++||
T Consensus 287 ~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~ 362 (585)
T TIGR01192 287 GRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPEL--PNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQ 362 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCC--CCCCCeEEEEEEEEECCC--CCccccceeEEEcCCC
Confidence 999999999999999999999999999876553222111111 112457999999999975 4579999999999999
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHH
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETI 591 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~ 591 (816)
++|||||||||||||+++|+|+|+|++|+|++||.|+++++.+++|++++|||||+++|++||+|||+++.|++++++++
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 442 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVY 442 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCE
Q psy4347 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKT 671 (816)
Q Consensus 592 ~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T 671 (816)
++++.+++++++.++|+||||.+||+|.+|||||||||+|||||+++|++||||||||+||+++|+.+.+.|++..+++|
T Consensus 443 ~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~t 522 (585)
T TIGR01192 443 EAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRT 522 (585)
T ss_pred HHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 672 TICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 672 ~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
+|+||||++++..|| |++++.|+|++++++++.|
T Consensus 523 vI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 563 (585)
T TIGR01192 523 TFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRF 563 (585)
T ss_pred EEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChH
Confidence 999999999999998 9999999999999988744
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.4e-83 Score=750.55 Aligned_cols=490 Identities=24% Similarity=0.360 Sum_probs=427.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 190 ICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELAL 269 (816)
Q Consensus 190 ~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~ 269 (816)
++..++.+++.++..+.+.++..++|.++|+|++++|++||+++++|++++|+++|.+.+.......+..++..++..++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~ 126 (569)
T PRK10789 47 VVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCA 126 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888999999999999999999999999999999999999999999888876655444445444333222
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHH
Q psy4347 270 ISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVL 349 (816)
Q Consensus 270 ~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~ 349 (816)
..+++++.++|.+++++++++|+++++...+.++..+..++.++..++.++.+.|.+.|+++||+||.|+.+.++|.+..
T Consensus 127 ~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~ 206 (569)
T PRK10789 127 VLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADA 206 (569)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHH
Confidence 22333356899999999998888888777777776666667777778899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy4347 350 KKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQ 429 (816)
Q Consensus 350 ~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~ 429 (816)
+++.+..++. .+..+........+..++.++++++|++++.+|.+|+|+++++..|...
T Consensus 207 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~ 265 (569)
T PRK10789 207 EDTGKKNMRV---------------------ARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGL 265 (569)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 8888877665 2333333334444555666778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeC
Q psy4347 430 LSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPA 509 (816)
Q Consensus 430 l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~ 509 (816)
+..|+..++..+..++++.++.+|+.++++.+++..+... +. ....+.|+|+||+|+|++ .++++|+|+||+|+|
T Consensus 266 ~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~--~~~~~~I~~~~v~~~y~~-~~~~~l~~i~~~i~~ 340 (569)
T PRK10789 266 MIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PV--PEGRGELDVNIRQFTYPQ-TDHPALENVNFTLKP 340 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CC--CCCCCcEEEEEEEEECCC-CCCccccCeeEEECC
Confidence 9999999999999999999999999999988765322111 11 112457999999999975 246799999999999
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHH
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEE 589 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~ 589 (816)
||++|||||||||||||+++|+|+|+|++|+|++||+|+++++..++|++|+||||+|+||++||+|||++++++.++++
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~ 420 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQE 420 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q psy4347 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN 669 (816)
Q Consensus 590 i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~ 669 (816)
++++++.+++++++.++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.++
T Consensus 421 ~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~ 500 (569)
T PRK10789 421 IEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEG 500 (569)
T ss_pred HHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 670 KTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 670 ~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
+|+|+||||+++++.+| |+|++.|+|++|++.++.|
T Consensus 501 ~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 543 (569)
T PRK10789 501 RTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWY 543 (569)
T ss_pred CEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChH
Confidence 99999999999999998 9999999999999887643
No 26
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.2e-82 Score=740.81 Aligned_cols=477 Identities=23% Similarity=0.347 Sum_probs=411.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4347 186 GIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIF 265 (816)
Q Consensus 186 ~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~ 265 (816)
+++.++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++++|+++|.+.++.++...+..++..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~ 130 (529)
T TIGR02857 51 ALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVI 130 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445567788999999999999999999999999999999999999999999999999999988776655555544443
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHH
Q psy4347 266 ELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRY 345 (816)
Q Consensus 266 ~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~ 345 (816)
..++ .+++++.++|.+++++++++|+.+++...+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|
T Consensus 131 ~~~~-~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~ 209 (529)
T TIGR02857 131 IPLA-ILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAI 209 (529)
T ss_pred HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHH
Confidence 3322 344456789999999988888877776666666666666777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy4347 346 EGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNG 425 (816)
Q Consensus 346 ~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~ 425 (816)
++..+++.+...+. .+..........++..+..+++++++++.+..|.+|+|.++++..
T Consensus 210 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~ 268 (529)
T TIGR02857 210 ARSSEEYRERTMRV---------------------LRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLL 268 (529)
T ss_pred HHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99998888877665 233333334444555555556666777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeE
Q psy4347 426 LLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNF 505 (816)
Q Consensus 426 ~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl 505 (816)
+..++..|+..++..+..++++..+++|+.++++.+++..+.. +.. ....+.|+|+||+|+|++ .++++|+|+||
T Consensus 269 ~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~-~~~~~~i~~~~v~f~y~~-~~~~il~~i~l 343 (529)
T TIGR02857 269 LAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVT-AAPAPSLEFSGLSVAYPG-RRAPALRPVSF 343 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCC-CCCCCeEEEEEEEEECCC-CCcccccceeE
Confidence 9999999999999999999999999999999998654322111 111 111357999999999976 23589999999
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK 585 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~ 585 (816)
+|+|||++|||||||||||||+++|+|+|+|++|+|++||.|+++++.+++|++|+||||||++|++||+|||+++.++.
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 423 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDA 423 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4347 586 SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665 (816)
Q Consensus 586 ~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~ 665 (816)
+++++.++++.+++++||+++|+||||.+||+|.+||||||||++|||||+++|+|||||||||+||+++|+.|.+.|++
T Consensus 424 ~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 424 SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEecChhHHHhccCeEE
Q psy4347 666 ASRNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 666 ~~~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
+.+++|+|+||||+++++.|| +|+
T Consensus 504 ~~~~~t~i~itH~~~~~~~~d-~i~ 527 (529)
T TIGR02857 504 LAQGRTVLLVTHRLALAERAD-RIV 527 (529)
T ss_pred hcCCCEEEEEecCHHHHHhCC-EEE
Confidence 888999999999999998875 443
No 27
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.5e-82 Score=744.89 Aligned_cols=492 Identities=30% Similarity=0.437 Sum_probs=427.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 190 ICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELAL 269 (816)
Q Consensus 190 ~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~ 269 (816)
++..++.+++.++..+++.++..++|..+|+|++++|..+|++.++|++.+|+++|.+.+..+....+..++..++.+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~ 148 (576)
T TIGR02204 69 LVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIG 148 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678889999999999999999999999999999999999999999999998888887766555554444443322
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHH
Q psy4347 270 ISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVL 349 (816)
Q Consensus 270 ~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~ 349 (816)
.+++++.++|.+++++++.+|+++++..++.++.++..++..+..++..+.+.|.+.|+++||+|+.|+.+.++|++..
T Consensus 149 -~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~ 227 (576)
T TIGR02204 149 -GLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAV 227 (576)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHH
Confidence 2344567899999999888888877777777777777777777788889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy4347 350 KKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQ 429 (816)
Q Consensus 350 ~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~ 429 (816)
+++.+...+. ............++..+..++++++|++++.+|.+|+|+++++..+..+
T Consensus 228 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~ 286 (576)
T TIGR02204 228 EKAYEAARQR---------------------IRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVM 286 (576)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9888776655 2222233333344444556677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeC
Q psy4347 430 LSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPA 509 (816)
Q Consensus 430 l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~ 509 (816)
+..|+..+...+..++.+..+++|+.++++.+++........... .+..+.|+|+||+|+|+++.++++|+|+||+|+|
T Consensus 287 ~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~ 365 (576)
T TIGR02204 287 VAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLP-VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRP 365 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCC-cCCCceEEEEEEEEECCCCCCCccccceeEEecC
Confidence 999999999999999999999999999998765532211111111 1123579999999999753236899999999999
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHH
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEE 589 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~ 589 (816)
||++||+|+||||||||+++|+|+|+|++|+|++||.|+.+++..++|++|+||||||++|++||+|||++++|+.++++
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~ 445 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEE 445 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q psy4347 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN 669 (816)
Q Consensus 590 i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~ 669 (816)
++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|++||||||||+||+++|+.+.+.|+++.++
T Consensus 446 ~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~ 525 (576)
T TIGR02204 446 VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG 525 (576)
T ss_pred HHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCch
Q psy4347 670 KTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 670 ~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~ 704 (816)
+|+|+||||++.+..+| |++++.|+|+++++.++.
T Consensus 526 ~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~ 567 (576)
T TIGR02204 526 RTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGL 567 (576)
T ss_pred CEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCCh
Confidence 99999999999999999 999999999999987763
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.7e-80 Score=721.44 Aligned_cols=483 Identities=23% Similarity=0.286 Sum_probs=413.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHH-HHHHHHHH
Q psy4347 185 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSA-MVFNIVPT 263 (816)
Q Consensus 185 ~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~-~~~~ii~~ 263 (816)
++++.++..++.+++.++..+++.++..++|.++|+|++++|+.. .++..+++.+|.+.++..+.. ....++..
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 126 (544)
T TIGR01842 52 ALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDA 126 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334445566788899999999999999999999999999999842 345677788888888766544 33333333
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHH
Q psy4347 264 IFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEAD 343 (816)
Q Consensus 264 v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~ 343 (816)
++.++ .+++++.++|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.+
T Consensus 127 ~~~~~--~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~ 204 (544)
T TIGR01842 127 PWMPI--YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTK 204 (544)
T ss_pred HHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHH
Confidence 33222 2345677899999998888887776666666666666666777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy4347 344 RYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMV 423 (816)
Q Consensus 344 r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf 423 (816)
+|++..+++.+...+. ....+.......++..+..++++++|++++.+|.+|+|+++++
T Consensus 205 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~ 263 (544)
T TIGR01842 205 RWGRFHSKYLSAQSAA---------------------SDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAG 263 (544)
T ss_pred HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999888777665 2223333333444555566778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceee
Q psy4347 424 NGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNL 503 (816)
Q Consensus 424 ~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~i 503 (816)
..+..++..|+..+...+..++++..+.+|+.++++.+++..+.. +. ....+.|+++||+|+|++ .++++|+|+
T Consensus 264 ~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---~~--~~~~~~i~~~~v~~~y~~-~~~~~l~~~ 337 (544)
T TIGR01842 264 SILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM---PL--PEPEGHLSVENVTIVPPG-GKKPTLRGI 337 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC---CC--CCCCCeEEEEEEEEEcCC-CCccccccc
Confidence 999999999999999999999999999999999998766532211 11 112457999999999975 246899999
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCC
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK 583 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~ 583 (816)
||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+.+++.+++|+.|+||||+|++|++|++|||+++++
T Consensus 338 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~ 417 (544)
T TIGR01842 338 SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE 417 (544)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4347 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663 (816)
Q Consensus 584 ~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l 663 (816)
+.++++++++++.++++++++++|+||||.+||+|.+|||||||||+||||++++|++||||||||+||+++++.+.+.|
T Consensus 418 ~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l 497 (544)
T TIGR01842 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI 497 (544)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 664 KTAS-RNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 664 ~~~~-~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
+++. +++|+|+||||++++..|| |++++.|+|+++++.
T Consensus 498 ~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 498 KALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 9875 6899999999999999998 999999999999753
No 29
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.2e-80 Score=789.44 Aligned_cols=492 Identities=22% Similarity=0.276 Sum_probs=403.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 190 ICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELAL 269 (816)
Q Consensus 190 ~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~ 269 (816)
++..++.+++.++....+.+...++|.++|+|++++|++||++.++|++++|+++|++.++..+...+..++..++.++.
T Consensus 1016 i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~ 1095 (1522)
T TIGR00957 1016 ILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIG 1095 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888889999999999999999999999999999999999999999999998887776666666554443
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHH
Q psy4347 270 ISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVL 349 (816)
Q Consensus 270 ~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~ 349 (816)
. ++++++.+|.++++++.+++++.++..++.+..+..++......+...+.+.|++.|+++||+||.|+.+.+++.+..
T Consensus 1096 ~-li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~ 1174 (1522)
T TIGR00957 1096 A-LIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKV 1174 (1522)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHH
Confidence 3 333445667666555554444444444433333344444445567788999999999999999999999888888777
Q ss_pred HHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH
Q psy4347 350 KKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIA-HGNLTVGDLVMVNGLLF 428 (816)
Q Consensus 350 ~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~-~G~ltvG~lvaf~~~~~ 428 (816)
+...+..+.. .....++.+...++. .++++++|++.+. .|.+++|.+.+++.|..
T Consensus 1175 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~ 1230 (1522)
T TIGR00957 1175 DENQKAYYPS---------------------IVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSL 1230 (1522)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 7666554333 111112222222222 2233444455554 68899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-ccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEe
Q psy4347 429 QLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNK-ANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTI 507 (816)
Q Consensus 429 ~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~-~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i 507 (816)
++..|+..+...+..++.+.++.+|+.++++.++|.... ....+....+..|.|+|+||+|+|+++ .++||+||||+|
T Consensus 1231 ~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I 1309 (1522)
T TIGR00957 1231 QVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTI 1309 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEE
Confidence 999999999999999999999999999999887764311 111111111235789999999999762 357999999999
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCH
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSY 587 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~ 587 (816)
+|||++||||+||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||..+. ++++
T Consensus 1310 ~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sd 1388 (1522)
T TIGR00957 1310 HGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSD 1388 (1522)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998543 5899
Q ss_pred HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy4347 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667 (816)
Q Consensus 588 ~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~ 667 (816)
+|+++|++.++++|+|.++|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..
T Consensus 1389 eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~ 1468 (1522)
T TIGR00957 1389 EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF 1468 (1522)
T ss_pred HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhc
Q psy4347 668 RNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSM 709 (816)
Q Consensus 668 ~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~ 709 (816)
+++|+|+||||++++.++| |+|+|.|+|+||+++++ .|..+
T Consensus 1469 ~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~-~f~~l 1516 (1522)
T TIGR00957 1469 EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG-IFYSM 1516 (1522)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC-HHHHH
Confidence 9999999999999999999 99999999999999865 44333
No 30
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.3e-79 Score=778.54 Aligned_cols=474 Identities=26% Similarity=0.355 Sum_probs=410.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 188 ARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFEL 267 (816)
Q Consensus 188 ~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~ 267 (816)
+.++..++.+++.+++.++++++..++|.++|+|++++|++||++..+|++.++++.|.+.++..+...+..++..++.+
T Consensus 106 ~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~ 185 (1466)
T PTZ00265 106 IGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAF 185 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677889999999999999999999999999999999999999999999999999888887776666666665543
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHH
Q psy4347 268 ALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEG 347 (816)
Q Consensus 268 v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~ 347 (816)
+++++++++++|.|++++++++|+++++..++.++.++..++.++..++.++.+.|++.|+++||+|+.|+.+.++|++
T Consensus 186 -i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~ 264 (1466)
T PTZ00265 186 -LGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNL 264 (1466)
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHH
Confidence 3345567889999999999999999888888887777777677777788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCCHHH
Q psy4347 348 VLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHG--------NLTVGD 419 (816)
Q Consensus 348 ~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G--------~ltvG~ 419 (816)
..+.+.+..++. ....++......++..+..++++|+|++++..| .+++|+
T Consensus 265 ~~~~~~~~~~k~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~ 323 (1466)
T PTZ00265 265 SEKLYSKYILKA---------------------NFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGS 323 (1466)
T ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhH
Confidence 988888877766 333333344445555667788899999999986 589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCccccc
Q psy4347 420 LVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRI 499 (816)
Q Consensus 420 lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~v 499 (816)
++++..+....+.++..+...+..++.+.++++|++++++.++++.+....... . ..+.|+|+||+|+|+++++.++
T Consensus 324 v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~--~-~~~~I~~~nVsf~Y~~~~~~~v 400 (1466)
T PTZ00265 324 VISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKL--K-DIKKIQFKNVRFHYDTRKDVEI 400 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccC--C-CCCcEEEEEEEEEcCCCCCCce
Confidence 998877766666666777778899999999999999999988765332111111 1 1247999999999986434579
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEE-CCEeCCCCChHHHhhccEEEcCCCCcccccHHHHH
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI-DGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNI 578 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~i-dG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi 578 (816)
|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++ ||+|+++++..++|++||||+|+|.||++||+|||
T Consensus 401 L~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI 480 (1466)
T PTZ00265 401 YKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNI 480 (1466)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHH
Confidence 99999999999999999999999999999999999999999999 57999999999999999999999999999999999
Q ss_pred hcCCC---------------------------------------------------------CCCHHHHHHHHHHcCChh
Q psy4347 579 NYGDK---------------------------------------------------------SKSYEETIEAAKLADLHN 601 (816)
Q Consensus 579 ~~~~~---------------------------------------------------------~~~~~~i~~a~~~a~l~~ 601 (816)
++|.+ ++++++++++|+.+++++
T Consensus 481 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~ 560 (1466)
T PTZ00265 481 KYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHD 560 (1466)
T ss_pred HhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHH
Confidence 99742 346789999999999999
Q ss_pred HHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecCh
Q psy4347 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRL 679 (816)
Q Consensus 602 ~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrl 679 (816)
||.+||+||||.||++|.+|||||||||+|||||+++|+|||||||||+||+++|..|++.|+++. +++|+|+||||+
T Consensus 561 ~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrl 640 (1466)
T PTZ00265 561 FVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRL 640 (1466)
T ss_pred HHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999985 489999999999
Q ss_pred hHHHhcc
Q psy4347 680 STIKHLL 686 (816)
Q Consensus 680 s~i~~~d 686 (816)
++++.||
T Consensus 641 s~i~~aD 647 (1466)
T PTZ00265 641 STIRYAN 647 (1466)
T ss_pred HHHHhCC
Confidence 9999998
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.4e-79 Score=778.49 Aligned_cols=495 Identities=21% Similarity=0.256 Sum_probs=378.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy4347 185 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 264 (816)
Q Consensus 185 ~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v 264 (816)
|+++.++..++.+++.+++...+.+...++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..+
T Consensus 959 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~ 1038 (1622)
T PLN03130 959 YALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQI 1038 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455667788889999999999999999999999999999999999999999999999999988877666666666
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHH
Q psy4347 265 FELALISSILSYKCGSEFSLLAVSCVGIYTA-YTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEAD 343 (816)
Q Consensus 265 ~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~ 343 (816)
+.++..++ ++++++|. .+++++.+++.+. +..++.+..++..+......+...+.+.|+++|++|||+|+.++++.+
T Consensus 1039 ~~~i~~~i-~i~~~~~~-~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~ 1116 (1622)
T PLN03130 1039 FQLLSTFV-LIGIVSTI-SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAE 1116 (1622)
T ss_pred HHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHH
Confidence 65543323 23334553 2222222222111 111222222222222334446677899999999999999999876555
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------
Q psy4347 344 RYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGN--------- 414 (816)
Q Consensus 344 r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~--------- 414 (816)
++.+..+...+..... .....++.....++ +.+++++.+.+.+..+.
T Consensus 1117 ~~~~~~~~~~~~~~~~---------------------~~~~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~ 1172 (1622)
T PLN03130 1117 INGRSMDNNIRFTLVN---------------------MSSNRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFA 1172 (1622)
T ss_pred HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhh
Confidence 5544433322221111 00000111111111 12222333334444432
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-ccCCccccCCCCccEEEEeeEEEeCC
Q psy4347 415 LTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNK-ANALPLVLTTSNASIEFRDVNFSYID 493 (816)
Q Consensus 415 ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~-~~~~~~~~~~~~g~I~~~~vsf~Y~~ 493 (816)
.++|.+++ |...+..++..+...+..++.+.++++|+.++++.++|.... ++..+....+..|.|+|+||+|+|++
T Consensus 1173 ~~~G~~ls---~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~ 1249 (1622)
T PLN03130 1173 STMGLLLS---YALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRP 1249 (1622)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCC
Confidence 34454444 455666667777777788899999999999999987764321 11111111123578999999999965
Q ss_pred CcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCccccc
Q psy4347 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDT 573 (816)
Q Consensus 494 ~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~T 573 (816)
..++||+||||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||+||+||
T Consensus 1250 -~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GT 1328 (1622)
T PLN03130 1250 -ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGT 1328 (1622)
T ss_pred -CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcccccc
Confidence 2357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q psy4347 574 ILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653 (816)
Q Consensus 574 i~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~ 653 (816)
|||||.+++ +.+++++++||+.++++|||.++|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||+
T Consensus 1329 IreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~ 1407 (1622)
T PLN03130 1329 VRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407 (1622)
T ss_pred HHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 999999987 4799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhch
Q psy4347 654 ITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMS 710 (816)
Q Consensus 654 ~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~ 710 (816)
+||+.|+++|++..+++|+|+||||++|+.+|| |+|+|.|+|+||++++++.|..+.
T Consensus 1408 ~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~ 1471 (1622)
T PLN03130 1408 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMV 1471 (1622)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHH
Confidence 999999999999989999999999999999999 999999999999998545555554
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-78 Score=772.94 Aligned_cols=490 Identities=20% Similarity=0.263 Sum_probs=388.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 197 ELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSY 276 (816)
Q Consensus 197 ~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~ 276 (816)
.++.+.....+.+...++|.++|++++++|+.||+++++|++++|+++|.+.++..+...+..++..++.+++. +++++
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~-li~~~ 1094 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSS-ILVTS 1094 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34444444555666778999999999999999999999999999999999999988776666666555544332 33445
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q psy4347 277 KCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAA 356 (816)
Q Consensus 277 ~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~ 356 (816)
+.+|.+.++++.++.++..+...+.+..+..++......+...+.+.|++.|+++||+|+.|+.+.++|.+..+...+..
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 55664433322222222222333333333334444455667889999999999999999999999999999888877765
Q ss_pred HHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy4347 357 LKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAR--EIAHGNLTVGDLVMVNGLLFQLSMPL 434 (816)
Q Consensus 357 ~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~--lV~~G~ltvG~lvaf~~~~~~l~~pl 434 (816)
+.. .....++.....++..+..+++.+++.. ....+.+++|.+.++++|..++..|+
T Consensus 1175 ~~~---------------------~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l 1233 (1560)
T PTZ00243 1175 YLE---------------------NVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATL 1233 (1560)
T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 554 1111122222233333333333333333 33456689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcccccc--------------------------ccCCc--cccCCCCccEEEEe
Q psy4347 435 GFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNK--------------------------ANALP--LVLTTSNASIEFRD 486 (816)
Q Consensus 435 ~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~--------------------------~~~~~--~~~~~~~g~I~~~~ 486 (816)
..+...+..++.++.+++|+.++++..++.... +...+ .+..+..|.|+|+|
T Consensus 1234 ~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~n 1313 (1560)
T PTZ00243 1234 NWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEG 1313 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEE
Confidence 999999999999999999999999754321100 00000 00111247899999
Q ss_pred eEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCC
Q psy4347 487 VNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD 566 (816)
Q Consensus 487 vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~ 566 (816)
|+|+|++ ..++||+||||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++||||
T Consensus 1314 Vsf~Y~~-~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQd 1392 (1560)
T PTZ00243 1314 VQMRYRE-GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD 1392 (1560)
T ss_pred EEEEeCC-CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCC
Confidence 9999976 245699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC-CCEEEEe
Q psy4347 567 PVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN-TPILVFD 645 (816)
Q Consensus 567 ~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~-p~iLiLD 645 (816)
|+||+|||||||..++ +++++++++|++.++++|+|.++|+||||.|||+|.+|||||||||+|||||+++ |+|||||
T Consensus 1393 p~LF~gTIreNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLD 1471 (1560)
T PTZ00243 1393 PVLFDGTVRQNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD 1471 (1560)
T ss_pred CccccccHHHHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 9999999999998764 6899999999999999999999999999999999999999999999999999996 8999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhch
Q psy4347 646 EATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMS 710 (816)
Q Consensus 646 E~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~ 710 (816)
||||+||++||+.|++.|++..+++|+|+||||++++.++| |+|+|.|+|+||++++.+.|..+.
T Consensus 1472 EATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~ 1543 (1560)
T PTZ00243 1472 EATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543 (1560)
T ss_pred CCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999999999999888999999999999999999 999999999999986444555444
No 33
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-78 Score=773.63 Aligned_cols=498 Identities=20% Similarity=0.250 Sum_probs=383.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4347 186 GIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIF 265 (816)
Q Consensus 186 ~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~ 265 (816)
+++.++..++.+++.+++...+.+...++|.++|+|++++|++||+++++|++++|+++|.+.++..+...+..++..++
T Consensus 957 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~ 1036 (1495)
T PLN03232 957 ALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLW 1036 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677888889999999999999999999999999999999999999999999999999887766666665554
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHH
Q psy4347 266 ELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSI-TQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADR 344 (816)
Q Consensus 266 ~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r 344 (816)
.++...+ +++.+++.. +++++.+++.+.+...+ .+..+..++......+...+.+.|++.|+++||+|+.++++.++
T Consensus 1037 ~~i~~~i-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1037 QLLSTFA-LIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 4333222 223334322 22222222221111111 12222233333445567788999999999999999998876666
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC----C-HH
Q psy4347 345 YEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIA-HGNL----T-VG 418 (816)
Q Consensus 345 ~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~-~G~l----t-vG 418 (816)
+.+..+...+..... .....++.....+ ++.+++++.|.+.+. .|.+ + .+
T Consensus 1115 ~~~~~~~~~~~~~~~---------------------~~~~~wl~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 1170 (1495)
T PLN03232 1115 NGKSMDNNIRFTLAN---------------------TSSNRWLTIRLET---LGGVMIWLTATFAVLRNGNAENQAGFAS 1170 (1495)
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHccccccccccchH
Confidence 555444333322111 0000111111111 112222333334443 2432 1 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-ccCCccccCCCCccEEEEeeEEEeCCCccc
Q psy4347 419 DLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNK-ANALPLVLTTSNASIEFRDVNFSYIDKHTK 497 (816)
Q Consensus 419 ~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~-~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~ 497 (816)
.+..++.|...+..|+..+...+.+++.+.++.+|+.++++.++|.... .+..+....+..|.|+|+||+|+|++ ..+
T Consensus 1171 ~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~-~~~ 1249 (1495)
T PLN03232 1171 TMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRP-GLP 1249 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECC-CCC
Confidence 2334667888899999999999999999999999999999987764321 11111111123578999999999965 246
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHH
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYN 577 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eN 577 (816)
+||+||||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||+||+||||||
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q psy4347 578 INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITEN 657 (816)
Q Consensus 578 i~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~ 657 (816)
|.+++ +++++|+++|++.++++|||.++|+||||.|||+|.+|||||||||+|||||+++|+|||||||||+||++||+
T Consensus 1330 L~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~ 1408 (1495)
T PLN03232 1330 IDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408 (1495)
T ss_pred cCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 99986 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhchh
Q psy4347 658 NILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMSL 711 (816)
Q Consensus 658 ~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~~ 711 (816)
.|++.|++..+++|+|+||||++++.++| |+|+|.|+|+||++++++.|..+..
T Consensus 1409 ~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~ 1469 (1495)
T PLN03232 1409 LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVH 1469 (1495)
T ss_pred HHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHH
Confidence 99999999989999999999999999999 9999999999999987756655543
No 34
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-78 Score=667.57 Aligned_cols=488 Identities=23% Similarity=0.328 Sum_probs=409.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 190 ICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELAL 269 (816)
Q Consensus 190 ~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~ 269 (816)
+...+..|......+...-++..++|.++|+++..+++.-..+.++||+++|+..|++.++.++--. +.|.++.+++
T Consensus 69 I~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRv---i~P~~~a~~~ 145 (573)
T COG4987 69 ILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRV---IAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHH---HhhHHHHHHH
Confidence 4456667777888899999999999999999999999999999999999999999888888765443 3444333322
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHH
Q psy4347 270 I--SSILSYKCGSEFSLLAVSCVGIY-TAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYE 346 (816)
Q Consensus 270 ~--~~il~~~~~~~LaLi~l~~~~l~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~ 346 (816)
+ ..+.+-+++|.+++.+...+.+. +++.+.+.+..++..++..+..+.+.+.+.|.+.|....+.||+++.+.+.++
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 2 22233457899887665554443 34555566666667777777778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4347 347 GVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGL 426 (816)
Q Consensus 347 ~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~ 426 (816)
+.-..+.+...+. .+...+..+...++.++..+..+++.+..+-.|..+.-...++...
T Consensus 226 ~~e~~~~~~q~k~---------------------~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~ 284 (573)
T COG4987 226 ATEASWLKAQRKQ---------------------ARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLV 284 (573)
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHH
Confidence 9888888877776 4445555666666666666645555555667787775444444444
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeE
Q psy4347 427 LFQLSMPLGFLG-SVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNF 505 (816)
Q Consensus 427 ~~~l~~pl~~L~-~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl 505 (816)
++..+.++..+. ..+..+.+...++.|+.++++.+++...+ +.. .. .....++++||||+||+ ...++|+|+||
T Consensus 285 ~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~-~~--~~~~~l~~~~vsF~y~~-~~~~~L~~~~l 359 (573)
T COG4987 285 IFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-DEQ-TA--TTGQALELRNVSFTYPG-QQTKALKNFNL 359 (573)
T ss_pred HHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-ccc-cC--CccceeeeccceeecCC-Cccchhhccce
Confidence 455556665555 77788999999999999999999886543 111 11 11227999999999987 45689999999
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK 585 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~ 585 (816)
++++||+|||+|+|||||||++++|.|-|+|++|+|.++|.|+..++.+.+|+.|++++|.++||++|+|||+.+++|++
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A 439 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4347 586 SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665 (816)
Q Consensus 586 ~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~ 665 (816)
+|||++++++.+|+++++++.|+||+|.|||+|..||||||||+||||+|++|.|++||||||.+||++||++|++.|.+
T Consensus 440 sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhh
Q psy4347 666 ASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAM 706 (816)
Q Consensus 666 ~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~ 706 (816)
..+|+|+|+||||+..++.+| |+++|+|+|.+|++++|.++
T Consensus 520 ~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~ 567 (573)
T COG4987 520 HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYK 567 (573)
T ss_pred HhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHH
Confidence 889999999999999999999 99999999999999887544
No 35
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.7e-75 Score=678.88 Aligned_cols=462 Identities=18% Similarity=0.157 Sum_probs=376.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 191 CSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALI 270 (816)
Q Consensus 191 ~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~ 270 (816)
+..++.++..++..+++.++..++|.++|+|++++|+.||+++++|++++|+++|.+.++.++.. +..++..++.++ +
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~-~ 142 (555)
T TIGR01194 65 LALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFF-F 142 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHH-H
Confidence 34456778888899999999999999999999999999999999999999999999999887654 334444433332 2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchH--HHHHHHHHH
Q psy4347 271 SSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEK--FEADRYEGV 348 (816)
Q Consensus 271 ~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~--~~~~r~~~~ 348 (816)
+++++++++|.+++++++++|+.+++..++.++.++...+.++..++.++.+.|.+.|+++||+|+.++ .+.++|.+.
T Consensus 143 ~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~ 222 (555)
T TIGR01194 143 CIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQES 222 (555)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHH
Confidence 344567789999999888888877766666555555566666777889999999999999999999954 567888888
Q ss_pred HHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy4347 349 LKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLF 428 (816)
Q Consensus 349 ~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~ 428 (816)
.+++++...+. ............++..+...+++++|++. |.+|+|++++|..|..
T Consensus 223 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~ 278 (555)
T TIGR01194 223 ANNIADLHIIE---------------------ILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALL 278 (555)
T ss_pred HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHH
Confidence 88777765544 11111122222233333333344455443 7999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc---ccccccCCc---cccCCCCccEEEEeeEEEeCCCc--ccccc
Q psy4347 429 QLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPT---IKNKANALP---LVLTTSNASIEFRDVNFSYIDKH--TKRIF 500 (816)
Q Consensus 429 ~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e---~~~~~~~~~---~~~~~~~g~I~~~~vsf~Y~~~~--~~~vL 500 (816)
.+..|+..++..+..++++.++++|+.++++.+++ ..+.+.... .......+.|+|+||+|+|++.. .+++|
T Consensus 279 ~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l 358 (555)
T TIGR01194 279 YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFAL 358 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCcee
Confidence 99999999999999999999999999999864211 111010000 01011235799999999997521 23699
Q ss_pred eeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhc
Q psy4347 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINY 580 (816)
Q Consensus 501 ~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~ 580 (816)
+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||.|+++++.+++|+++++|+||++||++|+++|+
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-- 436 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE-- 436 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q psy4347 581 GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660 (816)
Q Consensus 581 ~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~ 660 (816)
.+++++++++++++.+++++++.++|+||||. .+|||||||||+||||++++|+|||||||||+||+++|+.+.
T Consensus 437 -~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~ 510 (555)
T TIGR01194 437 -GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFY 510 (555)
T ss_pred -ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 46678999999999999999999999999995 789999999999999999999999999999999999999999
Q ss_pred HHHH-Hh-cCCCEEEEEecChhHHHhcc
Q psy4347 661 SSLK-TA-SRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 661 ~~l~-~~-~~~~T~i~IaHrls~i~~~d 686 (816)
+.+. .+ .+++|+|+||||++++..||
T Consensus 511 ~~l~~~~~~~~~tiiiisH~~~~~~~~d 538 (555)
T TIGR01194 511 EELLPDLKRQGKTIIIISHDDQYFELAD 538 (555)
T ss_pred HHHHHHHHhCCCEEEEEeccHHHHHhCC
Confidence 8764 33 46899999999999999887
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=7e-74 Score=730.38 Aligned_cols=489 Identities=18% Similarity=0.248 Sum_probs=387.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 191 CSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALI 270 (816)
Q Consensus 191 ~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~ 270 (816)
+..++.+++.+++...+.+...+++.++|+++++.|+.||++.++|++++|+++|.+.++..+...+..++..++.+++.
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~ 1016 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA 1016 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888899999999999999999999999999999999999999999999999988776666666555544333
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHH
Q psy4347 271 SSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLK 350 (816)
Q Consensus 271 ~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~ 350 (816)
++++++++|.++++++.++++++++..++.+..+...+......+...+.+.|++.|+.+||+|+.++.+.++|.+..+
T Consensus 1017 -l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1017 -IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 3344556777655433333333333333333333333334455567889999999999999999999999999999887
Q ss_pred HHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy4347 351 KYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMT--LSMIFAAREIAHGNLTVGDLVMVNGLLF 428 (816)
Q Consensus 351 ~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~--~vl~~G~~lV~~G~ltvG~lvaf~~~~~ 428 (816)
...+..+.. .....++.....++..+..+ ++++++. ..++.|.+..+++|+.
T Consensus 1096 ~~~~~~~~~---------------------~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~ 1149 (1490)
T TIGR01271 1096 LHTANWFLY---------------------LSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAM 1149 (1490)
T ss_pred HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHH
Confidence 654433322 01111111111222111111 1122222 2345666666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccC---------------CccccCCCCccEEEEeeEEEeCC
Q psy4347 429 QLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANA---------------LPLVLTTSNASIEFRDVNFSYID 493 (816)
Q Consensus 429 ~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~---------------~~~~~~~~~g~I~~~~vsf~Y~~ 493 (816)
.+..++..+...+..+..+..+.+|+.++++.++|....... .+....+..|.|+|+||+|+|++
T Consensus 1150 ~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~ 1229 (1490)
T TIGR01271 1150 NILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE 1229 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC
Confidence 888999999999999999999999999999887664321100 00001123578999999999975
Q ss_pred CcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCccccc
Q psy4347 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDT 573 (816)
Q Consensus 494 ~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~T 573 (816)
+.+++|+||||+|+|||+|||||+||||||||+++|+|+|+ ++|+|+|||+|+.+++.+++|++|+||||||+||+||
T Consensus 1230 -~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GT 1307 (1490)
T TIGR01271 1230 -AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGT 1307 (1490)
T ss_pred -CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccC
Confidence 35789999999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q psy4347 574 ILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653 (816)
Q Consensus 574 i~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~ 653 (816)
|||||..+. ..+|+++++|++.++++++|.++|+||||+|||+|.+|||||||||+|||||+++|+|||||||||+||+
T Consensus 1308 IR~NLdp~~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~ 1386 (1490)
T TIGR01271 1308 FRKNLDPYE-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP 1386 (1490)
T ss_pred HHHHhCccc-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence 999998764 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhch
Q psy4347 654 ITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMS 710 (816)
Q Consensus 654 ~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~ 710 (816)
+|++.|++.|++..+++|+|+||||++++.++| |+|+|.|+|++|++.++ .|..+.
T Consensus 1387 ~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~-~f~~l~ 1449 (1490)
T TIGR01271 1387 VTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETS-LFKQAM 1449 (1490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCc-HHHHHH
Confidence 999999999999989999999999999999999 99999999999997644 444443
No 37
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.4e-73 Score=624.71 Aligned_cols=490 Identities=24% Similarity=0.312 Sum_probs=409.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHH
Q psy4347 178 ATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMV 257 (816)
Q Consensus 178 ~~~l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~ 257 (816)
++.+.+....+.++.+++.++|..++.+++.++..++...+|....+.+..- +..|+=.+-+ +|.+.++.|++.
T Consensus 62 Lv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~---~~~g~~~Q~L-rDL~qvR~Fltg-- 135 (580)
T COG4618 62 LVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLR---RGSGDGLQPL-RDLDQVRQFLTG-- 135 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhh---cCCCccccch-hhHHHHHHHHcC--
Confidence 3334444455567788999999999999999999999999999998777764 3344322222 455566666543
Q ss_pred HHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHh
Q psy4347 258 FNIVPTIFELALI--SSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYF 335 (816)
Q Consensus 258 ~~ii~~v~~~v~~--~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf 335 (816)
.-...+|+.-+. .+.++|.+++++++++++...+++.+.++-....++..++..+...+.+....-+.+|.++|++.
T Consensus 136 -~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AM 214 (580)
T COG4618 136 -TGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAM 214 (580)
T ss_pred -CCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 112222332221 23445678999999999888888777776555555555566666777888888999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy4347 336 NNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNL 415 (816)
Q Consensus 336 ~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~l 415 (816)
|......++|.+.+..+...+.+. .-....+..+...+-.+...+++.+|+|+++.|++
T Consensus 215 GM~~~l~~rW~~~~~~~L~~~~~a---------------------sd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~ 273 (580)
T COG4618 215 GMLGNLAKRWGRFNAAYLSAQERA---------------------SDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEI 273 (580)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcC
Confidence 999999999999999988876665 11112222223333445566788899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCc
Q psy4347 416 TVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKH 495 (816)
Q Consensus 416 tvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~ 495 (816)
|.|.+++-..+..+...|+......|.++..++.+++|+.++|.+.|+..+ ..+.+...+.+.+++|++.=|+ .
T Consensus 274 t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~-----~m~LP~P~g~L~Ve~l~~~PPg-~ 347 (580)
T COG4618 274 TPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE-----RMPLPAPQGALSVERLTAAPPG-Q 347 (580)
T ss_pred CcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-----CCCCCCCCceeeEeeeeecCCC-C
Confidence 999999999999999999999999999999999999999999998776432 1333344789999999997665 5
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHH
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~ 575 (816)
++|+|+|+||++++||.+|||||||||||||.|+|.|.+.|++|.|++||.|+++++.+.+-++|||.|||..||+|||+
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIa 427 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIA 427 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q psy4347 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655 (816)
Q Consensus 576 eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~t 655 (816)
|||+-+.++.+++.|.+|++.|+.||.|.+||+||||.|||+|..|||||||||++||||+.||.+++||||.|+||.+-
T Consensus 428 eNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~G 507 (580)
T COG4618 428 ENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG 507 (580)
T ss_pred HHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhH
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 656 ENNILSSLKTA-SRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 656 e~~i~~~l~~~-~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|+.+.++|.+. .+|+|+|+||||++.+..+| |++-..|.-+|++++
T Consensus 508 E~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 508 EAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999875 46899999999999999999 898888988888765
No 38
>KOG0054|consensus
Probab=100.00 E-value=1.6e-71 Score=680.16 Aligned_cols=497 Identities=23% Similarity=0.334 Sum_probs=401.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q psy4347 184 GYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPT 263 (816)
Q Consensus 184 ~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~ 263 (816)
.|.++.+++.++..+|++.+...+-+..+.+...+++.+++-|++||+..++|.|++|++.|.+.++..+...+..++..
T Consensus 863 vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~ 942 (1381)
T KOG0054|consen 863 VYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQS 942 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHH
Confidence 33444455666677899999999999999999999999999999999999999999999999999998888777777777
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHH
Q psy4347 264 IFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEAD 343 (816)
Q Consensus 264 v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~ 343 (816)
++.++.+.+++ .+..|++.++++.+..++..+..++.+-.+...+-.....+-..+++.|++.|+.|||+|+.|+++.+
T Consensus 943 ~~~~l~~~~vi-~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~ 1021 (1381)
T KOG0054|consen 943 LLNVLGILVVI-SYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQ 1021 (1381)
T ss_pred HHHHHHHHHHh-hHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHH
Confidence 76665443433 33456655444443333333333222222222222223334566899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCHHHHH
Q psy4347 344 RYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIA--HGNLTVGDLV 421 (816)
Q Consensus 344 r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~--~G~ltvG~lv 421 (816)
++.+..+...+..+-. ...++++++ -..++.++. ++..+...++ .+..+.|.+-
T Consensus 1022 ~~~~~~D~~~~~~f~~------------------~~a~RWla~---Rle~ig~~~---v~~~al~~vl~~~~~~~~g~vG 1077 (1381)
T KOG0054|consen 1022 ENDELIDENSRAFFLS------------------ISANRWLAV---RLELLGNLV---VLIAALFAVLLPSGLISPGLVG 1077 (1381)
T ss_pred HHHHHhhhhHHHHHHH------------------HHHHHHHHH---HHHHHHHHH---HHHHHHHHHHccCCCCCcchHH
Confidence 9988887766654433 001233222 122222222 1222222222 2226788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc-cccCCccccCCCCccEEEEeeEEEeCCCcccccc
Q psy4347 422 MVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKN-KANALPLVLTTSNASIEFRDVNFSYIDKHTKRIF 500 (816)
Q Consensus 422 af~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~-~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL 500 (816)
..++|+.++..-++.+.....++...+++.||+.+..+.|+|.+. .+...+.+..+..|+|+|+|++.+|.+ +.++||
T Consensus 1078 Lslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp-~lp~VL 1156 (1381)
T KOG0054|consen 1078 LSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP-NLPLVL 1156 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC-CCcchh
Confidence 888999999999999999999999999999999999998776111 111112233456799999999999976 357899
Q ss_pred eeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhc
Q psy4347 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINY 580 (816)
Q Consensus 501 ~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~ 580 (816)
+||||+|+|||+|||||.+|||||||++.|.|+.+|.+|+|.|||+||.++++.+||++++++||||.||+||||.|+.-
T Consensus 1157 k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP 1236 (1381)
T KOG0054|consen 1157 KGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP 1236 (1381)
T ss_pred cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q psy4347 581 GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660 (816)
Q Consensus 581 ~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~ 660 (816)
.+ ..+|+++|+|++.+++.++|.++|.|+|+.|.|+|.|+|-||||.+++||||+|+++||+||||||++|++|+..||
T Consensus 1237 f~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ 1315 (1381)
T KOG0054|consen 1237 FD-EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 1315 (1381)
T ss_pred cc-ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHH
Confidence 54 47899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhh
Q psy4347 661 SSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMR 707 (816)
Q Consensus 661 ~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~ 707 (816)
+.|++..++||+|.||||++||.++| |+|+|.|++.+|++++++.+.
T Consensus 1316 ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~ 1369 (1381)
T KOG0054|consen 1316 KTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFS 1369 (1381)
T ss_pred HHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHH
Confidence 99999999999999999999999999 999999999999999877664
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.3e-70 Score=697.58 Aligned_cols=458 Identities=23% Similarity=0.312 Sum_probs=371.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy4347 202 VFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSE 281 (816)
Q Consensus 202 l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~~~~~ 281 (816)
...+++.++...++..+|+|+++++..++++.++|+++++++.|++.++.+.. .+..++..++.+++..+ ++ .+.
T Consensus 364 ~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~-~l---~~~ 438 (1495)
T PLN03232 364 NVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMV-LL---YQQ 438 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HH---HHH
Confidence 34678888889999999999999999999999999999999999998888753 33444434333322211 11 123
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q psy4347 282 FSLLAVSCVG---IYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALK 358 (816)
Q Consensus 282 LaLi~l~~~~---l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k 358 (816)
+++.+++.++ +++.+..++.++..+..++..+..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+
T Consensus 439 lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~ 518 (1495)
T PLN03232 439 LGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRK 518 (1495)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222 2222334455666777777777888899999999999999999999999999998877665555444
Q ss_pred hcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 359 TSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLG 438 (816)
Q Consensus 359 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~ 438 (816)
. ....++..+..... ...+.++++|++.+.+|.+|+|.++++++++..+..|+..+.
T Consensus 519 ~---------------------~~~~~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~ 575 (1495)
T PLN03232 519 A---------------------QLLSAFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLP 575 (1495)
T ss_pred H---------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 11111111111111 112334677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCC
Q psy4347 439 SVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGG 518 (816)
Q Consensus 439 ~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~ 518 (816)
..+..+.++.++++|+.++++.+++..+.. .+. ....+.|+|+||+|+|+++.++++|+|+||+|++||++|||||
T Consensus 576 ~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~--~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~ 651 (1495)
T PLN03232 576 NLLSQVVNANVSLQRIEELLLSEERILAQN--PPL--QPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGG 651 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccc--CCc--CCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECC
Confidence 999999999999999999998765432111 111 1123469999999999753346899999999999999999999
Q ss_pred CCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcC
Q psy4347 519 SGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLAD 598 (816)
Q Consensus 519 sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~ 598 (816)
||||||||+++|+|+|+|++|.+. .+|++|+||+|+|+||++||+|||+||++ .+++++.++++.++
T Consensus 652 sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~ 718 (1495)
T PLN03232 652 TGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTA 718 (1495)
T ss_pred CCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhC
Confidence 999999999999999999999773 46789999999999999999999999986 78999999999999
Q ss_pred ChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEEec
Q psy4347 599 LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS-LKTASRNKTTICIAH 677 (816)
Q Consensus 599 l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~i~IaH 677 (816)
++++++.||+|+||.|||+|.+||||||||||||||++++|+||||||||||||++++++|.+. ++...+++|+|+|||
T Consensus 719 L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH 798 (1495)
T PLN03232 719 LQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798 (1495)
T ss_pred CHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999765 566667899999999
Q ss_pred ChhHHHhcc-------CeEEEEcChhHHhhcCch
Q psy4347 678 RLSTIKHLL-------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 678 rls~i~~~d-------g~i~~~g~~~~L~~~~~~ 704 (816)
|++++..|| |+|++.|+|+||++.++.
T Consensus 799 ~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~ 832 (1495)
T PLN03232 799 QLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSL 832 (1495)
T ss_pred ChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchh
Confidence 999999999 999999999999987653
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.9e-69 Score=687.01 Aligned_cols=459 Identities=22% Similarity=0.304 Sum_probs=367.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy4347 203 FASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEF 282 (816)
Q Consensus 203 ~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~~~~~L 282 (816)
..+++.++...++..+|+|+++++..++.+.++|+++++++.|++.+..+... +..++..++.++++.+++.....| .
T Consensus 365 ~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~-~ 442 (1622)
T PLN03130 365 VMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGV-A 442 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 45788888899999999999999999999999999999999999999887643 344444444333222221111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcch
Q psy4347 283 SLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTS 362 (816)
Q Consensus 283 aLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~ 362 (816)
+++.++++++++.+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+.
T Consensus 443 ~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~--- 519 (1622)
T PLN03130 443 SLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKA--- 519 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---
Confidence 11222222233333444555666666666777788889999999999999999999999999887666544433332
Q ss_pred hhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 363 LATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYR 442 (816)
Q Consensus 363 ~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~ 442 (816)
....++..++...+ ...+.++++|++.+..|.+|+|.+++++++...+..|+..+...+.
T Consensus 520 ------------------~~~~~~~~~~~~~~--~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 520 ------------------QLLSAFNSFILNSI--PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred ------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111 1134566788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCc
Q psy4347 443 EVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSG 522 (816)
Q Consensus 443 ~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsG 522 (816)
.+.++.++++|+.++++.++..... +. +.. ...+.|+|+||+|+|+++.++++|+|+||+|++||++|||||||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~-~~-~~~--~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSG 655 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLP-NP-PLE--PGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEG 655 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCccccccc-CC-ccc--CCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCC
Confidence 9999999999999999865432111 11 111 1134699999999997533468999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCc-ceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChh
Q psy4347 523 KSTIIRLLYRFFEPNA-GAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601 (816)
Q Consensus 523 KSTl~~ll~gl~~p~~-G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~ 601 (816)
||||+++|+|+|+|++ |+|.+ |.+|+||+|+|+||++||||||+||+| .+++++.++++.+++++
T Consensus 656 KSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~ 721 (1622)
T PLN03130 656 KTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQH 721 (1622)
T ss_pred HHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHH
Confidence 9999999999999999 99974 567999999999999999999999987 68899999999999999
Q ss_pred HHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCEEEEEecChh
Q psy4347 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS-SLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 602 ~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~-~l~~~~~~~T~i~IaHrls 680 (816)
+|+.||+|+||.|||+|.+|||||||||+||||++++|+||||||||||||++++++|.+ .++...+++|+|+||||++
T Consensus 722 di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~ 801 (1622)
T PLN03130 722 DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLH 801 (1622)
T ss_pred HHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHh
Confidence 999999999999999999999999999999999999999999999999999999998865 4666667899999999999
Q ss_pred HHHhcc-------CeEEEEcChhHHhhcCch
Q psy4347 681 TIKHLL-------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 681 ~i~~~d-------g~i~~~g~~~~L~~~~~~ 704 (816)
.+..+| |+|++.|+|++|++.++.
T Consensus 802 ~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~ 832 (1622)
T PLN03130 802 FLSQVDRIILVHEGMIKEEGTYEELSNNGPL 832 (1622)
T ss_pred HHHhCCEEEEEeCCEEEEeCCHHHHHhcchh
Confidence 999999 999999999999987653
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-68 Score=624.66 Aligned_cols=456 Identities=18% Similarity=0.197 Sum_probs=354.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 194 GFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSI 273 (816)
Q Consensus 194 ~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~i 273 (816)
++.+++.++...++.++..++|.++|+|++++|++||+++++|++++|+++|.+.+...+.. +..++..++.++ +.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i-~~~~ 140 (547)
T PRK10522 63 AVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTL-GSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHH-HHHH
Confidence 35567888889999999999999999999999999999999999999999988887765443 333444433332 2344
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcch---HHHHHHHHHHHH
Q psy4347 274 LSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNE---KFEADRYEGVLK 350 (816)
Q Consensus 274 l~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E---~~~~~r~~~~~~ 350 (816)
++++++|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 567789999999999998888777777777777777777888899999999999999996 5544 345677887777
Q ss_pred HHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy4347 351 KYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQL 430 (816)
Q Consensus 351 ~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l 430 (816)
++.+...+. ............++..+...+++++++.. +..+++.+.++..+...+
T Consensus 220 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 275 (547)
T PRK10522 220 EYRHHIIRA---------------------DTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFL 275 (547)
T ss_pred HHHhhhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHH
Confidence 766655443 11111111111111111112222333222 223444555555555567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCC
Q psy4347 431 SMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAG 510 (816)
Q Consensus 431 ~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G 510 (816)
..|+..+...+..++.+..+++|+.++++.+++.... ...+. +..+.|+|+||+|+|++ ++++|+|+||+|++|
T Consensus 276 ~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~-~~~~~---~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G 349 (547)
T PRK10522 276 RTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP-RPQAF---PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRG 349 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccccc---CcCceEEEEEEEEEeCC--CCeEEecceEEEcCC
Confidence 7899999999999999999999999997654432111 11111 11357999999999975 457999999999999
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHH
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEET 590 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i 590 (816)
|++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+||+++|++|++|| + ++.+++++
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~ 425 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALV 425 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 3 45677888
Q ss_pred HHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--C
Q psy4347 591 IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--R 668 (816)
Q Consensus 591 ~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~ 668 (816)
.++++..++.+++. .|+|. .+|.+||||||||++||||++++|++||||||||+||+++|+.+.+.+.+.. +
T Consensus 426 ~~~~~~~~l~~~~~-~~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 499 (547)
T PRK10522 426 EKWLERLKMAHKLE-LEDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM 499 (547)
T ss_pred HHHHHHcCCchhhh-ccccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 88888888776654 34442 2489999999999999999999999999999999999999999999987543 4
Q ss_pred CCEEEEEecChhHHHhcc-------CeEEEE
Q psy4347 669 NKTTICIAHRLSTIKHLL-------GYKAHR 692 (816)
Q Consensus 669 ~~T~i~IaHrls~i~~~d-------g~i~~~ 692 (816)
++|+|+||||+++++.|| |+++|.
T Consensus 500 ~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 500 GKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 799999999999999998 777765
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.7e-67 Score=627.04 Aligned_cols=471 Identities=16% Similarity=0.144 Sum_probs=389.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy4347 185 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 264 (816)
Q Consensus 185 ~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v 264 (816)
++++.++..+..+++.++...+..++..+++.++|+++...++.||++ ++|++.+|+++|++.+.......+..++..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~ 223 (659)
T TIGR00954 145 APPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPI 223 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778888889999999999999999999999999999987 7899999999999999888887777777777
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHH
Q psy4347 265 FELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADR 344 (816)
Q Consensus 265 ~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r 344 (816)
+.+++..++++..++|.+++++++.+|+.+++..++.++..+...+.++..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 224 ~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~ 303 (659)
T TIGR00954 224 LDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKET 303 (659)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHH
Confidence 76654444444448999999999999999988888888888888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----cCCCCH
Q psy4347 345 YEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFST--AMTLSMIFAAREIA-----HGNLTV 417 (816)
Q Consensus 345 ~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l--~~~~vl~~G~~lV~-----~G~ltv 417 (816)
|++.++++.+...+. .+..+.+.++..++... ..+++++.|...+. .|.+|+
T Consensus 304 ~~~~~~~l~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~ 362 (659)
T TIGR00954 304 VMSSFYRLVEHLNLI---------------------IKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSE 362 (659)
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCH
Confidence 999999998887776 34444445554444432 22233333342332 278999
Q ss_pred HHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccc-------c-CC-------------c
Q psy4347 418 GDLVM-VNGL---LFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKA-------N-AL-------------P 472 (816)
Q Consensus 418 G~lva-f~~~---~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~-------~-~~-------------~ 472 (816)
|.+++ |+.+ +.++..|+..++..+.+++++.++.+|++++++.++++.+.. . .. .
T Consensus 363 g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (659)
T TIGR00954 363 EELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGR 442 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccc
Confidence 98776 5554 567799999999999999999999999999998755432100 0 00 0
Q ss_pred cccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC
Q psy4347 473 LVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD 552 (816)
Q Consensus 473 ~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~ 552 (816)
.......+.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|+
T Consensus 443 ~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~------- 513 (659)
T TIGR00954 443 GIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA------- 513 (659)
T ss_pred cccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-------
Confidence 001112356999999999975 45799999999999999999999999999999999999999999999874
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCC-------CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGD-------KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~-------~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
|++|+||||+|++|++|++|||.++. ++.+++++.++++.+++++++.+ |.||||..+ .+.+|||||
T Consensus 514 ----~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGq 587 (659)
T TIGR00954 514 ----KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGE 587 (659)
T ss_pred ----CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHH
Confidence 56899999999999999999999974 34577899999999999999988 999999987 467999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEEcC
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHRKT 694 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~g~ 694 (816)
|||++|||||+++|++||||||||+||+++++.+.+.+++. ++|+|+||||+++++.||--++-.|.
T Consensus 588 kQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~~ 654 (659)
T TIGR00954 588 KQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDGR 654 (659)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999875 89999999999999988754444443
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.2e-62 Score=628.95 Aligned_cols=475 Identities=19% Similarity=0.257 Sum_probs=373.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 189 RICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELA 268 (816)
Q Consensus 189 ~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v 268 (816)
.++.+++.....+...+++.++...++..+|+|+++++..++++.++|+++++++.|++.+..+.. .+..+...++.++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~ 446 (1522)
T TIGR00957 368 ACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVI 446 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334444455555667889999999999999999999999999999999999999999888776543 2333444444333
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHH
Q psy4347 269 LISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGV 348 (816)
Q Consensus 269 ~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~ 348 (816)
+...++....+| .+++.++++++++.+..++.++..+.+++..+..++..+.+.|.++|+++||.|+.|+.+.+++++.
T Consensus 447 ~~~~ll~~~~g~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~ 525 (1522)
T TIGR00957 447 LALYFLWLNLGP-SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGI 525 (1522)
T ss_pred HHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 322222111222 2344444445555555666667777777777888888999999999999999999999999999887
Q ss_pred HHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Q psy4347 349 LKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAH--GNLTVGDLVMVNGL 426 (816)
Q Consensus 349 ~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~--G~ltvG~lvaf~~~ 426 (816)
.++..+...+. .....+.... .. .....+.++.++.+.+.. +.++.+..++.+++
T Consensus 526 r~~e~~~~~~~---------------------~~~~~~~~~~-~~-~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l 582 (1522)
T TIGR00957 526 RQEELKVLKKS---------------------AYLHAVGTFT-WV-CTPFLVALITFAVYVTVDENNILDAEKAFVSLAL 582 (1522)
T ss_pred HHHHHHHHHHH---------------------HHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 76655443332 1111111111 01 111112223345666663 57899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEE
Q psy4347 427 LFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFT 506 (816)
Q Consensus 427 ~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~ 506 (816)
+..+..|+..+...+..++++.++++|+.++++.+++........... ....+.|+++|++|+|++ .++++|+|+||+
T Consensus 583 ~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~ 660 (1522)
T TIGR00957 583 FNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIK-PGEGNSITVHNATFTWAR-DLPPTLNGITFS 660 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccC-CCCCCcEEEEEeEEEcCC-CCCceeeeeEEE
Confidence 999999999999999999999999999999998765422110000010 011236999999999975 246799999999
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKS 586 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~ 586 (816)
|++||+++|+||||||||||+++|+|+++|++|+|.+|| +|+||||+|++|++||+|||.+|.+ .+
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~ 726 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LN 726 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cC
Confidence 999999999999999999999999999999999999998 4999999999999999999999976 56
Q ss_pred HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-
Q psy4347 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT- 665 (816)
Q Consensus 587 ~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~- 665 (816)
+++..++++.+++.+++..+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.|.+.+.+
T Consensus 727 ~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~ 806 (1522)
T TIGR00957 727 EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGP 806 (1522)
T ss_pred HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhh
Confidence 6788888999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred --hcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCch
Q psy4347 666 --ASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 666 --~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~ 704 (816)
+.+++|+|+|||+++.+..|| |+|++.|+|+++.+.++.
T Consensus 807 ~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~ 854 (1522)
T TIGR00957 807 EGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGA 854 (1522)
T ss_pred hhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchh
Confidence 456899999999999999998 999999999999987654
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.6e-60 Score=600.85 Aligned_cols=477 Identities=18% Similarity=0.221 Sum_probs=381.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy4347 182 ILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIV 261 (816)
Q Consensus 182 ~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii 261 (816)
+++++++.++..++.....+...+++.++...+...+|+|+++++...+++.++|+++++++.|++.+...+... ..+.
T Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~ 203 (1490)
T TIGR01271 125 ALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVW 203 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHH
Confidence 334444455556666667777788888998999999999999999999999999999999999999888866543 2333
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHH
Q psy4347 262 PTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFE 341 (816)
Q Consensus 262 ~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~ 341 (816)
..++.++++++ +++...++.+++.++++++++.+..++.++..+.+++.....++..+.+.|.++||++||.|+.|+.+
T Consensus 204 ~~pi~i~~~~~-lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~ 282 (1490)
T TIGR01271 204 IAPLQVILLMG-LIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAM 282 (1490)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHH
Confidence 44444433333 33333445667777777777777788888888888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q psy4347 342 ADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLV 421 (816)
Q Consensus 342 ~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lv 421 (816)
.+++++..++-.+...+. .........+. ......+.++.++++.+..| ++++.++
T Consensus 283 ~~~i~~~R~~El~~~~~~---------------------~~~~~~~~~~~--~~~~~~~~~~~f~~y~~~~~-~~~~~~f 338 (1490)
T TIGR01271 283 EKIIKNIRQDELKLTRKI---------------------AYLRYFYSSAF--FFSGFFVVFLSVVPYALIKG-IILRRIF 338 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 888877665544433332 11111111111 11122334455567766655 7899999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCC------
Q psy4347 422 MVNGLLFQLSMPL-GFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDK------ 494 (816)
Q Consensus 422 af~~~~~~l~~pl-~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~------ 494 (816)
++++++..+..|+ ..+...+..+.++.++++||.++|+.++..... . . .....|+++|++|.|+..
T Consensus 339 t~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~-~--~----~~~~~i~~~~~~f~~~~~~~~~~~ 411 (1490)
T TIGR01271 339 TTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE-Y--N----LTTTEVEMVNVTASWDEGIGELFE 411 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc-c--c----CCCCceEEecceEecCCccccccc
Confidence 9999999998887 479999999999999999999999875432111 0 0 012359999999999531
Q ss_pred -------------------------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC
Q psy4347 495 -------------------------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN 549 (816)
Q Consensus 495 -------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~ 549 (816)
..+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---- 487 (1490)
T TIGR01271 412 KIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---- 487 (1490)
T ss_pred cccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----
Confidence 014689999999999999999999999999999999999999999999998
Q ss_pred CCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 550 DVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 550 ~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
.|+||+|+|++|++||+|||.||.+ .++++..++++.+++.+++..+|+|++|.|||+|.+|||||||||
T Consensus 488 ---------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 488 ---------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARI 557 (1490)
T ss_pred ---------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHH
Confidence 3999999999999999999999965 555667777888899999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSS-LKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
+||||++++|+|+|||||||+||+.+++.|.+. ++.+.+++|+|+|||+++.+..|| |+|++.|+++++.+.
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999999999985 667777999999999999999998 999999999999876
Q ss_pred Cchh
Q psy4347 702 NSSA 705 (816)
Q Consensus 702 ~~~~ 705 (816)
++.+
T Consensus 638 ~~~~ 641 (1490)
T TIGR01271 638 RPDF 641 (1490)
T ss_pred ChHH
Confidence 5433
No 45
>KOG0054|consensus
Probab=100.00 E-value=5e-59 Score=570.39 Aligned_cols=484 Identities=21% Similarity=0.257 Sum_probs=384.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHH
Q psy4347 179 TSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVF 258 (816)
Q Consensus 179 ~~l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~ 258 (816)
+.++++++++.++..++..--.+...+++.++...+-..+|+|.++++-.--..+.+|++++-++.|.+.+.++...+ .
T Consensus 242 ~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h 320 (1381)
T KOG0054|consen 242 YLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-H 320 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-H
Confidence 344455556666777776666777888899999999999999999999988778899999999999999888876543 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcch
Q psy4347 259 NIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNE 338 (816)
Q Consensus 259 ~ii~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E 338 (816)
.+....+.++++..++...++|. +++.++++.+++.+..++.++..+++.+..+..++.-....|.++||++||.|+.|
T Consensus 321 ~~w~~Plqi~~~l~lLy~~LG~s-a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE 399 (1381)
T KOG0054|consen 321 LLWSAPLQIILALYLLYGLLGPS-ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWE 399 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhH
Confidence 44445555544333333233333 34455555556666677778888888887788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCH
Q psy4347 339 KFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAARE-IAHGNLTV 417 (816)
Q Consensus 339 ~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~l-V~~G~ltv 417 (816)
+.+.++.++.-++-.+.-.+. ....++..+...... ..+.++.++++. ...+.+|.
T Consensus 400 ~~F~~~I~~~R~~El~~lrk~---------------------~~~~~~~~~~~~~~p--~lv~~~tF~~~v~~~~~~lt~ 456 (1381)
T KOG0054|consen 400 KPFLKKIEDLRQKELKLLRKS---------------------AYLSALNSFLNFFSP--VLVSVVTFVVFVLLLGNLLTA 456 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH--HHHHHHHHHHHhhccCccccH
Confidence 988888776544433322222 111111111111111 112222333443 45668888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCccc
Q psy4347 418 GDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTK 497 (816)
Q Consensus 418 G~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~ 497 (816)
...++..+++..+..|+..+...+..+.++.++++|+.+++..+....+.... ....+....|+++|.+|++++.+..
T Consensus 457 ~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~--~~~~~~~~~i~i~~~sfsW~~~~~~ 534 (1381)
T KOG0054|consen 457 STAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER--SPDEAGENAIEIKNGSFSWDSESPE 534 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc--CCCCCCCceEEEeeeeEecCCCCCc
Confidence 88999999999999999999999999999999999999999876433221110 0111224469999999999763345
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHH
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYN 577 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eN 577 (816)
+.|+||||+|++|+.+||||+.|||||+|+..|+|-.+..+|+|.++|. ++||||.|++|+||||||
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreN 601 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVREN 601 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHh
Confidence 6999999999999999999999999999999999999999999999996 899999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q psy4347 578 INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITEN 657 (816)
Q Consensus 578 i~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~ 657 (816)
|.||.| .+++.-.++.+.++|..+++.||.|=.|.|||+|.+|||||||||++|||+++|++|++||+|.||+|+++.+
T Consensus 602 ILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 602 ILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred hhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 999987 7888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 658 NILSS-LKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 658 ~i~~~-l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
.|.+. |+...++||+|+|||.++.+++|| |+|++.|+|+||++.+.
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~ 734 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGG 734 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcch
Confidence 99977 666778999999999999999999 99999999999997654
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1e-57 Score=582.98 Aligned_cols=484 Identities=19% Similarity=0.271 Sum_probs=382.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh--cCChhHHHHHHHhcHHHHHHHHHHH
Q psy4347 179 TSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHL--NRQTGALSKIIDRGSRGINFVLSAM 256 (816)
Q Consensus 179 ~~l~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~--~~~~G~l~sri~~d~~~i~~~~~~~ 256 (816)
+.++++++++.++.+++...+.+...+.+.++...+...+|+|+++++...+. +.++|++++.++.|++.+..++..+
T Consensus 285 ~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~ 364 (1560)
T PTZ00243 285 LGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYC 364 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555566677777778888899999999999999999999999998776 5689999999999999998887543
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhc
Q psy4347 257 VFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFN 336 (816)
Q Consensus 257 ~~~ii~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~ 336 (816)
..+...++.+++..+++ +.+-.+.+++.++++++++.+..++.++..+.+++..+..++..+.+.|.++||++||.++
T Consensus 365 -~~l~~~Pl~li~~~~lL-~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~ 442 (1560)
T PTZ00243 365 -MYLWSSPMVLLLSILLL-SRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMA 442 (1560)
T ss_pred -HHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544433333 3344456677777777777777777777777777777888888899999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy4347 337 NEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLT 416 (816)
Q Consensus 337 ~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~lt 416 (816)
.|+.+.+++++..++-.+...+. .....+..++...... .+.++.++++.+..|.+|
T Consensus 443 wE~~f~~ri~~~R~~El~~l~~~---------------------~~~~~~~~~~~~~~p~--l~~~~~f~~y~~~g~~Lt 499 (1560)
T PTZ00243 443 WEPCFVANIEDKRARELRYLRDV---------------------QLARVATSFVNNATPT--LMIAVVFTVYYLLGHELT 499 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCC
Confidence 99999999988665544443332 1111111111111111 122234567888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc----c--c---------cc-C----------
Q psy4347 417 VGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIK----N--K---------AN-A---------- 470 (816)
Q Consensus 417 vG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~----~--~---------~~-~---------- 470 (816)
+|.+++++.++..+..|+..+...+..+.++.++++||.++|+.++... + . .. .
T Consensus 500 ~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1560)
T PTZ00243 500 PEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDV 579 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999997654100 0 0 00 0
Q ss_pred ---Cccc---------------------------cCCCCccEEEEeeEEEeCCC--------------------------
Q psy4347 471 ---LPLV---------------------------LTTSNASIEFRDVNFSYIDK-------------------------- 494 (816)
Q Consensus 471 ---~~~~---------------------------~~~~~g~I~~~~vsf~Y~~~-------------------------- 494 (816)
.+.. .....+.+.++|++|.++..
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1560)
T PTZ00243 580 TAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKT 659 (1560)
T ss_pred cccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 00012357788888864310
Q ss_pred -----------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEE
Q psy4347 495 -----------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563 (816)
Q Consensus 495 -----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V 563 (816)
.++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ +.||||
T Consensus 660 ~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv 726 (1560)
T PTZ00243 660 PKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYV 726 (1560)
T ss_pred cccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEE
Confidence 12468999999999999999999999999999999999999999999863 469999
Q ss_pred cCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q psy4347 564 PQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILV 643 (816)
Q Consensus 564 ~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLi 643 (816)
||+|.+|++||+|||.++.+ .+.+++.++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+.+|+|||
T Consensus 727 ~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~ill 805 (1560)
T PTZ00243 727 PQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYL 805 (1560)
T ss_pred eCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999875 35567888889999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 644 FDEATSSLDSITENNILSS-LKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 644 LDE~Ts~LD~~te~~i~~~-l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
||||||+||+.+++.+.+. +....+++|+|+|||+++.+..|| |+|++.|+++++++.
T Consensus 806 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 806 LDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred EcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999988765 344446899999999999999998 999999999999864
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.2e-50 Score=434.84 Aligned_cols=226 Identities=28% Similarity=0.452 Sum_probs=210.3
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
|.|+|+||+|+|++ ++.++|+||||+|++||+++|+|+||||||||+++|+|+++ ++|+|++||.++..++...+|+.
T Consensus 1 g~i~~~nls~~~~~-~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTE-GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999974 24679999999999999999999999999999999999997 78999999999999999999999
Q ss_pred cEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q psy4347 560 IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p 639 (816)
|+||||++.+|++|+++|+.+..+ .++++++++++.+++.+++.++|+||||.++|+|.+||||||||++|||||+++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999975433 5678999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhc
Q psy4347 640 PILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSM 709 (816)
Q Consensus 640 ~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~ 709 (816)
+||||||||++||+.+.+.+++.|++..+++|+|+||||++++..|| |+|++.|++++|++.. .++..+
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~-~~~~~~ 233 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK-SHFKQA 233 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCc-HHHHHH
Confidence 99999999999999999999999998877899999999999999988 9999999999999854 455444
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=407.44 Aligned_cols=208 Identities=32% Similarity=0.526 Sum_probs=185.6
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC-CChHHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND-VDLDSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~-~~~~~lr~~ 559 (816)
-|+++||+++|++ ..||+|||++|++||+++|+||||||||||+++|.+|-+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999964 689999999999999999999999999999999999999999999999987743 378899999
Q ss_pred cEEEcCCCCcc-cccHHHHHhcCCC---CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 560 IAIVPQDPVLF-HDTILYNINYGDK---SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 560 i~~V~Q~~~LF-~~Ti~eNi~~~~~---~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
+|+|||+..|| +.|+.||++++.- ..+ .+...+.++++|+.|-....| .+|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 99999999999 6799999998721 122 234566778899999999999 7899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc--------CeEEEEcChhHHhhcC
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL--------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L~~~~ 702 (816)
||||+-+|+++++|||||||||+...++++.++++. +|.|.|+|||.+..++.+. |+|+|.|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999875 5799999999999999865 7788888877776654
No 49
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-48 Score=389.87 Aligned_cols=213 Identities=33% Similarity=0.504 Sum_probs=191.7
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCc-----ceEEECCEeCCC--CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA-----GAIYIDGKNIND--VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~-----G~I~idG~di~~--~~ 552 (816)
..++++||++.|++ +.+|+|||++|++++++|++|||||||||+++.+.|+.+..+ |+|.++|+||.+ ++
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 45899999999964 789999999999999999999999999999999999999986 999999999988 47
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCC-----C-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDK-----S-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~-----~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
...+|++||+|||.|.-|..||+||++||.. + .-+|-++++++.|.|+|.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 8999999999999999999999999999932 1 123557888999999988754 34567788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhc-c-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL-L-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~-d-------g~i~~~g~~~~L 698 (816)
||++|||||.-+|+||+||||||||||.+..+|.+.|.+++++-|+|+|||++.-...+ | |+++|.|.-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 99999999999999999999999999999999999999999999999999999887654 3 999999999888
Q ss_pred hhcC
Q psy4347 699 VRGN 702 (816)
Q Consensus 699 ~~~~ 702 (816)
..+.
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 7654
No 50
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-48 Score=406.35 Aligned_cols=211 Identities=31% Similarity=0.505 Sum_probs=189.2
Q ss_pred EEEEeeEEEeCCC--cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHH
Q psy4347 482 IEFRDVNFSYIDK--HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL---DSL 556 (816)
Q Consensus 482 I~~~~vsf~Y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~---~~l 556 (816)
|+|+|||+.|+.. ....+|+||||+|++||+.||||.||+|||||++++.+|-.|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 12569999999999999999999999999999999999999999999999999988775 556
Q ss_pred hhccEEEcCCCCccc-ccHHHHHhcCCCC--CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 557 RRHIAIVPQDPVLFH-DTILYNINYGDKS--KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~--~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
|++||++||++.|++ .||.+|++|.-.- .+ .+++.+.++.+|+.|.-.+.| .+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999996 7999999997431 12 356788999999999999988 89999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc--------CeEEEEcChhHHh
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL--------GYKAHRKTSTNLV 699 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L~ 699 (816)
+|||||+.+|+||+.|||||||||+|.+.|++.|++.. -|-|+++|||.|+.++..| |+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998753 3789999999999999866 9999999988887
Q ss_pred hcCc
Q psy4347 700 RGNS 703 (816)
Q Consensus 700 ~~~~ 703 (816)
..+.
T Consensus 231 ~~Pk 234 (339)
T COG1135 231 ANPK 234 (339)
T ss_pred cCcc
Confidence 7653
No 51
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-48 Score=395.23 Aligned_cols=209 Identities=33% Similarity=0.538 Sum_probs=189.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+|+|||++|.+ +.+++|+||+|++||.++++|||||||||++|+|.|+++|++|+|+|||.|+++++...||++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999964 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcc-cccHHHHHhcCC------CCCCHHHHHHHHHHcCCh--hHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 562 IVPQDPVLF-HDTILYNINYGD------KSKSYEETIEAAKLADLH--NSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~------~~~~~~~i~~a~~~a~l~--~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
||-|..-|| +.||.|||++-. ...-++++.+.+++.+++ +|..+.| .+|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 999999999 779999998642 112235678888999995 5888999 78999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
|||+.+|+||++|||++||||.+..++++.+.++.+ ++|+|+|||++..... +| |+|+..+++++++++.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999887643 7999999999987644 55 9999999999999876
Q ss_pred ch
Q psy4347 703 SS 704 (816)
Q Consensus 703 ~~ 704 (816)
..
T Consensus 228 an 229 (309)
T COG1125 228 AN 229 (309)
T ss_pred cH
Confidence 53
No 52
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.3e-47 Score=395.59 Aligned_cols=221 Identities=43% Similarity=0.665 Sum_probs=204.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 578999999964 2367999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
|+||++.+|+.|+.||+.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987655556677888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 642 LiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..|| |++++.|+.+++.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG 228 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccC
Confidence 999999999999999999999999877899999999999998887 99999999988887654
No 53
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-47 Score=416.47 Aligned_cols=216 Identities=30% Similarity=0.467 Sum_probs=190.7
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--C
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--V 551 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~ 551 (816)
.+.|+|+||+|+|++ ..+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.|||+|+.. .
T Consensus 78 ~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 467999999999964 24679999999999999999999999999999999999997 579999999999974 4
Q ss_pred ChHHHhhccEEEcCCCCcccccHHHHHhcCCC--CCCHHH-----HHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDK--SKSYEE-----TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 552 ~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~~~~~-----i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
+...+|+.++||||+|.+|++||+|||.|+.. ..++++ +.++++.+++ ++++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 55788999999999999999999999998632 133333 3555666665 345678899999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChh
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTST 696 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~ 696 (816)
|||||+|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||++.++.. || |+|++.|+++
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998888999999999999988 77 9999999999
Q ss_pred HHhhcC
Q psy4347 697 NLVRGN 702 (816)
Q Consensus 697 ~L~~~~ 702 (816)
++....
T Consensus 310 ~l~~~~ 315 (329)
T PRK14257 310 TIFIHP 315 (329)
T ss_pred HHhcCC
Confidence 997643
No 54
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-46 Score=388.32 Aligned_cols=220 Identities=47% Similarity=0.714 Sum_probs=202.6
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
+.|+++|++|+|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999964 3579999999999999999999999999999999999999999999999999988888888999
Q ss_pred cEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q psy4347 560 IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p 639 (816)
++|++|++.+|.+|++||+.++.+....+++.++++..++.+++..+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987655667888888899999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 640 PILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 640 ~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..|| |++++.|+.+++.+.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999999877899999999999998877 787777776666543
No 55
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.8e-46 Score=393.55 Aligned_cols=227 Identities=32% Similarity=0.496 Sum_probs=208.0
Q ss_pred CCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHh
Q psy4347 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557 (816)
Q Consensus 478 ~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr 557 (816)
..+.|+++||+++|++ .+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYEN-NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCC-CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 4678999999999965 235799999999999999999999999999999999999999999999999999988888899
Q ss_pred hccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 558 RHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
+.|+||+|++.+|++|++||+.+... ...+++.++++.+++.+++..+|.|++|.+++.+.+||||||||++|||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999976532 34567888888999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAM 706 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~ 706 (816)
+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+..|| |+|++.|+.+++.+.....+
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~ 249 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVF 249 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHH
Confidence 9999999999999999999999999998877899999999999999888 99999999999877654333
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-45 Score=385.28 Aligned_cols=221 Identities=46% Similarity=0.759 Sum_probs=203.5
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++|++++|++ .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPG-DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCC-CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 579999999965 1247999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
|++|++.+|..|++||+.++.+..+.+++.+.++..++.+++..+|.|+++.++....+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665566778888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 642 LiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..|| |++++.|+.+++.+..+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 999999999999999999999999878899999999999998887 88888888887765543
No 57
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-45 Score=386.01 Aligned_cols=218 Identities=59% Similarity=0.905 Sum_probs=202.7
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 578999999964 357999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
|++|++.+|++|++||+.++.+..+++++.++++..++.+.+..+|.|++|.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998766666778888889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 642 LiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|||||||++||+.+...+.+.|+++.++.|+|++||+++.+..|| |++++.|+.+++.+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999998766899999999999998887 888888887777654
No 58
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-45 Score=382.71 Aligned_cols=205 Identities=39% Similarity=0.596 Sum_probs=192.3
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
+.|+++|++|+|+. .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRP-NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCC-CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 35899999999974 23579999999999999999999999999999999999999999999999999988888889999
Q ss_pred cEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q psy4347 560 IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p 639 (816)
++|+||++.+|++|++|||.+... .+.+++.++++..++.+++.++|.|++|.+++.+.+||||||||++|||||+.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987654 4677889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 640 PILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 640 ~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
++|||||||++||+.+...+.+.|+++.++.|+|++||++..+..||
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d 205 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSD 205 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCC
Confidence 99999999999999999999999998877899999999999998876
No 59
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-45 Score=400.12 Aligned_cols=207 Identities=33% Similarity=0.506 Sum_probs=187.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .. +|+|+||+|++||+++|+|||||||||++++|+||.+|++|+|+|||.|+++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~--~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGS--FE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCC--ce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 5899999999965 22 999999999999999999999999999999999999999999999999999998874 899
Q ss_pred EEEcCCCCcc-cccHHHHHhcCCCC------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLF-HDTILYNINYGDKS------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF-~~Ti~eNi~~~~~~------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|+|||+..|| +.||+|||+|+-.. .-++++.++++..++.+.+++.| .+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 9999999999 67999999998432 22578999999999999999999 789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhc-c-------CeEEEEcChhHHhhcCc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHL-L-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~-d-------g~i~~~g~~~~L~~~~~ 703 (816)
||+++|++++||||.|+||+.....+...|+++.+ +.|+|+|||+...+... | |+|.+.|++.|+.+...
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999887543 68999999998887664 3 99999999999887654
No 60
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=6.6e-45 Score=377.19 Aligned_cols=210 Identities=41% Similarity=0.636 Sum_probs=191.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
+|+++|+++.|++ .+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCC-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 5899999999964 235799999999999999999999999999999999999999999999999999887777788899
Q ss_pred EEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q psy4347 561 AIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640 (816)
Q Consensus 561 ~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~ 640 (816)
+||+|++.+|..|+.||+.++.+..+.+++.++++..++.+.+.++|.|++|.+.+...+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999998755455667888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 641 ILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..|| +|+..
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d-~v~~l 211 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVD-RIIVM 211 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCC-EEEEE
Confidence 9999999999999999999999999866689999999999886555 44433
No 61
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=6.4e-45 Score=381.91 Aligned_cols=220 Identities=49% Similarity=0.771 Sum_probs=200.5
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++|+++.|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999996422357999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
|++|++.+|..|++||+.++.+....+++.+.++..++.+++..+|.|+++.+.....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665556677778888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 642 LiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..|| |++++.|+.+++.+.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 999999999999999999999998777899999999999998777 888888877776654
No 62
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.3e-41 Score=387.64 Aligned_cols=461 Identities=20% Similarity=0.235 Sum_probs=333.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhH------HHHHHHhcHHHHHHHHHHHHHHH
Q psy4347 187 IARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGA------LSKIIDRGSRGINFVLSAMVFNI 260 (816)
Q Consensus 187 i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~------l~sri~~d~~~i~~~~~~~~~~i 260 (816)
+...+...+..++.|+...+..+...-+...+.++.+...-.|+... .|. .=.|+..|..........+..++
T Consensus 94 ~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~-~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~ 172 (604)
T COG4178 94 IIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQ-AGGIGLIDNPDQRIQEDIRNFTETTLDLSFGL 172 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHh-cccccCCCChHHhHHHHHHHHHhhHHHHHHHH
Confidence 33333444555677777777777777777777788777774444333 321 23577776666555555556667
Q ss_pred HHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy4347 261 VPTIFELALISSILSYK----------CGSEFSLLAVSCVGIYT----AYTLSITQWRTQFRVNMNKAENEAGNKAIDSL 326 (816)
Q Consensus 261 i~~v~~~v~~~~il~~~----------~~~~LaLi~l~~~~l~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l 326 (816)
+.++++++..+.+++-. +++.+.-.++.++.+|+ ++.+++++...+..-+.++.++..-..+.-.-
T Consensus 173 l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~ 252 (604)
T COG4178 173 LQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVR 252 (604)
T ss_pred HHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHH
Confidence 77666655544444300 11222222222223333 34444555555555566666777777778888
Q ss_pred chHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 327 INYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFA 406 (816)
Q Consensus 327 ~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G 406 (816)
.+.+.|-.++.|+.|.++.+.......+...+. ......+..++.....+..++-+.++
T Consensus 253 enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l---------------------~~~~~~l~~~~~gy~~~s~v~P~li~ 311 (604)
T COG4178 253 ENAEAIALYRGEKVERRRLDDRFDAVLGNWRRL---------------------VRAQIRLTWFQLGYGWLSVVLPILIA 311 (604)
T ss_pred hhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHhhHHhhhhhhHHHHHHHHHhc
Confidence 899999999999999988887777666543333 11111111222112222233444455
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CccccccccCCcccc-CCCC
Q psy4347 407 AREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLK------EPTIKNKANALPLVL-TTSN 479 (816)
Q Consensus 407 ~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~------~~e~~~~~~~~~~~~-~~~~ 479 (816)
+-....|+++.|+++.....+.++...++.+...+..+..-.+.+.|+.++.+. +++...... ..... ....
T Consensus 312 ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~ 390 (604)
T COG4178 312 APRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNAD 390 (604)
T ss_pred cHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-cccccccccc
Confidence 667789999999999999999999999999999999999999999999888632 222111110 00000 0014
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+|+||+..-|+ +...|+++||+|++||.+-|.||||||||||+|.|+|+++--+|+|-+-. -..
T Consensus 391 ~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~ 457 (604)
T COG4178 391 HGITLENLSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSA 457 (604)
T ss_pred ceeEEeeeeEECCC--CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCc
Confidence 67999999999887 56899999999999999999999999999999999999999999886541 123
Q ss_pred cEEEcCCCCcccccHHHHHhcCCCC--CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 560 IAIVPQDPVLFHDTILYNINYGDKS--KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~~~~~--~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
+-|+||.|++=.||+||=|+|.++. .+|+++.+++.++++.+++.++.+--+ =...||+|||||||+||.|++
T Consensus 458 ~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~ 532 (604)
T COG4178 458 LLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLH 532 (604)
T ss_pred eEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHc
Confidence 7899999999999999999998764 789999999999999999998753211 236799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCe
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGY 688 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~ 688 (816)
+|++++|||+|||||+++|..+.+.+++...+.|+|-|.||.....-.++.
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~ 583 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQ 583 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhh
Confidence 999999999999999999999999999988899999999998887766643
No 63
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.6e-46 Score=365.43 Aligned_cols=195 Identities=31% Similarity=0.472 Sum_probs=177.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHHhh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL---DSLRR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~---~~lr~ 558 (816)
|+|+||++.|++ ++++|+||||+|++||++-++||||||||||+|||++-..|++|+|.++|+|+..+.. .-+|+
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 899999999987 5789999999999999999999999999999999999999999999999999998764 45899
Q ss_pred ccEEEcCCCCcc-cccHHHHHhcCCC------CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 559 HIAIVPQDPVLF-HDTILYNINYGDK------SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 559 ~i~~V~Q~~~LF-~~Ti~eNi~~~~~------~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
+||+|+||.-|. +-|+.||++|.-. ..-.+++.++++.+|+.+-...|| .+|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999988 5699999998632 112367889999999999999999 7899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhccCeE
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLLGYK 689 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~dg~i 689 (816)
|||++.+|++||-||||.+|||.+...|++.+.++ ..|.|+++.||+.+.+..+.-++
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence 99999999999999999999999999999999885 45899999999999999987333
No 64
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.3e-45 Score=374.54 Aligned_cols=210 Identities=31% Similarity=0.502 Sum_probs=185.2
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHH
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL---DSL 556 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~---~~l 556 (816)
..|++++|+|+|++ +.|++||||+|++||+++|+||||||||||+|+|.|+..|++|+|+++|.|+.+++. ..+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 35999999999964 789999999999999999999999999999999999999999999999999999876 456
Q ss_pred hhccEEEcCCCCccc-ccHHHHHhcCCC---CCCHHHHH----HHHHHcCChhH-HHhCCCCccccccCCCCCCChhHHH
Q psy4347 557 RRHIAIVPQDPVLFH-DTILYNINYGDK---SKSYEETI----EAAKLADLHNS-IIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~-~Ti~eNi~~~~~---~~~~~~i~----~a~~~a~l~~~-I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
|+++|++||...||+ -||+||++|.-. ..+++++. .-++++|+... -..+| ++||||++.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 999999999999995 499999998622 23444443 34577899777 66788 899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc--------CeEEEEcChhH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL--------GYKAHRKTSTN 697 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~ 697 (816)
|+|||||+.-||+||++|||||+|||.+...+-+.|+++.+ +.|+|+|||+++++..++ |+|+..|+.+|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988654 789999999999998863 88888999988
Q ss_pred HhhcCc
Q psy4347 698 LVRGNS 703 (816)
Q Consensus 698 L~~~~~ 703 (816)
+.+.+.
T Consensus 233 l~~sd~ 238 (263)
T COG1127 233 LLASDD 238 (263)
T ss_pred HHhCCC
Confidence 887654
No 65
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.2e-45 Score=401.45 Aligned_cols=210 Identities=30% Similarity=0.477 Sum_probs=185.2
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH---Hh
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS---LR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~---lr 557 (816)
|+++||+++|+... ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 79999999996311 247999999999999999999999999999999999999999999999999999887654 58
Q ss_pred hccEEEcCCCCcc-cccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 558 RHIAIVPQDPVLF-HDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 558 ~~i~~V~Q~~~LF-~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
+.||||||++.+| +.|++||++++.. ..+ .+++.++++..++.+...+.| .+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 8999999999999 5799999997532 122 245778889999988776666 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. || |+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7999999999999966 66 99999999999876
Q ss_pred cC
Q psy4347 701 GN 702 (816)
Q Consensus 701 ~~ 702 (816)
..
T Consensus 231 ~p 232 (343)
T TIGR02314 231 HP 232 (343)
T ss_pred CC
Confidence 54
No 66
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-45 Score=376.91 Aligned_cols=196 Identities=30% Similarity=0.442 Sum_probs=176.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.+++++|+++|+. ..||+||||+|++||+|+||||||||||||+++|.||.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999964 6899999999999999999999999999999999999999999999999988544 3458
Q ss_pred EEEcCCCCcc-cccHHHHHhcCCCCC------CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLF-HDTILYNINYGDKSK------SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF-~~Ti~eNi~~~~~~~------~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
+||||++.|| --||+||+.++-... ..+.+.++++.+|+.+|-.+.| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 9999999999 469999999985421 2356888899999999999999 799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEEEcCh
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAHRKTS 695 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~~g~~ 695 (816)
||+.+|+||+||||++|||+.|...+++.+.++.+ ++|+++|||+.+..-...+||+..++.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999887643 699999999999998888898887653
No 67
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-44 Score=371.57 Aligned_cols=194 Identities=37% Similarity=0.504 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH---H-
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS---L- 556 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~---l- 556 (816)
|+++||++.|..+. ..++|+||||+|++||+|||+||||||||||+++|.|+..|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996421 247999999999999999999999999999999999999999999999999999988533 3
Q ss_pred hhccEEEcCCCCccc-ccHHHHHhcC----CCCC--CHHHHHHHHHHcCChhHHH-hCCCCccccccCCCCCCChhHHHH
Q psy4347 557 RRHIAIVPQDPVLFH-DTILYNINYG----DKSK--SYEETIEAAKLADLHNSII-KWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~-~Ti~eNi~~~----~~~~--~~~~i~~a~~~a~l~~~I~-~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
|++||||||+..|+. .|++|||.+. .... ..+.+.+.++..|+.+... +.| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 557999999999995 5999999953 2222 2456677778889987666 666 7899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d 686 (816)
|||||||+.+|+|++.||||++||+++.+.|++.++++. .|+|+|+|||+......||
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 999999999999999999999999999999999999874 3789999999999999887
No 68
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-44 Score=377.77 Aligned_cols=206 Identities=31% Similarity=0.499 Sum_probs=178.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHHhh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL---DSLRR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~---~~lr~ 558 (816)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999964 579999999999999999999999999999999999999999999999999987764 56788
Q ss_pred ccEEEcCCCCcccc-cHHHHHhcCCC---CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 559 HIAIVPQDPVLFHD-TILYNINYGDK---SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~-Ti~eNi~~~~~---~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
.|+||||++.+|.. |++||+.++.. ..+ .+++.++++..++.++..+.| .+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHH
Confidence 99999999999975 99999987521 122 234566777777766554443 579999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998643 7899999999998876 55 88888888888765
Q ss_pred c
Q psy4347 701 G 701 (816)
Q Consensus 701 ~ 701 (816)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 4
No 69
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-45 Score=396.65 Aligned_cols=208 Identities=30% Similarity=0.457 Sum_probs=188.1
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+++|+ +..+++||||+|++||+++++|||||||||++++|+||.+|++|+|.+||.|+.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3599999999996 37899999999999999999999999999999999999999999999999999998765 789
Q ss_pred cEEEcCCCCcc-cccHHHHHhcCCC---CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 560 IAIVPQDPVLF-HDTILYNINYGDK---SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 560 i~~V~Q~~~LF-~~Ti~eNi~~~~~---~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
||+|||+..|| +.||+|||+||-. ... .+.+.++++++++.++-.+.| .+|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 99999999999 7799999999954 112 247899999999999988888 7999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhc-c-------CeEEEEcChhHHhhc
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHL-L-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~-d-------g~i~~~g~~~~L~~~ 701 (816)
||||+.+|++|+||||.||||..-...++..++++. .|.|.|+|||+.+..... | |+|...|+++|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999988753 389999999999877554 4 999999999999877
Q ss_pred Cc
Q psy4347 702 NS 703 (816)
Q Consensus 702 ~~ 703 (816)
+.
T Consensus 228 P~ 229 (352)
T COG3842 228 PA 229 (352)
T ss_pred cc
Confidence 64
No 70
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.6e-44 Score=372.63 Aligned_cols=213 Identities=39% Similarity=0.651 Sum_probs=192.5
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
.+.|+++|++++|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 56799999999997522247999999999999999999999999999999999999999999999999998877778889
Q ss_pred ccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 559 HIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
.++||+|++.+|..|++||+.++....+..++.+.++..++.+++..+|.|+++.+.+...+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987554455566666677788999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..| ++|+..
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~-d~i~~l 221 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERA-DQILVL 221 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhC-CEEEEe
Confidence 99999999999999999999999999887779999999999999774 566554
No 71
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.4e-44 Score=377.60 Aligned_cols=207 Identities=33% Similarity=0.505 Sum_probs=184.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.++++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+.+|.+|+|++||+|+.+++.+++.+.+
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3799999999964 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-CcccccHHHHHhcCCCC----------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 561 AIVPQDP-VLFHDTILYNINYGDKS----------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 561 ~~V~Q~~-~LF~~Ti~eNi~~~~~~----------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
|||||++ .-|.-||+|=+.+|+-. .+.+.+.+|++..++.++..+. -..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 9999996 45677999999998521 1233578889999998886542 257999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHH-Hhcc-------CeEEEEcChhHHh
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTI-KHLL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i-~~~d-------g~i~~~g~~~~L~ 699 (816)
.|||||+++|+||+||||||+||....-+|++.++++. +|+|+|+|.|++... +.|| |+|+..|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999875 369999999999766 4555 8888888888877
Q ss_pred hc
Q psy4347 700 RG 701 (816)
Q Consensus 700 ~~ 701 (816)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.9e-44 Score=372.67 Aligned_cols=204 Identities=34% Similarity=0.553 Sum_probs=176.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC-----CCCcceEEECCEeCCCCC--hH
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF-----EPNAGAIYIDGKNINDVD--LD 554 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~-----~p~~G~I~idG~di~~~~--~~ 554 (816)
|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 57999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhhccEEEcCCCCcccccHHHHHhcCCCC---C----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 555 SLRRHIAIVPQDPVLFHDTILYNINYGDKS---K----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~---~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
.+|+.++||||++.+|..|++||+.++... . .++++.++++..++.+.+.+.++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 778899999999999988999999875321 1 13467778888888776555432 4689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+.++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999999987655899999999999875 55 77777776554
No 73
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=388.23 Aligned_cols=215 Identities=28% Similarity=0.406 Sum_probs=178.7
Q ss_pred ccEEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC------
Q psy4347 480 ASIEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV------ 551 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~------ 551 (816)
..|+++||+|+|++.. +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999996411 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------ChHHHhhccEEEcCCC--CcccccHHHHHhcCCC--CCCHHHHHHHHHHcCChhHHHhCCCCcc-ccccC
Q psy4347 552 ----------DLDSLRRHIAIVPQDP--VLFHDTILYNINYGDK--SKSYEETIEAAKLADLHNSIIKWPNHYE-TQVGE 616 (816)
Q Consensus 552 ----------~~~~lr~~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~~~i~~a~~~a~l~~~I~~LP~Gyd-T~VGE 616 (816)
+...+|+.|+||+|+| .+|+.||+|||.++.. ..+.++..+.+ .+++..+ |++ ...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHc--CCChhHhcC
Confidence 3467899999999998 6999999999998732 23333322111 1223332 333 34566
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHH-hcc-------C
Q psy4347 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIK-HLL-------G 687 (816)
Q Consensus 617 ~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~-~~d-------g 687 (816)
.+.+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++. +++|+|+|||+++.+. .|| |
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999999999999999999999999999998763 5799999999999874 577 9
Q ss_pred eEEEEcChhHHhhc
Q psy4347 688 YKAHRKTSTNLVRG 701 (816)
Q Consensus 688 ~i~~~g~~~~L~~~ 701 (816)
+|++.|+++++.+.
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
No 74
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.5e-44 Score=368.10 Aligned_cols=200 Identities=32% Similarity=0.498 Sum_probs=173.7
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH---HHhh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD---SLRR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~---~lr~ 558 (816)
|+++||+++|++ ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPG-GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecC-CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 789999999964 124799999999999999999999999999999999999999999999999999776543 4788
Q ss_pred ccEEEcCCCCccc-ccHHHHHhcCCC------CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 559 HIAIVPQDPVLFH-DTILYNINYGDK------SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 559 ~i~~V~Q~~~LF~-~Ti~eNi~~~~~------~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
.++||||++.+|. .|++||+.++.. ...++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 599999987521 112456788888888877766655 5899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+...+++|+...
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLS 212 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999998864 47899999999999987666776553
No 75
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=371.05 Aligned_cols=204 Identities=27% Similarity=0.431 Sum_probs=179.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+|+|.+ . +||+||||+|++|++++||||||||||||+|+|+|+.+|++|+|.++|.+.++... +..|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 5999999999965 3 69999999999999999999999999999999999999999999999998876543 5789
Q ss_pred EEEcCCC---CcccccHHHHHhcCCCC----------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 561 AIVPQDP---VLFHDTILYNINYGDKS----------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 561 ~~V~Q~~---~LF~~Ti~eNi~~~~~~----------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
|||||.. +-|.-||+|=+.+|... .+.+++.+|++.+++.++..+ ++| +|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHH
Confidence 9999964 45788999999987431 134889999999999987643 344 69999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHh-cc------CeEEEEcChhHHh
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKH-LL------GYKAHRKTSTNLV 699 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~-~d------g~i~~~g~~~~L~ 699 (816)
|+.|||||+.+|++|+|||||+++|+.++..|.+.|+++++ |+|+++|+|+++.+.. +| ++++..|+.++..
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~ 226 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhcc
Confidence 99999999999999999999999999999999999998765 8999999999999977 55 7778888888776
Q ss_pred hc
Q psy4347 700 RG 701 (816)
Q Consensus 700 ~~ 701 (816)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 54
No 76
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=381.02 Aligned_cols=210 Identities=30% Similarity=0.480 Sum_probs=185.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642224699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCCC--cccccHHHHHhcCCCC--CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 561 AIVPQDPV--LFHDTILYNINYGDKS--KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 561 ~~V~Q~~~--LF~~Ti~eNi~~~~~~--~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
+||+|++. ++..||+|||.++... .+ .+++.++++..++.++..+.| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 5678999999987321 22 245778888889988776665 68999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+..|| |++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 799999999999998787 999999988887655
No 77
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-44 Score=371.74 Aligned_cols=208 Identities=31% Similarity=0.501 Sum_probs=188.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC-CCChHHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN-DVDLDSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~-~~~~~~lr~~ 559 (816)
.|+++|++|+|++ +.++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPG--RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCC--CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 4899999999987 368999999999999999999999999999999999999999999999999998 4788999999
Q ss_pred cEEEcCCC--CcccccHHHHHhcCCCC--CCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 560 IAIVPQDP--VLFHDTILYNINYGDKS--KSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 560 i~~V~Q~~--~LF~~Ti~eNi~~~~~~--~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
+|+|+|+| .+|..||.|.++||..+ .+. +.+.++++.++++++..+.| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999998 89999999999999542 233 44778889999999877777 7899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
|-+|+.+|++||||||||+||+...+.+.+.++++.+ ++|+|+|||++..+.. || |+++.+|+.+++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999765 4799999999999998 66 888888887776654
No 78
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-43 Score=390.24 Aligned_cols=207 Identities=28% Similarity=0.472 Sum_probs=184.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999943 36799999999999999999999999999999999999999999999999999887654 4789
Q ss_pred EEEcCCCCcc-cccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLF-HDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF-~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.+| +.||+|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999999 5699999998742 112 245778889999988888777 589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+.. || |+|++.|+.+++.+..
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999988644 7899999999997754 66 9999999999997764
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-43 Score=370.09 Aligned_cols=205 Identities=30% Similarity=0.494 Sum_probs=174.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC---hHHHhh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD---LDSLRR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~---~~~lr~ 558 (816)
|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 257999999999999999999999999999999999999999999999999998776 456788
Q ss_pred ccEEEcCCCCccc-ccHHHHHhcCCCC--------------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCCh
Q psy4347 559 HIAIVPQDPVLFH-DTILYNINYGDKS--------------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 559 ~i~~V~Q~~~LF~-~Ti~eNi~~~~~~--------------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG 623 (816)
.++||||++.+|. .|++||+.++... ...+++.++++..++.+.. .....+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCH
Confidence 9999999999886 6999999875321 1123455666666665433 334578999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEc
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRK 693 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g 693 (816)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. || |++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999874 37999999999999984 55 8888888
Q ss_pred ChhHHh
Q psy4347 694 TSTNLV 699 (816)
Q Consensus 694 ~~~~L~ 699 (816)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 777753
No 80
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=362.33 Aligned_cols=208 Identities=32% Similarity=0.477 Sum_probs=179.1
Q ss_pred cEEEEeeEEEeCCCccc---ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHH
Q psy4347 481 SIEFRDVNFSYIDKHTK---RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LDSL 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~-~~~l 556 (816)
.++++|+++.|+. .. ++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.+||.++.... .+..
T Consensus 3 ~l~v~nl~~~y~~--~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGG--GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecC--CcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 4899999999975 23 5999999999999999999999999999999999999999999999998776643 3578
Q ss_pred hhccEEEcCCCC--cc-cccHHHHHhcC----CCCCCHHHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 557 RRHIAIVPQDPV--LF-HDTILYNINYG----DKSKSYEETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 557 r~~i~~V~Q~~~--LF-~~Ti~eNi~~~----~~~~~~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
++.|.+|||||+ |- ..||++-|.=+ .-+..++++.++++.+|+. +|..+.| .+||||||||
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QR 149 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQR 149 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHH
Confidence 899999999986 33 34777766432 1223456799999999994 5667788 6899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEEecChhHHHhcc--------CeEEEEcChhHH
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN--KTTICIAHRLSTIKHLL--------GYKAHRKTSTNL 698 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~--~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L 698 (816)
|||||||.-+|++||||||||+||+...++|.+.+.++.++ -|.|+|||+++.+.+.+ |+|+|.+.-.++
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l 229 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhh
Confidence 99999999999999999999999999999999999887664 59999999999998865 888888888887
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
...
T Consensus 230 ~~~ 232 (252)
T COG1124 230 LSH 232 (252)
T ss_pred hcC
Confidence 766
No 81
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-43 Score=370.80 Aligned_cols=211 Identities=29% Similarity=0.456 Sum_probs=184.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC---CCcceEEECCEeCCCCChHHHh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE---PNAGAIYIDGKNINDVDLDSLR 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~---p~~G~I~idG~di~~~~~~~lr 557 (816)
.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999964 579999999999999999999999999999999999985 6999999999999988888889
Q ss_pred hccEEEcCCCCcccccHHHHHhcCCC--------CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 558 RHIAIVPQDPVLFHDTILYNINYGDK--------SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~~Ti~eNi~~~~~--------~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+.|+|+||++.+|..|++||+.++.. ...++++.++++..++.+++.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 99999999999999999999987621 1122356677788888766543 23456679999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+.+++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999998864 56 999999999888754
No 82
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.7e-43 Score=367.88 Aligned_cols=205 Identities=22% Similarity=0.395 Sum_probs=173.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH-hhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL-RRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l-r~~i 560 (816)
|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999964 579999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCCCC------------C----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCCh
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDKSK------------S----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~~~------------~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG 623 (816)
+||||++.+|.+ |++||+.++.... . .+++.++++..++ +........+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCChhhCCH
Confidence 999999999976 9999998763211 0 1223344444444 3334455578999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcC
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKT 694 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~ 694 (816)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |+|++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999998865 67999999999999976 55 88888888
Q ss_pred hhHHhh
Q psy4347 695 STNLVR 700 (816)
Q Consensus 695 ~~~L~~ 700 (816)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 887754
No 83
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-43 Score=375.88 Aligned_cols=205 Identities=27% Similarity=0.433 Sum_probs=181.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999964 35799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCC--CcccccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 561 AIVPQDP--VLFHDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 561 ~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
|||||++ .+|..|+.||+.++.. ..+ .+++.++++..++.++..+.| .+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6788999999998632 122 245777888889988777766 58999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+.+++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998874 47999999999999854 66 888888887653
No 84
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.4e-43 Score=364.40 Aligned_cols=204 Identities=23% Similarity=0.390 Sum_probs=172.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||++.|++ .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ...+++.++
T Consensus 1 l~~~~l~~~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKK-GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCC-CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 579999999964 126799999999999999999999999999999999999999999999999998764 366788999
Q ss_pred EEcCCCCcc-cccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||+|++.+| +.|++||+.++.. ..+ .+++.++++..++.+.... . ..+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-------R----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-------h----hhhCCHHHHHHHHHHHH
Confidence 999999999 6799999987421 111 2345666676776554332 2 25799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
|+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. || |++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998777999999999999876 55 777777776654
No 85
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-43 Score=357.49 Aligned_cols=207 Identities=29% Similarity=0.475 Sum_probs=183.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC---hHHHh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD---LDSLR 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~---~~~lr 557 (816)
.|+++||+..||+ ++.+|+||||+|++||+||||||||||||||++.|.|+.+|++|+|.++|.++..+. +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999986 688999999999999999999999999999999999999999999999999999887 56778
Q ss_pred hccEEEcCCCCccc-ccHHHHHhcCCCC--------------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCC
Q psy4347 558 RHIAIVPQDPVLFH-DTILYNINYGDKS--------------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~--------------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LS 622 (816)
++|||++|++.|-. .|+.+|+..|+.. .+.....+|++..|+.|... .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 89999999999995 5999999876432 12345678888889877643 3557999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEEecChhHHHhcc--------CeEEEE
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA--SRNKTTICIAHRLSTIKHLL--------GYKAHR 692 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~--~~~~T~i~IaHrls~i~~~d--------g~i~~~ 692 (816)
|||+|||+|||||+++|+|++-|||+|+|||.+.+.|++.|++. ..|.|+|+.-|.+..++..+ |+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 99999999999999999999999999999999999999999875 35799999999999998765 899998
Q ss_pred cChhHHhh
Q psy4347 693 KTSTNLVR 700 (816)
Q Consensus 693 g~~~~L~~ 700 (816)
|+.+||-+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 88887543
No 86
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=366.65 Aligned_cols=208 Identities=34% Similarity=0.516 Sum_probs=181.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 5799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 561 AIVPQDPVLFHDTILYNINYGDK--SKSYEETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 561 ~~V~Q~~~LF~~Ti~eNi~~~~~--~~~~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
+|+||++.+|..|++||+.++.. ....+++.+.++..++. +... ....+||||||||++|||||++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999997632 12234566677777764 3322 3446899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. || |++++.|+.+++....
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999998864 37999999999999875 56 8999989888887643
No 87
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=5e-43 Score=368.50 Aligned_cols=204 Identities=32% Similarity=0.484 Sum_probs=174.0
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHHhh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL---DSLRR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~---~~lr~ 558 (816)
|+++||+++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999962 3579999999999999999999999999999999999999999999999999987654 34688
Q ss_pred ccEEEcCCCCccc-ccHHHHHhcCCCC--------------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCCh
Q psy4347 559 HIAIVPQDPVLFH-DTILYNINYGDKS--------------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 559 ~i~~V~Q~~~LF~-~Ti~eNi~~~~~~--------------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG 623 (816)
.++||||++.+|. .|++||+.++... ...+++.++++..++.+++. ....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 9999999999885 6999999875321 11234566666666655443 34478999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEc
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRK 693 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g 693 (816)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. || |++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998864 37899999999999865 55 8888888
Q ss_pred ChhHH
Q psy4347 694 TSTNL 698 (816)
Q Consensus 694 ~~~~L 698 (816)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 87765
No 88
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-43 Score=387.12 Aligned_cols=210 Identities=31% Similarity=0.502 Sum_probs=181.4
Q ss_pred EEEEeeEEEeCCC-cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH---Hh
Q psy4347 482 IEFRDVNFSYIDK-HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS---LR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~---lr 557 (816)
|+++||+|+|+.+ .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999721 1357999999999999999999999999999999999999999999999999998877644 57
Q ss_pred hccEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 558 RHIAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
+.||||||++.+|. .|++||+.++.. ..+ .+++.++++..++.++..+.| .+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP-----------AQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 699999987521 122 245666777777766655444 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998743 7899999999999876 66 99999999999876
Q ss_pred cC
Q psy4347 701 GN 702 (816)
Q Consensus 701 ~~ 702 (816)
..
T Consensus 231 ~~ 232 (343)
T PRK11153 231 HP 232 (343)
T ss_pred CC
Confidence 53
No 89
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-43 Score=387.90 Aligned_cols=207 Identities=29% Similarity=0.460 Sum_probs=183.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .++.|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999964 579999999999999999999999999999999999999999999999999987664 36789
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.||. .|++|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 699999998732 111 356788889999987776666 689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |+|++.|+.+++.....
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 7999999999999855 56 99999999999877643
No 90
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-43 Score=369.55 Aligned_cols=212 Identities=30% Similarity=0.463 Sum_probs=182.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~~ 552 (816)
..|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.. .+
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 35999999999964 579999999999999999999999999999999999975 689999999999865 34
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCC--C-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDK--S-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
...+|+.|+||+|++.+|..|++||+.++.. . ...+++.++++..++.+++.. .......+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHH
Confidence 5677899999999999998899999987521 1 123456777788888654432 3345567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999865 66 99999999888
Q ss_pred Hhhc
Q psy4347 698 LVRG 701 (816)
Q Consensus 698 L~~~ 701 (816)
+.+.
T Consensus 235 ~~~~ 238 (253)
T PRK14242 235 IFTR 238 (253)
T ss_pred HHcC
Confidence 8654
No 91
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3e-43 Score=344.54 Aligned_cols=205 Identities=33% Similarity=0.515 Sum_probs=182.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|.+++|.|+|.. . ==.++++|++||+|||+||||||||||++|+.||..|.+|+|.|||+|....++ .++-++
T Consensus 2 l~L~~V~~~y~~--~---~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGH--L---PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVS 74 (231)
T ss_pred ccccceEEeeCc--c---eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChh
Confidence 568899999954 1 136899999999999999999999999999999999999999999999988766 367899
Q ss_pred EEcCCCCcc-cccHHHHHhcCC-CC-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLF-HDTILYNINYGD-KS-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~-~~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
++|||..|| +-||++||.+|. |. ...+.+..++..+|+.+|..+|| .+||||||||+|+||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 999999999 569999999994 32 23467889999999999999999 6899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc--------CeEEEEcChhHHhhcCch
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL--------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L~~~~~~ 704 (816)
|+|+-|||+||||+|+|||.-..+....+.++. ++.|+++|||.++.++..+ |||...|.-+++..+.+.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 999999999999999999999999999887754 4689999999999987754 999999999999887653
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-43 Score=367.42 Aligned_cols=204 Identities=29% Similarity=0.466 Sum_probs=175.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999964 579999999999999999999999999999999999999999999999999876543 367899
Q ss_pred EEcCCCCccc-ccHHHHHhcCCCC--C----C----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDKS--K----S----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~~--~----~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
||+|++.+|. .|++||+.++... . + .+++.++++..++.++..+.| .+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----------AQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 9999999995 6999999876321 1 1 234566677777766554443 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. || |++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988743 7899999999998765 55 89999999888765
Q ss_pred c
Q psy4347 701 G 701 (816)
Q Consensus 701 ~ 701 (816)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
No 93
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.2e-43 Score=387.54 Aligned_cols=207 Identities=29% Similarity=0.436 Sum_probs=183.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999964 5699999999999999999999999999999999999999999999999999877653 6789
Q ss_pred EEEcCCCCcc-cccHHHHHhcCCCC--C----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLF-HDTILYNINYGDKS--K----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF-~~Ti~eNi~~~~~~--~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.|| +.|++|||.|+... . ..+++.++++..++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999999 57999999987321 1 1356788888888887776665 689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. || |+|++.|+++++.+...
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988643 7899999999998755 66 99999999999987643
No 94
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-43 Score=364.75 Aligned_cols=208 Identities=31% Similarity=0.487 Sum_probs=178.0
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH---HHh
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD---SLR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~---~lr 557 (816)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996410 12799999999999999999999999999999999999999999999999999877653 357
Q ss_pred hccEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 558 RHIAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
+.|+||||++.+|. .|++||+.++.. ..+ .+++.++++..++.+.+.+.| .+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 89999999999996 699999987521 111 345677777778776655544 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |++++.|+.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988642 7899999999999865 66 88888888887754
No 95
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.4e-42 Score=366.56 Aligned_cols=210 Identities=32% Similarity=0.503 Sum_probs=180.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-----cceEEECCEeCCCC--ChH
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-----AGAIYIDGKNINDV--DLD 554 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-----~G~I~idG~di~~~--~~~ 554 (816)
|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999964 46999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhhccEEEcCCCCcccccHHHHHhcCCC--C-CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 555 SLRRHIAIVPQDPVLFHDTILYNINYGDK--S-KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~-~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
.+|+.|+||||++.+|..|++||+.++.. . .+ .+++.++++..++.+++.. .......+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHH
Confidence 67889999999999999999999987521 1 11 2456777788888744421 123344789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987767899999999998865 66 8999999888876
Q ss_pred hc
Q psy4347 700 RG 701 (816)
Q Consensus 700 ~~ 701 (816)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 54
No 96
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=368.21 Aligned_cols=213 Identities=32% Similarity=0.461 Sum_probs=181.6
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCC--CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIND--VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~--~~ 552 (816)
..|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 35999999999964 5799999999999999999999999999999999999997 49999999999864 34
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCCC---C----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDKS---K----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~---~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
...+|+.|+||+|++.+|..|++|||.++... . .++++.++++..++.+.+ ++.+++ ...+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHH
Confidence 46778999999999999999999999876311 1 134566777777775433 234444 456899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999865 56 99999999988
Q ss_pred HhhcC
Q psy4347 698 LVRGN 702 (816)
Q Consensus 698 L~~~~ 702 (816)
+.+..
T Consensus 236 ~~~~~ 240 (254)
T PRK14273 236 LFFNP 240 (254)
T ss_pred HHhCC
Confidence 87543
No 97
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-42 Score=355.97 Aligned_cols=188 Identities=40% Similarity=0.633 Sum_probs=168.6
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
.+.|+++|++++|++ ...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAP-DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCC-CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 356999999999964 2247999999999999999999999999999999999999999999999999998888888899
Q ss_pred ccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 559 HIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
.|+||||++.+|++|++||+.+... .+.+++.++++ +......|||||+||++|||||+.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999987643 34555555443 2355689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..+|
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d 191 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYD 191 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCC
Confidence 999999999999999999999999999877899999999999998775
No 98
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=374.27 Aligned_cols=209 Identities=29% Similarity=0.467 Sum_probs=186.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+|+|++ ..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 4899999999964 235799999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEcCCC--CcccccHHHHHhcCCCC--CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 561 AIVPQDP--VLFHDTILYNINYGDKS--KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 561 ~~V~Q~~--~LF~~Ti~eNi~~~~~~--~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
+||||++ .+++.|++|||.++... .+ .+++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 46678999999886321 12 245778888889988887777 58999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..|| |++++.|+.+++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998754 789999999999998887 999999998888764
No 99
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.2e-42 Score=360.53 Aligned_cols=205 Identities=24% Similarity=0.410 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH-hhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL-RRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l-r~~i 560 (816)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 579999999964 579999999999999999999999999999999999999999999999999988776554 6789
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCCCCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDKSKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
+||||++.+|.. |++||+.++..... .+++.++++.. ..++ ........+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 999999999975 99999998643221 11222222222 1122 233344568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 636 LKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. || |++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999998865 57899999999998866 55 7777777766654
No 100
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-42 Score=354.92 Aligned_cols=196 Identities=31% Similarity=0.484 Sum_probs=176.0
Q ss_pred EEEEeeEEEeCCCcc--cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 482 IEFRDVNFSYIDKHT--KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
|+++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975210 3799999999999999999999999999999999999999999999999 5
Q ss_pred cEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q psy4347 560 IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p 639 (816)
|+||+|++.+|+.|++||+.++.. .+++++.++++.+++.+++..+|.|++|.+++.+.+||||||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999743 3456777888899999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHh-cCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 640 PILVFDEATSSLDSITENNILSS-LKTA-SRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 640 ~iLiLDE~Ts~LD~~te~~i~~~-l~~~-~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+++||||||++||+.+.+.+.+. +++. .+++|+|+|||+++.+..+ ++++..
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~-d~i~~l 200 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHA-DQIVVL 200 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhC-CEEEEE
Confidence 99999999999999999999874 5554 3469999999999999984 566544
No 101
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=9.9e-43 Score=359.44 Aligned_cols=198 Identities=33% Similarity=0.474 Sum_probs=173.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH---HHhh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD---SLRR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~---~lr~ 558 (816)
|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999953 35799999999999999999999999999999999999999999999999999877643 4688
Q ss_pred ccEEEcCCCCccc-ccHHHHHhcCC------CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 559 HIAIVPQDPVLFH-DTILYNINYGD------KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 559 ~i~~V~Q~~~LF~-~Ti~eNi~~~~------~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
.++||+|++.+|. .|++||+.++. +...++++.++++..++.+.+.+.| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999995 69999998752 1112356778888888877766655 5899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+....++++..
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEe
Confidence 999999999999999999999999999999999864 4799999999999998866676654
No 102
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=375.49 Aligned_cols=211 Identities=32% Similarity=0.531 Sum_probs=178.6
Q ss_pred EEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC--hHHHh
Q psy4347 482 IEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD--LDSLR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~--~~~lr 557 (816)
|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999996411 147999999999999999999999999999999999999999999999999998754 45788
Q ss_pred hccEEEcCCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 558 RHIAIVPQDP--VLFHDTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 558 ~~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+.||||||+| .+|+.|++|||.++.. ..+. +++.++++..++. +++........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999997 5788999999998632 2233 3456677777774 11223344578999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHH-hcc-------CeEEEEcChhHHh
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIK-HLL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~-~~d-------g~i~~~g~~~~L~ 699 (816)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .|| |++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998743 799999999999985 477 9999999988876
Q ss_pred hc
Q psy4347 700 RG 701 (816)
Q Consensus 700 ~~ 701 (816)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 54
No 103
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1e-42 Score=360.40 Aligned_cols=199 Identities=31% Similarity=0.436 Sum_probs=167.9
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH----HH
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD----SL 556 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~----~l 556 (816)
|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996411 15799999999999999999999999999999999999999999999999999877643 24
Q ss_pred hhccEEEcCCCCcccc-cHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 557 RRHIAIVPQDPVLFHD-TILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~~-Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
++.++||+|++.+|.. |++||+.++.. .. .++++.++++..++.+...+.| .+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP-----------SELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh-----------hhcCHHHHHHH
Confidence 6789999999999975 99999987532 11 1245666777777765544433 68999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEEE
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..| ++++..
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~-d~v~~l 213 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYA-DRIIEL 213 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhh-cEEEEe
Confidence 999999999999999999999999999999999998754 79999999999998844 566544
No 104
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-43 Score=360.98 Aligned_cols=195 Identities=33% Similarity=0.497 Sum_probs=167.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 578999999964 579999999999999999999999999999999999999999999999999976543 467899
Q ss_pred EEcCCCCccc-ccHHHHHhcCCCC--C----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDKS--K----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~~--~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||||++.+|. .|++||+.++... . ..+++.++++..++.+++.+.| .+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999885 6999999875321 1 1245667777778776665554 6899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+...+++|+..
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 204 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVM 204 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEE
Confidence 999999999999999999999999999998864 3799999999999987755455443
No 105
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=374.45 Aligned_cols=209 Identities=27% Similarity=0.460 Sum_probs=175.7
Q ss_pred EEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC----ChHH
Q psy4347 482 IEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV----DLDS 555 (816)
Q Consensus 482 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~----~~~~ 555 (816)
|+++||+|+|+++. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996411 14699999999999999999999999999999999999999999999999999753 3457
Q ss_pred HhhccEEEcCCC--CcccccHHHHHhcCCC--CCCHH----HHHHHHHHcCChhHHHhCCCCccc-cccCCCCCCChhHH
Q psy4347 556 LRRHIAIVPQDP--VLFHDTILYNINYGDK--SKSYE----ETIEAAKLADLHNSIIKWPNHYET-QVGERGLKLSGGEK 626 (816)
Q Consensus 556 lr~~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~~----~i~~a~~~a~l~~~I~~LP~GydT-~VGE~G~~LSGGqr 626 (816)
+|+.||||||+| .+|..|+.|||.++.. ..+.+ ++.++++..++ ++ .......+||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF-----------SRDVMSQSPFQMSGGQM 151 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC-----------ChhhhhCCcccCCHHHH
Confidence 899999999997 6888899999998632 12332 33344444444 32 22345579999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHH-hcc-------CeEEEEcChh
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIK-HLL-------GYKAHRKTST 696 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~-~~d-------g~i~~~g~~~ 696 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .|| |+|++.|+.+
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999874 4799999999999985 466 9999999988
Q ss_pred HHhhc
Q psy4347 697 NLVRG 701 (816)
Q Consensus 697 ~L~~~ 701 (816)
++.+.
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88764
No 106
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.5e-43 Score=357.65 Aligned_cols=195 Identities=30% Similarity=0.471 Sum_probs=170.4
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEE
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~ 562 (816)
+++||+++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ...++.|+|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 46899999964 2679999999999999999999999999999999999999999999999998854 456788999
Q ss_pred EcCCC--CcccccHHHHHhcCCCC--CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 563 VPQDP--VLFHDTILYNINYGDKS--KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 563 V~Q~~--~LF~~Ti~eNi~~~~~~--~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
|+|++ .+|..|++||+.++.+. ...+++.++++..++.++..+.| ..||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99997 46788999999986432 23457888899999988766666 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
|++|||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+....++|+...
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 200 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLA 200 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999886 457999999999999987555666553
No 107
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=373.85 Aligned_cols=209 Identities=24% Similarity=0.454 Sum_probs=177.9
Q ss_pred EEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC----CChHH
Q psy4347 482 IEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----VDLDS 555 (816)
Q Consensus 482 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~----~~~~~ 555 (816)
|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997411 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhccEEEcCCC--CcccccHHHHHhcCCCC--CCH----HHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCChhHH
Q psy4347 556 LRRHIAIVPQDP--VLFHDTILYNINYGDKS--KSY----EETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 556 lr~~i~~V~Q~~--~LF~~Ti~eNi~~~~~~--~~~----~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
+|+.||||+|+| .+|..|+.||+.|+... .+. +++.++++..++. ++..+ ...+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEK-----------SPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccC-----------CcccCCHHHH
Confidence 899999999988 79999999999987421 222 3455666677774 33333 3368999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHH-hcc-------CeEEEEcChhH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIK-HLL-------GYKAHRKTSTN 697 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~-~~d-------g~i~~~g~~~~ 697 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .|| |+|++.|+.++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998864 4799999999999885 477 99999999998
Q ss_pred Hhhc
Q psy4347 698 LVRG 701 (816)
Q Consensus 698 L~~~ 701 (816)
+...
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8653
No 108
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-42 Score=371.95 Aligned_cols=212 Identities=28% Similarity=0.430 Sum_probs=185.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+|+|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999742234699999999999999999999999999999999999999999999999999887777889999
Q ss_pred EEEcCCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 561 AIVPQDP--VLFHDTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 561 ~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
+||+|++ .+++.|+.|||.++.. ..+. +++.++++..++.++..+.| ..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP-----------ARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4668899999987522 2222 34567778888877655543 68999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
|||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..|| |++++.|+++++....+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999999999999999999999999988754 799999999999998888 99999999999876543
No 109
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-39 Score=347.63 Aligned_cols=450 Identities=21% Similarity=0.251 Sum_probs=311.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4347 198 LRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYK 277 (816)
Q Consensus 198 lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~ 277 (816)
+.......+++.+.+++|.++.++++.-|+.-+++-.++.++.+++.|.+.+..-+.. +..+....+.. +.+..-+.+
T Consensus 67 is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~-lp~~~qa~il~-l~s~aYLay 144 (546)
T COG4615 67 ISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSR-LPELVQAIILT-LGSAAYLAY 144 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhh-hHHHHHHHHHH-HHHHHHHHH
Confidence 3344566689999999999999999999999999999999999999988877633322 22233322211 122233456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHH--HHHHHHHHHHHHHHH
Q psy4347 278 CGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKF--EADRYEGVLKKYEQA 355 (816)
Q Consensus 278 ~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~--~~~r~~~~~~~~~~~ 355 (816)
.|+++.+++++.+.+.++...+...+..+.....++.++++.+..+..+.|.+.++....-.+ ..+.|....+.+++.
T Consensus 145 LSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~ 224 (546)
T COG4615 145 LSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH 224 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh
Confidence 788888777776666555554444444444455567778888899999999999987643222 223333322332221
Q ss_pred HHHhcchhhhhhhhhhHHHHHHHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q psy4347 356 ALKTSTSLATLNFGKAQYEQAALKTSTSL-ATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPL 434 (816)
Q Consensus 356 ~~k~~~~~~~~~~~~a~~~~~~l~~~~~~-~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l~~pl 434 (816)
.... ..+. ...++.+ +++.....+++|+.. .-+.-+.....++...+..+-.|+
T Consensus 225 ~~~~---------------------n~f~~la~~~~n-i~l~~lIGlvf~lal---~~~w~st~~a~tivlvlLflr~pL 279 (546)
T COG4615 225 IIRA---------------------NTFHLLAVNWSN-IMLLGLIGLVFWLAL---SLGWASTNVAATIVLVLLFLRTPL 279 (546)
T ss_pred hhhh---------------------hHHHHHHHHHHH-HHHHHHHHHHHHHHH---hhccchhhHHHHHHHHHHHHhhHH
Confidence 1111 0000 0111111 111111122223221 223333444444555566677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEE
Q psy4347 435 GFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVA 514 (816)
Q Consensus 435 ~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~va 514 (816)
.++...+..+-+|.++.++|.++-.. |+..+-+.+.+. +.-..||++||.|+|++ ..--+.-||++|++||.|-
T Consensus 280 ~s~vgilP~l~~AqvA~~kiakle~~-~~~a~~~~~q~~---p~~~~lelrnvrfay~~--~~FhvgPiNl~ikrGelvF 353 (546)
T COG4615 280 LSAVGILPTLLTAQVAFNKIAKLELA-PYKADFPRPQAF---PDWKTLELRNVRFAYQD--NAFHVGPINLTIKRGELVF 353 (546)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhcC-CccccCCCCCcC---CcccceeeeeeeeccCc--ccceecceeeEEecCcEEE
Confidence 99999999999999999999886543 332222221111 12457999999999976 3355788999999999999
Q ss_pred EeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCC-CCHHHHHHH
Q psy4347 515 IVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKS-KSYEETIEA 593 (816)
Q Consensus 515 ivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~-~~~~~i~~a 593 (816)
|+|.|||||||+++||.|+|.|++|+|++||.++..-+++++|+-++-|+-|.+||..++ |.+. ++.+.+..-
T Consensus 354 liG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~ 427 (546)
T COG4615 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKW 427 (546)
T ss_pred EECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 3233 555555554
Q ss_pred HHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCE
Q psy4347 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA--SRNKT 671 (816)
Q Consensus 594 ~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~--~~~~T 671 (816)
++...+..-. ++-+|==+ -..||-|||.|+|+--|++-+.||++|||=-+--||.=.+...+.+--. ..|||
T Consensus 428 LqrLel~~kt-sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT 501 (546)
T COG4615 428 LQRLELAHKT-SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501 (546)
T ss_pred HHHHHHhhhh-cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence 4433332211 11111111 1579999999999999999999999999999999999999988875432 34999
Q ss_pred EEEEecChhHHHhcc-------CeEEEE
Q psy4347 672 TICIAHRLSTIKHLL-------GYKAHR 692 (816)
Q Consensus 672 ~i~IaHrls~i~~~d-------g~i~~~ 692 (816)
++.|||+-..-.+|| |+++|.
T Consensus 502 I~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 502 IFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred EEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999 999885
No 110
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=362.89 Aligned_cols=199 Identities=28% Similarity=0.431 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH---H
Q psy4347 481 SIEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS---L 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~---l 556 (816)
-|+++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996421 157999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-hccEEEcCCCCcccc-cHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 557 R-RHIAIVPQDPVLFHD-TILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 557 r-~~i~~V~Q~~~LF~~-Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
| +.|+||||++.+|.. |++||+.++.. .. ..+++.++++..++.+...+. ..+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-----------PSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHH
Confidence 3 679999999999965 99999987311 11 124566777777775554433 36899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEE
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+..+| +++.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~-~~~~ 217 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS-RQLE 217 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhC-EEEE
Confidence 999999999999999999999999999999999999874 4799999999999999887 4433
No 111
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-42 Score=366.49 Aligned_cols=213 Identities=30% Similarity=0.461 Sum_probs=183.0
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--C
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--V 551 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~ 551 (816)
.+.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999964 479999999999999999999999999999999999997 589999999999863 4
Q ss_pred ChHHHhhccEEEcCCCCcccccHHHHHhcCCC---CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDK---SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 552 ~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~---~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
+...+|+.|+||||++.+|..|++||+.++.. ..+ ++++.++++..++.+.+. ..+.+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 55678999999999999999999999987532 122 245677778887754332 2345566789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChh
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTST 696 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~ 696 (816)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|+|||++..+.. +| |++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 55 8999999888
Q ss_pred HHhhc
Q psy4347 697 NLVRG 701 (816)
Q Consensus 697 ~L~~~ 701 (816)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 87654
No 112
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.5e-42 Score=357.38 Aligned_cols=198 Identities=35% Similarity=0.555 Sum_probs=170.3
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEE
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~ 562 (816)
+++||+++|++ .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~-~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPD-GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCC-CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 47899999964 12579999999999999999999999999999999999999999999999999988877888999999
Q ss_pred EcCCCC--cccccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 563 VPQDPV--LFHDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 563 V~Q~~~--LF~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
+||++. ++..|++||+.++.. ..+ .+++.++++..++.+++.+.| .+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP-----------FTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 999983 668899999987532 111 234566777777766554444 6899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+....++|+..
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 207 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVL 207 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999998875 4799999999999998865677654
No 113
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.3e-42 Score=385.34 Aligned_cols=196 Identities=36% Similarity=0.501 Sum_probs=176.0
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH----hhccEEEcCCCCccc
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL----RRHIAIVPQDPVLFH 571 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l----r~~i~~V~Q~~~LF~ 571 (816)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.|+..++...+ |+.|+||||++.||.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3679999999999999999999999999999999999999999999999999999998887 789999999999996
Q ss_pred -ccHHHHHhcCCCC--C----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q psy4347 572 -DTILYNINYGDKS--K----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644 (816)
Q Consensus 572 -~Ti~eNi~~~~~~--~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiL 644 (816)
.||+|||.++... . ..+++.++++.+++.+++.+.| .+||||||||++|||||+.+|+||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5999999986321 1 2356788889999988777666 58999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 645 DEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 645 DE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
|||||+||+.+.+.+++.+.++. .++|+|+|||+++.+.. || |+|++.|+.+++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999999998864 37999999999998654 66 9999999999998764
No 114
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=371.87 Aligned_cols=208 Identities=27% Similarity=0.439 Sum_probs=179.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC--CCChHHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN--DVDLDSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~--~~~~~~lr~ 558 (816)
-|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 467999999999999999999999999999999999999999999999999984 344567889
Q ss_pred ccEEEcCCC--CcccccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 559 HIAIVPQDP--VLFHDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 559 ~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
.||||||++ .+|+.|++||+.++.. ..+ .+.+.++++..++.++.. ....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 999999998 5788999999987522 122 244666777778866543 334789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHH-hcc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIK-HLL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~-~~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .|| |++++.|+.+++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988753 799999999999997 466 99999999988866
Q ss_pred c
Q psy4347 701 G 701 (816)
Q Consensus 701 ~ 701 (816)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 115
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.8e-42 Score=356.19 Aligned_cols=194 Identities=24% Similarity=0.343 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999954 5799999999999999999999999999999999999999999999999988764 56788999
Q ss_pred EEcCCCCcc-cccHHHHHhcCC--CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 562 IVPQDPVLF-HDTILYNINYGD--KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~--~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
||||++.+| +.|++||+.++. ...+++++.++++..++.+...+.| ..||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV-----------KGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH-----------hhCCHHHHHHHHHHHHHhcC
Confidence 999999888 579999998753 1235667888889988877655433 68999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEE
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+....++++.
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~ 198 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGI 198 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 99999999999999999999999998864 479999999999999764434433
No 116
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=382.74 Aligned_cols=205 Identities=26% Similarity=0.441 Sum_probs=181.7
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...+. .++.|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 899999999964 579999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcCCCCccc-ccHHHHHhcCCCC------CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDKS------KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~~------~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
||||++.+|. .|++|||.|+... .+ .+++.++++..++.++..+.| .+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 9999999995 6999999987321 12 346777888888887776666 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |+|++.|+.+++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988754 7899999999998766 56 99999999999987
Q ss_pred cC
Q psy4347 701 GN 702 (816)
Q Consensus 701 ~~ 702 (816)
..
T Consensus 227 ~p 228 (353)
T PRK10851 227 EP 228 (353)
T ss_pred Cc
Confidence 64
No 117
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-42 Score=356.78 Aligned_cols=195 Identities=26% Similarity=0.410 Sum_probs=168.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|.|++ .++|+|+||+|++| ++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999964 47999999999999 99999999999999999999999999999999999998766 67889999
Q ss_pred EEcCCCCcccc-cHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFHD-TILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||+|++.+|.. |++||+.+... .. ..+++.++++..++.++....| .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI-----------GSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999986311 11 1345677788888876544332 5799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+....++++..
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l 202 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVL 202 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999877799999999999997654455443
No 118
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.7e-42 Score=387.13 Aligned_cols=207 Identities=25% Similarity=0.422 Sum_probs=185.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...+++.|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999964 6799999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEEcCCCCc-ccccHHHHHhcCCC----------CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 561 AIVPQDPVL-FHDTILYNINYGDK----------SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 561 ~~V~Q~~~L-F~~Ti~eNi~~~~~----------~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
|||+|++.+ |+.|++||+.++.. ..+.+.+.++++..++.++..+.+ .+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----------~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----------TSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHH
Confidence 999999988 47899999988742 112356788889999987765433 68999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
+|||||+++|++|||||||++||+.+...+++.|+++. +++|+|+++|+++.+.. || |++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 47899999999999954 66 99999999999876
Q ss_pred c
Q psy4347 701 G 701 (816)
Q Consensus 701 ~ 701 (816)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 119
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.7e-42 Score=355.91 Aligned_cols=198 Identities=33% Similarity=0.470 Sum_probs=170.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHHhh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL---DSLRR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~---~~lr~ 558 (816)
|+++||+++|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 578999999964 3579999999999999999999999999999999999999999999999999987754 34788
Q ss_pred ccEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 559 HIAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 559 ~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
.++||+|++.+|. .|++||+.++.. ..+ .+++.++++..++.+...+.| .+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence 9999999999996 599999987521 111 245667777778876655544 5899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+....++|+..
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999874 5799999999999998755666554
No 120
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-42 Score=363.58 Aligned_cols=209 Identities=33% Similarity=0.495 Sum_probs=177.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|+|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGG--GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCC--cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 478999999964 257999999999999999999999999999999999999999999999999998888878889999
Q ss_pred EEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||||++.+|. .|++||+.++.. ..+ .+++.++++..++.+ +........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999995 699999987521 111 234556666666643 012233457899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
|+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998743 7999999999998765 55 899988888887654
No 121
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-42 Score=370.04 Aligned_cols=207 Identities=29% Similarity=0.479 Sum_probs=182.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999964 356999999999999999999999999999999999999999999999999998777778899999
Q ss_pred EEcCCC--CcccccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 562 IVPQDP--VLFHDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 562 ~V~Q~~--~LF~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
||+|++ .+|+.|+.||+.++.. ..+ ++.+.++++..++.+++.+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999997 4778899999987532 122 234677888888887766655 589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHH-hcc-------CeEEEEcChhHHhhc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIK-HLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~-~~d-------g~i~~~g~~~~L~~~ 701 (816)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .|| |++++.|+.+++.+.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988653 799999999999985 466 999999999988764
No 122
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-42 Score=367.42 Aligned_cols=213 Identities=29% Similarity=0.463 Sum_probs=182.8
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCC--C
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIND--V 551 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~--~ 551 (816)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999964 5799999999999999999999999999999999999985 89999999999875 3
Q ss_pred ChHHHhhccEEEcCCCCcccccHHHHHhcCCC-------CCC-HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCCh
Q psy4347 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDK-------SKS-YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 552 ~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~-------~~~-~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG 623 (816)
+...+|+.|+||+|++.+|..|+.||+.++.. ... .+++.++++..++.+++. +.......+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 45678899999999999998899999987521 111 345677788888865442 223455678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcCh
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTS 695 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~ 695 (816)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998778899999999999965 45 999999998
Q ss_pred hHHhhc
Q psy4347 696 TNLVRG 701 (816)
Q Consensus 696 ~~L~~~ 701 (816)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 888653
No 123
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=365.02 Aligned_cols=211 Identities=28% Similarity=0.404 Sum_probs=180.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCC--CCCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIN--DVDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~--~~~~ 553 (816)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 5799999999999999999999999999999999999997 4999999999997 4556
Q ss_pred HHHhhccEEEcCCCCcccc-cHHHHHhcCCC--C------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 554 DSLRRHIAIVPQDPVLFHD-TILYNINYGDK--S------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~-Ti~eNi~~~~~--~------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
..+|+.++||||++.+|.. |+.||+.++.. . ..++++.++++..++.+++.. .......+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 6788899999999999965 99999987521 1 112346667777777554422 234456789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChh
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTST 696 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~ 696 (816)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+.+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777999999999999865 66 9999999988
Q ss_pred HHhhc
Q psy4347 697 NLVRG 701 (816)
Q Consensus 697 ~L~~~ 701 (816)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 88654
No 124
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-42 Score=363.87 Aligned_cols=211 Identities=30% Similarity=0.438 Sum_probs=181.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCCCChHH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNINDVDLDS 555 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~~~~~~ 555 (816)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999964 5799999999999999999999999999999999999984 7999999999998888888
Q ss_pred HhhccEEEcCCCCcc-cccHHHHHhcCCC--C--CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 556 LRRHIAIVPQDPVLF-HDTILYNINYGDK--S--KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 556 lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~--~--~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
+|+.|+||||++.+| +.|++||+.++.. . .. .+++.++++..++.+.+.. .+| ....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLD----APAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhc----CCcccCCHHHH
Confidence 899999999999866 6799999987531 0 11 2456777888887654321 223 33467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+.+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999864 66 999999998888
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 654
No 125
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.6e-42 Score=357.33 Aligned_cols=199 Identities=24% Similarity=0.380 Sum_probs=168.2
Q ss_pred EEEEeeEEEeCCCcc-cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 482 IEFRDVNFSYIDKHT-KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
|+++||+++|++... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999975111 279999999999999999999999999999999999999999999999999975 456778999
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
+||||++.+|.. |++||+.+... ..+ .+++.++++..++.+...+ ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999975 99999986421 111 3456667777777655443 44789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+....++++..
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l 209 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVL 209 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999998864 4799999999999987755455443
No 126
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-42 Score=372.93 Aligned_cols=210 Identities=30% Similarity=0.485 Sum_probs=177.3
Q ss_pred EEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC----CChHH
Q psy4347 482 IEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----VDLDS 555 (816)
Q Consensus 482 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~----~~~~~ 555 (816)
|+++||+|+|++.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996411 1469999999999999999999999999999999999999999999999999864 34567
Q ss_pred HhhccEEEcCCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 556 LRRHIAIVPQDP--VLFHDTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 556 lr~~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
+|+.||||||+| .+|+.|++|||.++.. ..+. +.+.++++..++++.+. ......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 888999999997 6888899999998632 1222 34566677777753221 2234689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. || |+|++.|+.++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988743 7899999999999865 66 99999999888
Q ss_pred Hhhc
Q psy4347 698 LVRG 701 (816)
Q Consensus 698 L~~~ 701 (816)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 7654
No 127
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.4e-42 Score=383.01 Aligned_cols=208 Identities=31% Similarity=0.510 Sum_probs=185.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999964 5799999999999999999999999999999999999999999999999999876654 578
Q ss_pred cEEEcCCCCcc-cccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDPVLF-HDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~~LF-~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
||||||++.|| +.||+|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||+|||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHH
Confidence 99999999999 5599999998742 112 346778889999998888887 68999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
|||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+.. +| |+|++.|+.+++....
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988653 7999999999998754 66 9999999999988764
Q ss_pred c
Q psy4347 703 S 703 (816)
Q Consensus 703 ~ 703 (816)
.
T Consensus 237 ~ 237 (375)
T PRK09452 237 K 237 (375)
T ss_pred c
Confidence 3
No 128
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-42 Score=368.66 Aligned_cols=209 Identities=33% Similarity=0.489 Sum_probs=181.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.|
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 5899999999963 246799999999999999999999999999999999999999999999999999887777889999
Q ss_pred EEEcCCC--CcccccHHHHHhcCCC--CCCHH----HHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 561 AIVPQDP--VLFHDTILYNINYGDK--SKSYE----ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 561 ~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~~----~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
+||||++ .++..|++|||.++.. ..+.+ .+.++++..++.++..+.| .+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4557899999987521 12222 3566777888877766555 68999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..|| |++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998653 489999999999998777 888888888777653
No 129
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.7e-42 Score=364.39 Aligned_cols=207 Identities=30% Similarity=0.491 Sum_probs=178.0
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC---------
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD--------- 552 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~--------- 552 (816)
|+++||+|.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999964 57999999999999999999999999999999999999999999999999987553
Q ss_pred ----hHHHhhccEEEcCCCCcc-cccHHHHHhcCCC---CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCC
Q psy4347 553 ----LDSLRRHIAIVPQDPVLF-HDTILYNINYGDK---SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLK 620 (816)
Q Consensus 553 ----~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~---~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~ 620 (816)
...+|+.++||+|++.+| ..|+.||+.++.. .. .++++.++++..++.+.+.+.| .+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP-----------AQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh-----------hh
Confidence 246788999999999998 4799999987521 11 1244666677777766555444 68
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEE
Q psy4347 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKA 690 (816)
Q Consensus 621 LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~ 690 (816)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||++..+.. +| |+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988643 7899999999999865 66 9999
Q ss_pred EEcChhHHhhcC
Q psy4347 691 HRKTSTNLVRGN 702 (816)
Q Consensus 691 ~~g~~~~L~~~~ 702 (816)
+.|+++++.+..
T Consensus 227 ~~g~~~~~~~~~ 238 (252)
T TIGR03005 227 EQGKPDEIFRQP 238 (252)
T ss_pred EeCCHHHHhcCC
Confidence 999999887553
No 130
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.9e-41 Score=365.03 Aligned_cols=227 Identities=27% Similarity=0.407 Sum_probs=194.3
Q ss_pred HHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh
Q psy4347 452 QTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY 531 (816)
Q Consensus 452 ~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~ 531 (816)
+.+.+++..+++..+... . ....+.|+++||++. . +++|+|+||+|++||++||+|+||||||||+++|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~---~--~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 15 EGFGELLEKAKQENNDRK---H--SSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred HHHHHHHhcccccccccc---c--CCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345666766555322211 1 123457999999985 2 46999999999999999999999999999999999
Q ss_pred cCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCcc
Q psy4347 532 RFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611 (816)
Q Consensus 532 gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~Gyd 611 (816)
|+++|++|+|.+|| .|+||+|++.+|+.|++||+.++.. ....++.++++..++.+.+..+|.+++
T Consensus 85 Gl~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~ 150 (282)
T cd03291 85 GELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDN 150 (282)
T ss_pred CCCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhcccccc
Confidence 99999999999998 2999999999999999999998643 234456677788899999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCEEEEEecChhHHHhcc----
Q psy4347 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL-KTASRNKTTICIAHRLSTIKHLL---- 686 (816)
Q Consensus 612 T~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~i~IaHrls~i~~~d---- 686 (816)
|.+++.+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+ +++.++.|+|+|||++..+..||
T Consensus 151 ~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~ 230 (282)
T cd03291 151 TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230 (282)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999998754 56666899999999999998888
Q ss_pred ---CeEEEEcChhHHhhcC
Q psy4347 687 ---GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 687 ---g~i~~~g~~~~L~~~~ 702 (816)
|++++.|+++++.+..
T Consensus 231 l~~G~i~~~g~~~~~~~~~ 249 (282)
T cd03291 231 LHEGSSYFYGTFSELQSLR 249 (282)
T ss_pred EECCEEEEECCHHHHHhcc
Confidence 9999999998887543
No 131
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.8e-42 Score=382.10 Aligned_cols=208 Identities=27% Similarity=0.443 Sum_probs=184.5
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCc--ceEEECCEeCCCCChHHH
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA--GAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~--G~I~idG~di~~~~~~~l 556 (816)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 467999999999964 579999999999999999999999999999999999999999 999999999987655 4
Q ss_pred hhccEEEcCCCCcc-cccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 557 RRHIAIVPQDPVLF-HDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 557 r~~i~~V~Q~~~LF-~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
++.|+||+|++.|| +.|++|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHH
Confidence 67899999999999 4599999998632 112 245778888899988887777 58999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR---NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~---~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. +| |++++.|+.+++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999988644 6899999999998765 66 999999999999
Q ss_pred hhcC
Q psy4347 699 VRGN 702 (816)
Q Consensus 699 ~~~~ 702 (816)
.+..
T Consensus 227 ~~~p 230 (362)
T TIGR03258 227 YDAP 230 (362)
T ss_pred HhCc
Confidence 8764
No 132
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-42 Score=368.00 Aligned_cols=207 Identities=28% Similarity=0.444 Sum_probs=180.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHHhhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LDSLRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~-~~~lr~~i 560 (816)
|+++||+|+|++ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999964 357999999999999999999999999999999999999999999999999998765 36778899
Q ss_pred EEEcCCCC--cccccHHHHHhcCCCC--CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 561 AIVPQDPV--LFHDTILYNINYGDKS--KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 561 ~~V~Q~~~--LF~~Ti~eNi~~~~~~--~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
+||||++. +|..|+.|||.++... .+ .+++.++++..++.+++.+.| ..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP-----------KTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc-----------ccCCHHHHHHHHHH
Confidence 99999985 5678999999886321 12 244666677777766655443 68999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..|| |++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998864 4799999999999998887 999999998887654
No 133
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.6e-42 Score=355.20 Aligned_cols=206 Identities=28% Similarity=0.433 Sum_probs=181.9
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh----HHHhh
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL----DSLRR 558 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~----~~lr~ 558 (816)
.+.|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 57899999975 4679999999999999999999999999999999999999999999999998876542 34577
Q ss_pred ccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 559 HIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
.++|++|++.+|+.|++||+.++.+ .+.++..++++..++.+++..+|.|++|.++....+||||||||++|||||+.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998754 345667788888899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 639 TPILVFDEATSSLDSITENNILS--SLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~--~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|++|||||||++||+.+...+.+ .++.+. .+.|+|++||+++.+..+| +++..
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d-~i~~l 214 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHAD-WIIAM 214 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCC-EEEEe
Confidence 99999999999999999998887 455443 3689999999999998754 65543
No 134
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5.8e-42 Score=359.48 Aligned_cols=206 Identities=25% Similarity=0.419 Sum_probs=174.7
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999964 57999999999999999999999999999999999999999999999999998766544 45899
Q ss_pred EEcCCCCcc-cccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
|+||++.+| ..|++||+.++.. ..+. +++.+.++..++ +........+||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHH
Confidence 999999885 6799999987532 1221 234444444444 333445557899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcC
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~ 702 (816)
|+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+..|| |++++.|+.+++.+..
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGAL 223 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHc
Confidence 999999999999999999999999999999875 4799999999999998877 8898888888877653
No 135
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.8e-42 Score=355.85 Aligned_cols=195 Identities=31% Similarity=0.489 Sum_probs=166.5
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 5799999999999999999999999999999999999999999999999999765543 56899
Q ss_pred EEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||||++.+|. .|++||+.++.. ..+ .+++.++++..++.+++...| .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999995 699999987521 111 234566677778876655544 6899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||++..+....++|+..
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 204 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM 204 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 999999999999999999999999999998864 3799999999999988754454443
No 136
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-42 Score=356.30 Aligned_cols=201 Identities=23% Similarity=0.342 Sum_probs=172.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 579999999964 5799999999999999999999999999999999999999999999999988653 356788999
Q ss_pred EEcCCCCcccc-cHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFHD-TILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||||++.+|.. |++||+.++.. .. .++++.++++..++.++..+.| .+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999864 99999986411 11 2345777888888877665544 5899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. || |+|++.|+.++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999999988643 7899999999999876 44 77777666554
No 137
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5e-42 Score=377.31 Aligned_cols=211 Identities=27% Similarity=0.371 Sum_probs=179.0
Q ss_pred cEEEEeeEEEeCCCc----------ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC
Q psy4347 481 SIEFRDVNFSYIDKH----------TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~----------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~ 550 (816)
-|+++||+++|+.+. ..++++||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996311 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---HhhccEEEcCCC--Ccc-cccHHHHHhcCC----CCCCH----HHHHHHHHHcCCh-hHHHhCCCCcccccc
Q psy4347 551 VDLDS---LRRHIAIVPQDP--VLF-HDTILYNINYGD----KSKSY----EETIEAAKLADLH-NSIIKWPNHYETQVG 615 (816)
Q Consensus 551 ~~~~~---lr~~i~~V~Q~~--~LF-~~Ti~eNi~~~~----~~~~~----~~i~~a~~~a~l~-~~I~~LP~GydT~VG 615 (816)
++... +|+.|+||+|++ .|| ..||.|||.++. +..+. +.+.++++.+++. +...+.|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-------- 159 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-------- 159 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc--------
Confidence 87543 678999999998 577 579999997531 12232 3455666777773 3333333
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc------
Q psy4347 616 ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL------ 686 (816)
Q Consensus 616 E~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d------ 686 (816)
.+||||||||++|||||+.+|++||+||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||
T Consensus 160 ---~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 160 ---HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 68999999999999999999999999999999999999999999988754 7899999999999986 66
Q ss_pred -CeEEEEcChhHHhhcC
Q psy4347 687 -GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 687 -g~i~~~g~~~~L~~~~ 702 (816)
|+|+|.|+.+++.+..
T Consensus 237 ~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 237 LGHAVELGTYDEVYHNP 253 (331)
T ss_pred CCEEEEEcCHHHHHcCC
Confidence 9999999999988654
No 138
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.7e-42 Score=356.87 Aligned_cols=199 Identities=30% Similarity=0.445 Sum_probs=167.0
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH---Hh
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS---LR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~---lr 557 (816)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996411 147999999999999999999999999999999999999999999999999998876543 34
Q ss_pred -hccEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 558 -RHIAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 558 -~~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+.|+||+|++.+|. .|++||+.++.. ..+ .+++.++++..++++...+.| ..||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP-----------SELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHH
Confidence 68999999999995 699999987421 111 234556666666655544433 68999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..+ ++|+..
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~-d~v~~l 214 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEM 214 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc-CEEEEE
Confidence 99999999999999999999999999999999998874 378999999999999887 455544
No 139
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-42 Score=369.49 Aligned_cols=206 Identities=31% Similarity=0.443 Sum_probs=178.3
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH----hh
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL----RR 558 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l----r~ 558 (816)
.++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 56788888854 579999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ccEEEcCCCCcc-cccHHHHHhcCCC------CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 559 HIAIVPQDPVLF-HDTILYNINYGDK------SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 559 ~i~~V~Q~~~LF-~~Ti~eNi~~~~~------~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
+++||||++.+| +.|++||+.++.. ....+++.++++..++.+++.+.| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 899999999999 5699999987421 112345777888888888777766 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. || |++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 37999999999998865 56 999999999888764
Q ss_pred C
Q psy4347 702 N 702 (816)
Q Consensus 702 ~ 702 (816)
.
T Consensus 252 ~ 252 (269)
T cd03294 252 P 252 (269)
T ss_pred c
Confidence 3
No 140
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.3e-42 Score=358.31 Aligned_cols=205 Identities=23% Similarity=0.388 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~i 560 (816)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999964 57999999999999999999999999999999999999999999999999998777655 35689
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
+|+||++.+|.+ |++||+.++.+ .... +++.++++..++. ........+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHHH
Confidence 999999999976 99999987532 1121 2333444444443 3334455789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. || |++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999999998864 47899999999987766 55 88888888777654
No 141
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-42 Score=366.14 Aligned_cols=206 Identities=29% Similarity=0.428 Sum_probs=180.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999964 5799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCC----------CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDK----------SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~----------~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+||+|++.+|. .|+.||+.++.. ...++++.++++..++.+++.+.| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 99999987765 599999997531 112346778888888877666655 57999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. || |+|++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 37999999999999865 55 8888888877765
Q ss_pred h
Q psy4347 700 R 700 (816)
Q Consensus 700 ~ 700 (816)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
No 142
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-42 Score=360.38 Aligned_cols=205 Identities=26% Similarity=0.449 Sum_probs=174.0
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC------CCChHH
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN------DVDLDS 555 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~------~~~~~~ 555 (816)
|+++||+|.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 57999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhhccEEEcCCCCccc-ccHHHHHhcCC---CCCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 556 LRRHIAIVPQDPVLFH-DTILYNINYGD---KSKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 556 lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~---~~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
+|+.|+||||++.+|. .|+.|||.++. .... .+++.++++..++.+++.+.| .+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHH
Confidence 7889999999999996 49999997531 1111 234556666667666555544 689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
|++|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. +| |++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 47999999999999865 66 888888888776
Q ss_pred hh
Q psy4347 699 VR 700 (816)
Q Consensus 699 ~~ 700 (816)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 43
No 143
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.9e-42 Score=355.94 Aligned_cols=192 Identities=26% Similarity=0.423 Sum_probs=166.4
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEE
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~ 562 (816)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 46899999964 57999999999999999999999999999999999999999999999998774 46889999
Q ss_pred EcCCCCc---ccccHHHHHhcCCCC----------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 563 VPQDPVL---FHDTILYNINYGDKS----------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 563 V~Q~~~L---F~~Ti~eNi~~~~~~----------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
|||++.+ |..|++||+.++... ...+++.++++..++.++..+.| .+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----------GELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHH
Confidence 9999887 568999999876421 12345677788888876655443 58999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+....++|+...
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~ 206 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEc
Confidence 99999999999999999999999999999999998864 67899999999999988666776553
No 144
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=6.9e-42 Score=355.48 Aligned_cols=200 Identities=28% Similarity=0.440 Sum_probs=171.7
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH---HHhh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD---SLRR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~---~lr~ 558 (816)
|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999953 35799999999999999999999999999999999999999999999999999877644 3688
Q ss_pred ccEEEcCCCCcc-cccHHHHHhcCC--CCCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 559 HIAIVPQDPVLF-HDTILYNINYGD--KSKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 559 ~i~~V~Q~~~LF-~~Ti~eNi~~~~--~~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
.++||||++.+| ..|++||+.++. ...+. +++.++++..++.+.+.+.| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP-----------IQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------hhCCHHHHHHHHH
Confidence 999999999875 679999998752 11222 24566777778776655544 6899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEEcC
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHRKT 694 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~g~ 694 (816)
||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+...+++|+....
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSD 212 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999998864 478999999999999987767765543
No 145
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-42 Score=368.99 Aligned_cols=210 Identities=26% Similarity=0.424 Sum_probs=184.0
Q ss_pred cEEEEeeEEEeCCCc---ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHH
Q psy4347 481 SIEFRDVNFSYIDKH---TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LDSL 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~-~~~l 556 (816)
-|+++||+|+|++.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999996421 257999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hhccEEEcCCCC--cccccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 557 RRHIAIVPQDPV--LFHDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 557 r~~i~~V~Q~~~--LF~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
|+.||||||++. +|..|+.||+.++.. ..+ ++++.++++..++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 677799999998632 112 355777888889988877766 6899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc-------CeEEEEcChhHHh
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~ 699 (816)
++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..|| |+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 3799999999999998888 9999999999987
Q ss_pred hc
Q psy4347 700 RG 701 (816)
Q Consensus 700 ~~ 701 (816)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 65
No 146
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=7.3e-42 Score=365.97 Aligned_cols=207 Identities=27% Similarity=0.442 Sum_probs=176.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH---HHh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD---SLR 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~---~lr 557 (816)
-|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999964 5799999999999999999999999999999999999999999999999999876543 357
Q ss_pred hccEEEcCCCCcccc-cHHHHHhcCCC---CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 558 RHIAIVPQDPVLFHD-TILYNINYGDK---SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~~-Ti~eNi~~~~~---~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+.|+||||++.+|.+ |+.||+.++.. ..+. +++.++++..++.+...+.| .+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP-----------SELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHH
Confidence 789999999999975 99999986421 1122 34555667667655443333 68999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. || |++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998643 7899999999998876 55 9999999988887
Q ss_pred hc
Q psy4347 700 RG 701 (816)
Q Consensus 700 ~~ 701 (816)
+.
T Consensus 233 ~~ 234 (269)
T PRK11831 233 AN 234 (269)
T ss_pred cC
Confidence 54
No 147
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.6e-42 Score=359.50 Aligned_cols=205 Identities=17% Similarity=0.319 Sum_probs=174.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~i 560 (816)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... .++.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999964 57999999999999999999999999999999999999999999999999998877654 45679
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCCC----------C----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDKS----------K----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~~----------~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
+|++|++.+|.+ |++||+.++... . ..+++.++++..++.+ ........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 999999999976 999999885321 0 1233455555555433 3334457899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+.++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999976 55 88888888877
Q ss_pred Hhh
Q psy4347 698 LVR 700 (816)
Q Consensus 698 L~~ 700 (816)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 753
No 148
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-42 Score=381.48 Aligned_cols=206 Identities=27% Similarity=0.412 Sum_probs=180.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 3899999999964 579999999999999999999999999999999999999999999999999987654 35789
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
+||||++.+|. .|++|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 599999998632 112 245777888888877766655 589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. || |+|++.|+.+++....
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988643 7899999999998765 56 9999999999887653
No 149
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=367.37 Aligned_cols=210 Identities=29% Similarity=0.457 Sum_probs=185.2
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCc---ceEEECCEeCCCCChHHH
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA---GAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~---G~I~idG~di~~~~~~~l 556 (816)
..|+++|++|+|++ ...++|+||||+|++||++||+||||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPD-SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCC-CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 35999999999964 23579999999999999999999999999999999999999998 899999999988777788
Q ss_pred hhccEEEcCCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 557 RRHIAIVPQDP--VLFHDTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 557 r~~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
+++||||||++ .+++.|+.|||.++.+ ..+. +++.++++..++.++..+.| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 89999999998 4568899999987632 2233 34677888889888776666 6899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc-------CeEEEEcChhHHh
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~ 699 (816)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..|| |++++.|+.+++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988743 789999999999998887 9999999988876
Q ss_pred hc
Q psy4347 700 RG 701 (816)
Q Consensus 700 ~~ 701 (816)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
No 150
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-42 Score=361.98 Aligned_cols=212 Identities=28% Similarity=0.415 Sum_probs=179.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--CCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--VDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~~~ 553 (816)
.|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 579999999999999999999999999999999999997 489999999999864 344
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCCC--C-----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDKS--K-----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~--~-----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+|+.++||+|++.+|+.|++||+.++... . .++++.++++..++++.. .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 5678899999999999999999999875311 1 123456667777774321 1122345578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 55 999999998888
Q ss_pred hhcC
Q psy4347 699 VRGN 702 (816)
Q Consensus 699 ~~~~ 702 (816)
....
T Consensus 234 ~~~~ 237 (251)
T PRK14251 234 FIAP 237 (251)
T ss_pred HhCC
Confidence 6543
No 151
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-42 Score=361.19 Aligned_cols=212 Identities=31% Similarity=0.486 Sum_probs=180.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC---CCC--CcceEEECCEeCCCC--Ch
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF---FEP--NAGAIYIDGKNINDV--DL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl---~~p--~~G~I~idG~di~~~--~~ 553 (816)
.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999964 5799999999999999999999999999999999997 454 599999999998764 34
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC--C-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK--S-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+|+.|+||||++.+|..|++||+.++.. . ..++++.++++..++.+++. +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 677889999999999998899999987521 1 11234566777777755443 233456679999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 66 999999999998
Q ss_pred hhcC
Q psy4347 699 VRGN 702 (816)
Q Consensus 699 ~~~~ 702 (816)
.+..
T Consensus 233 ~~~~ 236 (250)
T PRK14245 233 FTNP 236 (250)
T ss_pred hcCC
Confidence 7643
No 152
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=359.45 Aligned_cols=212 Identities=29% Similarity=0.468 Sum_probs=180.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCC--CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIND--VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~--~~ 552 (816)
+.|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999964 5799999999999999999999999999999999999863 69999999999875 34
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCC--C-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDK--S-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
...+|+.|+||+|++.+|..|++||+.++.. . ..++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678899999999999999999999987531 1 11345666677777654442 22344567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. +| |++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998866 55 88888888888
Q ss_pred Hhhc
Q psy4347 698 LVRG 701 (816)
Q Consensus 698 L~~~ 701 (816)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 7643
No 153
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6e-42 Score=357.11 Aligned_cols=199 Identities=25% Similarity=0.430 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999964 5799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCCcccccHHHHHhcCC---CC-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 561 AIVPQDPVLFHDTILYNINYGD---KS-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 561 ~~V~Q~~~LF~~Ti~eNi~~~~---~~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
+||+|++.+|..|++||+.++. .. ...+++.++++..++.+ +.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999889999998641 11 12344556666666632 2233445789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
++|++|||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+..|| +++...
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d-~i~~l~ 211 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHAD-KVITLQ 211 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCC-EEEEEe
Confidence 9999999999999999999999999999864 3789999999999998754 665554
No 154
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.4e-42 Score=358.96 Aligned_cols=206 Identities=30% Similarity=0.460 Sum_probs=175.5
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC--ChHHHhhc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV--DLDSLRRH 559 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~--~~~~lr~~ 559 (816)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999964 5799999999999999999999999999999999999999999999999999764 34577889
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC---CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK---SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~---~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
++|++|++.+|. .|++||+.++.. ..+ ++++.++++..++.+...+ ....||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHH
Confidence 999999999885 699999987531 111 2345556666666554443 336899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+.+++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998864 47999999999999965 55 888888888877654
No 155
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-42 Score=362.20 Aligned_cols=205 Identities=24% Similarity=0.455 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999964 57999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCcccc-cHHHHHhcCCC----------CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 562 IVPQDPVLFHD-TILYNINYGDK----------SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~~----------~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
||||++.+|.+ |+.||+.++.. ....+++.++++..++.+...+. ...||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHH
Confidence 99999998866 99999998631 11234567778888886655443 3689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. +| |++++.|+.+++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998864 47999999999999875 45 88888777777653
No 156
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=361.38 Aligned_cols=211 Identities=29% Similarity=0.463 Sum_probs=179.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC--C---CcceEEECCEeCCC--CCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--P---NAGAIYIDGKNIND--VDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~--p---~~G~I~idG~di~~--~~~ 553 (816)
-|+++||+|.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5999999999964 579999999999999999999999999999999999997 3 69999999999864 345
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCCC---CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDKS---KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~---~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+|+.|+||||++.+|..|++||+.++... .+ .+++.++++..++.+++. +.......+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6778899999999999988999999875321 12 123555667777765442 223455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 55 999999998887
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
...
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 654
No 157
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=363.48 Aligned_cols=213 Identities=29% Similarity=0.428 Sum_probs=183.3
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--C
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--V 551 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~ 551 (816)
...|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999953 679999999999999999999999999999999999997 589999999999864 3
Q ss_pred ChHHHhhccEEEcCCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDK--SK-S----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 552 ~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~-~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
+...+|+.|+||||++.+|..|++|||.++.. .. + ++++.++++..++.+++. +..+....+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHH
Confidence 45677899999999999998999999987532 11 1 244566777777765542 3345667899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChh
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTST 696 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~ 696 (816)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. || |++++.|+.+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999998855 66 9999999998
Q ss_pred HHhhc
Q psy4347 697 NLVRG 701 (816)
Q Consensus 697 ~L~~~ 701 (816)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 88654
No 158
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-42 Score=364.60 Aligned_cols=211 Identities=28% Similarity=0.433 Sum_probs=177.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--CCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--VDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~~~ 553 (816)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999964 579999999999999999999999999999999999875 799999999999865 344
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC---C-C---CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK---S-K---SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~---~-~---~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+++.|+||+|++.+|.+|++||+.++.. . . .++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 567889999999999998999999987521 1 1 1234566666776643221 223445678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. || |++++.|+.+++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999998765 55 888888888887
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 654
No 159
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=360.29 Aligned_cols=212 Identities=28% Similarity=0.423 Sum_probs=179.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC--CC---CcceEEECCEeCCCC--Ch
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF--EP---NAGAIYIDGKNINDV--DL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~--~p---~~G~I~idG~di~~~--~~ 553 (816)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|++ .| ++|+|.+||+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999964 57999999999999999999999999999999999995 47 599999999998643 34
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC---CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK---SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~---~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+|+.++||||++.+|+.|++||+.++.. .. .++++.++++..++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986521 11 1234556677777654432 234556678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999998765 66 999999999888
Q ss_pred hhcC
Q psy4347 699 VRGN 702 (816)
Q Consensus 699 ~~~~ 702 (816)
.+..
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 6643
No 160
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=370.53 Aligned_cols=209 Identities=27% Similarity=0.409 Sum_probs=176.5
Q ss_pred EEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC---------
Q psy4347 482 IEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND--------- 550 (816)
Q Consensus 482 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~--------- 550 (816)
|+++||+|+|++.. +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999997421 1369999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CChHHHhhccEEEcCCC--CcccccHHHHHhcCCC--CCC----HHHHHHHHHHcCCh-hHHHhC
Q psy4347 551 ---------------VDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDK--SKS----YEETIEAAKLADLH-NSIIKW 606 (816)
Q Consensus 551 ---------------~~~~~lr~~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~-~~I~~L 606 (816)
.+...+|+.||||||+| .+|..||+|||.|+.. ..+ .+++.++++..++. ++..+-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 162 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS 162 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 13456889999999986 6888899999998732 222 24567777777774 444433
Q ss_pred CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-
Q psy4347 607 PNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH- 684 (816)
Q Consensus 607 P~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~- 684 (816)
..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+..
T Consensus 163 -----------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 163 -----------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 37899999999999999999999999999999999999999999998864 48999999999998754
Q ss_pred cc-------CeEEEEcChhHHhhc
Q psy4347 685 LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 685 ~d-------g~i~~~g~~~~L~~~ 701 (816)
|| |+|++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 66 999999988887654
No 161
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.2e-42 Score=356.22 Aligned_cols=204 Identities=25% Similarity=0.401 Sum_probs=171.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~i 560 (816)
|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 579999999964 57999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCCCC--CHH-HHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDKSK--SYE-ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~~~--~~~-~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
+|+||++.+|.. |++||+.++.... ..+ ...++++..+ +++........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999975 9999998763221 111 2233333322 2223334455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999988753 7899999999999986 66 888888888776
No 162
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=360.78 Aligned_cols=210 Identities=28% Similarity=0.440 Sum_probs=178.9
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC-------
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV------- 551 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~------- 551 (816)
.+.|+++||+|.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356999999999964 5799999999999999999999999999999999999999999999999998642
Q ss_pred ------ChHHHhhccEEEcCCCCccc-ccHHHHHhcCCC---CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCC
Q psy4347 552 ------DLDSLRRHIAIVPQDPVLFH-DTILYNINYGDK---SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGER 617 (816)
Q Consensus 552 ------~~~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~---~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~ 617 (816)
....+|+.++||||++.+|. .|++||+.++.. .. ..+++.++++..++.+... ...
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCC
Confidence 13467889999999999996 599999986420 11 1245667777777765531 233
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------Ce
Q psy4347 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GY 688 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~ 688 (816)
...||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. || |+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 47899999999999999999999999999999999999999999999875 48999999999999986 56 99
Q ss_pred EEEEcChhHHhhc
Q psy4347 689 KAHRKTSTNLVRG 701 (816)
Q Consensus 689 i~~~g~~~~L~~~ 701 (816)
+++.|+++++.+.
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999998887654
No 163
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-41 Score=359.83 Aligned_cols=206 Identities=29% Similarity=0.459 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC--------h
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD--------L 553 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~--------~ 553 (816)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999964 57999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhhccEEEcCCCCccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 554 DSLRRHIAIVPQDPVLFH-DTILYNINYGD---KSKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~---~~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
..+|+.++||||++.+|. .|++||+.++. ..... +.+.++++..++.+. ......+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 567889999999999985 69999998641 11122 234445555555433 233457899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChh
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTST 696 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~ 696 (816)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998865 47899999999999876 56 8999999988
Q ss_pred HHhhc
Q psy4347 697 NLVRG 701 (816)
Q Consensus 697 ~L~~~ 701 (816)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 87654
No 164
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=361.42 Aligned_cols=212 Identities=28% Similarity=0.455 Sum_probs=179.1
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCCCC--
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNINDVD-- 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~~~-- 552 (816)
..|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++...+
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35999999999964 5799999999999999999999999999999999999985 8999999999986532
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
...+|+.++||||++.+|..|++||+.++.. ..+. +++.++++.+++.+.+. ........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 3567889999999999999999999987521 1222 34566777777643321 122344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|+++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 66 999999998888
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
.+.
T Consensus 241 ~~~ 243 (258)
T PRK14268 241 FHN 243 (258)
T ss_pred hcC
Confidence 654
No 165
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=363.67 Aligned_cols=209 Identities=33% Similarity=0.495 Sum_probs=181.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+|+|++ ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 7 ~l~i~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCC-CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 5899999999975 234699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCCC-cc-cccHHHHHhcCCCC--CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 561 AIVPQDPV-LF-HDTILYNINYGDKS--KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 561 ~~V~Q~~~-LF-~~Ti~eNi~~~~~~--~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
+||+|++. +| ..|+++|+.++... .+ .+++.++++..++.++..+. ..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE-----------PNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHH
Confidence 99999984 44 66899999876321 12 23566777777876654433 368999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..|| |+|++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988743 789999999999998887 999999999888654
No 166
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.1e-41 Score=371.21 Aligned_cols=207 Identities=29% Similarity=0.450 Sum_probs=177.6
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|+.
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 35999999999964 57999999999999999999999999999999999999999999999999997654 457899
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
||||||++.+|. .|++||+.+... ..+. +++.++++..++. +..++.++ +||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~----~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-------NKADAKVG----ELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hHhcCchh----hCCHHHHHHHHHH
Confidence 999999999985 699999986321 1222 2344555555553 34455554 7999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. || |+++..|+.+++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999874 47999999999999966 66 999999999999765
No 167
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=9.4e-42 Score=351.68 Aligned_cols=197 Identities=32% Similarity=0.518 Sum_probs=167.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC--CChHHHhhc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND--VDLDSLRRH 559 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~--~~~~~lr~~ 559 (816)
|+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+...+++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999964 579999999999999999999999999999999999999999999999999853 345677899
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC---CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK---SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~---~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
|+||+|++.+|. .|++||+.++.. ..+. +++.++++..++.+.+.+.| .+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----------cccCHHHHHHHHH
Confidence 999999999995 699999987531 1222 34555666666655544443 6899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+....++|+..
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999875 4789999999999998755666554
No 168
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-42 Score=361.59 Aligned_cols=210 Identities=30% Similarity=0.451 Sum_probs=178.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCCCC--hH
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNINDVD--LD 554 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~~~--~~ 554 (816)
-+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999964 579999999999999999999999999999999999986 47999999999987543 34
Q ss_pred HHhhccEEEcCCCCcccccHHHHHhcCCC--C------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 555 SLRRHIAIVPQDPVLFHDTILYNINYGDK--S------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
.+|+.++||||++.+|.+|+.||+.++.. + ..++++.++++..++.+++. +.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 57889999999999998899999987521 1 11244667777777765432 234455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 66 899998988888
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 654
No 169
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=364.81 Aligned_cols=206 Identities=26% Similarity=0.367 Sum_probs=175.0
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC--CCChHHHhhc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN--DVDLDSLRRH 559 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~--~~~~~~lr~~ 559 (816)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999964 57999999999999999999999999999999999999999999999999985 3344677889
Q ss_pred cEEEcCCCC--cccccHHHHHhcCC--CCCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 560 IAIVPQDPV--LFHDTILYNINYGD--KSKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 560 i~~V~Q~~~--LF~~Ti~eNi~~~~--~~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
|+||||++. +|..|+.+|+.++. ...+. +++.++++..++.++..+ ...+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHH
Confidence 999999985 56789999998742 11222 345567777777655432 236899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+.. || |++++.|+.+++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998864 47899999999999865 66 899988888887654
No 170
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=362.96 Aligned_cols=213 Identities=31% Similarity=0.477 Sum_probs=182.7
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCC--C
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIND--V 551 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~--~ 551 (816)
.+.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999964 5799999999999999999999999999999999999984 89999999999865 3
Q ss_pred ChHHHhhccEEEcCCCCcccccHHHHHhcCCC--CC-----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDK--SK-----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 552 ~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~-----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
+...+|+.++||+|++.+|..|++||+.++.. .. ..+++.++++.+++.+++. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678899999999999998899999987521 11 1244677777777765543 2345667899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChh
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTST 696 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~ 696 (816)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 55 8999889888
Q ss_pred HHhhc
Q psy4347 697 NLVRG 701 (816)
Q Consensus 697 ~L~~~ 701 (816)
++.+.
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 87654
No 171
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2e-41 Score=361.79 Aligned_cols=210 Identities=28% Similarity=0.425 Sum_probs=175.8
Q ss_pred EEEEeeEEEeCCC------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH-
Q psy4347 482 IEFRDVNFSYIDK------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD- 554 (816)
Q Consensus 482 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~- 554 (816)
|+++||+|.|++. .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 135799999999999999999999999999999999999999999999999999887654
Q ss_pred --HHhhccEEEcCCCC--cc-cccHHHHHhcCC-----C--CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCC
Q psy4347 555 --SLRRHIAIVPQDPV--LF-HDTILYNINYGD-----K--SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 555 --~lr~~i~~V~Q~~~--LF-~~Ti~eNi~~~~-----~--~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LS 622 (816)
.+|+.|+||||++. ++ ..|++|||.++. . ....+++.++++..++.+. .......+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhCC
Confidence 36788999999973 44 469999996531 1 1123456666666666421 1233457899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEE
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHR 692 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~ 692 (816)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. || |++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7999999999999975 66 999999
Q ss_pred cChhHHhhc
Q psy4347 693 KTSTNLVRG 701 (816)
Q Consensus 693 g~~~~L~~~ 701 (816)
|+++++...
T Consensus 233 g~~~~~~~~ 241 (265)
T TIGR02769 233 CDVAQLLSF 241 (265)
T ss_pred CCHHHHcCC
Confidence 999998763
No 172
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=358.25 Aligned_cols=212 Identities=25% Similarity=0.416 Sum_probs=180.2
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC--C---CcceEEECCEeCCCC--C
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--P---NAGAIYIDGKNINDV--D 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~--p---~~G~I~idG~di~~~--~ 552 (816)
+.|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999964 579999999999999999999999999999999999986 4 699999999998653 3
Q ss_pred hHHHhhccEEEcCCCCccc-ccHHHHHhcCC-----CCC--CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 553 LDSLRRHIAIVPQDPVLFH-DTILYNINYGD-----KSK--SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~-----~~~--~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
...+|+.|+||||++.+|. .|++||+.++. ... .++++.++++..++.+++.. .......+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 4567899999999999997 69999998642 111 12346677777787654432 223456789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChh
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTST 696 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~ 696 (816)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 66 9999999998
Q ss_pred HHhhc
Q psy4347 697 NLVRG 701 (816)
Q Consensus 697 ~L~~~ 701 (816)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 88654
No 173
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=357.56 Aligned_cols=211 Identities=28% Similarity=0.482 Sum_probs=179.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-----cceEEECCEeCCCC--Ch
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-----AGAIYIDGKNINDV--DL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-----~G~I~idG~di~~~--~~ 553 (816)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999964 57999999999999999999999999999999999999997 69999999998653 45
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK--SK-S----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~-~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+|+.++||||++.+|..|++||+.++.. .. . ++.+.++++..++.+++. +.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678899999999999998899999987631 11 1 233455556666655433 334566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhc-c-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL-L-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~-d-------g~i~~~g~~~~L 698 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..+ | |++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999886689999999999998875 5 888888888877
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 554
No 174
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=354.57 Aligned_cols=211 Identities=24% Similarity=0.365 Sum_probs=172.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~ 559 (816)
-|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... +++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999964 57999999999999999999999999999999999999999999999999998877644 6788
Q ss_pred cEEEcCCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 560 IAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 560 i~~V~Q~~~LF~~-Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
++||+|++.+|.+ |++||+.++....+.++..+.+ .+.+..++...++ .......||||||||++|||||+.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999974 9999998864222222221111 1112222111111 2234568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. || |++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998864 48999999999997655 55 89999999888864
No 175
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=358.69 Aligned_cols=205 Identities=27% Similarity=0.400 Sum_probs=178.0
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999964 57999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEcCCCCc-ccccHHHHHhcCCCCC------CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVL-FHDTILYNINYGDKSK------SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~L-F~~Ti~eNi~~~~~~~------~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||+|++.+ +..|++||+.++.... .++++.++++..++.+...+.| .+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY-----------PQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999988 5779999998863211 1345667777778766544433 6899999999999999
Q ss_pred hc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 635 IL------KNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 635 ll------~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
|+ .+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+.+++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999865 47899999999999875 55 888888887776
Q ss_pred hh
Q psy4347 699 VR 700 (816)
Q Consensus 699 ~~ 700 (816)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 54
No 176
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=378.02 Aligned_cols=208 Identities=27% Similarity=0.400 Sum_probs=182.4
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999954 579999999999999999999999999999999999999999999999999987654 5789
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
||||||++.||. .|+.|||+|+.. ..+ .+++.++++..++.++..+.| .+||||||||+|||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999995 599999998732 112 245677888888887776666 58999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
|||+++|++||||||||+||+.+...+.+.|+++. .+.|+|+|||+++.+.. +| |+|++.|+.+++....
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887753 37999999999998754 66 9999999999998764
Q ss_pred c
Q psy4347 703 S 703 (816)
Q Consensus 703 ~ 703 (816)
.
T Consensus 242 ~ 242 (377)
T PRK11607 242 T 242 (377)
T ss_pred c
Confidence 3
No 177
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=358.12 Aligned_cols=206 Identities=18% Similarity=0.325 Sum_probs=172.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH-hhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL-RRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l-r~~ 559 (816)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999964 579999999999999999999999999999999999999999999999999988776554 456
Q ss_pred cEEEcCCCCcccc-cHHHHHhcCCCCC-----------------C----HHHHHHHHHHcCChhHHHhCCCCccccccCC
Q psy4347 560 IAIVPQDPVLFHD-TILYNINYGDKSK-----------------S----YEETIEAAKLADLHNSIIKWPNHYETQVGER 617 (816)
Q Consensus 560 i~~V~Q~~~LF~~-Ti~eNi~~~~~~~-----------------~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~ 617 (816)
++||||++.+|.. |++||+.++.... . .+++.++++.. |++......
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV-----------GLLEHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC-----------ChhhhhhCC
Confidence 9999999999975 9999999753100 0 01223333333 344445556
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------C
Q psy4347 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------G 687 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g 687 (816)
..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+.. || |
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999988643 7899999999999976 55 7
Q ss_pred eEEEEcChhHHhh
Q psy4347 688 YKAHRKTSTNLVR 700 (816)
Q Consensus 688 ~i~~~g~~~~L~~ 700 (816)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 8887777776643
No 178
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=358.03 Aligned_cols=211 Identities=29% Similarity=0.463 Sum_probs=180.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCCC--Ch
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNINDV--DL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~~--~~ 553 (816)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999964 5799999999999999999999999999999999999984 899999999998653 33
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC---CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK---SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~---~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+++.++||||++.+|..|++||+.++.. .. .++++.++++..++++.+. +.......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 567889999999999999999999987521 11 1234566777777765442 234556679999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. +| |++++.|+.+++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998755 66 999999998888
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 654
No 179
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.8e-41 Score=353.51 Aligned_cols=200 Identities=26% Similarity=0.366 Sum_probs=170.4
Q ss_pred cEEEEeeEEEeCCCcc-cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH---H
Q psy4347 481 SIEFRDVNFSYIDKHT-KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS---L 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~---l 556 (816)
.|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964111 36999999999999999999999999999999999999999999999999998877643 3
Q ss_pred -hhccEEEcCCCCccc-ccHHHHHhcCC---C---CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 557 -RRHIAIVPQDPVLFH-DTILYNINYGD---K---SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 557 -r~~i~~V~Q~~~LF~-~Ti~eNi~~~~---~---~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
++.++||+|++.+|. .|+.||+.++. . ....+++.++++..++.+++.+.| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 368999999999996 49999998641 1 112356777888888877766655 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChhHHHhccCeEEEE
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-R-NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~-~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
++|||||+.+|++|||||||++||+.+...+.+.|+++. + +.|+|+|||+++.+..|| +++..
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d-~i~~l 219 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCD-RRLRL 219 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCC-EEEEE
Confidence 999999999999999999999999999999999998864 2 789999999999998865 44433
No 180
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=357.92 Aligned_cols=211 Identities=28% Similarity=0.473 Sum_probs=179.6
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCCC--Ch
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNINDV--DL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~~--~~ 553 (816)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999964 5799999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK--SK-S----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~-~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
...|+.|+||+|++.+|..|++||+.++.. .. + ++.+.++++..++.+.+ .+.....+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 677889999999999998999999997632 11 1 23455666666664433 3345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. +| |++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999965 66 888888888887
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
...
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 654
No 181
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-41 Score=371.00 Aligned_cols=211 Identities=28% Similarity=0.444 Sum_probs=178.6
Q ss_pred cEEEEeeEEEeCCCc-------ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh
Q psy4347 481 SIEFRDVNFSYIDKH-------TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~-------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~ 553 (816)
-|+++||++.|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996311 2479999999999999999999999999999999999999999999999999988865
Q ss_pred H---HHhhccEEEcCCC--Cccc-ccHHHHHhcC---CCCC----CHHHHHHHHHHcCChh-HHHhCCCCccccccCCCC
Q psy4347 554 D---SLRRHIAIVPQDP--VLFH-DTILYNINYG---DKSK----SYEETIEAAKLADLHN-SIIKWPNHYETQVGERGL 619 (816)
Q Consensus 554 ~---~lr~~i~~V~Q~~--~LF~-~Ti~eNi~~~---~~~~----~~~~i~~a~~~a~l~~-~I~~LP~GydT~VGE~G~ 619 (816)
. .+|+.|+||||++ .|+. .||.+|+... .... ..+++.++++..++.+ ...+.| .
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-----------~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP-----------H 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC-----------c
Confidence 3 5678999999998 4664 5999988632 1111 2345777888888853 333333 6
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeE
Q psy4347 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYK 689 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i 689 (816)
+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. || |+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999988643 7999999999999975 67 999
Q ss_pred EEEcChhHHhhcC
Q psy4347 690 AHRKTSTNLVRGN 702 (816)
Q Consensus 690 ~~~g~~~~L~~~~ 702 (816)
+|.|+.+++.+..
T Consensus 234 ve~g~~~~~~~~p 246 (327)
T PRK11308 234 VEKGTKEQIFNNP 246 (327)
T ss_pred EEECCHHHHhcCC
Confidence 9999999998754
No 182
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.2e-41 Score=368.39 Aligned_cols=206 Identities=29% Similarity=0.410 Sum_probs=174.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999964 5799999999999999999999999999999999999999999999999998754 35678899
Q ss_pred EEEcCCCCcc-cccHHHHHhcCCC--CCCHH----HHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLF-HDTILYNINYGDK--SKSYE----ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF-~~Ti~eNi~~~~~--~~~~~----~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.+| ..|++||+.+... ..+.+ ++.++++..++.+ .+++.+ .+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcCch----hhCCHHHHHHHHHHH
Confidence 9999999998 4699999975311 12222 3344455555533 334443 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. || |+++..|+.+++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998864 47899999999999875 56 999999999998754
No 183
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=363.66 Aligned_cols=210 Identities=29% Similarity=0.490 Sum_probs=175.0
Q ss_pred EEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC----ChHH
Q psy4347 482 IEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV----DLDS 555 (816)
Q Consensus 482 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~----~~~~ 555 (816)
|+++||+|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996411 14699999999999999999999999999999999999999999999999998764 3467
Q ss_pred HhhccEEEcCCC--CcccccHHHHHhcCCC--CCCHHH----HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 556 LRRHIAIVPQDP--VLFHDTILYNINYGDK--SKSYEE----TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 556 lr~~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~~~----i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
+|+.|+||||++ .+|+.|++|||.++.. ..+.++ +.++++..++.+. .......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 888999999997 6888899999987521 122222 3445555566421 123345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. || |++++.|+.+++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998864 47899999999998865 55 899988988887
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
No 184
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-41 Score=353.51 Aligned_cols=195 Identities=28% Similarity=0.423 Sum_probs=166.5
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996411 1579999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
+||||++.+|. .|++||+.++.. .. ..+++.++++..++.+...+.| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999996 699999987521 11 2345677778888877666555 589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+....++++..
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999998863 3789999999999887655555544
No 185
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-41 Score=355.80 Aligned_cols=210 Identities=27% Similarity=0.462 Sum_probs=179.6
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCC-CCChH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIN-DVDLD 554 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~-~~~~~ 554 (816)
.|+++||+|.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4899999999964 5799999999999999999999999999999999999996 5999999999985 34567
Q ss_pred HHhhccEEEcCCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 555 SLRRHIAIVPQDPVLFHDTILYNINYGDK--SK-S----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~-~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
.+|+.++||||++.+|..|++||+.++.. .. + ++++.++++..++++.+. +.+.....+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 78899999999999999999999987531 11 1 234556667777765442 2334556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999887 55 8888888887775
Q ss_pred h
Q psy4347 700 R 700 (816)
Q Consensus 700 ~ 700 (816)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 4
No 186
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.9e-41 Score=358.49 Aligned_cols=205 Identities=25% Similarity=0.357 Sum_probs=177.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++|++|.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999964 57999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEcCCCCcc-cccHHHHHhcCCCC----------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDKS----------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~~----------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
|++|++.++ ..|++||+.++... ...+++.++++..++.+...+ ....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHH
Confidence 999998654 67999999876310 112356677777777654433 33689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+.. || |+|++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 37899999999999954 66 88888888777654
No 187
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.7e-41 Score=341.22 Aligned_cols=164 Identities=38% Similarity=0.690 Sum_probs=152.7
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++|++|+|++ .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPE-QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCC-CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 579999999965 124799999999999999999999999999999999999999999999999988766 667889999
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
||+|++.+|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 368999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 642 LiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..+|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d 164 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMD 164 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCC
Confidence 999999999999999999999998877899999999999998765
No 188
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-41 Score=359.33 Aligned_cols=198 Identities=28% Similarity=0.446 Sum_probs=171.9
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+++.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999964 57999999999999999999999999999999999999999999999998763 46788
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
++||+|++.+|. .|++||+.++.....++++.++++..++.+...+. ..+||||||||++|||||+++
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHhcC
Confidence 999999999996 69999999864322356777888888887655443 368999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChh
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTST 696 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~ 696 (816)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. || |+|++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998863 37899999999999865 55 7777766543
No 189
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=363.65 Aligned_cols=207 Identities=30% Similarity=0.434 Sum_probs=177.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC--CChHHHhhc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND--VDLDSLRRH 559 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~--~~~~~lr~~ 559 (816)
|+++||+|+|++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999964 3579999999999999999999999999999999999999999999999999852 234567899
Q ss_pred cEEEcCCC--CcccccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 560 IAIVPQDP--VLFHDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 560 i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
|+||||++ .+|..|+.|||.++.. ..+ .+++.++++..++.++.... ..+|||||+||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHH
Confidence 99999997 5788899999987531 112 24566777777876544333 35899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+.+++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47999999999999875 66 999999998887653
No 190
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=361.35 Aligned_cols=211 Identities=27% Similarity=0.449 Sum_probs=178.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--CCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--VDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~~~ 553 (816)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999964 579999999999999999999999999999999999997 699999999999854 345
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC--CCCH-----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK--SKSY-----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~~~-----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+++.++||||++.+|..|++||+.++.. ..++ +.+.++++..++.+ +++......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 677889999999999998899999987521 1111 22344444444432 223344566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 66 999999999888
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 654
No 191
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.7e-41 Score=350.55 Aligned_cols=201 Identities=32% Similarity=0.433 Sum_probs=162.7
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHHh
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL---DSLR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~---~~lr 557 (816)
|+++||+|+|++.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996410 1379999999999999999999999999999999999999999999999999988764 5778
Q ss_pred hccEEEcCCC--Ccc-cccHHHHHhcCC----CCCCHHHHH----HHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 558 RHIAIVPQDP--VLF-HDTILYNINYGD----KSKSYEETI----EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 558 ~~i~~V~Q~~--~LF-~~Ti~eNi~~~~----~~~~~~~i~----~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
+.++||+|++ .++ ..|++||+.++. +...++... ++++..++. +........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 8999999998 344 579999997641 111112111 333444442 1233445578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEEE
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+....++|+..
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 219 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM 219 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 999999999999999999999999999999999999998754 799999999999998644444433
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=379.13 Aligned_cols=194 Identities=33% Similarity=0.476 Sum_probs=171.5
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH----hhccEEEcCCCCccc-c
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL----RRHIAIVPQDPVLFH-D 572 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l----r~~i~~V~Q~~~LF~-~ 572 (816)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++...+ |++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999998876554 458999999999995 5
Q ss_pred cHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q psy4347 573 TILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646 (816)
Q Consensus 573 Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE 646 (816)
|++|||.++.. .. ..+++.++++..++.++..+.| .+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999997521 11 2356778889999988777776 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 647 ATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 647 ~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
|||+||+.+...+++.|+++. .++|+|+|||+++.+.. || |+|++.|+++++....
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 999999999999999998864 47999999999999865 56 9999999999987654
No 193
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=358.86 Aligned_cols=207 Identities=26% Similarity=0.375 Sum_probs=180.6
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999964 579999999999999999999999999999999999999999999999999988888888889
Q ss_pred cEEEcCCCCcc-cccHHHHHhcCC-CC---------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 560 IAIVPQDPVLF-HDTILYNINYGD-KS---------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 560 i~~V~Q~~~LF-~~Ti~eNi~~~~-~~---------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
|+||||++.+| ..|++||+.++. +. ..++++.++++..++.++..+. ..+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----------VDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCChHHHHH
Confidence 99999999988 469999998752 11 1234567788888887665443 37899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
++|||||+++|++|||||||++||+.+...+.+.|+++.+ +.|+|++||++..+.. || |+|++.|+.+++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998743 7899999999998866 55 888888887776
Q ss_pred hh
Q psy4347 699 VR 700 (816)
Q Consensus 699 ~~ 700 (816)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 54
No 194
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-41 Score=347.66 Aligned_cols=193 Identities=28% Similarity=0.456 Sum_probs=166.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ .. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 579999999964 22 39999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcCCCCcccc-cHHHHHhcCCC-C-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFHD-TILYNINYGDK-S-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~~-~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||+|++.+|.+ |++||+.++.. . .+++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999965 99999987632 1 12456788889999987777666 4899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+....++|+..
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 202 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL 202 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEE
Confidence 999999999999999999999999999999874 3799999999999997744444443
No 195
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=356.14 Aligned_cols=210 Identities=31% Similarity=0.504 Sum_probs=180.7
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCCC--ChH
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNINDV--DLD 554 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~~--~~~ 554 (816)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 4 l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 789999999964 579999999999999999999999999999999999875 4899999999998753 456
Q ss_pred HHhhccEEEcCCCCcccccHHHHHhcCCC--C-CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 555 SLRRHIAIVPQDPVLFHDTILYNINYGDK--S-KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~-~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
.+|+.++||||++.+|..|++||+.++.. . .+ .+++.++++..++.+++..+ +...+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 78899999999999999999999987521 1 11 23466677888887765432 34556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc--------CeEEEEcChhHHh
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL--------GYKAHRKTSTNLV 699 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L~ 699 (816)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||++..+..++ |++++.|+.+++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999988765 8888888888876
Q ss_pred hc
Q psy4347 700 RG 701 (816)
Q Consensus 700 ~~ 701 (816)
..
T Consensus 234 ~~ 235 (250)
T PRK14266 234 IN 235 (250)
T ss_pred hC
Confidence 44
No 196
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-41 Score=364.22 Aligned_cols=213 Identities=28% Similarity=0.457 Sum_probs=174.0
Q ss_pred CccEEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC----C-
Q psy4347 479 NASIEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----V- 551 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~----~- 551 (816)
.+.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999996521 1359999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHHHhhccEEEcCCC--CcccccHHHHHhcCCC--CCCHHH----HHHHHHHcCChhHHHhCCCCccccccCCCCCCCh
Q psy4347 552 DLDSLRRHIAIVPQDP--VLFHDTILYNINYGDK--SKSYEE----TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 552 ~~~~lr~~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~~~----i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG 623 (816)
+...+|+.|+||+|++ .+|..|++|||.++.. ....++ +.++++..++ |.++ ......+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCH
Confidence 3467888999999998 4778899999987632 122222 3344444444 2221 2344578999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEc
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRK 693 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g 693 (816)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. || |++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998864 37899999999998765 56 8888888
Q ss_pred ChhHHhhc
Q psy4347 694 TSTNLVRG 701 (816)
Q Consensus 694 ~~~~L~~~ 701 (816)
+.+++.+.
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 88877543
No 197
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=354.29 Aligned_cols=206 Identities=24% Similarity=0.379 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~ 559 (816)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3899999999964 57999999999999999999999999999999999999999999999999998877644 5788
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC---CCCHH----HHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK---SKSYE----ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~---~~~~~----~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
++||||++.+|. .|++||+.++.. ..+.+ .+.+.++..+ ++.........||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-----------IEHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcC-----------CHHHhhcchhhCCHHHHHHHHH
Confidence 999999999996 599999987531 11221 2333333333 3444455567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. || |++++.|+++++.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999998764 47999999999987755 55 88888888887764
No 198
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-41 Score=363.26 Aligned_cols=209 Identities=29% Similarity=0.504 Sum_probs=175.6
Q ss_pred EEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC----ChHH
Q psy4347 482 IEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV----DLDS 555 (816)
Q Consensus 482 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~----~~~~ 555 (816)
|+++||+++|++.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996311 14699999999999999999999999999999999999999999999999998653 2456
Q ss_pred HhhccEEEcCCC--CcccccHHHHHhcCCC--CCCH----HHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCChhHH
Q psy4347 556 LRRHIAIVPQDP--VLFHDTILYNINYGDK--SKSY----EETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 556 lr~~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
.++.|+||||++ .+|..|+.|||.++.. ..+. +.+.++++..++. ++. .....+||||||
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq~ 151 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQM 151 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHHH
Confidence 788999999998 5788899999987531 1222 2355666666664 332 233468999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|+|||+++.+.. || |++++.|+.++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999874 47899999999999865 56 99999999888
Q ss_pred Hhhc
Q psy4347 698 LVRG 701 (816)
Q Consensus 698 L~~~ 701 (816)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 7653
No 199
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-41 Score=358.67 Aligned_cols=201 Identities=31% Similarity=0.480 Sum_probs=170.6
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~~ 552 (816)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999964 579999999999999999999999999999999999998 699999999999863 45
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCCC--C---CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDKS--K---SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~--~---~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
...+|+.|+||||++.+|..|++||+.++... . .++++.++++.+++.+.+ ++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 67788999999999999988999999976421 1 134456667777664332 23344556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEE
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+....++++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~ 224 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999999999999999998778999999999999876543443
No 200
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.7e-41 Score=344.55 Aligned_cols=196 Identities=24% Similarity=0.375 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|+.++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 578999999964 57999999999999999999999999999999999999999999999999986543 56788999
Q ss_pred EEcCCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~ 640 (816)
|++|++.++ +.|++||+.+..+..+++++.++++..++.++..+. ..+||||||||++|||||+++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRP-----------VAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCc-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 679999999875545667788888888887554322 35799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 641 ILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+|||||||++||+.+.+.+.+.|++.. +++|+|+|||+...+..+++++...
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 4799999999999888888777544
No 201
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-41 Score=357.82 Aligned_cols=212 Identities=30% Similarity=0.447 Sum_probs=179.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCC--CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIND--VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~--~~ 552 (816)
+.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999964 5799999999999999999999999999999999999986 48999999999864 34
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCC------CCC-HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDK------SKS-YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~------~~~-~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
...+++.|+||||++.+|..|++||+.++.. ..+ ++.+.++++.+++.+++.. .....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678889999999999999999999987521 111 2345677788888665542 2344567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhc-c------------CeEEEE
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL-L------------GYKAHR 692 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~-d------------g~i~~~ 692 (816)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+... | |++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 999999999999999999999999999999999999999987779999999999998763 2 677777
Q ss_pred cChhHHhhc
Q psy4347 693 KTSTNLVRG 701 (816)
Q Consensus 693 g~~~~L~~~ 701 (816)
|+.+++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 777776543
No 202
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.1e-41 Score=352.81 Aligned_cols=204 Identities=28% Similarity=0.433 Sum_probs=176.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++|++|+|++ +++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 579999999964 579999999999999999999999999999999999999999999999999976543 478899
Q ss_pred EEcCCCCcccc-cHHHHHhcCCCC--C----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFHD-TILYNINYGDKS--K----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~~~--~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||||++.+|.+ |+.||+.++... . ..+++.++++..++.++..+.| .+|||||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP-----------NQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 999999876421 1 1345566667777765554433 6899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
|+++|+++||||||++||+.++..+.+.|++..+ ++|+|++||+++.+.. || |++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998654 7999999999999866 56 999999998888754
No 203
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.6e-41 Score=365.54 Aligned_cols=206 Identities=22% Similarity=0.386 Sum_probs=178.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.+|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999964 579999999999999999999999999999999999999999999999999976 4457889999
Q ss_pred EEcCCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFHD-TILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
|+||++.+|.. |+.||+.+... ..+ .+++.++++..++.+... .....||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHH
Confidence 99999999965 99999986321 111 244566666666655433 3346899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
|+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. || |+++..|+.+++.+..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAAN 223 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhc
Confidence 99999999999999999999999999999998778999999999998876 66 9999999999987653
No 204
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=357.68 Aligned_cols=208 Identities=27% Similarity=0.427 Sum_probs=182.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCE---eCCCCChHHHh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK---NINDVDLDSLR 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~---di~~~~~~~lr 557 (816)
.|+++|+++.|+. .++++||||+|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 4789999999965 67999999999999999999999999999999999999999999999999 66553 3335
Q ss_pred hccEEEcCCCCcc-cccHHHHHhcCC------CC--CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 558 RHIAIVPQDPVLF-HDTILYNINYGD------KS--KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 558 ~~i~~V~Q~~~LF-~~Ti~eNi~~~~------~~--~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
++||+|+|+..|| +.||++||+||- |+ ....++.+.++.+++..+-.+.| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 6899999999999 789999999995 21 23456777888899988888888 7999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
+|+||||..+|++|+||||.++||+.-.+.+.+.|++.. -+.|+++|||+...+.. || |+|...|+.+|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999998753 37899999999988765 44 999999999998
Q ss_pred hhcCch
Q psy4347 699 VRGNSS 704 (816)
Q Consensus 699 ~~~~~~ 704 (816)
...+..
T Consensus 226 ~~~P~s 231 (345)
T COG1118 226 YDHPAS 231 (345)
T ss_pred hcCCCc
Confidence 876654
No 205
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-41 Score=348.44 Aligned_cols=193 Identities=21% Similarity=0.385 Sum_probs=162.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999964 579999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEcCCCCccc-ccHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||+|++.+|. .|++||+.++.. .. ..+++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHH
Confidence 9999999996 499999987421 11 1234556666666655443 3346899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+....++++..
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 201 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLL 201 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEE
Confidence 999999999999999999999999999998864 4789999999999987744444443
No 206
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-41 Score=353.50 Aligned_cols=204 Identities=30% Similarity=0.444 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|+|++ +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 579999999964 579999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcCCCCcccc-cHHHHHhcCC------CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFHD-TILYNINYGD------KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~------~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||+|++.+|.+ |+.||+.++. +...++++.++++..++.+++.+.| .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999998642 1112356777888889888877766 5899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. || |++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998753 7999999999999865 56 888888888777653
No 207
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-41 Score=350.30 Aligned_cols=202 Identities=28% Similarity=0.507 Sum_probs=176.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|+|++ .+ .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999964 22 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EEcCCCCcccc-cHHHHHhcCC-CC-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFHD-TILYNINYGD-KS-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~-~~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||||++.+|.+ |+.||+.++. +. ..++++.++++..++.+.+.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998752 11 12456888899999988887777 5899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. || |++++.|+.+++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988643 7899999999999876 55 888888888877654
No 208
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4e-41 Score=353.80 Aligned_cols=206 Identities=21% Similarity=0.292 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC--CCCCcceEEECCEeCCCCChHHH-hh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLDSL-RR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl--~~p~~G~I~idG~di~~~~~~~l-r~ 558 (816)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999964 5799999999999999999999999999999999999 47999999999999988877554 45
Q ss_pred ccEEEcCCCCcccc-cHHHHHhcCCCC---------CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 559 HIAIVPQDPVLFHD-TILYNINYGDKS---------KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~-Ti~eNi~~~~~~---------~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
.++||+|++.+|.+ |++||+.+.... .+ .+++.++++..++.+.. .+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 69999999999965 999999753110 11 23455556666654211 122221 259999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh--cc-------CeEEEEcC
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH--LL-------GYKAHRKT 694 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~--~d-------g~i~~~g~ 694 (816)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 47899999999999987 46 88888888
Q ss_pred hhHHh
Q psy4347 695 STNLV 699 (816)
Q Consensus 695 ~~~L~ 699 (816)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 76544
No 209
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-41 Score=368.75 Aligned_cols=213 Identities=23% Similarity=0.361 Sum_probs=175.7
Q ss_pred EEEEeeEEEeCCCcc-cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC----CCcceEEECCEeCCCCChHHH
Q psy4347 482 IEFRDVNFSYIDKHT-KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE----PNAGAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~----p~~G~I~idG~di~~~~~~~l 556 (816)
|+++||++.|+.+.. .++|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999965211 469999999999999999999999999999999999998 489999999999998887665
Q ss_pred hh----ccEEEcCCCC--ccc-ccHHHHH----hcCC--C-CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCC
Q psy4347 557 RR----HIAIVPQDPV--LFH-DTILYNI----NYGD--K-SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 557 r~----~i~~V~Q~~~--LF~-~Ti~eNi----~~~~--~-~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LS 622 (816)
++ .|+||||++. |+. .|+.+|+ .... . ....+++.++++..++.+... .+.....+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhCC
Confidence 43 6999999985 442 3665554 3321 1 112356778888888865321 1223447899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHH-hcc-------CeEEEE
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIK-HLL-------GYKAHR 692 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~-~~d-------g~i~~~ 692 (816)
||||||++|||||+.+|++||+||||++||+.+...|++.|+++.+ +.|+|+|||+++.+. .+| |+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 789999999999985 477 999999
Q ss_pred cChhHHhhcC
Q psy4347 693 KTSTNLVRGN 702 (816)
Q Consensus 693 g~~~~L~~~~ 702 (816)
|+.+++.+..
T Consensus 236 g~~~~~~~~p 245 (326)
T PRK11022 236 GKAHDIFRAP 245 (326)
T ss_pred CCHHHHhhCC
Confidence 9999998654
No 210
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5e-41 Score=344.96 Aligned_cols=196 Identities=24% Similarity=0.331 Sum_probs=172.5
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 789999999964 57999999999999999999999999999999999999999999999999987654 45678899
Q ss_pred EEcCCCCccc-ccHHHHHhcCCCC---CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDKS---KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~~---~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
|++|++.+|. .|++||+.++.+. .+++++.++++..++.++..+. ...||||||||++|||||++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhc
Confidence 9999998885 6999999876431 3456778888888887655432 36799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+..++++++..
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998863 4789999999999999998887654
No 211
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-41 Score=354.72 Aligned_cols=211 Identities=30% Similarity=0.447 Sum_probs=179.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCCC--Ch
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNINDV--DL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~~--~~ 553 (816)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999964 5799999999999999999999999999999999999986 799999999999653 34
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK--SK-S----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~-~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+|+.++||||++.+|..|++||+.++.. .. + .+++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 567889999999999999999999987521 11 1 2345667777777544332 23345678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999876 55 899999998887
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 654
No 212
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-41 Score=361.07 Aligned_cols=211 Identities=31% Similarity=0.495 Sum_probs=178.8
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~~ 552 (816)
..|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45999999999964 579999999999999999999999999999999999997 689999999999865 34
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCC-----CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGD-----KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~-----~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
...+|+.++||||++.+|..|+.||+.++. +...++++.++++..++.+.+.. .+.....+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 567889999999999999889999998752 11123567777888877544422 234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc--------CeEEEEcChhHH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL--------GYKAHRKTSTNL 698 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d--------g~i~~~g~~~~L 698 (816)
|++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|+.+++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998767899999999999876 44 777777777666
Q ss_pred hh
Q psy4347 699 VR 700 (816)
Q Consensus 699 ~~ 700 (816)
.+
T Consensus 268 ~~ 269 (285)
T PRK14254 268 FE 269 (285)
T ss_pred Hh
Confidence 54
No 213
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=356.72 Aligned_cols=211 Identities=29% Similarity=0.444 Sum_probs=177.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCC--CCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNIND--VDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~--~~~ 553 (816)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4999999999964 579999999999999999999999999999999999987 489999999999853 455
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCCC--C---CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDKS--K---SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~--~---~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
..+|+.|+||+|++.+|..|+.||+.++... . .++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999988999999876321 1 12445666777777665532 2345667899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-----------------CeEEE
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-----------------GYKAH 691 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-----------------g~i~~ 691 (816)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+...+ |+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999999877789999999999986543 56667
Q ss_pred EcChhHHhhc
Q psy4347 692 RKTSTNLVRG 701 (816)
Q Consensus 692 ~g~~~~L~~~ 701 (816)
.|+.+++.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 7777776543
No 214
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=357.39 Aligned_cols=212 Identities=23% Similarity=0.396 Sum_probs=179.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCCCC-hH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNINDVD-LD 554 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~~~-~~ 554 (816)
.|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999964 5799999999999999999999999999999999999986 7999999999987663 45
Q ss_pred HHhhccEEEcCCCCcccccHHHHHhcCCC---CCCHHHH----HHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 555 SLRRHIAIVPQDPVLFHDTILYNINYGDK---SKSYEET----IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~---~~~~~~i----~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
.+|+.|+||||++.+|..|++||+.++.. ..+.++. .++++..++.+. +++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 67889999999999999999999987531 1233333 334445555332 234455667899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. +| |+|++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667999999999999876 55 9999999999887
Q ss_pred hcC
Q psy4347 700 RGN 702 (816)
Q Consensus 700 ~~~ 702 (816)
+..
T Consensus 251 ~~~ 253 (276)
T PRK14271 251 SSP 253 (276)
T ss_pred hCc
Confidence 653
No 215
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-41 Score=355.55 Aligned_cols=211 Identities=29% Similarity=0.423 Sum_probs=175.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCC--CCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIND--VDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~--~~~ 553 (816)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999964 4799999999999999999999999999999999999985 79999999999853 445
Q ss_pred HHHhhccEEEcCCCCccc-ccHHHHHhcCCC---CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 554 DSLRRHIAIVPQDPVLFH-DTILYNINYGDK---SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~---~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
..+|+.|+||+|++.+|. .|++||+.++.. ..+ ++.+.++++..++.+++. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999996 599999986421 111 234566677777754332 22344557899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------------CeEEE
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------------GYKAH 691 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------------g~i~~ 691 (816)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988777999999999999865 33 67777
Q ss_pred EcChhHHhhc
Q psy4347 692 RKTSTNLVRG 701 (816)
Q Consensus 692 ~g~~~~L~~~ 701 (816)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 7777776543
No 216
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=6.3e-41 Score=369.78 Aligned_cols=206 Identities=29% Similarity=0.417 Sum_probs=176.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999964 57999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred EEEcCCCCcc-cccHHHHHhcCCC--CCCHH----HHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLF-HDTILYNINYGDK--SKSYE----ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF-~~Ti~eNi~~~~~--~~~~~----~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.+| ..|+.||+.+... ..+.+ .+.++++..++ ++..++.++ +||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~~~----~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADARVS----DLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCChh----hCCHHHHHHHHHHH
Confidence 9999999997 5699999986321 12222 23344444444 444555554 79999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. || |+|+..|+.+++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998864 47999999999999976 66 999999999998764
No 217
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=355.83 Aligned_cols=213 Identities=29% Similarity=0.446 Sum_probs=181.7
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCC----
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIN---- 549 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~---- 549 (816)
.+.|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 467999999999964 5799999999999999999999999999999999999985 7999999998874
Q ss_pred CCChHHHhhccEEEcCCCCcccccHHHHHhcCCC--C-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCC
Q psy4347 550 DVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK--S-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 550 ~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LS 622 (816)
..+...+++.|+|++|++.+|.+|++|||.++.. . ..++++.++++.+++.+.+ .+.+.....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCC
Confidence 2344577889999999999998899999987521 1 1135566777777765433 334556678999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcC
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKT 694 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~ 694 (816)
||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |+|++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998778999999999999965 56 88999898
Q ss_pred hhHHhhc
Q psy4347 695 STNLVRG 701 (816)
Q Consensus 695 ~~~L~~~ 701 (816)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 8887643
No 218
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-41 Score=370.39 Aligned_cols=205 Identities=29% Similarity=0.415 Sum_probs=180.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC----ChHHHh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV----DLDSLR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~----~~~~lr 557 (816)
|++ ||+++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +....+
T Consensus 2 l~~-~l~k~~~~---~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 677 99999954 22 3 99999999999999999999999999999999999999999999998653 234568
Q ss_pred hccEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 558 RHIAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
+.|+||+|++.+|. .|++|||.++......+++.++++..++.++..+.| .+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence 89999999999995 699999998855445677888999999887776665 689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |+|++.|+++++.....
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999988643 6899999999998866 55 99999999999987643
No 219
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=352.73 Aligned_cols=212 Identities=29% Similarity=0.447 Sum_probs=175.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-----cceEEECCEeCCC--CCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-----AGAIYIDGKNIND--VDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-----~G~I~idG~di~~--~~~ 553 (816)
-|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3889999999964 57999999999999999999999999999999999999875 8999999999875 344
Q ss_pred HHHhhccEEEcCCCCccc-ccHHHHHhcCCC--CC-CHHHHH----HHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 554 DSLRRHIAIVPQDPVLFH-DTILYNINYGDK--SK-SYEETI----EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~-~~~~i~----~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
..+|+.|+|++|++.+|. .|+.||+.++.. .. ..++.. +.++..++.+.+ ++.+++. ..+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHH
Confidence 577889999999999997 599999986531 11 223322 233344444332 2333433 46899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. || |++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999986 56 99999999998
Q ss_pred HhhcC
Q psy4347 698 LVRGN 702 (816)
Q Consensus 698 L~~~~ 702 (816)
+....
T Consensus 234 ~~~~~ 238 (252)
T PRK14272 234 LFTNP 238 (252)
T ss_pred HHhCc
Confidence 87643
No 220
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7e-41 Score=373.22 Aligned_cols=203 Identities=26% Similarity=0.332 Sum_probs=173.9
Q ss_pred eeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCE----eCCCCChHHHh----
Q psy4347 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK----NINDVDLDSLR---- 557 (816)
Q Consensus 486 ~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~----di~~~~~~~lr---- 557 (816)
++...|+ ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++...+...+|
T Consensus 29 ~~~~~~g---~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETG---LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhC---CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 3445553 256899999999999999999999999999999999999999999999996 67666655543
Q ss_pred hccEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 558 RHIAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
++|+||||++.+|. .|++||+.|+.. ..+ .+++.++++..++.++..+.| .+||||||||++
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~ 174 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVG 174 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHH
Confidence 58999999999996 799999998632 111 245678888889887766655 579999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+.+|+|||||||||+||+.+...+++.|.++.+ ++|+|+|||+++.+.. +| |++++.|++++++.
T Consensus 175 LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 175 LARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999988753 7999999999999754 66 99999999999986
Q ss_pred cC
Q psy4347 701 GN 702 (816)
Q Consensus 701 ~~ 702 (816)
..
T Consensus 255 ~p 256 (382)
T TIGR03415 255 NP 256 (382)
T ss_pred Cc
Confidence 54
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=359.49 Aligned_cols=212 Identities=27% Similarity=0.410 Sum_probs=178.7
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCCC--C
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNINDV--D 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~~--~ 552 (816)
..|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35999999999964 469999999999999999999999999999999999865 4999999999998653 3
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDK--SK-S----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~-~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
...+|+.|+||+|++.+|..|+.|||.++.. .. + .+++.++++..++.+.+.. ........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHHH
Confidence 3457889999999999998899999997531 11 1 2345566677776443321 2234557899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. || |++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 56 99999999988
Q ss_pred Hhhc
Q psy4347 698 LVRG 701 (816)
Q Consensus 698 L~~~ 701 (816)
+.+.
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 8664
No 222
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=366.47 Aligned_cols=210 Identities=21% Similarity=0.338 Sum_probs=177.6
Q ss_pred EEEEeeEEEeCCC-cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC----CCcceEEECCEeCCCCChHHH
Q psy4347 482 IEFRDVNFSYIDK-HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE----PNAGAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 482 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~----p~~G~I~idG~di~~~~~~~l 556 (816)
|+++||+++|+.+ +...+|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 8999999999632 13579999999999999999999999999999999999986 689999999999988887654
Q ss_pred h----hccEEEcCCCC--cc-cccHHHHHhcCC------C----C--CCHHHHHHHHHHcCChh---HHHhCCCCccccc
Q psy4347 557 R----RHIAIVPQDPV--LF-HDTILYNINYGD------K----S--KSYEETIEAAKLADLHN---SIIKWPNHYETQV 614 (816)
Q Consensus 557 r----~~i~~V~Q~~~--LF-~~Ti~eNi~~~~------~----~--~~~~~i~~a~~~a~l~~---~I~~LP~GydT~V 614 (816)
+ +.|+||||++. ++ ..||.+|+.... . . ...+++.++++..++.+ ...+.|
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------- 156 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------- 156 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc-------
Confidence 3 47999999986 33 458999986420 0 0 11346778888888864 234444
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-----
Q psy4347 615 GERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL----- 686 (816)
Q Consensus 615 GE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d----- 686 (816)
.+||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||
T Consensus 157 ----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 157 ----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred ----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 68999999999999999999999999999999999999999999998754 7899999999999965 66
Q ss_pred --CeEEEEcChhHHhhcC
Q psy4347 687 --GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 687 --g~i~~~g~~~~L~~~~ 702 (816)
|+|++.|+.+++.+..
T Consensus 233 ~~G~ive~g~~~~i~~~p 250 (330)
T PRK15093 233 YCGQTVETAPSKELVTTP 250 (330)
T ss_pred ECCEEEEECCHHHHHhCC
Confidence 9999999999987653
No 223
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.6e-41 Score=335.14 Aligned_cols=167 Identities=38% Similarity=0.604 Sum_probs=154.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++|++++|++ .+.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPG-AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 578999999964 2357999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
||+|++.+|..|++||+ ||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 642 LVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 642 LiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|||||||++||+.+...+.+.|+++. +++|+|++||+++.+..| .+++..
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-d~v~~l 168 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASA-DRILVL 168 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC-CEEEEE
Confidence 99999999999999999999998874 478999999999998754 566544
No 224
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.4e-40 Score=343.84 Aligned_cols=187 Identities=30% Similarity=0.550 Sum_probs=164.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
++++||+++|+. +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 378999999953 468999999999999999999999999999999999999999999999987643 4678899
Q ss_pred EEcCCCCccc-ccHHHHHhcCC-CC-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGD-KS-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~-~~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||+|++.+|. .|+.||+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999996 59999998642 11 12456778889999988777776 4899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL 686 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d 686 (816)
|+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d 197 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIAS 197 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC
Confidence 999999999999999999999999999999865 37899999999999876 44
No 225
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-40 Score=366.60 Aligned_cols=214 Identities=26% Similarity=0.383 Sum_probs=176.6
Q ss_pred cEEEEeeEEEeCCC-cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC---cceEEECCEeCCCCChHHH
Q psy4347 481 SIEFRDVNFSYIDK-HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~---~G~I~idG~di~~~~~~~l 556 (816)
-|+++||++.|+.+ +..++|+||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 1357999999999999999999999999999999999999996 9999999999999887665
Q ss_pred h----hccEEEcCCC--Cccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCC
Q psy4347 557 R----RHIAIVPQDP--VLFH-DTILYNINYGD---KSKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 557 r----~~i~~V~Q~~--~LF~-~Ti~eNi~~~~---~~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LS 622 (816)
+ +.|+||||++ .++. .|+.+|+.... ...+. +++.++++..++ |++++ .++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccCC
Confidence 3 4799999998 4553 57877775321 11222 234455555554 43332 2456668999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEE
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHR 692 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~ 692 (816)
||||||++|||||+.+|++||+|||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. +| |+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 7899999999999974 67 999999
Q ss_pred cChhHHhhcC
Q psy4347 693 KTSTNLVRGN 702 (816)
Q Consensus 693 g~~~~L~~~~ 702 (816)
|+.+++.+..
T Consensus 244 g~~~~i~~~p 253 (330)
T PRK09473 244 GNARDVFYQP 253 (330)
T ss_pred CCHHHHHhCC
Confidence 9999998754
No 226
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-40 Score=340.71 Aligned_cols=193 Identities=21% Similarity=0.384 Sum_probs=165.4
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999964 579999999999999999999999999999999999999999999999999875 3457789999
Q ss_pred EEcCCCCcc-cccHHHHHhcCC-CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q psy4347 562 IVPQDPVLF-HDTILYNINYGD-KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~-~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p 639 (816)
|++|++.+| ..|++||+.++. ....+..+.++++..++.+.. +..+ .+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DYPC----GLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hCCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 999999987 579999999863 112234566666666664432 2222 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhccCeE
Q psy4347 640 PILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLLGYK 689 (816)
Q Consensus 640 ~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~dg~i 689 (816)
++|||||||++||+.+...+.+.|+++ .+++|+|++||+...+.++|-.+
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 999999999999999999999999986 35799999999999999887433
No 227
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=351.36 Aligned_cols=211 Identities=28% Similarity=0.410 Sum_probs=175.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC--C---CcceEEECCEeCCC--CCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--P---NAGAIYIDGKNIND--VDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~--p---~~G~I~idG~di~~--~~~ 553 (816)
.|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999964 579999999999999999999999999999999999975 5 59999999999864 334
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC--CC-C----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK--SK-S----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~--~~-~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..+++.++||+|++.+|..|+++|+.++.. .. . ++++.++++.+++.+.+. ........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 567889999999999999999999987521 11 1 234555666666654332 233445678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. || |++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999876 55 788777776666
Q ss_pred hhc
Q psy4347 699 VRG 701 (816)
Q Consensus 699 ~~~ 701 (816)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 543
No 228
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-40 Score=347.82 Aligned_cols=203 Identities=29% Similarity=0.475 Sum_probs=177.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++|++++|++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999953 38999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcCCCCccc-ccHHHHHhcCCCC--C----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDKS--K----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~~--~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||+|++.+|. .|+.||+.++... . .++++.++++..++.+++.+.| .+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999994 7999999875321 1 2345677788888877766555 5899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
++++|++|+|||||++||+.+.+.+.+.|+++.. ++|+|++||++..+.. +| |++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999998643 7999999999999876 66 999999998888764
No 229
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.1e-40 Score=354.38 Aligned_cols=211 Identities=25% Similarity=0.407 Sum_probs=176.6
Q ss_pred cEEEEeeEEEeCCC------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH
Q psy4347 481 SIEFRDVNFSYIDK------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD 554 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~ 554 (816)
.|+++||+++|+.. ++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 124799999999999999999999999999999999999999999999999999765556
Q ss_pred HHhhccEEEcCCCC--ccc-ccHHHHHhcCC---CC----CCHHHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCCh
Q psy4347 555 SLRRHIAIVPQDPV--LFH-DTILYNINYGD---KS----KSYEETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~--LF~-~Ti~eNi~~~~---~~----~~~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LSG 623 (816)
..++.|+||||++. ++. .|+.+|+.++. .. ...+++.++++..++. +..... ..+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-----------PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-----------chhcCH
Confidence 66778999999985 453 48999987531 11 1234577788888884 333322 258999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEc
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRK 693 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g 693 (816)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. || |+|++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999874 37899999999999987 56 8999989
Q ss_pred ChhHHhhcC
Q psy4347 694 TSTNLVRGN 702 (816)
Q Consensus 694 ~~~~L~~~~ 702 (816)
+++++.+..
T Consensus 233 ~~~~~~~~~ 241 (267)
T PRK15112 233 STADVLASP 241 (267)
T ss_pred CHHHHhcCC
Confidence 988887653
No 230
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=360.30 Aligned_cols=211 Identities=27% Similarity=0.459 Sum_probs=179.2
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----CCcceEEECCEeCCCC--C
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PNAGAIYIDGKNINDV--D 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----p~~G~I~idG~di~~~--~ 552 (816)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999964 579999999999999999999999999999999999986 6899999999998653 3
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCCC-------------------CCHHHHHHHHHHcCChhHHHhCCCCcccc
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDKS-------------------KSYEETIEAAKLADLHNSIIKWPNHYETQ 613 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~-------------------~~~~~i~~a~~~a~l~~~I~~LP~GydT~ 613 (816)
...+|+.|+||+|++.+|..||+||+.++... ..++++.++++..++.+ ++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHH
Confidence 56788899999999999999999999975210 01234556666666543 34455
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc------
Q psy4347 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL------ 686 (816)
Q Consensus 614 VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d------ 686 (816)
+.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 66777899999999999999999999999999999999999999999999998777999999999999865 44
Q ss_pred --CeEEEEcChhHHhh
Q psy4347 687 --GYKAHRKTSTNLVR 700 (816)
Q Consensus 687 --g~i~~~g~~~~L~~ 700 (816)
|+|++.|+.+++.+
T Consensus 274 ~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 274 TGGELVEYDDTDKIFE 289 (305)
T ss_pred cCCEEEEeCCHHHHHh
Confidence 77777777777654
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-40 Score=354.32 Aligned_cols=205 Identities=24% Similarity=0.359 Sum_probs=175.5
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC--------cceEEECCEeCCCCCh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN--------AGAIYIDGKNINDVDL 553 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~--------~G~I~idG~di~~~~~ 553 (816)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999954 57999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhhccEEEcCCCC-cccccHHHHHhcCCC-C------C---CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCC
Q psy4347 554 DSLRRHIAIVPQDPV-LFHDTILYNINYGDK-S------K---SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~-LF~~Ti~eNi~~~~~-~------~---~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LS 622 (816)
..+++.++||||++. +|..|++||+.++.. . . ..+.+.++++..++. +.++....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 888889999999986 568899999987531 1 0 123345555566554 33445557899
Q ss_pred hhHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc----
Q psy4347 623 GGEKQRVAIARAIL---------KNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL---- 686 (816)
Q Consensus 623 GGqrQRiaiARAll---------~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d---- 686 (816)
||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998643 7899999999999964 66
Q ss_pred ---CeEEEEcChhHHhh
Q psy4347 687 ---GYKAHRKTSTNLVR 700 (816)
Q Consensus 687 ---g~i~~~g~~~~L~~ 700 (816)
|+|++.|+.+++..
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 88888888877754
No 232
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=351.73 Aligned_cols=211 Identities=25% Similarity=0.375 Sum_probs=181.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCCC--Ch
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNINDV--DL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~~--~~ 553 (816)
.+.++++++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999954 5799999999999999999999999999999999999987 799999999998653 34
Q ss_pred HHHhhccEEEcCCCCcccccHHHHHhcCCC-----CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK-----SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~-----~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
..+|+.|+||||++.+|..|+.|||.++.. ....+++.++++.+++.+.+.. ..++...+|||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999987632 1123567888888888665543 2345667899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhc----------------cCeEEEE
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL----------------LGYKAHR 692 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~----------------dg~i~~~ 692 (816)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+... +|+|++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 999999999999999999999999999999999999987789999999999988652 2677777
Q ss_pred cChhHHhhc
Q psy4347 693 KTSTNLVRG 701 (816)
Q Consensus 693 g~~~~L~~~ 701 (816)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 888877654
No 233
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.2e-40 Score=341.65 Aligned_cols=192 Identities=33% Similarity=0.478 Sum_probs=162.5
Q ss_pred EEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh----HHHhhc
Q psy4347 484 FRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL----DSLRRH 559 (816)
Q Consensus 484 ~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~----~~lr~~ 559 (816)
++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999964 579999999999999999999999999999999999999999999999999765432 246789
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC------CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK------SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~------~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
++||+|++.+|. .|++||+.++.. ....+++.++++..++.+...+. ..+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK-----------IYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC-----------hhhCCHHHHHHHHHH
Confidence 999999999996 699999987421 11234567777777776554333 367999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEE
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
|||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|+|||++..+..| .+|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-d~i~ 204 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQA-DRVI 204 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc-CEEE
Confidence 99999999999999999999999999999998864 479999999999977654 4543
No 234
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.7e-40 Score=352.28 Aligned_cols=204 Identities=23% Similarity=0.342 Sum_probs=173.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC---cceEEECCEeCCCC-----C
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNINDV-----D 552 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~---~G~I~idG~di~~~-----~ 552 (816)
-|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999964 57999999999999999999999999999999999999986 49999999998654 2
Q ss_pred hHHHhhccEEEcCCCCccc-ccHHHHHhcCCCC--------------CCHHHHHHHHHHcCChhHHHhCCCCccccccCC
Q psy4347 553 LDSLRRHIAIVPQDPVLFH-DTILYNINYGDKS--------------KSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~--------------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~ 617 (816)
...+++.++||||++.+|. .|+.||+.++... ...+++.++++..++.+.+.+.
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------- 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR----------- 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----------
Confidence 4567889999999999886 5999999875311 1124567777777776655443
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------C
Q psy4347 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------G 687 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g 687 (816)
..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 36799999999999999999999999999999999999999999999875 37999999999998755 55 7
Q ss_pred eEEEEcChhHH
Q psy4347 688 YKAHRKTSTNL 698 (816)
Q Consensus 688 ~i~~~g~~~~L 698 (816)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 88888887765
No 235
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.7e-40 Score=351.44 Aligned_cols=213 Identities=21% Similarity=0.325 Sum_probs=171.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEe-----CCCCChHH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN-----INDVDLDS 555 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~d-----i~~~~~~~ 555 (816)
-|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 579999999999999999999999999999999999999999999999998 87766544
Q ss_pred ----HhhccEEEcCCCC--cc-cccHHHHHhcCC---CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 556 ----LRRHIAIVPQDPV--LF-HDTILYNINYGD---KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 556 ----lr~~i~~V~Q~~~--LF-~~Ti~eNi~~~~---~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
.++.++||||++. ++ ..|+.+||.+.. ...+..++.+. +++++..++-+ ++.+...+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT-----AGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH-----HHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3567999999984 44 458888986421 01111121111 12334443221 134556678999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcCh
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTS 695 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~ 695 (816)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. || |++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988643 7899999999999975 66 999999999
Q ss_pred hHHhhcC
Q psy4347 696 TNLVRGN 702 (816)
Q Consensus 696 ~~L~~~~ 702 (816)
+++....
T Consensus 237 ~~~~~~~ 243 (258)
T PRK11701 237 DQVLDDP 243 (258)
T ss_pred HHHhcCC
Confidence 9887554
No 236
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-40 Score=361.77 Aligned_cols=198 Identities=25% Similarity=0.361 Sum_probs=169.4
Q ss_pred EeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCc
Q psy4347 490 SYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVL 569 (816)
Q Consensus 490 ~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L 569 (816)
+|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.||||||++.+
T Consensus 2 ~y~---~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 2 VYG---DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASV 77 (302)
T ss_pred eeC---CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCC
Confidence 564 3579999999999999999999999999999999999999999999999999976 445678899999999999
Q ss_pred ccc-cHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q psy4347 570 FHD-TILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPIL 642 (816)
Q Consensus 570 F~~-Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iL 642 (816)
|.. |++||+.++.. ..+ .+++.++++..++.+...+ ...+||||||||++|||||+.+|++|
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~ll 146 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-----------PVGTYSGGMRRRLDIAASLIHQPDVL 146 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-----------chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 965 99999987421 111 2346667777777554333 23689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 643 VFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 643 iLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. || |+|++.|+.+++.+..
T Consensus 147 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 215 (302)
T TIGR01188 147 FLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRL 215 (302)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhc
Confidence 9999999999999999999998874 47999999999999876 66 9999999999987653
No 237
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=351.69 Aligned_cols=213 Identities=26% Similarity=0.402 Sum_probs=180.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECC------EeCCCCCh
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG------KNINDVDL 553 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG------~di~~~~~ 553 (816)
..|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++.+.+.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35999999999964 6799999999999999999999999999999999999999997666655 67766777
Q ss_pred HHHhhccEEEcCCCCcccc-cHHHHHhcCCC--CC-CH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 554 DSLRRHIAIVPQDPVLFHD-TILYNINYGDK--SK-SY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~~LF~~-Ti~eNi~~~~~--~~-~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
..+|+.++|++|++.+|.+ |+.||+.++.. .. +. +.+.++++..++.+++. ......+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 7889999999999999965 99999997532 11 22 23566777777765441 12334567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+.. || |++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999988778999999999999954 66 99999999998
Q ss_pred HhhcC
Q psy4347 698 LVRGN 702 (816)
Q Consensus 698 L~~~~ 702 (816)
+.+..
T Consensus 239 ~~~~~ 243 (257)
T PRK14246 239 IFTSP 243 (257)
T ss_pred HHhCC
Confidence 87653
No 238
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.3e-40 Score=343.83 Aligned_cols=200 Identities=27% Similarity=0.396 Sum_probs=170.6
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH---HHh
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD---SLR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~---~lr 557 (816)
|+++||++.|++.. .+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996411 25799999999999999999999999999999999999999999999999999876643 468
Q ss_pred hccEEEcCCCCccc-ccHHHHHhcCCC---CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 558 RHIAIVPQDPVLFH-DTILYNINYGDK---SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~-~Ti~eNi~~~~~---~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+.|+||||++.+|. .|+.||+.++.. ..+ .+++.++++..++.+++.+.| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999996 699999987531 122 234667777778877776666 58999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++....| ++|+...
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~-d~v~~l~ 215 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVA-DRIVHME 215 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhC-CEEEEEE
Confidence 99999999999999999999999999999999998875 379999999999976544 5665543
No 239
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.8e-40 Score=357.71 Aligned_cols=208 Identities=27% Similarity=0.429 Sum_probs=182.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||++.|+. ++.+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999963 36899999999999999999999999999999999999999999999999998765 77889999
Q ss_pred EEEcCCCCccc-ccHHHHHhcC-----CC-CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFH-DTILYNINYG-----DK-SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~-----~~-~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.++. -|++||+.|. .+ ...++++.+.++..++.+.- ...-..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 99999999885 5999999874 22 12356788999999986622 2223679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR-N-KTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~-~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
||+.+|++|||||||++|||.+...+.+.|+++.+ + +|++++||.++.+.. || |+++..|+.+++.+..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 99999999999999999999999999999998765 4 799999999999988 66 9999999888876553
No 240
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-40 Score=352.39 Aligned_cols=203 Identities=27% Similarity=0.382 Sum_probs=169.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 5999999999964 4679999999999999999999999999999999999999999999999998752 1223469
Q ss_pred EEEcCCCCc---ccccHHHHHhcCCC---------CC-CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 561 AIVPQDPVL---FHDTILYNINYGDK---------SK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 561 ~~V~Q~~~L---F~~Ti~eNi~~~~~---------~~-~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
+||||++.+ +..++++|+.++.. .. ..+.+.++++..++.++..+. + .+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-------~----~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-------I----GELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-------c----ccCCHHHHH
Confidence 999999865 45689999875421 11 134566777888887654332 2 579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc------CeEEEEcChhHHh
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL------GYKAHRKTSTNLV 699 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d------g~i~~~g~~~~L~ 699 (816)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. || |++++.|+++++.
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 9999999999999999999999999999999999998874 47899999999998865 44 8888888887764
No 241
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.2e-40 Score=364.82 Aligned_cols=202 Identities=30% Similarity=0.421 Sum_probs=173.1
Q ss_pred eeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHHhhccE
Q psy4347 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD----LDSLRRHIA 561 (816)
Q Consensus 486 ~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~----~~~lr~~i~ 561 (816)
||+++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ....|+.|+
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999964 33 4 999999999999999999999999999999999999999999999986542 345688999
Q ss_pred EEcCCCCccc-ccHHHHHhcCCCCCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDKSKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
||+|++.+|. .|++||+.++..... .+++.++++..++.+...+.| .+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-----------GRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHHH
Confidence 9999999996 599999998743221 234667777777766555544 689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |++++.|+.+++.....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 99999999999999999999999999998653 7899999999999865 66 99999999999876544
No 242
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-40 Score=349.28 Aligned_cols=192 Identities=25% Similarity=0.393 Sum_probs=163.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999964 5799999999999999999999999999999999999999999999999998643 24589
Q ss_pred EEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
||+|++.+|. .|++||+.++.. ..+ .+++.++++..++.+...+. ..+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRY-----------IWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999986 699999987521 111 23466777777776554433 36899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+...+++|+..
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL 202 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999998863 4799999999999987755444443
No 243
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-40 Score=330.80 Aligned_cols=169 Identities=40% Similarity=0.625 Sum_probs=155.5
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC--hHHHhhc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD--LDSLRRH 559 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~--~~~lr~~ 559 (816)
|+++|++|.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999964 57999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
++|++|++.+|. .|++||+.+. ||||||||++|||||+++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999985 5999999764 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEEE
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+....++|+..
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 174 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVL 174 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999999999999999999999988654 589999999999999766677654
No 244
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-40 Score=349.15 Aligned_cols=212 Identities=29% Similarity=0.464 Sum_probs=179.3
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-----cceEEECCEeCCC--CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-----AGAIYIDGKNIND--VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-----~G~I~idG~di~~--~~ 552 (816)
+.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999964 46999999999999999999999999999999999999986 8999999999853 34
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCC------CCCC-HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGD------KSKS-YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~------~~~~-~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
...+|+.++||+|++.+|..|++||+.++. +..+ ++.+.++++..++.+++.. ..+....+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 567889999999999999999999998642 1111 2446677778887665543 2345667999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc-------------CeEE
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL-------------GYKA 690 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d-------------g~i~ 690 (816)
|||++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+...+ |+|+
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998853 4799999999999987642 6778
Q ss_pred EEcChhHHhhc
Q psy4347 691 HRKTSTNLVRG 701 (816)
Q Consensus 691 ~~g~~~~L~~~ 701 (816)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 88888877654
No 245
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=348.90 Aligned_cols=211 Identities=27% Similarity=0.421 Sum_probs=176.4
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCC--CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNIND--VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~--~~ 552 (816)
..|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999964 5799999999999999999999999999999999999874 69999999999864 34
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCCC-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDKS-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
...+|+.|+||||++.+|..|+.|||.++... ..++++.++++.+++.+++.. ........|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 45678899999999999988999999876311 123455667778787655432 233456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-----------------CeEE
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-----------------GYKA 690 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-----------------g~i~ 690 (816)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.... |+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999999999999877899999999999997643 5555
Q ss_pred EEcChhHHhh
Q psy4347 691 HRKTSTNLVR 700 (816)
Q Consensus 691 ~~g~~~~L~~ 700 (816)
+.|+.+++..
T Consensus 249 ~~g~~~~~~~ 258 (274)
T PRK14265 249 EFSPTEQMFG 258 (274)
T ss_pred EeCCHHHHHh
Confidence 6566666543
No 246
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-40 Score=348.08 Aligned_cols=215 Identities=32% Similarity=0.480 Sum_probs=188.9
Q ss_pred cEEEEeeEEEeCCCcc---------------------cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc
Q psy4347 481 SIEFRDVNFSYIDKHT---------------------KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~---------------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G 539 (816)
.|+++||++-|+.++. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4889999988854311 1247899999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHHh----hccEEEcCCCCcc-cccHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCC
Q psy4347 540 AIYIDGKNINDVDLDSLR----RHIAIVPQDPVLF-HDTILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPN 608 (816)
Q Consensus 540 ~I~idG~di~~~~~~~lr----~~i~~V~Q~~~LF-~~Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~ 608 (816)
+|++||.|+..++.++|| +.+++|||...|| +.||.||..||.+ .. ..+...++++.+|+++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999987774 4799999999999 6799999999954 11 2355788899999999999999
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhc-
Q psy4347 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHL- 685 (816)
Q Consensus 609 GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~- 685 (816)
.+||||++||+.|||||..||+||++|||+|||||--....|+.|.++. -++|+|+|||+|......
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 6899999999999999999999999999999999999999999987653 369999999999987664
Q ss_pred -------cCeEEEEcChhHHhhcCchhh
Q psy4347 686 -------LGYKAHRKTSTNLVRGNSSAM 706 (816)
Q Consensus 686 -------dg~i~~~g~~~~L~~~~~~~~ 706 (816)
||+|++.||++|++.++...|
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 399999999999998876544
No 247
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-40 Score=327.75 Aligned_cols=167 Identities=31% Similarity=0.568 Sum_probs=153.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999964 47999999999999999999999999999999999999999999999999998765 67788999
Q ss_pred EEcCCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q psy4347 562 IVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~ 640 (816)
||||++.+|.+ |++||+. ||||||||++|||||+.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999975 9999984 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 641 ILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
+|||||||++||+.+...+.+.|+++. ++.|+|++||+.+.+....++++...
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~ 169 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILN 169 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999864 46899999999999987666776553
No 248
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.1e-40 Score=335.83 Aligned_cols=186 Identities=24% Similarity=0.377 Sum_probs=162.4
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999964 57999999999999999999999999999999999999999999999999988765 45678999
Q ss_pred EEcCCCCccc-ccHHHHHhcCCCC--CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDKS--KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~~--~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
|++|++.+|. .|++||+.++... ..++++.++++..++.+++.+.| .+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA-----------AQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh-----------hhcCHHHHHHHHHHHHHhcC
Confidence 9999999885 6999999875321 12346788888888877654333 57999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHH
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTI 682 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i 682 (816)
|++|||||||++||+.+.+.+.+.|+++ .++.|+|+|||+...+
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL 190 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 9999999999999999999999999886 4578999999998544
No 249
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.9e-40 Score=343.41 Aligned_cols=195 Identities=29% Similarity=0.443 Sum_probs=157.0
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC---CCcceEEECCEeCCCCChHHHh
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE---PNAGAIYIDGKNINDVDLDSLR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~---p~~G~I~idG~di~~~~~~~lr 557 (816)
++|+||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997621 2689999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hccEEEcCCCCcccc-cHHHHHhcCCC----CCCHHH-----HHH-HHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 558 RHIAIVPQDPVLFHD-TILYNINYGDK----SKSYEE-----TIE-AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~~-Ti~eNi~~~~~----~~~~~~-----i~~-a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
+.|+||||++.+|.+ |++||+.++.. ....++ +.+ .++..++ +........+|||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL-----------TRIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcc-----------hhhhcccccCcCHHHH
Confidence 899999999999976 99999987521 111111 111 2222222 2222334578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh-hHHHhccCeEE
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRL-STIKHLLGYKA 690 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrl-s~i~~~dg~i~ 690 (816)
||++|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||++ ..+..+.++|+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~ 215 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL 215 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999998864 478999999998 46655443333
No 250
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.7e-39 Score=344.65 Aligned_cols=208 Identities=25% Similarity=0.389 Sum_probs=174.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC----CcceEEECCEeCCCCChHHH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP----NAGAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p----~~G~I~idG~di~~~~~~~l 556 (816)
.|+++||+|+| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... ...
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 3 4699999999999999999999999999999999999999 999999999998632 223
Q ss_pred hhccEEEcCCCC-ccc--ccHHHHHhcC----CCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 557 RRHIAIVPQDPV-LFH--DTILYNINYG----DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 557 r~~i~~V~Q~~~-LF~--~Ti~eNi~~~----~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
++.|+||+|++. .|. .|+.+|+.+. .....++++.++++..++.++ ++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 443 5888887542 122344677888888887552 2234555678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999999865 56 9999999988886
Q ss_pred hcC
Q psy4347 700 RGN 702 (816)
Q Consensus 700 ~~~ 702 (816)
...
T Consensus 230 ~~~ 232 (254)
T PRK10418 230 NAP 232 (254)
T ss_pred hCC
Confidence 543
No 251
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.3e-39 Score=338.55 Aligned_cols=196 Identities=24% Similarity=0.373 Sum_probs=168.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 578999999964 57999999999999999999999999999999999999999999999999875422 35799
Q ss_pred EEcCCCCccc-ccHHHHHhcCCC--CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDK--SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~--~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
|+||++.+|. .|++||+.++.. ..+++++.++++..++.+...+-| .+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA-----------KQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH-----------hhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 699999986421 234567888888888876654433 68999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcCh
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTS 695 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~ 695 (816)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. || |++++.|+.
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecCh
Confidence 99999999999999999999999998874 47899999999999865 55 777666654
No 252
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-39 Score=334.49 Aligned_cols=193 Identities=26% Similarity=0.374 Sum_probs=166.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||++.|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .. +|+.++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 799999999964 569999999999999999999999999999999999999999999999998753 22 788999
Q ss_pred EEcCCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDK--SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~--~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
||+|++.++ ..|++||+.+... ...++++.++++..++.++.. .| ..+||||||||++|||||+++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~----------~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LP----------FGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CC----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 6799999987432 234566888889999876443 22 147999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
|++|||||||++||+.+...+.+.|+++ .+++|+|+|||++..+.. .+++..+
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeec
Confidence 9999999999999999999999999875 457999999999999887 5665543
No 253
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=5e-40 Score=333.62 Aligned_cols=175 Identities=30% Similarity=0.455 Sum_probs=150.8
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC--CChHHHhhccEEEcCCC--Cccc
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND--VDLDSLRRHIAIVPQDP--VLFH 571 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~--~~~~~lr~~i~~V~Q~~--~LF~ 571 (816)
++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+++.++||+|++ .+|.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 4679999999999999999999999999999999999999999999999999852 23456788999999998 5788
Q ss_pred ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q psy4347 572 DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645 (816)
Q Consensus 572 ~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLD 645 (816)
.|++||+.++.. ..+ .+++.++++..++.++..+.| .+||||||||++|||||+++|++||||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 899999987521 122 235667777788876655544 689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhH
Q psy4347 646 EATSSLDSITENNILSSLKTAS-RNKTTICIAHRLST 681 (816)
Q Consensus 646 E~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~ 681 (816)
|||++||+.+.+.+.+.|+++. +++|+|+|||++..
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999999998864 47899999999864
No 254
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-39 Score=324.25 Aligned_cols=167 Identities=53% Similarity=0.854 Sum_probs=155.0
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++|++++|++. +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 5789999999651 237999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
|++|++.+|+.|+.||+ ||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 642 LiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|||||||++||+.+...+.+.|+++.+++|+|++||++..+..| ++++..
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~-d~~~~l 167 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDA-DRIIVL 167 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhC-CEEEEE
Confidence 99999999999999999999999887789999999999999885 465543
No 255
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.7e-39 Score=347.55 Aligned_cols=210 Identities=25% Similarity=0.415 Sum_probs=173.3
Q ss_pred EEEEeeEEEeCCC------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh--
Q psy4347 482 IEFRDVNFSYIDK------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-- 553 (816)
Q Consensus 482 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-- 553 (816)
|+++||+|.|++. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999630 03679999999999999999999999999999999999999999999999999987765
Q ss_pred -HHHhhccEEEcCCCC--cc-cccHHHHHhcCCC---CCCH----HHHHHHHHHcCChhHHHhCCCCccc-cccCCCCCC
Q psy4347 554 -DSLRRHIAIVPQDPV--LF-HDTILYNINYGDK---SKSY----EETIEAAKLADLHNSIIKWPNHYET-QVGERGLKL 621 (816)
Q Consensus 554 -~~lr~~i~~V~Q~~~--LF-~~Ti~eNi~~~~~---~~~~----~~i~~a~~~a~l~~~I~~LP~GydT-~VGE~G~~L 621 (816)
..+|+.++||+|++. ++ ..|+.||+.+... ..+. +.+.++++.. |+++ ........|
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~L 152 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAV-----------DLDDSVLDKRPPQL 152 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHc-----------CCChhHhhCCCccC
Confidence 356889999999983 44 4699999865311 1111 1233444433 4442 345566789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEE
Q psy4347 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAH 691 (816)
Q Consensus 622 SGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~ 691 (816)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999988753 7899999999999975 56 99999
Q ss_pred EcChhHHhhcC
Q psy4347 692 RKTSTNLVRGN 702 (816)
Q Consensus 692 ~g~~~~L~~~~ 702 (816)
.|+++++....
T Consensus 233 ~g~~~~~~~~~ 243 (268)
T PRK10419 233 TQPVGDKLTFS 243 (268)
T ss_pred eCChhhccCCC
Confidence 99998877543
No 256
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-39 Score=335.89 Aligned_cols=192 Identities=31% Similarity=0.441 Sum_probs=158.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC----ChHHHh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV----DLDSLR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~----~~~~lr 557 (816)
+++ ||+++|++ ..+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +...++
T Consensus 2 ~~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 2 LCV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred cee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 355 89999965 344 99999999 99999999999999999999999999999999999998643 234568
Q ss_pred hccEEEcCCCCccc-ccHHHHHhcCCCCC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 558 RHIAIVPQDPVLFH-DTILYNINYGDKSK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
+.++||+|++.+|. .|++||+.++.... .++++.++++..++.+.+ .....+||||||||++||
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALA 143 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHH
Confidence 89999999999995 59999998764321 223455566666554433 344578999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEE
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+....++++.
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVV 204 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEE
Confidence 999999999999999999999999999999988743 78999999999999764434433
No 257
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.5e-39 Score=343.19 Aligned_cols=205 Identities=23% Similarity=0.301 Sum_probs=162.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC--CCCCcceEEECCEeCCCCChHHHh-h
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLDSLR-R 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl--~~p~~G~I~idG~di~~~~~~~lr-~ 558 (816)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++...+....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999964 5799999999999999999999999999999999999 479999999999999888776554 5
Q ss_pred ccEEEcCCCCcccc-cHHHHHhcC-------CCC--CCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 559 HIAIVPQDPVLFHD-TILYNINYG-------DKS--KSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~-Ti~eNi~~~-------~~~--~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
.++||+|++.++.. |..+++.+. ... .+. +.+.+.++.. .+|+++.+... ..+||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~~~LS~G 149 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--NVGFSGG 149 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--CCCCCHH
Confidence 79999999987754 544444321 110 011 1122222222 24444444322 1379999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHh--cc-------CeEEEEcC
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKH--LL-------GYKAHRKT 694 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~--~d-------g~i~~~g~ 694 (816)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. +| |++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999988654 6899999999999987 45 77877777
Q ss_pred hhHH
Q psy4347 695 STNL 698 (816)
Q Consensus 695 ~~~L 698 (816)
++++
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 7644
No 258
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.1e-39 Score=341.12 Aligned_cols=208 Identities=21% Similarity=0.301 Sum_probs=169.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEe-----CCCCChHH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN-----INDVDLDS 555 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~d-----i~~~~~~~ 555 (816)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999964 468999999999999999999999999999999999999999999999988 76666543
Q ss_pred ----HhhccEEEcCCCC--cc-cccHHHHHhcC-----CCCC--CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCC
Q psy4347 556 ----LRRHIAIVPQDPV--LF-HDTILYNINYG-----DKSK--SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKL 621 (816)
Q Consensus 556 ----lr~~i~~V~Q~~~--LF-~~Ti~eNi~~~-----~~~~--~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~L 621 (816)
+++.|+|++|++. ++ ..|+.+|+.+. .... .++++.+.++..++. ++........|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----------~~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEID----------PTRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC----------hhhhhcCchhc
Confidence 3467999999985 33 45888888642 1111 122333334443332 13445566789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEE
Q psy4347 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAH 691 (816)
Q Consensus 622 SGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~ 691 (816)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||++..+.. || |++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 37999999999999985 66 99999
Q ss_pred EcChhHHhhc
Q psy4347 692 RKTSTNLVRG 701 (816)
Q Consensus 692 ~g~~~~L~~~ 701 (816)
.|+.+++...
T Consensus 230 ~~~~~~~~~~ 239 (253)
T TIGR02323 230 SGLTDQVLDD 239 (253)
T ss_pred ECCHHHHhcC
Confidence 9988887654
No 259
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.9e-39 Score=341.00 Aligned_cols=194 Identities=26% Similarity=0.376 Sum_probs=169.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999964 5799999999999999999999999999999999999999999999987 3469
Q ss_pred EEEcCCCCccc---ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 561 AIVPQDPVLFH---DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 561 ~~V~Q~~~LF~---~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
+||||++.++. .|+.+|+.+. +..+++++.++++..++.+.+.+.| ..||||||||++|||||+.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLIDAPM-----------QKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHHhCCh-----------hhCCHHHHHHHHHHHHHhc
Confidence 99999998874 4899998764 3345678888999999987765543 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc------CeEEEEcChhHHhh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL------GYKAHRKTSTNLVR 700 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d------g~i~~~g~~~~L~~ 700 (816)
+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |+|++.|+.+++.+
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~g~~~~~~~ 209 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSL 209 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEeeCCHHHHhC
Confidence 9999999999999999999999999988643 7899999999999866 55 66777777777653
No 260
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.7e-39 Score=340.30 Aligned_cols=204 Identities=23% Similarity=0.298 Sum_probs=169.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC--CCCCcceEEECCEeCCCCChHHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl--~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
.|+++||++.|++ +++|+||||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++..++....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4999999999964 5799999999999999999999999999999999998 6899999999999998887666554
Q ss_pred -ccEEEcCCCCcccc-cHHHHHhcCCC---------CCC----HHHHHHHHHHcCChh-HHHhCCCCccccccCCCCCCC
Q psy4347 559 -HIAIVPQDPVLFHD-TILYNINYGDK---------SKS----YEETIEAAKLADLHN-SIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 559 -~i~~V~Q~~~LF~~-Ti~eNi~~~~~---------~~~----~~~i~~a~~~a~l~~-~I~~LP~GydT~VGE~G~~LS 622 (816)
.+++++|++.+|.+ |+.+|+.++.. ..+ .+++.++++..++.+ .+.+ .++ ..||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~---~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSR-------NVN---EGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcc-------ccc---cCCC
Confidence 58999999999965 89999876421 111 133455666666642 2222 222 2599
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh--cc-------CeEEEE
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH--LL-------GYKAHR 692 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~--~d-------g~i~~~ 692 (816)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. +| |++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998874 47999999999999875 56 888888
Q ss_pred cChhH
Q psy4347 693 KTSTN 697 (816)
Q Consensus 693 g~~~~ 697 (816)
|++++
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 88874
No 261
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-39 Score=331.83 Aligned_cols=181 Identities=25% Similarity=0.381 Sum_probs=152.2
Q ss_pred cEEEEeeEEEeCCC-cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC---CCcceEEECCEeCCCCChHHH
Q psy4347 481 SIEFRDVNFSYIDK-HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE---PNAGAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~---p~~G~I~idG~di~~~~~~~l 556 (816)
.+.++||+|.|+.+ +++++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++...+ ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999753 35689999999999999999999999999999999999999 89999999999998764 457
Q ss_pred hhccEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 557 RRHIAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
++.++||+|++.+|. .|++||+.++... . ..+....||||||||++|||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC----------K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh----------c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 889999999998886 5999999875310 0 1223368999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEe-cChhHHHhccCeEE
Q psy4347 636 LKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIA-HRLSTIKHLLGYKA 690 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~Ia-Hrls~i~~~dg~i~ 690 (816)
+++|++|||||||++||+.+++.+.+.|+++.+ +.|+|+++ |++..+...+++++
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 999999999999999999999999999998754 46766665 55667655443443
No 262
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.9e-39 Score=321.99 Aligned_cols=160 Identities=32% Similarity=0.459 Sum_probs=145.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 578999999964 357999999999999999999999999999999999999999999999983 6799
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
||+|++.+|+.|++||+.++ ....||||||||++|||||+++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999864 2368999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 642 LiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|||||||++||+.+.+.+.+.|+++ ++|+|+|||+++....| ++++..
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~-d~i~~l 160 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFH-DRVLDL 160 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhC-CEEEEE
Confidence 9999999999999999999999887 68999999999876644 555543
No 263
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.2e-39 Score=325.11 Aligned_cols=169 Identities=27% Similarity=0.430 Sum_probs=153.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
.|+++|++++| +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999988 7999999999999999999999999999999999999999999999999988764 457889
Q ss_pred cEEEcCCC---Ccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 560 IAIVPQDP---VLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 560 i~~V~Q~~---~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
++||+|++ .+| +.|++||+.++.. ||||||||++|||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 345 5799999987531 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 636 LKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+...+++++...
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~ 178 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMY 178 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEec
Confidence 99999999999999999999999999998864 47999999999999988666776553
No 264
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.6e-39 Score=365.58 Aligned_cols=213 Identities=28% Similarity=0.451 Sum_probs=180.7
Q ss_pred ccEEEEeeEEEeCCC--------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEe--CC
Q psy4347 480 ASIEFRDVNFSYIDK--------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN--IN 549 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~d--i~ 549 (816)
.-++++||+++|..+ ....+++||||+|++||++||||+||||||||.++|+|+++|++|+|.++|.| +.
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 358999999999741 13578999999999999999999999999999999999999999999999987 33
Q ss_pred CCChHHHhhccEEEcCCCCc--c-cccHHHHHhcCC----CC--C-CHHHHHHHHHHcCChh-HHHhCCCCccccccCCC
Q psy4347 550 DVDLDSLRRHIAIVPQDPVL--F-HDTILYNINYGD----KS--K-SYEETIEAAKLADLHN-SIIKWPNHYETQVGERG 618 (816)
Q Consensus 550 ~~~~~~lr~~i~~V~Q~~~L--F-~~Ti~eNi~~~~----~~--~-~~~~i~~a~~~a~l~~-~I~~LP~GydT~VGE~G 618 (816)
.-+...+|+.+-+|+|||+- - ..||.++|.-.- +. + ..+.+.+.++..++.. +..+.|
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP----------- 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP----------- 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------
Confidence 22355688899999999974 4 569999997431 11 1 1245777889999965 677777
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc--------Ce
Q psy4347 619 LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL--------GY 688 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d--------g~ 688 (816)
.+||||||||+||||||..+|++||+|||||+||+.+...|.+.|+++.+ |.|.|+|||+++.++..+ |+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 78999999999999999999999999999999999999999999988654 699999999999998865 99
Q ss_pred EEEEcChhHHhhcCc
Q psy4347 689 KAHRKTSTNLVRGNS 703 (816)
Q Consensus 689 i~~~g~~~~L~~~~~ 703 (816)
|||.|+.+++.+...
T Consensus 508 iVE~G~~~~v~~~p~ 522 (539)
T COG1123 508 IVEEGPTEKVFENPQ 522 (539)
T ss_pred EEEeCCHHHHhcCCC
Confidence 999998888777644
No 265
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=323.35 Aligned_cols=208 Identities=26% Similarity=0.397 Sum_probs=180.4
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|++.+++++|++ -..+++||||+++.||++||.|||||||||++++|..|+.|++|.|.+||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999976 4558999999999999999999999999999999999999999999999999876 5678899999
Q ss_pred EEcCCCCcc-cccHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
+++-+.-|+ ..|++|||.|+.. +. ...++.+..+..++.+.+ |+.+| +||-|+||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHH
Confidence 999888898 5599999998632 11 134566666777776665 34444 699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
|++||++++||||||+||..+.+.+.+-|++++. |+++|+.||.++.++. || |+++..|+.+++.+..+
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 9999999999999999999999999999998765 8999999999999994 56 88888888888877654
No 266
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.8e-39 Score=333.81 Aligned_cols=200 Identities=26% Similarity=0.380 Sum_probs=162.6
Q ss_pred EEEEeeEEEeCCC---c-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEEC--CE--eCCCCCh
Q psy4347 482 IEFRDVNFSYIDK---H-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID--GK--NINDVDL 553 (816)
Q Consensus 482 I~~~~vsf~Y~~~---~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~id--G~--di~~~~~ 553 (816)
|+++||+++|+.. . ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2479999999999999999999999999999999999999999999998 43 6666655
Q ss_pred HH---H-hhccEEEcCCCCccc-ccHHHHHhcCC--CCCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCC
Q psy4347 554 DS---L-RRHIAIVPQDPVLFH-DTILYNINYGD--KSKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 554 ~~---l-r~~i~~V~Q~~~LF~-~Ti~eNi~~~~--~~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LS 622 (816)
.. + ++.++||+|++.+|. .|++|||.+.. ...+ .+++.++++..++.+...+ ..+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWH----------LPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhh----------CCcccCC
Confidence 43 3 457999999999885 59999997631 1122 2345566666666443322 2346899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEE
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+....++++.
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMD 221 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEe
Confidence 999999999999999999999999999999999999999998864 478999999999999765557664
No 267
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.9e-39 Score=331.20 Aligned_cols=196 Identities=23% Similarity=0.338 Sum_probs=166.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++|++++|++ +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4999999999964 5699999999999999999999999999999999999999999999999998753 346689
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCC--CC-CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDK--SK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~--~~-~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
+|++|++.+|.. |++||+.++.. .. .++.+.++++..++.+. +++.+ ..||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTLV----RQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCCh----hhCCHHHHHHHHHHHHHh
Confidence 999999999976 99999976421 11 23445556666665433 33333 579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
++|++|||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+...+.+++..+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 999999999999999999999999999875 457899999999999998888877654
No 268
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-39 Score=328.59 Aligned_cols=186 Identities=23% Similarity=0.365 Sum_probs=159.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999953 4455 599999999999999999999999999999999999999999999886543 35699
Q ss_pred EEcCCCCc-ccccHHHHHhcCCCCC-CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q psy4347 562 IVPQDPVL-FHDTILYNINYGDKSK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639 (816)
Q Consensus 562 ~V~Q~~~L-F~~Ti~eNi~~~~~~~-~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p 639 (816)
|++|++.+ |..|++||+.++.+.. ..+++.++++..++.++..+ .+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99998755 5789999998864322 34567777788887665433 35789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhcc
Q psy4347 640 PILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 640 ~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~d 686 (816)
++|||||||++||+.+...+.+.|++. .+++|+|+|||+++.++.+|
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~ 190 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQ 190 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhh
Confidence 999999999999999999999999753 45799999999999998876
No 269
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-39 Score=326.62 Aligned_cols=214 Identities=24% Similarity=0.407 Sum_probs=181.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
-++++||+-.|+. .++|+||||++++||+++++|+||+||||++|.|+|+.+|.+|+|.++|.||...++ +..|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999964 689999999999999999999999999999999999999999999999999999987 556889
Q ss_pred cEEEcCCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 560 IAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 560 i~~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
|+||||.-.+| +.||.||+.+|.-...+++ .....+++...-+| -+......+|.+|||||+|.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~----~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKE----AQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccc----cccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999999999 5699999998732211100 00111222233344 355566778899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
|++|+|||||.+|-|.-.++|.+.|+++.+ +.|+++|.++...+.. +| |+|+..|+.+||.++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999874 6799999999988764 55 9999999999998764
No 270
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=9e-39 Score=327.56 Aligned_cols=177 Identities=25% Similarity=0.346 Sum_probs=154.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC--CCCCcceEEECCEeCCCCChHHH-hh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLDSL-RR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl--~~p~~G~I~idG~di~~~~~~~l-r~ 558 (816)
++++||+++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999964 5799999999999999999999999999999999999 58999999999999998876554 55
Q ss_pred ccEEEcCCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 559 HIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~-Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
.++||||++.+|.+ |+++|+ ... ..+||||||||++|||||+.
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~~-----------~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RYV-----------NEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hhc-----------cccCCHHHHHHHHHHHHHhc
Confidence 69999999999975 666665 011 14799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHH--hcc-------CeEEEEcChhHH
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIK--HLL-------GYKAHRKTSTNL 698 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~--~~d-------g~i~~~g~~~~L 698 (816)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .+| |++++.| ..++
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL 191 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence 999999999999999999999999999875 3789999999999998 466 8888877 3444
No 271
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=6.5e-39 Score=327.18 Aligned_cols=173 Identities=32% Similarity=0.497 Sum_probs=151.1
Q ss_pred cEEEEeeEEEeCCC---cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC--CCCcceEEECCEeCCCCChHH
Q psy4347 481 SIEFRDVNFSYIDK---HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF--EPNAGAIYIDGKNINDVDLDS 555 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~--~p~~G~I~idG~di~~~~~~~ 555 (816)
.|+++||+|+|++. .++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999641 0267999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhhccEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 556 LRRHIAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 556 lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
+++.++|++|++.+|. .|++||+.++.. +. .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~----------~~------------------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK----------LR------------------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH----------hc------------------------cCCHHHHHHHHHHHH
Confidence 7889999999999986 599999975321 00 799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChh-HHHhccCeEE
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLS-TIKHLLGYKA 690 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls-~i~~~dg~i~ 690 (816)
|+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++ .+....++++
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~ 183 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLL 183 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEE
Confidence 999999999999999999999999999999874 4899999999997 5655443443
No 272
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.9e-39 Score=323.50 Aligned_cols=169 Identities=34% Similarity=0.542 Sum_probs=151.1
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEE
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~ 562 (816)
+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 57899999964 579999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q psy4347 563 VPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPIL 642 (816)
Q Consensus 563 V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iL 642 (816)
++| +++..++.+++.+. ..+||||||||++|||||+++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHLADRP-----------FNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 66777777665443 4689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEEE
Q psy4347 643 VFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 643 iLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+....++++..
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 171 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL 171 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999988754 789999999999986654454443
No 273
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.1e-38 Score=368.09 Aligned_cols=206 Identities=24% Similarity=0.414 Sum_probs=176.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHh-hc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR-RH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr-~~ 559 (816)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999964 5799999999999999999999999999999999999999999999999999887766554 57
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCCCC--CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDKSK--SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~~~--~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
+|||+|++.+|. .|++||+.++.... ..+++.++++..++.+...+ ...+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDS-----------SAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccC-----------ChhhCCHHHHHHHHHHHHHH
Confidence 999999999886 59999999874322 23456677777777543322 23579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||++..+.. || |+|++.|+.+++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998864 47899999999999865 56 89988888877643
No 274
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-39 Score=325.52 Aligned_cols=174 Identities=24% Similarity=0.374 Sum_probs=150.8
Q ss_pred cEEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC--CCCcceEEECCEeCCCCChHHHh
Q psy4347 481 SIEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF--EPNAGAIYIDGKNINDVDLDSLR 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~--~p~~G~I~idG~di~~~~~~~lr 557 (816)
.|+++||+|.|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999996411 257999999999999999999999999999999999986 489999999999885 5678
Q ss_pred hccEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 558 RHIAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
+.++|++|++.+|. .|++||+.++.. ++ +||||||||++|||||+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 89999999998886 499999986420 00 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChh-HHHhccCeEEEE
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLS-TIKHLLGYKAHR 692 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls-~i~~~dg~i~~~ 692 (816)
.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++ .+....++|+..
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l 182 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL 182 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEE
Confidence 9999999999999999999999999998864 4799999999998 455544455544
No 275
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-38 Score=376.07 Aligned_cols=210 Identities=26% Similarity=0.387 Sum_probs=177.8
Q ss_pred cEEEEeeEEEeCCCc--------ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC
Q psy4347 481 SIEFRDVNFSYIDKH--------TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD 552 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~ 552 (816)
-|+++||++.|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 499999999996310 246999999999999999999999999999999999999999999999999998775
Q ss_pred hH---HHhhccEEEcCCC--Ccc-cccHHHHHhcCC--CC-----CCHHHHHHHHHHcCCh-hHHHhCCCCccccccCCC
Q psy4347 553 LD---SLRRHIAIVPQDP--VLF-HDTILYNINYGD--KS-----KSYEETIEAAKLADLH-NSIIKWPNHYETQVGERG 618 (816)
Q Consensus 553 ~~---~lr~~i~~V~Q~~--~LF-~~Ti~eNi~~~~--~~-----~~~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G 618 (816)
.. .+|+.|+||||++ .+| ..||.||+.++. .. ...+++.++++..++. +...+.|
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----------- 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP----------- 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----------
Confidence 43 4677899999998 477 459999997531 01 1124566777888884 4445554
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------Ce
Q psy4347 619 LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GY 688 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~ 688 (816)
.+|||||||||+|||||+.+|++||||||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. || |+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999988643 7899999999999976 55 99
Q ss_pred EEEEcChhHHhhc
Q psy4347 689 KAHRKTSTNLVRG 701 (816)
Q Consensus 689 i~~~g~~~~L~~~ 701 (816)
|++.|+.+++...
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999998754
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=369.23 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=172.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~ 559 (816)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999964 57999999999999999999999999999999999999999999999999998877654 3567
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC------C---CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK------S---KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~------~---~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
|+||+|++.+|. .|++||+.++.. . .+ .+++.++++..++.+.. +.. ..+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~----~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-------DEK----VANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-------ccc----hhhCCHHH
Confidence 999999999885 499999987531 1 01 13455566666664332 222 25799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChh
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTST 696 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~ 696 (816)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |+++..|+.+
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999998864 47899999999999876 55 8888888877
Q ss_pred HHh
Q psy4347 697 NLV 699 (816)
Q Consensus 697 ~L~ 699 (816)
++.
T Consensus 231 ~~~ 233 (510)
T PRK09700 231 DVS 233 (510)
T ss_pred hCC
Confidence 653
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=367.31 Aligned_cols=204 Identities=24% Similarity=0.387 Sum_probs=171.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC--CcceEEECCEeCCCCChHH-Hh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP--NAGAIYIDGKNINDVDLDS-LR 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p--~~G~I~idG~di~~~~~~~-lr 557 (816)
-|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999954 5799999999999999999999999999999999999996 8999999999998776543 46
Q ss_pred hccEEEcCCCCccc-ccHHHHHhcCCCC-----CCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 558 RHIAIVPQDPVLFH-DTILYNINYGDKS-----KSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~-----~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
+.||||||++.+|. .|++||+.++... .+. +++.++++..++.+.. + ....+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-------A----TPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-------c----cchhhCCHHHHH
Confidence 78999999999885 5999999886321 121 3455566666553322 2 233679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
|++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. || |+|+..|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999998863 47899999999999876 56 888888877665
No 278
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-39 Score=314.40 Aligned_cols=209 Identities=27% Similarity=0.450 Sum_probs=182.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC---------
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV--------- 551 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~--------- 551 (816)
.++++|++++|+. ..||++|||+.++|+.++|+|.|||||||++++|.=+-.|+.|.|.++|..|+-.
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5899999999965 5799999999999999999999999999999999999999999999999987642
Q ss_pred -C---hHHHhhccEEEcCCCCcc-cccHHHHHhcC------CCCC-CHHHHHHHHHHcCChhHHHhCCCCccccccCCCC
Q psy4347 552 -D---LDSLRRHIAIVPQDPVLF-HDTILYNINYG------DKSK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERGL 619 (816)
Q Consensus 552 -~---~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~------~~~~-~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~ 619 (816)
+ .+.+|.+.|+|+|...|+ +.||.||+.-+ .+.. ..|..+..+..+|+.+--...| .
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------A 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------c
Confidence 2 356789999999999999 67999999633 2211 1234455567789988887888 7
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc--------CeEE
Q psy4347 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL--------GYKA 690 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d--------g~i~ 690 (816)
.|||||+||+||||||.-+|+++++|||||||||+-..++++.++++. +|+|+++|||.+...++.. |.|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 899999999999999999999999999999999999999999999875 5899999999999999986 9999
Q ss_pred EEcChhHHhhcCc
Q psy4347 691 HRKTSTNLVRGNS 703 (816)
Q Consensus 691 ~~g~~~~L~~~~~ 703 (816)
|+|+++++..+..
T Consensus 232 E~G~P~qvf~nP~ 244 (256)
T COG4598 232 EEGPPEQVFGNPQ 244 (256)
T ss_pred ccCChHHHhcCCC
Confidence 9999999887654
No 279
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.7e-38 Score=332.71 Aligned_cols=200 Identities=22% Similarity=0.303 Sum_probs=167.4
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
++++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.+||.++...+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheE
Confidence 356777774 27999999999999999999999999999999999995 5999999999998888888888999
Q ss_pred EEcCCCCcc-cccHHHHHhcCCCC-CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDKS-KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~~-~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
||||++.++ ..|+++|+.++.+. .+ .+++.++++..++.+... .....||||||||++|||||
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 141 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVV 141 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 999998655 77999999987432 11 234566666666654433 34468999999999999999
Q ss_pred cc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 636 LK-------NTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 636 l~-------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
+. +|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+++++.
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 97 679999999999999999999999998874 47899999999997755 55 8888888887775
Q ss_pred h
Q psy4347 700 R 700 (816)
Q Consensus 700 ~ 700 (816)
+
T Consensus 222 ~ 222 (248)
T PRK03695 222 T 222 (248)
T ss_pred C
Confidence 4
No 280
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=308.64 Aligned_cols=185 Identities=28% Similarity=0.479 Sum_probs=164.2
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHH
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~ 575 (816)
+.++|+++||++.+||.+||+||||||||||+|.++-+..|++|++++.|.|+..++++.+|++|+|+-|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCC
Q psy4347 576 YNINYGD----KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651 (816)
Q Consensus 576 eNi~~~~----~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~L 651 (816)
||+-|.- ...+.....+.++.+++.+.+ +..+-.+||||||||+||+|-|---|+||+|||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9998862 122445556666777776554 34456789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCCEEEEEecChhH-HHhccCeEE
Q psy4347 652 DSITENNILSSLKTAS--RNKTTICIAHRLST-IKHLLGYKA 690 (816)
Q Consensus 652 D~~te~~i~~~l~~~~--~~~T~i~IaHrls~-i~~~dg~i~ 690 (816)
|+.+.+.|.+.|.++. ++..++-|||+... ++++|-.|.
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~it 206 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVIT 206 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEE
Confidence 9999999999998865 46899999999988 888885553
No 281
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.9e-38 Score=365.06 Aligned_cols=204 Identities=24% Similarity=0.345 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~ 559 (816)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999954 57999999999999999999999999999999999999999999999999997665544 4678
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCCC------CCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDKS------KSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~~------~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
|+||+|++.+|. .|++||+.++... .+. +++.++++..++.+.. +. ...+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-------DK----LVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-------cC----chhhCCHHHHHH
Confidence 999999999885 5999999886321 111 3455566666664432 22 235799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|+|||+++.+.. || |++++.|+.+++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999999998863 47899999999999876 55 888888876655
No 282
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.5e-38 Score=331.23 Aligned_cols=185 Identities=26% Similarity=0.373 Sum_probs=151.4
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEc-CCCCcc-cccH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVP-QDPVLF-HDTI 574 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~-Q~~~LF-~~Ti 574 (816)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 5799999999999999999999999999999999999999999999999987653 346788999997 667777 5699
Q ss_pred HHHHhcCCC--CCCHH----HHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q psy4347 575 LYNINYGDK--SKSYE----ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648 (816)
Q Consensus 575 ~eNi~~~~~--~~~~~----~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~T 648 (816)
+||+.+... ..+.+ ++.++++..++.+. .|+.+ ..||||||||++|||||+.+|++|||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976421 12222 23444455555433 34433 569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEEEc
Q psy4347 649 SSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 649 s~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+....++|+...
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 99999999999999998743 6899999999999887655555543
No 283
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5e-38 Score=328.59 Aligned_cols=194 Identities=29% Similarity=0.411 Sum_probs=160.4
Q ss_pred cceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC----CcceEEECCEeCCCCChHHHhhccEEEcCCCC-cc-c-
Q psy4347 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP----NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPV-LF-H- 571 (816)
Q Consensus 499 vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p----~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~-LF-~- 571 (816)
+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +..++.|+||+|++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998654 233468999999985 34 3
Q ss_pred ccHHHHHhcCC-----CC-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q psy4347 572 DTILYNINYGD-----KS-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645 (816)
Q Consensus 572 ~Ti~eNi~~~~-----~~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLD 645 (816)
.|+.+|+.++. +. ...+++.++++..++.+. ++.......+||||||||++|||||+++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 59999986431 11 112446777777777521 23334455789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 646 EATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 646 E~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
|||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. +| |++++.|+.+++....
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 217 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999998753 7899999999999965 66 9999999998887543
No 284
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.5e-38 Score=328.50 Aligned_cols=183 Identities=30% Similarity=0.393 Sum_probs=152.2
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCccc-ccHHHHH
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH-DTILYNI 578 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~-~Ti~eNi 578 (816)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. .+||+|++.+|. .|+.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999998765432 489999999996 6999999
Q ss_pred hcCC----CCCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC
Q psy4347 579 NYGD----KSKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650 (816)
Q Consensus 579 ~~~~----~~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~ 650 (816)
.++. +..+. +++.++++..++.+...+ ...+||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 8741 22222 235566666676554433 2367999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 651 LDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 651 LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
||+.+.+.+.+.|+++. .++|+|+|||+++.+.. || |++++.|+..++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999998864 37899999999999876 55 666666654444
No 285
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-37 Score=309.63 Aligned_cols=153 Identities=29% Similarity=0.519 Sum_probs=140.4
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~i 560 (816)
|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. +..++.+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 579999999964 579999999999999999999999999999999999999999999999999988776 4567889
Q ss_pred EEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q psy4347 561 AIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640 (816)
Q Consensus 561 ~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~ 640 (816)
+|++| ||||||||++|||||+++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 641 ILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+|||||||++||+.+.+.+.+.|+++. ++.|+|++||++..+....++++..
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 155 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL 155 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999998874 4789999999999887755555544
No 286
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=331.68 Aligned_cols=211 Identities=29% Similarity=0.481 Sum_probs=175.9
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-C----CcceEEECCEeCCCCChHH
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-P----NAGAIYIDGKNINDVDLDS 555 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-p----~~G~I~idG~di~~~~~~~ 555 (816)
++++|++..|.... ...+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996521 2579999999999999999999999999999999999998 4 6799999999999999875
Q ss_pred Hh----hccEEEcCCCCc-cc--ccHHH----HHhcCCCC--C--CHHHHHHHHHHcCChh---HHHhCCCCccccccCC
Q psy4347 556 LR----RHIAIVPQDPVL-FH--DTILY----NINYGDKS--K--SYEETIEAAKLADLHN---SIIKWPNHYETQVGER 617 (816)
Q Consensus 556 lr----~~i~~V~Q~~~L-F~--~Ti~e----Ni~~~~~~--~--~~~~i~~a~~~a~l~~---~I~~LP~GydT~VGE~ 617 (816)
+| +.|++|||||.- |+ .||.+ -+...... . ..+++.++++.+++.+ .+...|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 43 389999999752 22 24444 34332111 1 1356888889999975 456677
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhc-c-------C
Q psy4347 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHL-L-------G 687 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~-d-------g 687 (816)
.+||||||||+.||-||+.+|++||.||||+|||..++++|++.|+++.+ |.|+|+|||++..+... | |
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 79999999999999999999999999999999999999999999998764 89999999999988764 4 9
Q ss_pred eEEEEcChhHHhhcCc
Q psy4347 688 YKAHRKTSTNLVRGNS 703 (816)
Q Consensus 688 ~i~~~g~~~~L~~~~~ 703 (816)
+|||.|+-+++.+...
T Consensus 231 ~iVE~g~~~~i~~~P~ 246 (316)
T COG0444 231 RIVEEGPVEEIFKNPK 246 (316)
T ss_pred EEEEeCCHHHHhcCCC
Confidence 9999999998887654
No 287
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-38 Score=324.68 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~i 560 (816)
++.+|++.+|+. -.+++||||++++||++||+|||||||||++|+|.|+|+|++|+|.++|.||..+++.. .|..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 679999999964 78999999999999999999999999999999999999999999999999999999755 57789
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCC------------CC--CH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCC
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDK------------SK--SY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKL 621 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~------------~~--~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~L 621 (816)
+--||.+.+|. .|+.||+..+.. .. .+ ++..+.++.+++.+. -.+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~-----------a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL-----------ADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-----------hcchhhcC
Confidence 99999999995 599999987622 11 12 334444555555443 33445689
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEEEcChhHHh
Q psy4347 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAHRKTSTNLV 699 (816)
Q Consensus 622 SGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~~g~~~~L~ 699 (816)
|+||+.|+.|||||+.+|++|+||||.++|.+.....+.+.|+++++ +.|+++|.||++.+...++||+....++.+.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999999999874 4899999999999998775554444444444
Q ss_pred hcCch
Q psy4347 700 RGNSS 704 (816)
Q Consensus 700 ~~~~~ 704 (816)
++.+.
T Consensus 231 eG~P~ 235 (250)
T COG0411 231 EGTPE 235 (250)
T ss_pred cCCHH
Confidence 44443
No 288
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=360.89 Aligned_cols=200 Identities=25% Similarity=0.390 Sum_probs=167.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 579999999999999999999999999999999999999999999999999976543 456889
Q ss_pred cEEEcCCCCcccc-cHHHHHhcCCC----C-CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 560 IAIVPQDPVLFHD-TILYNINYGDK----S-KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 560 i~~V~Q~~~LF~~-Ti~eNi~~~~~----~-~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
|+||+|++.+|.. |+.||+.++.. . .+ .+++.++++..++.+.. + ....+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-------D----TPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-------C----CchhhCCHHHHHHH
Confidence 9999999999864 99999998631 1 11 23455566666553322 2 23367999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcC
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKT 694 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~ 694 (816)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. || |+|+..++
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999998864 47899999999999876 45 77665443
No 289
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.8e-38 Score=360.75 Aligned_cols=203 Identities=19% Similarity=0.220 Sum_probs=175.5
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999964 46999999999999999999999999999999999999999999999999887777777788899
Q ss_pred EEcCCCCc---------ccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 562 IVPQDPVL---------FHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 562 ~V~Q~~~L---------F~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
||+|++.+ +..|++||+.++. ...+++.++++..++.+...+.| .+||||||||++||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 147 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALLDRRF-----------KYLSTGETRKTLLC 147 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 99998753 2458999987642 22456778888888866554444 68999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. || |+++..|+.+++..
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998864 47899999999999876 45 88888888777654
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8e-38 Score=364.76 Aligned_cols=209 Identities=28% Similarity=0.481 Sum_probs=174.0
Q ss_pred cEEEEeeEEEeCCC--------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC
Q psy4347 481 SIEFRDVNFSYIDK--------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD 552 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~ 552 (816)
-|+++||+++|+.+ .++++|+||||+|++||++||+||||||||||+|+|+|++ |++|+|.+||.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999621 1357999999999999999999999999999999999998 59999999999998765
Q ss_pred hH---HHhhccEEEcCCC--Cccc-ccHHHHHhcCCC----CCC----HHHHHHHHHHcCCh-hHHHhCCCCccccccCC
Q psy4347 553 LD---SLRRHIAIVPQDP--VLFH-DTILYNINYGDK----SKS----YEETIEAAKLADLH-NSIIKWPNHYETQVGER 617 (816)
Q Consensus 553 ~~---~lr~~i~~V~Q~~--~LF~-~Ti~eNi~~~~~----~~~----~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~ 617 (816)
.. .+|+.|+||||++ .+|. .|++||+.++.. ..+ .+++.++++..++. +...+.|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------- 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP---------- 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC----------
Confidence 43 3477899999997 3774 599999987421 011 23456667777774 3333333
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------C
Q psy4347 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------G 687 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g 687 (816)
.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. || |
T Consensus 424 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 424 -AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred -ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 68999999999999999999999999999999999999999999998743 7899999999999876 55 9
Q ss_pred eEEEEcChhHHhhc
Q psy4347 688 YKAHRKTSTNLVRG 701 (816)
Q Consensus 688 ~i~~~g~~~~L~~~ 701 (816)
+|++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999998888754
No 291
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=360.28 Aligned_cols=201 Identities=23% Similarity=0.362 Sum_probs=167.8
Q ss_pred EEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhccEE
Q psy4347 484 FRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRHIAI 562 (816)
Q Consensus 484 ~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~i~~ 562 (816)
++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999964 579999999999999999999999999999999999999999999999999976654 456788999
Q ss_pred EcCCCCcc-cccHHHHHhcCCC---C--CCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 563 VPQDPVLF-HDTILYNINYGDK---S--KSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 563 V~Q~~~LF-~~Ti~eNi~~~~~---~--~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
|||++.+| ..|++||+.++.. . .+. +++.++++..++. ........+||||||||++||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHH
Confidence 99999887 4699999987632 1 122 2334444444443 223334568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
|||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |+|++.|+.+++
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999998864 47899999999999865 55 999998887765
No 292
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.2e-38 Score=303.51 Aligned_cols=195 Identities=31% Similarity=0.415 Sum_probs=169.8
Q ss_pred cEEEEeeEEEeCCC-cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH---H
Q psy4347 481 SIEFRDVNFSYIDK-HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS---L 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~---l 556 (816)
-|+++++++.-++. ....||++|+|.|++||.+|||||||||||||+-++.|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 48888888887642 2357999999999999999999999999999999999999999999999999999998644 4
Q ss_pred h-hccEEEcCCCCcc-cccHHHHHhcCCC-----CC-CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 557 R-RHIAIVPQDPVLF-HDTILYNINYGDK-----SK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 557 r-~~i~~V~Q~~~LF-~~Ti~eNi~~~~~-----~~-~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
| +++|+|||...|. +.|-.||+..... .+ ..+...+.++.+|+.+-+..+| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 4 5899999999998 7799999987532 11 1234566778888888888888 7999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d 686 (816)
+|||||+...|+||+-||||-+||.+|-.+|.+.+-.+. .|.|.|+|||+.+....|+
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhh
Confidence 999999999999999999999999999999999986543 4789999999999999998
No 293
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-38 Score=326.75 Aligned_cols=182 Identities=29% Similarity=0.480 Sum_probs=161.7
Q ss_pred cEEEEeeEEEeCCCcc------cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH
Q psy4347 481 SIEFRDVNFSYIDKHT------KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD 554 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~------~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~ 554 (816)
-++++|+++.|+.+.. ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3789999999975221 37899999999999999999999999999999999999999999999999988776
Q ss_pred HHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChh-HHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 555 SLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN-SIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~-~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
.....+++.+.++.+|+.+ +..+.| .+||||||||++|||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IAR 122 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIAR 122 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHH
Confidence 1223467999999999965 777888 789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc--------CeEEEEcChhHHhhcCc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL--------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L~~~~~ 703 (816)
||+.+|+++++|||||+||...+++|.+.|.++.+ +.|.++|||+++.++..+ |+|||.|.-+++.+..-
T Consensus 123 ALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred HHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 99999999999999999999999999999987643 789999999999999876 99999999999887543
No 294
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=369.27 Aligned_cols=214 Identities=25% Similarity=0.359 Sum_probs=172.7
Q ss_pred ccEEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC---------
Q psy4347 480 ASIEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN--------- 549 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~--------- 549 (816)
.-|+++||+++|+... +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3599999999996311 247999999999999999999999999999999999999999999999998652
Q ss_pred -CCChH---HHh-hccEEEcCCC--Cccc-ccHHHHHhcCCC---CCC----HHHHHHHHHHcCChhHHHhCCCCccccc
Q psy4347 550 -DVDLD---SLR-RHIAIVPQDP--VLFH-DTILYNINYGDK---SKS----YEETIEAAKLADLHNSIIKWPNHYETQV 614 (816)
Q Consensus 550 -~~~~~---~lr-~~i~~V~Q~~--~LF~-~Ti~eNi~~~~~---~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~V 614 (816)
+.+.. .+| +.||||+|+| .++. .||.|||.++.. ..+ .+++.++++..++.+. +...
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 22222 333 4799999998 5775 599999987421 112 2456667777777421 0112
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChhHHHh-cc-----
Q psy4347 615 GERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-R-NKTTICIAHRLSTIKH-LL----- 686 (816)
Q Consensus 615 GE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~-~~T~i~IaHrls~i~~-~d----- 686 (816)
.....+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. + |+|+|+|||++..+.. ||
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 22336899999999999999999999999999999999999999999999875 3 7999999999999866 55
Q ss_pred --CeEEEEcChhHHhhc
Q psy4347 687 --GYKAHRKTSTNLVRG 701 (816)
Q Consensus 687 --g~i~~~g~~~~L~~~ 701 (816)
|+|++.|+.+++...
T Consensus 243 ~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 243 YQGEAVETGSVEQIFHA 259 (623)
T ss_pred eCCeecccCCHHHhhcC
Confidence 999999998888654
No 295
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=315.93 Aligned_cols=208 Identities=23% Similarity=0.385 Sum_probs=176.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
.+..+|+.++|.. ++|++||||+|++||+|++.||||+||||.+.++.|+..|++|+|.+||.||+.+++ ..-|..
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 5789999999954 789999999999999999999999999999999999999999999999999999998 456778
Q ss_pred cEEEcCCCCcccc-cHHHHHhcCCC----CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 560 IAIVPQDPVLFHD-TILYNINYGDK----SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 560 i~~V~Q~~~LF~~-Ti~eNi~~~~~----~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
|||+||++.+|.+ ||+|||...-+ +.. .+++.+.++..++. ..-...|.+||||||.|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-----------hlr~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-----------HLRDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-----------HHhcCcccccccchHHHHH
Confidence 9999999999955 99999986422 111 11233344444442 2233457899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChh-HHHhcc-------CeEEEEcChhHHhhc
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLS-TIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls-~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|||||..+|+.++||||++++||.+...|++.++.++ +|.-+++.-|+.. |+.-|| |+|...|+.+|+.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998875 4778888899975 566666 999999999999876
Q ss_pred C
Q psy4347 702 N 702 (816)
Q Consensus 702 ~ 702 (816)
.
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 4
No 296
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.7e-37 Score=359.16 Aligned_cols=210 Identities=25% Similarity=0.436 Sum_probs=173.8
Q ss_pred cEEEEeeEEEeCCC-cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCCCChH
Q psy4347 481 SIEFRDVNFSYIDK-HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNINDVDLD 554 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~~~~~ 554 (816)
-|+++||+++|+++ .++++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 125799999999999999999999999999999999999987 799999999999877654
Q ss_pred H---Hh-hccEEEcCCCC--cc-cccHHHHHhcC------CCCC-CHHHHHHHHHHcCChhH---HHhCCCCccccccCC
Q psy4347 555 S---LR-RHIAIVPQDPV--LF-HDTILYNINYG------DKSK-SYEETIEAAKLADLHNS---IIKWPNHYETQVGER 617 (816)
Q Consensus 555 ~---lr-~~i~~V~Q~~~--LF-~~Ti~eNi~~~------~~~~-~~~~i~~a~~~a~l~~~---I~~LP~GydT~VGE~ 617 (816)
. +| +.||||||++. ++ ..|+.+|+.++ .+.. ..+++.++++..++.+. ..+.|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~---------- 154 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP---------- 154 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC----------
Confidence 3 34 57999999985 44 35899998642 1111 12456777788887542 23333
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------C
Q psy4347 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------G 687 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g 687 (816)
.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||++..+.. || |
T Consensus 155 -~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 155 -HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred -cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 6899999999999999999999999999999999999999999998864 37999999999999875 55 9
Q ss_pred eEEEEcChhHHhhc
Q psy4347 688 YKAHRKTSTNLVRG 701 (816)
Q Consensus 688 ~i~~~g~~~~L~~~ 701 (816)
+|++.|+.+++...
T Consensus 234 ~i~~~g~~~~~~~~ 247 (529)
T PRK15134 234 RCVEQNRAATLFSA 247 (529)
T ss_pred EEEEeCCHHHHhhC
Confidence 99999998888654
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.3e-37 Score=357.18 Aligned_cols=203 Identities=22% Similarity=0.386 Sum_probs=167.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC--CcceEEECCEeCCCCChHH-Hhh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP--NAGAIYIDGKNINDVDLDS-LRR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p--~~G~I~idG~di~~~~~~~-lr~ 558 (816)
|+++||+++|++ .++|+||||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999954 5799999999999999999999999999999999999987 7999999999998777544 467
Q ss_pred ccEEEcCCCCccc-ccHHHHHhcCCCC------CCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 559 HIAIVPQDPVLFH-DTILYNINYGDKS------KSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 559 ~i~~V~Q~~~LF~-~Ti~eNi~~~~~~------~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
.|+||||++.+|. .|++||+.++... .+. +++.++++..++.+... +.. ..+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~----~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV------TRP----VGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc------cCc----hhhCCHHHHH
Confidence 8999999998885 5999999876321 111 23445555555532211 122 3579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. || |+++..|+.++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9999999999999999999999999999999999998863 47899999999999876 55 77777766543
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.9e-37 Score=359.37 Aligned_cols=209 Identities=25% Similarity=0.418 Sum_probs=169.0
Q ss_pred cEEEEeeEEEeCC--CcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEEC-CEe---CCCCC--
Q psy4347 481 SIEFRDVNFSYID--KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID-GKN---INDVD-- 552 (816)
Q Consensus 481 ~I~~~~vsf~Y~~--~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~id-G~d---i~~~~-- 552 (816)
-|+++||+++|++ +.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999952 113579999999999999999999999999999999999999999999996 643 33332
Q ss_pred -hHHHhhccEEEcCCCCccc-ccHHHHHhcCC----CCC-CHHHHHHHHHHcCChh-----HHHhCCCCccccccCCCCC
Q psy4347 553 -LDSLRRHIAIVPQDPVLFH-DTILYNINYGD----KSK-SYEETIEAAKLADLHN-----SIIKWPNHYETQVGERGLK 620 (816)
Q Consensus 553 -~~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~----~~~-~~~~i~~a~~~a~l~~-----~I~~LP~GydT~VGE~G~~ 620 (816)
...+|+.|+||||++.+|. .|+.||+.++. +.. ..+++.++++..++.+ +..+ ...+
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------~~~~ 427 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK-----------YPDE 427 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhC-----------Chhh
Confidence 2346778999999998885 59999998631 111 1234566677777643 2222 2367
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEE
Q psy4347 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKA 690 (816)
Q Consensus 621 LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~ 690 (816)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+.. || |+++
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 27899999999999876 45 7777
Q ss_pred EEcChhHHhh
Q psy4347 691 HRKTSTNLVR 700 (816)
Q Consensus 691 ~~g~~~~L~~ 700 (816)
+.|+.+++.+
T Consensus 508 ~~g~~~~~~~ 517 (520)
T TIGR03269 508 KIGDPEEIVE 517 (520)
T ss_pred EECCHHHHHh
Confidence 7777666543
No 299
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-37 Score=358.47 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=164.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-CCcceEEECCEeCCCCCh-HHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-PNAGAIYIDGKNINDVDL-DSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-p~~G~I~idG~di~~~~~-~~lr~ 558 (816)
.|+++||++.|+.+++.++|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4999999999953113579999999999999999999999999999999999999 599999999999875543 45677
Q ss_pred ccEEEcCCC---Ccc-cccHHHHHhcCCC----C---CCH----HHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCC
Q psy4347 559 HIAIVPQDP---VLF-HDTILYNINYGDK----S---KSY----EETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 559 ~i~~V~Q~~---~LF-~~Ti~eNi~~~~~----~---~~~----~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LS 622 (816)
.|+||+|++ .+| ..|+.||+.++.. . .+. +++.++++..++. +. ......+||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LS 407 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTAS-----------PELAIARLS 407 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCC-----------cccccccCC
Confidence 899999996 366 4699999986521 0 111 2344444555442 12 223336899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEc
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRK 693 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g 693 (816)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. || |+|+..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999998763 47999999999999877 44 6666555
Q ss_pred ChhH
Q psy4347 694 TSTN 697 (816)
Q Consensus 694 ~~~~ 697 (816)
+.++
T Consensus 488 ~~~~ 491 (506)
T PRK13549 488 INHN 491 (506)
T ss_pred cccc
Confidence 5444
No 300
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.4e-37 Score=348.58 Aligned_cols=215 Identities=26% Similarity=0.424 Sum_probs=182.3
Q ss_pred cEEEEeeEEEeCCCcc-cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC----cceEEECCEeCCCCChHH
Q psy4347 481 SIEFRDVNFSYIDKHT-KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN----AGAIYIDGKNINDVDLDS 555 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~----~G~I~idG~di~~~~~~~ 555 (816)
-++++|++..|....+ .++++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999965322 36999999999999999999999999999999999999988 899999999999988766
Q ss_pred Hh----hccEEEcCCCC-ccc--ccHHHHHh----cCCC---CCCHHHHHHHHHHcCChhHHHh--CCCCccccccCCCC
Q psy4347 556 LR----RHIAIVPQDPV-LFH--DTILYNIN----YGDK---SKSYEETIEAAKLADLHNSIIK--WPNHYETQVGERGL 619 (816)
Q Consensus 556 lr----~~i~~V~Q~~~-LF~--~Ti~eNi~----~~~~---~~~~~~i~~a~~~a~l~~~I~~--LP~GydT~VGE~G~ 619 (816)
.| +.|+||||+|. .|+ .||.+-|+ .... ....+++.+.++.+++.+-... .| .
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-----------h 153 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-----------H 153 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-----------c
Confidence 54 47999999975 554 36666554 2221 1134567888899999776655 66 7
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhc-c-------CeE
Q psy4347 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHL-L-------GYK 689 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~-d-------g~i 689 (816)
+||||||||+.||+||+.||++||+||||.+||+.++++|++.|+++. .|.++|+|||++..+... | |+|
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 899999999999999999999999999999999999999999999875 589999999999999775 4 999
Q ss_pred EEEcChhHHhhcCchhh
Q psy4347 690 AHRKTSTNLVRGNSSAM 706 (816)
Q Consensus 690 ~~~g~~~~L~~~~~~~~ 706 (816)
||.|+-+++.++....|
T Consensus 234 VE~G~~~~i~~~p~hpY 250 (539)
T COG1123 234 VETGPTEEILSNPQHPY 250 (539)
T ss_pred EEecCHHHHHhccCCcc
Confidence 99999999998765444
No 301
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.5e-37 Score=320.99 Aligned_cols=180 Identities=23% Similarity=0.352 Sum_probs=153.2
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCc---ccccHHHHHhcC
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVL---FHDTILYNINYG 581 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L---F~~Ti~eNi~~~ 581 (816)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..++.++||||++.+ |+.|+.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 357789999999877 457999999875
Q ss_pred C---------CC-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCC
Q psy4347 582 D---------KS-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651 (816)
Q Consensus 582 ~---------~~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~L 651 (816)
. +. ..++++.++++..++.++..+.| .+||||||||++|||||+++|++|||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----------GELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 2 11 12345778888888876554333 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc------CeEEEEcChhHHhh
Q psy4347 652 DSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL------GYKAHRKTSTNLVR 700 (816)
Q Consensus 652 D~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d------g~i~~~g~~~~L~~ 700 (816)
|+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+.+++.+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHHhcC
Confidence 9999999999999864 47899999999998865 55 88888888777655
No 302
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.1e-37 Score=358.07 Aligned_cols=205 Identities=28% Similarity=0.439 Sum_probs=168.7
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC--CCCcceEEEC---------------
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF--EPNAGAIYID--------------- 544 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~--~p~~G~I~id--------------- 544 (816)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999953 57999999999999999999999999999999999996 7999999997
Q ss_pred --------CEeCC-------CCC---hHHHhhccEEEcCC-CCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcC
Q psy4347 545 --------GKNIN-------DVD---LDSLRRHIAIVPQD-PVLFH-DTILYNINYGDK--SKS----YEETIEAAKLAD 598 (816)
Q Consensus 545 --------G~di~-------~~~---~~~lr~~i~~V~Q~-~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~ 598 (816)
|.++. ..+ ...+|+.++||||+ +.+|. .|++||+.++.. ..+ .+++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 13467889999998 67875 599999986421 111 245666777777
Q ss_pred ChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEe
Q psy4347 599 LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIA 676 (816)
Q Consensus 599 l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~Ia 676 (816)
+.+...+.| .+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+||
T Consensus 158 l~~~~~~~~-----------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHIA-----------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred ChhhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 766554433 6899999999999999999999999999999999999999999998873 378999999
Q ss_pred cChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 677 HRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 677 Hrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|+++.+.. || |+++..|+.+++..
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999875 55 88888888877654
No 303
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.4e-37 Score=364.59 Aligned_cols=194 Identities=24% Similarity=0.367 Sum_probs=164.4
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC--cceEEECCEeCCCCChHHHhhccEEEcCCCCccc-c
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN--AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH-D 572 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~--~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~-~ 572 (816)
++++|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.+||+++.. ..++++|||+|++.+|. .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcC
Confidence 357999999999999999999999999999999999999986 9999999998742 45678999999999995 5
Q ss_pred cHHHHHhcCC----C-CCCHHH----HHHHHHHcCChhHHHhCCCCccccccCC-CCCCChhHHHHHHHHHHhccCCCEE
Q psy4347 573 TILYNINYGD----K-SKSYEE----TIEAAKLADLHNSIIKWPNHYETQVGER-GLKLSGGEKQRVAIARAILKNTPIL 642 (816)
Q Consensus 573 Ti~eNi~~~~----~-~~~~~~----i~~a~~~a~l~~~I~~LP~GydT~VGE~-G~~LSGGqrQRiaiARAll~~p~iL 642 (816)
|++||+.++. + ..++++ +.+.++..+ |++..||.||+. ...||||||||++|||||+.+|+||
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 9999998752 2 223333 333333333 344569999864 6789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhH-H-Hhcc-------CeEEEEcChhHHhh
Q psy4347 643 VFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLST-I-KHLL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 643 iLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~-i-~~~d-------g~i~~~g~~~~L~~ 700 (816)
+|||||++||+.++..+.+.|+++. +|+|+|+++|+++. + ..+| |+++..|+++++.+
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999999875 58999999999984 4 4566 99999999999864
No 304
>KOG0060|consensus
Probab=100.00 E-value=5.1e-34 Score=318.88 Aligned_cols=345 Identities=21% Similarity=0.252 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHH
Q psy4347 309 VNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLN 388 (816)
Q Consensus 309 ~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 388 (816)
-+.++.+++..-.-.+...|.+.|-.|+.++.|...-....+...+...+. ......+.
T Consensus 255 ~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l---------------------~~~r~~l~ 313 (659)
T KOG0060|consen 255 VEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLREL---------------------MSFRFWLG 313 (659)
T ss_pred HHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Confidence 344455555555556777799999999999999877777666665544443 11222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4347 389 FGQSAIFSTAMTLSMIFAAREI----AHGNLTVGDLVMVNG----LLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLK 460 (816)
Q Consensus 389 ~~~~~i~~l~~~~vl~~G~~lV----~~G~ltvG~lvaf~~----~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~ 460 (816)
++.+++-.++.++-+++-+.-+ ..+.++..++...+. ++..+...+..+.....++.+..+-..||-|+++.
T Consensus 314 f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~ 393 (659)
T KOG0060|consen 314 FIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEV 393 (659)
T ss_pred HHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Confidence 4444444444333222111111 345677777664433 23344555666666677777777788888777653
Q ss_pred Ccccc--------------cccc---CCc--cccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCC
Q psy4347 461 EPTIK--------------NKAN---ALP--LVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGS 521 (816)
Q Consensus 461 ~~e~~--------------~~~~---~~~--~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGs 521 (816)
-.+.. +... ..+ ....+.+..|+|++|++.=|++ +..+++|+||+|+.|+.+-|.|||||
T Consensus 394 l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~ 472 (659)
T KOG0060|consen 394 LDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGC 472 (659)
T ss_pred HHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCC
Confidence 11100 0000 000 0011123469999999998873 55677889999999999999999999
Q ss_pred chhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC-------CCCCHHHHHHHH
Q psy4347 522 GKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD-------KSKSYEETIEAA 594 (816)
Q Consensus 522 GKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~-------~~~~~~~i~~a~ 594 (816)
|||+|++.|.|+++-.+|.+.--...-. +.+-||||.|+.=.||+||-+-|.. ..++++++.+.+
T Consensus 473 GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~L 544 (659)
T KOG0060|consen 473 GKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRIL 544 (659)
T ss_pred chhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHH
Confidence 9999999999999999999875432111 4478999999999999999999972 246889999999
Q ss_pred HHcCChhHHHhCCCCcccccc-CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy4347 595 KLADLHNSIIKWPNHYETQVG-ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTI 673 (816)
Q Consensus 595 ~~a~l~~~I~~LP~GydT~VG-E~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i 673 (816)
+.+++.+-. ..-+|+|+++- |=...||+||+||+|.||-++.+|++-||||+|||+|.+.|..+.+.+++. |.|.|
T Consensus 545 e~v~L~hl~-~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~i 621 (659)
T KOG0060|consen 545 ENVQLGHLL-EREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFI 621 (659)
T ss_pred HHhhhhhHH-HHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEE
Confidence 999997754 45679998876 456799999999999999999999999999999999999999999999887 89999
Q ss_pred EEecChhHHHhcc
Q psy4347 674 CIAHRLSTIKHLL 686 (816)
Q Consensus 674 ~IaHrls~i~~~d 686 (816)
-|.||-|.-+.-|
T Consensus 622 SVgHRkSL~kfHd 634 (659)
T KOG0060|consen 622 SVGHRKSLWKFHD 634 (659)
T ss_pred EeccHHHHHhhhh
Confidence 9999999988876
No 305
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=361.29 Aligned_cols=208 Identities=28% Similarity=0.425 Sum_probs=178.9
Q ss_pred cEEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH---
Q psy4347 481 SIEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL--- 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l--- 556 (816)
.|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996411 2579999999999999999999999999999999999999999999999999999887654
Q ss_pred -hhccEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 557 -RRHIAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 557 -r~~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
|+.++||+|++.+|. .|+.||+.++.. ..+ ++++.+.++..++.+.+.+.| .+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----------~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP-----------SQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc-----------ccCCHHHHHH
Confidence 578999999999995 599999986421 111 234455566666655544443 6899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-------CeEEEEcChhHHh
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~ 699 (816)
++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..|| |++++.|+.++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998874 4799999999999998888 9999999999876
No 306
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-37 Score=305.28 Aligned_cols=188 Identities=27% Similarity=0.463 Sum_probs=160.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
+..++++.+|+.. ..++|+|+|++|.+||.++++||||||||||+|+++||.+|+.|+|.+||.+|..-..+ =|
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 5678899999763 35699999999999999999999999999999999999999999999999999875544 39
Q ss_pred EEcCCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
+|+|++.|+. .|+.||+.||-. ..+. +...+.+..+|+.++=.+.+ .+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----------~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI-----------WQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce-----------EeecchHHHHHHHHHH
Confidence 9999999994 699999999842 2222 33455667778877655554 7899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d 686 (816)
|..+|+.|+||||.+|||+-|.+++++.|-++. .|+-+++|||+++..--..
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfla 200 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhh
Confidence 999999999999999999999999999987754 4899999999998875543
No 307
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=327.37 Aligned_cols=213 Identities=29% Similarity=0.464 Sum_probs=182.3
Q ss_pred ccEEEEeeEEEeCCCc--------ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC
Q psy4347 480 ASIEFRDVNFSYIDKH--------TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV 551 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~ 551 (816)
.-++.+||...||-++ ...+++||||++++||+++|||+||||||||-..|+|+.+++ |+|.++|+|+..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 4589999999996421 135899999999999999999999999999999999999877 9999999999998
Q ss_pred ChHH---HhhccEEEcCCCC--cc-cccHHHHHhcC----CCCCC----HHHHHHHHHHcCChhHH-HhCCCCccccccC
Q psy4347 552 DLDS---LRRHIAIVPQDPV--LF-HDTILYNINYG----DKSKS----YEETIEAAKLADLHNSI-IKWPNHYETQVGE 616 (816)
Q Consensus 552 ~~~~---lr~~i~~V~Q~~~--LF-~~Ti~eNi~~~----~~~~~----~~~i~~a~~~a~l~~~I-~~LP~GydT~VGE 616 (816)
+.+. +|+.+-+|||||+ |- ..||.+-|.-| .|..+ ++.+.+|++.+|++.-. .+.|
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP--------- 424 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP--------- 424 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------
Confidence 7654 7899999999997 33 45888777655 33333 46789999999997654 4577
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc--------
Q psy4347 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL-------- 686 (816)
Q Consensus 617 ~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d-------- 686 (816)
..+|||||||||||||++-+|++++|||||||||..-..+|.+.|+++. .+-+-++|+|+|..++..+
T Consensus 425 --hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 425 --HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred --cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 7899999999999999999999999999999999999999999998863 4789999999999999865
Q ss_pred CeEEEEcChhHHhhcCch
Q psy4347 687 GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 687 g~i~~~g~~~~L~~~~~~ 704 (816)
|+|||+|.-+++.++...
T Consensus 503 GkiVE~G~~~~if~~P~~ 520 (534)
T COG4172 503 GKIVEQGPTEAVFANPQH 520 (534)
T ss_pred CEEeeeCCHHHHhcCCCc
Confidence 999999998888876543
No 308
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-36 Score=340.83 Aligned_cols=197 Identities=27% Similarity=0.404 Sum_probs=169.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
-++++|++++|++ .++|+||||++.+||++|++|+||||||||+|.|+|.|+|++|+|.+||.++.-.++ +.....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4899999999975 789999999999999999999999999999999999999999999999999987777 556678
Q ss_pred cEEEcCCCCcc-cccHHHHHhcCCCCC------CHHHHH----HHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 560 IAIVPQDPVLF-HDTILYNINYGDKSK------SYEETI----EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 560 i~~V~Q~~~LF-~~Ti~eNi~~~~~~~------~~~~i~----~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
|+.|+||..|+ +.||.|||.+|+... +..++. ++++..++. ...|++|+ +||+||||.
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v~----~LsiaqrQ~ 153 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLVG----DLSIAQRQM 153 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhhh----hCCHHHHHH
Confidence 99999999999 569999999987532 233333 333334442 12577776 599999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEE
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
|+|||||..+++|||||||||+|+....+.+++.+++++ +|.++|+|||||+.+...+++|+.
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritV 217 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITV 217 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEE
Confidence 999999999999999999999999999999999999975 689999999999999887644443
No 309
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.2e-36 Score=317.37 Aligned_cols=186 Identities=24% Similarity=0.300 Sum_probs=147.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
+.++|++.+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... ...++
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG 94 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc
Confidence 677888888854 6799999999999999999999999999999999999999999999999986421 11111
Q ss_pred EEcCCCCcccccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 562 IVPQDPVLFHDTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
+..+.|++||+.++.. ..+. +++.++++..++.+.. ++.+ .+||||||||++|||||
T Consensus 95 ------~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~laral 157 (224)
T cd03220 95 ------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------DLPV----KTYSSGMKARLAFAIAT 157 (224)
T ss_pred ------CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-------hCCh----hhCCHHHHHHHHHHHHH
Confidence 1235799999987532 1122 2344555555554433 3333 57999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 636 LKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+....++++..
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 215 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999998864 4689999999999987654455443
No 310
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=353.60 Aligned_cols=195 Identities=21% Similarity=0.345 Sum_probs=159.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
.|+++||++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999999762 38999999999999999999999999999999999999999999999999876544 456788
Q ss_pred cEEEcCCC---Cccc-ccHHHHHhcCCCC-----------CC----HHHHHHHHHHcCCh-hHHHhCCCCccccccCCCC
Q psy4347 560 IAIVPQDP---VLFH-DTILYNINYGDKS-----------KS----YEETIEAAKLADLH-NSIIKWPNHYETQVGERGL 619 (816)
Q Consensus 560 i~~V~Q~~---~LF~-~Ti~eNi~~~~~~-----------~~----~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~ 619 (816)
|+||||++ .+|. .|++||+.++... .+ .+++.++++..++. +. .++.+ .
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~----~ 408 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS-------VNQNI----T 408 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCC-------ccCcc----c
Confidence 99999984 5775 5999999875310 01 12344555555553 22 23333 5
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhccCeEEE
Q psy4347 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
+||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++ .+|.|+|+|||++..+...+++|+.
T Consensus 409 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~ 481 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAV 481 (510)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEE
Confidence 79999999999999999999999999999999999999999999886 3478999999999988765434433
No 311
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.6e-37 Score=364.07 Aligned_cols=210 Identities=26% Similarity=0.369 Sum_probs=174.1
Q ss_pred ccEEEEeeEEEeCCC------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC---cceEEECCEeCCC
Q psy4347 480 ASIEFRDVNFSYIDK------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNIND 550 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~---~G~I~idG~di~~ 550 (816)
.+++|.++. +++.. .++++|+|+|++|++||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~- 93 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID- 93 (617)
T ss_pred ccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-
Confidence 356777776 55321 2578999999999999999999999999999999999999885 899999999875
Q ss_pred CChHHHhhccEEEcCCCCccc-ccHHHHHhcCCC-----CCCHHH----HHHHHHHcCChhHHHhCCCCccccccCC--C
Q psy4347 551 VDLDSLRRHIAIVPQDPVLFH-DTILYNINYGDK-----SKSYEE----TIEAAKLADLHNSIIKWPNHYETQVGER--G 618 (816)
Q Consensus 551 ~~~~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~-----~~~~~~----i~~a~~~a~l~~~I~~LP~GydT~VGE~--G 618 (816)
...+|+.+|||+|++.+|. .||+|||.|+.. ..+.++ +.+.++..+ |++..||.||+. +
T Consensus 94 --~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~ 164 (617)
T TIGR00955 94 --AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCANTRIGVPGRV 164 (617)
T ss_pred --HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------chhcCcCccCCCCCC
Confidence 4578899999999999994 599999987532 112222 333333333 455789999985 4
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChh-H-HHhcc-------Ce
Q psy4347 619 LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLS-T-IKHLL-------GY 688 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls-~-i~~~d-------g~ 688 (816)
..||||||||++|||||+.+|++|+||||||+||+.+...+.+.|+++. +|+|+|+++|+++ . ...+| |+
T Consensus 165 ~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~ 244 (617)
T TIGR00955 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGR 244 (617)
T ss_pred CCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCe
Confidence 7899999999999999999999999999999999999999999999875 4899999999996 3 45666 99
Q ss_pred EEEEcChhHHhh
Q psy4347 689 KAHRKTSTNLVR 700 (816)
Q Consensus 689 i~~~g~~~~L~~ 700 (816)
++..|+.+++.+
T Consensus 245 ~v~~G~~~~~~~ 256 (617)
T TIGR00955 245 VAYLGSPDQAVP 256 (617)
T ss_pred EEEECCHHHHHH
Confidence 999999998853
No 312
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-36 Score=320.13 Aligned_cols=200 Identities=22% Similarity=0.286 Sum_probs=162.4
Q ss_pred cEEEEeeEEEeCCC-----------------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEE
Q psy4347 481 SIEFRDVNFSYIDK-----------------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI 543 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~-----------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~i 543 (816)
.|+++||+..|... ..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47777776666331 1346899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCChHHHhhccEEEcCCCCcc-cccHHHHHhcCC--CCCCHHHH----HHHHHHcCChhHHHhCCCCccccccC
Q psy4347 544 DGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGD--KSKSYEET----IEAAKLADLHNSIIKWPNHYETQVGE 616 (816)
Q Consensus 544 dG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~--~~~~~~~i----~~a~~~a~l~~~I~~LP~GydT~VGE 616 (816)
||. +++++|++.++ ..|+.||+.++. ...+.++. .++++..++.+++..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------- 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ----------- 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------
Confidence 995 46778887776 459999998642 12233333 344555566554433
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------C
Q psy4347 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------G 687 (816)
Q Consensus 617 ~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g 687 (816)
...+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||++..+.. || |
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 346899999999999999999999999999999999999999999998764 47899999999999876 55 9
Q ss_pred eEEEEcChhHHhhcCch
Q psy4347 688 YKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 688 ~i~~~g~~~~L~~~~~~ 704 (816)
+|++.|+.+++.+....
T Consensus 220 ~i~~~g~~~~~~~~~~~ 236 (264)
T PRK13546 220 KLKDYGELDDVLPKYEA 236 (264)
T ss_pred EEEEeCCHHHHHHHhHH
Confidence 99999998888776443
No 313
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.2e-36 Score=384.26 Aligned_cols=213 Identities=23% Similarity=0.358 Sum_probs=184.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||++.|++ +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~-~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecC-CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 46999999999963 24679999999999999999999999999999999999999999999999999975 56678999
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
||||||++.+|. .|++|||.++.. ..+ .+++.+.++..++.+...+ ...+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~-----------~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE-----------EAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 999999999995 599999987421 111 2456677777777654433 3368999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCch
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~~ 704 (816)
|||+.+|++||||||||+||+.+.+.+.+.|+++.+|+|+|++||+++.+.. || |+++..|+.++|.++-+.
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~ 1153 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGT 1153 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCC
Confidence 9999999999999999999999999999999998789999999999999875 55 999999999999776443
Q ss_pred h
Q psy4347 705 A 705 (816)
Q Consensus 705 ~ 705 (816)
.
T Consensus 1154 g 1154 (2272)
T TIGR01257 1154 G 1154 (2272)
T ss_pred c
Confidence 3
No 314
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=291.15 Aligned_cols=204 Identities=28% Similarity=0.464 Sum_probs=177.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCE--eCCCCC----hH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK--NINDVD----LD 554 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~--di~~~~----~~ 554 (816)
.|+++|++|.|+. ..+|-||+|+.+.||++.+.||||+|||||++.|.=+--|.+|+..|.|. |..+.. ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4899999999965 57999999999999999999999999999999999999999999999886 333322 36
Q ss_pred HHhhccEEEcCCCCcc-cccHHHHHhcCCC---CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 555 SLRRHIAIVPQDPVLF-HDTILYNINYGDK---SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~---~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
.+|+.+|+|+|...|+ +.||.||+--... ..+ ..+..+.++...+.++-+++| ..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 7899999999999999 6699999963310 112 234567778889999999999 78999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHhcc--------CeEEEEcChhH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKHLL--------GYKAHRKTSTN 697 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~ 697 (816)
||+||||||+.+|++|++||||++|||+-..+|.+.|+++.. |.|-++|||.....+... |+|||+|++.-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999999999999999999999999754 899999999999988765 99999999865
Q ss_pred H
Q psy4347 698 L 698 (816)
Q Consensus 698 L 698 (816)
.
T Consensus 228 f 228 (242)
T COG4161 228 F 228 (242)
T ss_pred c
Confidence 4
No 315
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3e-36 Score=349.18 Aligned_cols=201 Identities=19% Similarity=0.308 Sum_probs=161.6
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-CcceEEECCEeCCCCCh-HHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIYIDGKNINDVDL-DSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-~~G~I~idG~di~~~~~-~~lr~ 558 (816)
-|+++|++++|+.+++.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999431135799999999999999999999999999999999999996 89999999999875443 56788
Q ss_pred ccEEEcCCC---Cccc-ccHHHHHhcCCC-------CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCCh
Q psy4347 559 HIAIVPQDP---VLFH-DTILYNINYGDK-------SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 559 ~i~~V~Q~~---~LF~-~Ti~eNi~~~~~-------~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG 623 (816)
+|+||||++ .+|. .|++||+.++.. ... .+++.++++..++.+. -.+.. ...|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~----~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPFLP----IGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------CccCc----cccCCH
Confidence 999999996 4664 699999987521 011 1234555555554210 11222 357999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEE
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|+|||+++.+...+.+++.
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~ 475 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLV 475 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999998863 478999999999999875544433
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.4e-34 Score=364.75 Aligned_cols=212 Identities=15% Similarity=0.221 Sum_probs=181.6
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||++.|++ .++++|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.+ +....|+.
T Consensus 1936 ~~L~v~nLsK~Y~~-~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECC-CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 35999999999964 23679999999999999999999999999999999999999999999999999965 45667889
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK--SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
|||+||++.++. .|++||+.+... ..+. +.+.++++..++.+...+.+ ..||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999995 599999976311 1122 33456677778876654443 67999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
|||+.+|+||||||||++||+.+.+.+.+.|+++ .+|+|+|++||+++.+.. || |+++..|+.++|..+-+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 9999999999999999999999999999999886 458999999999999976 45 99999999999977655
Q ss_pred h
Q psy4347 704 S 704 (816)
Q Consensus 704 ~ 704 (816)
.
T Consensus 2163 ~ 2163 (2272)
T TIGR01257 2163 D 2163 (2272)
T ss_pred C
Confidence 3
No 317
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=7.7e-36 Score=330.38 Aligned_cols=192 Identities=27% Similarity=0.468 Sum_probs=166.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
.|++++++++||. ..+++||||+|++||+.||.|+||+|||||+++|.|+|+|++|+|++||++++=-++ +..|..
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4899999999974 789999999999999999999999999999999999999999999999999987666 678889
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCCCC-----CH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDKSK-----SY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~~~-----~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
||+|.|++.|++ -|+.|||.+|.+.. +. +++.+.++.-|+ |--.|..| ..||-||||||
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl-------~vdp~~~V----~dLsVG~qQRV 149 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGL-------PVDPDAKV----ADLSVGEQQRV 149 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCC-------CCCcccee----ecCCcchhHHH
Confidence 999999999995 59999999997632 22 334444444443 33344444 46999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d 686 (816)
.|-+||+++|++||||||||-|-|.....+++.++++. .|+|+|+|||++..++..+
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ia 207 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIA 207 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhh
Confidence 99999999999999999999999999999999999864 5899999999999998844
No 318
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=336.87 Aligned_cols=201 Identities=27% Similarity=0.322 Sum_probs=165.7
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..++++|++|+|+++..+++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------- 88 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-----------
Confidence 358999999999763235799999999999999999999999999999999999999999999999752
Q ss_pred cEEEcCCCCcc-cccHHHHHhcCC--CCCCHH----HHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDPVLF-HDTILYNINYGD--KSKSYE----ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~~LF-~~Ti~eNi~~~~--~~~~~~----~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
++.+.+.++ ..|++||+.++. ...+.+ .+.++++..++.+++.+.| ..||||||||++||
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~-----------~~LSGGQrQRVaLA 155 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV-----------KTYSSGMKSRLGFA 155 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 122334444 359999998642 122333 3445677778876655433 68999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+++++...-.
T Consensus 156 rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 99999999999999999999999999999998864 47899999999999866 66 99999999999887644
Q ss_pred h
Q psy4347 704 S 704 (816)
Q Consensus 704 ~ 704 (816)
.
T Consensus 236 ~ 236 (549)
T PRK13545 236 E 236 (549)
T ss_pred H
Confidence 3
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-36 Score=320.28 Aligned_cols=193 Identities=24% Similarity=0.305 Sum_probs=153.2
Q ss_pred EeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEE-----------ECCEeCCCCCh
Q psy4347 485 RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY-----------IDGKNINDVDL 553 (816)
Q Consensus 485 ~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~-----------idG~di~~~~~ 553 (816)
.||+|+|++ ..++|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. +||+++.+...
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 378999965 3469999995 999999999999999999999999999999999996 88998876643
Q ss_pred HHHhh--ccEEEcCCCCcccccHHHHHhcCCCCC-CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 554 DSLRR--HIAIVPQDPVLFHDTILYNINYGDKSK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 554 ~~lr~--~i~~V~Q~~~LF~~Ti~eNi~~~~~~~-~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
...|. .+++++|++.++..++.+|+...-... ..+++.++++..++.+.. .....+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL-----------DRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 33332 478888887766555555554321111 235566777776665443 3445789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEE
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
|||||+.+|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+....++|+.
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~ 211 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHC 211 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999999998875 379999999999999864444433
No 320
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-35 Score=314.60 Aligned_cols=179 Identities=24% Similarity=0.319 Sum_probs=148.7
Q ss_pred EEeCCCcccccceeeeEEee-----CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEE
Q psy4347 489 FSYIDKHTKRIFSNLNFTIP-----AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563 (816)
Q Consensus 489 f~Y~~~~~~~vL~~isl~i~-----~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V 563 (816)
|+|++ ..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 67875 4568999999997 68999999999999999999999999999999999994 58999
Q ss_pred cCCCCc-ccccHHHHHhcCCCCC--CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q psy4347 564 PQDPVL-FHDTILYNINYGDKSK--SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640 (816)
Q Consensus 564 ~Q~~~L-F~~Ti~eNi~~~~~~~--~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~ 640 (816)
+|++.+ |+.|++||+.+..... ..+...++++..++.+... ....+||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 5889999997653211 1233455666666654332 3346899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 641 ILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
++||||||++||+.+...+.+.|+++. .++|+|+|||++..+....++|+..
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l 189 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF 189 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999874 3799999999999998755565544
No 321
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.8e-36 Score=378.18 Aligned_cols=206 Identities=23% Similarity=0.371 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCC-cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC---CCcceEEECCEeCCCCChHHH
Q psy4347 481 SIEFRDVNFSYIDK-HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE---PNAGAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~---p~~G~I~idG~di~~~~~~~l 556 (816)
.++++||++.|+.+ .++++|+|||++|++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999621 24679999999999999999999999999999999999998 78999999999984 257
Q ss_pred hhccEEEcCCCCcc-cccHHHHHhcCC----C-CCCH----HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 557 RRHIAIVPQDPVLF-HDTILYNINYGD----K-SKSY----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 557 r~~i~~V~Q~~~LF-~~Ti~eNi~~~~----~-~~~~----~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
|+.+|||+|++.++ ..||+||+.++. | ..++ +.+.++++..++.+ -.|+.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 89999999987655 679999999752 2 1232 23556666666643 469999999999999999
Q ss_pred HHHHHHHHhccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHH--Hhcc-------C-eEEEEcC
Q psy4347 627 QRVAIARAILKNTP-ILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTI--KHLL-------G-YKAHRKT 694 (816)
Q Consensus 627 QRiaiARAll~~p~-iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i--~~~d-------g-~i~~~g~ 694 (816)
||++|||||+.+|+ ||+||||||+||+.+...|.+.|+++ .+|+|+|+++|+++.. ..+| | ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999974 4566 5 9999998
Q ss_pred hhH
Q psy4347 695 STN 697 (816)
Q Consensus 695 ~~~ 697 (816)
..+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 643
No 322
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=344.71 Aligned_cols=198 Identities=19% Similarity=0.327 Sum_probs=159.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
.|+++||++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999973 36999999999999999999999999999999999999999999999999987665 346788
Q ss_pred cEEEcCCC---Ccc-cccHHHHHhcCCCC--------CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCCh
Q psy4347 560 IAIVPQDP---VLF-HDTILYNINYGDKS--------KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 560 i~~V~Q~~---~LF-~~Ti~eNi~~~~~~--------~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG 623 (816)
||||||++ .+| ..|++||+.++... .+ .+++.++++..++.+ .........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT----------PSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC----------CCccCchhhCCH
Confidence 99999997 455 56999999874210 11 123444444444420 112334467999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc--------CeEEEEcC
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL--------GYKAHRKT 694 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d--------g~i~~~g~ 694 (816)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||++..+...+ |+|+..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998864 4789999999999987754 55555554
Q ss_pred hh
Q psy4347 695 ST 696 (816)
Q Consensus 695 ~~ 696 (816)
.+
T Consensus 479 ~~ 480 (501)
T PRK10762 479 RE 480 (501)
T ss_pred cc
Confidence 33
No 323
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-36 Score=345.05 Aligned_cols=199 Identities=22% Similarity=0.389 Sum_probs=160.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
.++++||++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ...|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999731 48999999999999999999999999999999999999999999999999875443 456789
Q ss_pred cEEEcCCCC---cc-cccHHHHHhcCCCC---------CC---HHHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCC
Q psy4347 560 IAIVPQDPV---LF-HDTILYNINYGDKS---------KS---YEETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 560 i~~V~Q~~~---LF-~~Ti~eNi~~~~~~---------~~---~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LS 622 (816)
|+||||++. +| ..|+.||+.++... .. .+++.++++..++. +. .++. ..+||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~~LS 398 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS-------REQL----IMNLS 398 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCC-------ccCc----cccCC
Confidence 999999973 66 57999999875310 01 12344555555542 22 2333 35899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc--------CeEEEEc
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL--------GYKAHRK 693 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d--------g~i~~~g 693 (816)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|.|+|+|||+++.+...+ |+++..|
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999998864 4789999999999997654 6666665
Q ss_pred ChhH
Q psy4347 694 TSTN 697 (816)
Q Consensus 694 ~~~~ 697 (816)
+.++
T Consensus 479 ~~~~ 482 (501)
T PRK11288 479 AREQ 482 (501)
T ss_pred cccc
Confidence 5543
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=343.25 Aligned_cols=194 Identities=23% Similarity=0.336 Sum_probs=162.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------AN 383 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eE
Confidence 35999999999964 56999999999999999999999999999999999999999999999983 47
Q ss_pred cEEEcCCCC--cc-cccHHHHHhcCC-CCCCHHHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 560 IAIVPQDPV--LF-HDTILYNINYGD-KSKSYEETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 560 i~~V~Q~~~--LF-~~Ti~eNi~~~~-~~~~~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
+|||+|++. ++ ..|++||+.+.. +...++++.++++..++. +...+ ...+||||||||++||||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGq~qrv~la~a 452 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKK-----------SVKVLSGGEKGRMLFGKL 452 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcC-----------cccccCHHHHHHHHHHHH
Confidence 999999974 44 369999997542 223455677788887773 33332 236899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc--------CeEE-EEcChhHHhh
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL--------GYKA-HRKTSTNLVR 700 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d--------g~i~-~~g~~~~L~~ 700 (816)
|+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+...+ |+++ ..|+.+++++
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999999999999999999999987 469999999999998754 5555 4455555543
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.2e-35 Score=346.20 Aligned_cols=203 Identities=22% Similarity=0.297 Sum_probs=157.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+++|++ ++++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 36799999999999999999999999999999999999999999999975 2469
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCCC----------------CC----------HHHHHHHHHHcCCh-------hHHHhC
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDKS----------------KS----------YEETIEAAKLADLH-------NSIIKW 606 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~~----------------~~----------~~~i~~a~~~a~l~-------~~I~~L 606 (816)
|||||++.+|.. |+.||+.++... .. ..++.+.++.++.+ +.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999954 999999875210 00 01112222221111 111111
Q ss_pred CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhc-
Q psy4347 607 PNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL- 685 (816)
Q Consensus 607 P~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~- 685 (816)
|++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+...
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 121 1223345799999999999999999999999999999999999999999999873 5999999999999874
Q ss_pred c-------CeEE-EEcChhHHhhc
Q psy4347 686 L-------GYKA-HRKTSTNLVRG 701 (816)
Q Consensus 686 d-------g~i~-~~g~~~~L~~~ 701 (816)
| |+++ ..|++++..+.
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHH
Confidence 4 7765 56777765543
No 326
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=343.49 Aligned_cols=193 Identities=24% Similarity=0.318 Sum_probs=158.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 57999999999999999999999999999999999999999999999983 3599
Q ss_pred EEcCCCCccc-ccHHHHHhcCCCC----------------C----------------------CHHHHHHHHHHcCChhH
Q psy4347 562 IVPQDPVLFH-DTILYNINYGDKS----------------K----------------------SYEETIEAAKLADLHNS 602 (816)
Q Consensus 562 ~V~Q~~~LF~-~Ti~eNi~~~~~~----------------~----------------------~~~~i~~a~~~a~l~~~ 602 (816)
||+|++.+|. .|++||+.++... . ..+++.++++..++.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 9999998885 5999999865210 0 01223334444444322
Q ss_pred HHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHH
Q psy4347 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTI 682 (816)
Q Consensus 603 I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i 682 (816)
.. .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++ .+.|+|+|||+++.+
T Consensus 148 ~~----------~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~ 215 (530)
T PRK15064 148 QH----------YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFL 215 (530)
T ss_pred Hh----------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHH
Confidence 11 123468999999999999999999999999999999999999999999975 378999999999998
Q ss_pred Hh-cc-------CeEE-EEcChhHHhh
Q psy4347 683 KH-LL-------GYKA-HRKTSTNLVR 700 (816)
Q Consensus 683 ~~-~d-------g~i~-~~g~~~~L~~ 700 (816)
.. || |+++ ..|++++.++
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 76 45 8874 6788777664
No 327
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.7e-35 Score=322.46 Aligned_cols=175 Identities=33% Similarity=0.473 Sum_probs=151.9
Q ss_pred EeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCccc-ccHHHHHhcCCC--CCC----H
Q psy4347 515 IVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH-DTILYNINYGDK--SKS----Y 587 (816)
Q Consensus 515 ivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~ 587 (816)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+||+|++.+|. .|++||+.|+.. ..+ .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987654 4678999999999995 599999998632 112 2
Q ss_pred HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy4347 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667 (816)
Q Consensus 588 ~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~ 667 (816)
+++.++++..++.++..+.| .+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP-----------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh-----------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 45677788888877666655 6899999999999999999999999999999999999999999998864
Q ss_pred C--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 668 R--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 668 ~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
+ ++|+|+|||+++.+.. || |+|++.|+.+++.+..
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 3 7999999999998765 66 9999999999987754
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.3e-35 Score=342.72 Aligned_cols=202 Identities=22% Similarity=0.301 Sum_probs=162.6
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999963 35799999999999999999999999999999999999999999999986 2469
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCCC------------------CC--------HHHHHHHHHHcCChh-------HHHhC
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDKS------------------KS--------YEETIEAAKLADLHN-------SIIKW 606 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~~------------------~~--------~~~i~~a~~~a~l~~-------~I~~L 606 (816)
|||+|++.+|. .|++|||.++... .. .+++.++++..+.++ .+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999985 5999999875210 01 123555555555432 22222
Q ss_pred CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhc-
Q psy4347 607 PNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL- 685 (816)
Q Consensus 607 P~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~- 685 (816)
|++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+...
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123345689999999999999999999999999999999999999999999887 36999999999999874
Q ss_pred c-------CeEE-EEcChhHHhh
Q psy4347 686 L-------GYKA-HRKTSTNLVR 700 (816)
Q Consensus 686 d-------g~i~-~~g~~~~L~~ 700 (816)
| |+++ ..|++++..+
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 4 7764 5677776554
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.1e-34 Score=282.74 Aligned_cols=140 Identities=30% Similarity=0.484 Sum_probs=130.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
++++||+++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999964 47999999999999999999999999999999999999999999999994 4799
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
|++| ||+||+||++|||||+++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 642 LiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+||||||++||+.+...+.+.|+++ ++|+|+|||+++.+....++++..
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l 140 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIEL 140 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999999999999987 579999999999998766666554
No 330
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=289.75 Aligned_cols=206 Identities=25% Similarity=0.416 Sum_probs=176.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+.+|+|++-. ++.+|++|||+++|||++||+||||+|||||+|.|+|-..|++|++.+||.++.++++.++-++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 78899999884 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCc-ccccHHHHHhcCCC-C-----CCHHH--HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 562 IVPQDPVL-FHDTILYNINYGDK-S-----KSYEE--TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 562 ~V~Q~~~L-F~~Ti~eNi~~~~~-~-----~~~~~--i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
+.||+..| |.-|++|-+.+|.- . ..+++ ..+++..+++..|-.+ .=..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHH
Confidence 99999876 79999999999852 1 11233 4555677777655432 2257999999999999
Q ss_pred HHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 633 RAILK------NTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 633 RAll~------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|.|.. ++++|+||||||+||..-...+++..+++ .+|..+++|=|+|..... || |||+..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99974 44699999999999999999999999986 457899999999998755 55 99999999888
Q ss_pred Hhhc
Q psy4347 698 LVRG 701 (816)
Q Consensus 698 L~~~ 701 (816)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8765
No 331
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.7e-35 Score=338.27 Aligned_cols=201 Identities=22% Similarity=0.380 Sum_probs=160.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~ 559 (816)
-|+++|+++ .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 499999983 1599999999999999999999999999999999999999999999999998776644 4678
Q ss_pred cEEEcCCC---Cccc-ccHHHHHhcCC----C---CC--CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 560 IAIVPQDP---VLFH-DTILYNINYGD----K---SK--SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 560 i~~V~Q~~---~LF~-~Ti~eNi~~~~----~---~~--~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
|+||||++ .+|. .|+.+|+.... + .. ..+++.++++..++. ++. .......||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~----~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNH----AEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCC----ccCccccCCcHHH
Confidence 99999985 3674 59999985320 1 00 112234444444442 012 2233467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+.. || |+|+..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 47999999999999976 44 77777666554
Q ss_pred Hh
Q psy4347 698 LV 699 (816)
Q Consensus 698 L~ 699 (816)
+.
T Consensus 490 ~~ 491 (510)
T PRK15439 490 IN 491 (510)
T ss_pred CC
Confidence 43
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8e-35 Score=336.54 Aligned_cols=199 Identities=19% Similarity=0.244 Sum_probs=159.3
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-CcceEEECCEeCCC-CChHHHh
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIYIDGKNIND-VDLDSLR 557 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-~~G~I~idG~di~~-~~~~~lr 557 (816)
.-|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ......|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 35999999999964 4699999999999999999999999999999999998876 69999999987643 2334567
Q ss_pred hccEEEcCCCCccc---ccHHHHHhcCCC-------CCC---HHHHHHHHHHcCChh-HHHhCCCCccccccCCCCCCCh
Q psy4347 558 RHIAIVPQDPVLFH---DTILYNINYGDK-------SKS---YEETIEAAKLADLHN-SIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~---~Ti~eNi~~~~~-------~~~---~~~i~~a~~~a~l~~-~I~~LP~GydT~VGE~G~~LSG 623 (816)
+.|+||+|++.++. .|+.+++.++.. ... .+++.++++..++.+ ...+ ...+|||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSg 404 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADA-----------PFHSLSW 404 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccC-----------chhhCCH
Confidence 89999999987642 467777653310 011 235666777777654 3322 2368999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CEEEEEecChhHHHh-ccCeEEEE
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-N-KTTICIAHRLSTIKH-LLGYKAHR 692 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~-~T~i~IaHrls~i~~-~dg~i~~~ 692 (816)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ + .|+|+|||+++.+.. ++.+++..
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l 476 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV 476 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEe
Confidence 999999999999999999999999999999999999999988743 4 469999999999976 45555544
No 333
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=333.87 Aligned_cols=197 Identities=21% Similarity=0.317 Sum_probs=155.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH-HHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD-SLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~-~lr~~ 559 (816)
.|+++||++.| +++|+||||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 59999999975 2599999999999999999999999999999999999999999999999999876653 45778
Q ss_pred cEEEcCCC---Cccc-ccHHHH-----HhcCCC--C-CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCCh
Q psy4347 560 IAIVPQDP---VLFH-DTILYN-----INYGDK--S-KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 560 i~~V~Q~~---~LF~-~Ti~eN-----i~~~~~--~-~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG 623 (816)
++||||++ .+|. .|+.+| +.+... . .+ .+++.++++..++.+ +- ......+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~----~~~~~~~LSg 394 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PG----HRTQIGSLSG 394 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CC----cccccccCCc
Confidence 99999995 3664 477766 432211 1 11 122333333333310 11 2333467999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|||||++||||++.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+...+.+++..
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l 464 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVM 464 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEE
Confidence 99999999999999999999999999999999999999998754 5799999999999998765444443
No 334
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-35 Score=301.80 Aligned_cols=190 Identities=32% Similarity=0.455 Sum_probs=172.5
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC----CChHHHhhccEEEcCCCCcc-cccHHH
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----VDLDSLRRHIAIVPQDPVLF-HDTILY 576 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~----~~~~~lr~~i~~V~Q~~~LF-~~Ti~e 576 (816)
++||+.+.-.++||-|+||||||||+|+|.|+..|++|.|.+||.-+.+ +....-+++|||||||.-|| +.||+-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 6899998878999999999999999999999999999999999987765 33455688999999999999 679999
Q ss_pred HHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q psy4347 577 NINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITE 656 (816)
Q Consensus 577 Ni~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te 656 (816)
|++||....+.++..+++.+.|+.....++| ..||||||||+||+|||+.+|++|+||||.|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 9999987777788999999999999999999 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 657 NNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 657 ~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
++|+-.|+++.+ +..+++|||-+..+.. || |+|...|.-++++...
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999998876 4789999999998865 44 8888888888888764
No 335
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-33 Score=278.72 Aligned_cols=152 Identities=39% Similarity=0.641 Sum_probs=140.8
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEE
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~ 562 (816)
+++|++|.|++ .++++++||+|++|++++|+|+||||||||+++|.|+++|++|+|.+||.++.......+++.++|
T Consensus 1 ~~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 36899999965 479999999999999999999999999999999999999999999999999988777788899999
Q ss_pred EcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q psy4347 563 VPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPIL 642 (816)
Q Consensus 563 V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iL 642 (816)
++| |||||+||++||||++.+|+++
T Consensus 78 ~~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 78 VPQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred Eee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHhccCeEEEE
Q psy4347 643 VFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 643 iLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..+..+++..
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 153 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVL 153 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999988644 589999999999999976566554
No 336
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.2e-34 Score=294.81 Aligned_cols=177 Identities=19% Similarity=0.246 Sum_probs=142.4
Q ss_pred cceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEE-ECCEeCCCCChHHHhhccEEEcCCCCcccc-cHHH
Q psy4347 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY-IDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TILY 576 (816)
Q Consensus 499 vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~-idG~di~~~~~~~lr~~i~~V~Q~~~LF~~-Ti~e 576 (816)
+|+||||+|++||++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 887543 13357778865 9999
Q ss_pred HHhcCCC--CCCHHHHHHHH-HHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q psy4347 577 NINYGDK--SKSYEETIEAA-KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653 (816)
Q Consensus 577 Ni~~~~~--~~~~~~i~~a~-~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~ 653 (816)
|+.+... ..+.+++.+.+ +. ..+++.+++.++ .||||||||++|||||+.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQL-------TQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH-------hChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9987421 23344443333 22 234555566554 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 654 ITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 654 ~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
.+...+.+.|.+..+++|+|+|||+++.+.. || |+++..|+-+++.
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 9999999988665567899999999999964 55 7777666655553
No 337
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=273.77 Aligned_cols=199 Identities=24% Similarity=0.374 Sum_probs=173.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC---cceEEECCEeCCCCChHHHh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNINDVDLDSLR 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~---~G~I~idG~di~~~~~~~lr 557 (816)
.+.++||+.+-++ ...|-++||+|.+||++-|.||||||||||+.-+.|+++|+ +|++.+|++++..++. -+
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQ 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hh
Confidence 3678999988764 57899999999999999999999999999999999999996 8999999999988764 47
Q ss_pred hccEEEcCCCCcc-cccHHHHHhcCCCC-----CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 558 RHIAIVPQDPVLF-HDTILYNINYGDKS-----KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 558 ~~i~~V~Q~~~LF-~~Ti~eNi~~~~~~-----~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
+++|+.+||+.|| +-+|.+||.|.-|. +.......|++..++.++..+.| .+||||||-|||+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHH
Confidence 8999999999999 56999999998652 22344667778889999988888 6899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-h-cCCCEEEEEecChhHHHhccCeEEEEcChh
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKT-A-SRNKTTICIAHRLSTIKHLLGYKAHRKTST 696 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~-~-~~~~T~i~IaHrls~i~~~dg~i~~~g~~~ 696 (816)
-|+|+..|+.|+||||.|.||..-..+..+..-. . ..|..+|.|||++..+. ++++|+|.+.-+
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~~~~e 211 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEMAQWE 211 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeeeehhc
Confidence 9999999999999999999999888777766422 2 23889999999999988 889999987644
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-33 Score=282.72 Aligned_cols=140 Identities=31% Similarity=0.388 Sum_probs=126.5
Q ss_pred EeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEc
Q psy4347 485 RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVP 564 (816)
Q Consensus 485 ~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~ 564 (816)
.||+++|++ .++++|+ |+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 588999954 5789884 9999999999999999999999999999999999999999964 78999
Q ss_pred CCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q psy4347 565 QDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644 (816)
Q Consensus 565 Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiL 644 (816)
|++. ||||||||++||||++.+|+++||
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8653 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChhHHHhccCeEEEE
Q psy4347 645 DEATSSLDSITENNILSSLKTAS-R-NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 645 DE~Ts~LD~~te~~i~~~l~~~~-~-~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||||++||+.+.+.+.+.|+++. + ++|+|+|||+++.+....++++..
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 145 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99999999999999999998864 3 389999999999999765676554
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.4e-33 Score=329.62 Aligned_cols=184 Identities=23% Similarity=0.262 Sum_probs=157.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ + .|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 4999999999954 24999999999999999999999999999999999999999999986 1 49
Q ss_pred EEEcCCCCcc-cccHHHHHhcCCCCC-CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 561 AIVPQDPVLF-HDTILYNINYGDKSK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 561 ~~V~Q~~~LF-~~Ti~eNi~~~~~~~-~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
+|+||++.++ +.|++||+.++.... ....+.++++..++.+...+.| .+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-----------~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNV-----------KDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHhcC
Confidence 9999998765 679999998763222 2345567778888866554443 67999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEEE
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+....++|+..
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999998743 789999999999998755555544
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.9e-33 Score=328.05 Aligned_cols=188 Identities=24% Similarity=0.332 Sum_probs=154.8
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ .
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------K 386 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------E
Confidence 35999999999964 5799999999999999999999999999999999999999999999955 22 5
Q ss_pred cEEEcCCCC-cc-cccHHHHHhcCCCC--C--CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 560 IAIVPQDPV-LF-HDTILYNINYGDKS--K--SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 560 i~~V~Q~~~-LF-~~Ti~eNi~~~~~~--~--~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
||||+|++. ++ +.|+.||+.++... . .+.+..++++..++.+.. ......+||||||||++|||
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHH
Confidence 999999973 66 45999999886421 1 123344555555553211 12223679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+...+.+|+...
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~ 514 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFE 514 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999873 499999999999988666666553
No 341
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-34 Score=282.58 Aligned_cols=206 Identities=24% Similarity=0.395 Sum_probs=180.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|+. +.||+|+|++|++|.+++|+||||+|||||+.+++|+.++++|+|.|||.++.+.+.+.|.+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999964 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcc-cccHHHHHhcCCC-------CCCH-HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDK-------SKSY-EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~-------~~~~-~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
+.-|+..+- .-||+|=+.||+- ...| .-|.+|.+..++.+.=.+. =.+||||||||.-||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhh
Confidence 999999887 4599999999852 2222 3356666777765432221 147999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhc-c-------CeEEEEcChhHHhhc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHL-L-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~-d-------g~i~~~g~~~~L~~~ 701 (816)
..+..+.+.++||||..+||......+++.|+++.+ ++|+++|-|+....... | |+|+.+|+.+|++..
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999999999999988654 79999999999988664 3 999999999998865
No 342
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.7e-33 Score=326.52 Aligned_cols=187 Identities=24% Similarity=0.347 Sum_probs=154.9
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
.-|+++||++.|++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ .
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------K 388 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------E
Confidence 35999999999964 5799999999999999999999999999999999999999999999955 21 5
Q ss_pred cEEEcCCC-Ccc-cccHHHHHhcCCC----CCCHHHHHHHHHHcCChh-HHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDP-VLF-HDTILYNINYGDK----SKSYEETIEAAKLADLHN-SIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~-~LF-~~Ti~eNi~~~~~----~~~~~~i~~a~~~a~l~~-~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
||||||++ .++ +.|++||+.++.. ...+.+..++++..++.+ ...+ ...+||||||||++||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~la 457 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQK-----------KVGVLSGGERNRLHLA 457 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcC-----------chhhCCHHHHHHHHHH
Confidence 99999997 566 4599999987532 112334445566666532 2222 2357999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEEc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~g 693 (816)
|||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+...+.+|+...
T Consensus 458 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~ 516 (556)
T PRK11819 458 KTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFE 516 (556)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999873 499999999999988666666554
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.1e-33 Score=331.58 Aligned_cols=185 Identities=24% Similarity=0.367 Sum_probs=154.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4999999999964 57999999999999999999999999999999999999999999999 5432 59
Q ss_pred EEEcCCC-Cccc-ccHHHHHhcCCCCC--C--HHHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDP-VLFH-DTILYNINYGDKSK--S--YEETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~-~LF~-~Ti~eNi~~~~~~~--~--~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
||++|++ .++. .||.||+.++.+.. + ..++.+.++..++. +.. ++.+ ..||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~----~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRA-------MTPV----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHH-------hChh----hhCCHHHHHHHHHHH
Confidence 9999986 4664 59999998764321 1 33455555555553 222 3333 579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||++..+...+.+|+..
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l 510 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIF 510 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999887 469999999999998876666665
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.4e-33 Score=332.43 Aligned_cols=187 Identities=25% Similarity=0.325 Sum_probs=153.2
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
.-|+++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 35999999999964 35699999999999999999999999999999999999999999999876 246
Q ss_pred cEEEcCCCCcccccHHHHHhc----CCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 560 IAIVPQDPVLFHDTILYNINY----GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~----~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
|||++|++. ...++.+|..+ ..+..+++++.++++..++.+.... .....||||||||++|||||
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~----------~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhc----------CCccccCHHHHHHHHHHHHH
Confidence 999999863 23345555321 1233456788888888888642221 12368999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 636 LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+.+|++|||||||++||+.+...+.+.|.+. + .|+|+|||++..+...+.+|+..
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l 697 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVV 697 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999876 3 49999999999998765444444
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-33 Score=330.59 Aligned_cols=185 Identities=19% Similarity=0.288 Sum_probs=153.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999964 57999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcCCC--Ccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChh-HHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 561 AIVPQDP--VLF-HDTILYNINYGDKSKSYEETIEAAKLADLHN-SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 561 ~~V~Q~~--~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~-~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
||++|++ .++ ..|+.+++....+....+++.++++..++.. ...+. ...||||||||++|||||+
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----------~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEE-----------TRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCc-----------hhhCCHHHHHHHHHHHHHh
Confidence 9999985 354 3488998753223334556777777777642 33222 2579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+...+.+|+..
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l 500 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLV 500 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999987 359999999999998765444444
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=8.2e-33 Score=350.90 Aligned_cols=207 Identities=24% Similarity=0.309 Sum_probs=171.3
Q ss_pred ccEEEEeeEEEeCCC----------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC--CcceEEECCEe
Q psy4347 480 ASIEFRDVNFSYIDK----------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP--NAGAIYIDGKN 547 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p--~~G~I~idG~d 547 (816)
..++|+||++..+.. ....+|+|||++++||+++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999998521 124699999999999999999999999999999999999874 78999999988
Q ss_pred CCCCChHHHhhccEEEcCCCCccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHcCChhHHHhCCCCccccccCC
Q psy4347 548 INDVDLDSLRRHIAIVPQDPVLFH-DTILYNINYGD----K-SKSYE----ETIEAAKLADLHNSIIKWPNHYETQVGER 617 (816)
Q Consensus 548 i~~~~~~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~----~-~~~~~----~i~~a~~~a~l~~~I~~LP~GydT~VGE~ 617 (816)
+. ...+|+.+|||+|++.++. .||+|||.++. | ..+.+ .+.++++..++.+. .|+.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCC
Confidence 64 3456788999999998884 69999998741 2 22322 35667777777543 47888865
Q ss_pred C-CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhH-H-Hhcc-------
Q psy4347 618 G-LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLST-I-KHLL------- 686 (816)
Q Consensus 618 G-~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~-i-~~~d------- 686 (816)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++. + ..+|
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 5 6899999999999999999999999999999999999999999999864 47999999999984 3 4555
Q ss_pred -CeEEEEcChh
Q psy4347 687 -GYKAHRKTST 696 (816)
Q Consensus 687 -g~i~~~g~~~ 696 (816)
|+++..|+..
T Consensus 1096 gG~~v~~G~~~ 1106 (1470)
T PLN03140 1096 GGQVIYSGPLG 1106 (1470)
T ss_pred CCEEEEECCcc
Confidence 6888888753
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.3e-33 Score=278.20 Aligned_cols=208 Identities=22% Similarity=0.344 Sum_probs=173.7
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCC--cc-cc
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPV--LF-HD 572 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~--LF-~~ 572 (816)
++++|+++||+|++|++|.|+|.||||||||++.|.|-..|++|+|.|||+|+..++...--..++-|+|||. .+ +.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 5789999999999999999999999999999999999999999999999999999999888888999999986 45 56
Q ss_pred cHHHHHhcCCCC---CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q psy4347 573 TILYNINYGDKS---KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649 (816)
Q Consensus 573 Ti~eNi~~~~~~---~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts 649 (816)
||.||+.++... .....-...-+.....+.+..+|.|++-.++.+-.-|||||||-|+++-|-++.|+||+|||=|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 999999876321 11111112223344456788899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh--cCCCEEEEEecChhHHHhccCeEEEEcChhHHhhcCc
Q psy4347 650 SLDSITENNILSSLKTA--SRNKTTICIAHRLSTIKHLLGYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 650 ~LD~~te~~i~~~l~~~--~~~~T~i~IaHrls~i~~~dg~i~~~g~~~~L~~~~~ 703 (816)
||||.+...|++.=.+. ..+-|+++|||.+...-++..|.+....++.++.-.+
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g 233 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTG 233 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccc
Confidence 99999999999875553 2357999999999999888756665555555554444
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.4e-32 Score=274.85 Aligned_cols=152 Identities=25% Similarity=0.326 Sum_probs=124.5
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHH
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~ 575 (816)
.+++|+|+||+|++|++++|+||||||||||+++++ +++|+|.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 568999999999999999999999999999999985 479999999862 221 2446888887
Q ss_pred HHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC--CCEEEEeCCCCCCCH
Q psy4347 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN--TPILVFDEATSSLDS 653 (816)
Q Consensus 576 eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~--p~iLiLDE~Ts~LD~ 653 (816)
.++++..++.+. .......+||||||||++|||||+++ |++|||||||++||+
T Consensus 68 ---------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 ---------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred ---------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 233444443221 24556679999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 654 ITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 654 ~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
.+.+.+.+.|+++. .++|+|+|||+++.+..+| +++..
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d-~i~~l 161 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSAD-WIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCC-EEEEE
Confidence 99999999998864 5899999999999987665 55444
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-32 Score=322.36 Aligned_cols=193 Identities=23% Similarity=0.274 Sum_probs=146.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ +++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .|+
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999964 679999999999999999999999999999999999999999999999852 277
Q ss_pred EEcCCCCcccccHHHHHhcCCC---------------------------------CCCHHHHHHHHHHcCChhHHHhCCC
Q psy4347 562 IVPQDPVLFHDTILYNINYGDK---------------------------------SKSYEETIEAAKLADLHNSIIKWPN 608 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~---------------------------------~~~~~~i~~a~~~a~l~~~I~~LP~ 608 (816)
|++|++..+..|+.+++.-+.. ...++++.++++..|+.+
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~------- 140 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN------- 140 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-------
Confidence 7777654444455444321100 000122333333333321
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc--
Q psy4347 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-- 686 (816)
Q Consensus 609 GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-- 686 (816)
........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||++..+...+
T Consensus 141 ---~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~ 215 (638)
T PRK10636 141 ---EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDK 215 (638)
T ss_pred ---hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCE
Confidence 1122233579999999999999999999999999999999999999999999886 579999999999998754
Q ss_pred ------CeEEE-EcChhHHhh
Q psy4347 687 ------GYKAH-RKTSTNLVR 700 (816)
Q Consensus 687 ------g~i~~-~g~~~~L~~ 700 (816)
|+++. .|+++....
T Consensus 216 i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 216 IIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred EEEEeCCEEEEecCCHHHHHH
Confidence 66643 455555443
No 350
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.8e-33 Score=325.33 Aligned_cols=191 Identities=25% Similarity=0.292 Sum_probs=156.5
Q ss_pred EeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEE-----------ECCEeCCCCCh
Q psy4347 485 RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY-----------IDGKNINDVDL 553 (816)
Q Consensus 485 ~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~-----------idG~di~~~~~ 553 (816)
++++++|++ ...+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348999964 346999999 9999999999999999999999999999999999998 99999875432
Q ss_pred HH--Hhhc----cEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 554 DS--LRRH----IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 554 ~~--lr~~----i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
+. .+.. +++++|.|.+|.+|++||+.+.+ ..+++.++++..++.+.. |+.+ .+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l~~l~l~~~~-------~~~~----~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVVERLGLENIL-------DRDI----SELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHHHHcCCchhh-------cCCh----hhCCHHHHH
Confidence 11 1123 44555667788889999997532 235677777777775443 2223 579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+....++|+..
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999998766899999999999998766566543
No 351
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.98 E-value=8.5e-33 Score=264.93 Aligned_cols=136 Identities=46% Similarity=0.754 Sum_probs=125.6
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccc-cHHHHH
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TILYNI 578 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~-Ti~eNi 578 (816)
|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|++|++.+|.+ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999998889999999999999999966 69999
Q ss_pred hcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q psy4347 579 NYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649 (816)
Q Consensus 579 ~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts 649 (816)
..++++.++++..++.+ ..++.++.+...||||||||++|||||+++|++|||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34567888888887755 35778888889999999999999999999999999999996
No 352
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.98 E-value=5.6e-32 Score=291.66 Aligned_cols=213 Identities=26% Similarity=0.420 Sum_probs=178.5
Q ss_pred cEEEEeeEEEeCC-CcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-----CcceEEECCEeCCCCChH
Q psy4347 481 SIEFRDVNFSYID-KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-----NAGAIYIDGKNINDVDLD 554 (816)
Q Consensus 481 ~I~~~~vsf~Y~~-~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-----~~G~I~idG~di~~~~~~ 554 (816)
-++++|++..|.. +....+++||||+|.+||++||||+||||||-.++.++|+++- -+|+|+++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3788999888852 1346799999999999999999999999999999999999854 389999999999999988
Q ss_pred HHhh----ccEEEcCCCCc--cc-ccH----HHHHhcCCC---CCCHHHHHHHHHHcCChh---HHHhCCCCccccccCC
Q psy4347 555 SLRR----HIAIVPQDPVL--FH-DTI----LYNINYGDK---SKSYEETIEAAKLADLHN---SIIKWPNHYETQVGER 617 (816)
Q Consensus 555 ~lr~----~i~~V~Q~~~L--F~-~Ti----~eNi~~~~~---~~~~~~i~~a~~~a~l~~---~I~~LP~GydT~VGE~ 617 (816)
.+|. .|+++||+|.- -. -|| .|-|.+-+. .+-.+++.+.++.+|+.+ .+.+.|
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------- 155 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------- 155 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC----------
Confidence 8876 79999999862 21 244 455554321 233578889999999854 455666
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhcc--------C
Q psy4347 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLL--------G 687 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~d--------g 687 (816)
.+||||||||+.||.||+.+|++||-||||.|||.....+|++.|+++. .|..+++|||+|+.++... |
T Consensus 156 -HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 156 -HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred -cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 7899999999999999999999999999999999999999999998864 3799999999999998754 9
Q ss_pred eEEEEcChhHHhhcCch
Q psy4347 688 YKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 688 ~i~~~g~~~~L~~~~~~ 704 (816)
+|+|.|+-+.|.+....
T Consensus 235 ~ivE~~~t~~lF~~PqH 251 (534)
T COG4172 235 EIVETGTTETLFAAPQH 251 (534)
T ss_pred EEeecCcHHHHhhCCCC
Confidence 99999998888776543
No 353
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.4e-31 Score=273.22 Aligned_cols=208 Identities=22% Similarity=0.407 Sum_probs=172.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.+++++|+++|++ +.|++|+||++++|++.+++||||+||||.+++|+||++|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 3799999999964 789999999999999999999999999999999999999999999999998865 457789
Q ss_pred EEEcCCCCcc-cccHHHHHhcCCC--CCCHHHHHHHHHHcCChhHHHhCCC-CccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 561 AIVPQDPVLF-HDTILYNINYGDK--SKSYEETIEAAKLADLHNSIIKWPN-HYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 561 ~~V~Q~~~LF-~~Ti~eNi~~~~~--~~~~~~i~~a~~~a~l~~~I~~LP~-GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
||.|.+--|+ ..||.|-|.|... ..+.+|+..-+ ..|..++.- |+.| .+-..||-|.+|+|-+--|++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~-----~~wLer~~i~~~~~---~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL-----QAWLERLEIVGKKT---KKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH-----HHHHHhcccccccc---chHHHhhhhhhHHHHHHHHHh
Confidence 9999999999 5699999998632 33444443322 233443321 2222 334579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc--------CeEEEEcChhHHhhcCc
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL--------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L~~~~~ 703 (816)
++|+++|||||+|+|||.+.+.+.+.+.+++ +|.|+|+.+|||+-+...| |+.|-.|+-+.+.+..|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 9999999999999999999999999998864 5899999999999997754 88888888877766433
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=275.51 Aligned_cols=200 Identities=25% Similarity=0.393 Sum_probs=163.4
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhh
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRR 558 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~ 558 (816)
.-|+++||+..|. ++++|+|||++|++||..+|+||||||||||++++.|.+.|++|.+.+.|+....-+. .++|+
T Consensus 30 ~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 3599999999995 4789999999999999999999999999999999999999999999999999988887 99999
Q ss_pred ccEEEcCC---CCcccccHHHHHhcC--------CCCCCHHH---HHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 559 HIAIVPQD---PVLFHDTILYNINYG--------DKSKSYEE---TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 559 ~i~~V~Q~---~~LF~~Ti~eNi~~~--------~~~~~~~~---i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
+||+|+-+ .+.=+.+++|=+.-| ....++++ +...++..++.+.. +..=..||-|
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la-----------~r~~~~LS~G 175 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA-----------DRPFGSLSQG 175 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhc-----------cCchhhcCHh
Confidence 99999754 222245666655321 11345444 34444555665422 2223589999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEEecChhHHHhcc--------CeEEEEc
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR---NKTTICIAHRLSTIKHLL--------GYKAHRK 693 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~---~~T~i~IaHrls~i~~~d--------g~i~~~g 693 (816)
||||+-|||||+++|++|||||||++||......+.+.|.++.. +.|+|+|||..+.+..|= |+++.+|
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 99999999999999999999999999999999999999988643 578999999999998763 7766655
No 355
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=8.2e-32 Score=342.47 Aligned_cols=195 Identities=25% Similarity=0.291 Sum_probs=161.9
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC----CCCcceEEECCEeCCCCChHHHhhccEEEcCCCCccc-
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF----EPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH- 571 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~----~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~- 571 (816)
+++|+|||+++++||++||+||||||||||+|+|+|.. .|++|+|.+||.++.+.. ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 56999999999999999999999999999999999986 579999999999986543 346778999999998885
Q ss_pred ccHHHHHhcCC----C-----CCCHHHH-----HHHHHHcCChhHHHhCCCCccccccC-CCCCCChhHHHHHHHHHHhc
Q psy4347 572 DTILYNINYGD----K-----SKSYEET-----IEAAKLADLHNSIIKWPNHYETQVGE-RGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 572 ~Ti~eNi~~~~----~-----~~~~~~i-----~~a~~~a~l~~~I~~LP~GydT~VGE-~G~~LSGGqrQRiaiARAll 636 (816)
.||+||+.++. | ..+.++. .++++..++ .+-.||.||+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 59999998751 1 1222221 223444444 3446899986 45789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecCh-hHHH-hcc-------CeEEEEcChhHHh
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRL-STIK-HLL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrl-s~i~-~~d-------g~i~~~g~~~~L~ 699 (816)
.+|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|++ +.+. .+| |+++..|+.+++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999753 79999999997 4454 466 9999999988874
No 356
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=4e-31 Score=314.61 Aligned_cols=190 Identities=25% Similarity=0.311 Sum_probs=144.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ .++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|.++|. . .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EEE
Confidence 899999999964 57999999999999999999999999999999999999999999999873 1 156
Q ss_pred EEcCCCCcc-cccHHHHHhcCCC----------------------------------------CCCHHHHHHHHHHcCCh
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDK----------------------------------------SKSYEETIEAAKLADLH 600 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~----------------------------------------~~~~~~i~~a~~~a~l~ 600 (816)
+++|++... .+++.+++..+.. ....+++.++++..++.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 666654321 2455544321100 00012223333333321
Q ss_pred hHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 601 ~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
.+ ..-..|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ +.|+|+|||+..
T Consensus 150 ---------~~----~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~ 214 (635)
T PRK11147 150 ---------PD----AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRS 214 (635)
T ss_pred ---------CC----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 12 233579999999999999999999999999999999999999999999987 369999999999
Q ss_pred HHHhc-c-------CeEEE-EcChhHHhh
Q psy4347 681 TIKHL-L-------GYKAH-RKTSTNLVR 700 (816)
Q Consensus 681 ~i~~~-d-------g~i~~-~g~~~~L~~ 700 (816)
.+... | |+++. .|++++.++
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence 99774 4 77653 466665544
No 357
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.6e-31 Score=262.24 Aligned_cols=206 Identities=17% Similarity=0.306 Sum_probs=175.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECC-EeCCCCChHH-Hhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG-KNINDVDLDS-LRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG-~di~~~~~~~-lr~ 558 (816)
-++++||+.+|+. -.+|+|+||+|.+||.-+|+||||+||||++..|.|--.|+.|+|+++| .|+..++... .|.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999964 7899999999999999999999999999999999999999999999999 9999998744 577
Q ss_pred ccEEEcCCCCccc-ccHHHHHhcCC-------------C-CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCCh
Q psy4347 559 HIAIVPQDPVLFH-DTILYNINYGD-------------K-SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623 (816)
Q Consensus 559 ~i~~V~Q~~~LF~-~Ti~eNi~~~~-------------~-~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG 623 (816)
.||--||.|..|. -||+||+.+.. . ....+++.+.+...++.+.-.. ....||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-----------~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-----------LAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-----------hhhhhcc
Confidence 8999999999994 59999997541 1 1123467888888877664332 2368999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc--------CeEEEEcCh
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL--------GYKAHRKTS 695 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d--------g~i~~~g~~ 695 (816)
||||++.|+.-++.+|++|+||||++++--+...+.-+.|+.++..+++++|.|++..++... |.|...|+-
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 999999999999999999999999999988888888899999999999999999999999877 555555555
Q ss_pred hHHhh
Q psy4347 696 TNLVR 700 (816)
Q Consensus 696 ~~L~~ 700 (816)
+++-+
T Consensus 231 d~v~~ 235 (249)
T COG4674 231 DEVQN 235 (249)
T ss_pred HHhhc
Confidence 55443
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=2.9e-31 Score=336.86 Aligned_cols=201 Identities=21% Similarity=0.319 Sum_probs=161.6
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC---cceEEECCEeCCCCChHHHhhccEEEcCCCCcc-cc
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HD 572 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~---~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~ 572 (816)
+.+|+|||++|+|||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+| ..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 56999999999999999999999999999999999999998 999999999987654 378899999999888 56
Q ss_pred cHHHHHhcCCC----C--------CCHH----------HH---HHHHHHcCC------hhHH--HhCCCCccccccCCC-
Q psy4347 573 TILYNINYGDK----S--------KSYE----------ET---IEAAKLADL------HNSI--IKWPNHYETQVGERG- 618 (816)
Q Consensus 573 Ti~eNi~~~~~----~--------~~~~----------~i---~~a~~~a~l------~~~I--~~LP~GydT~VGE~G- 618 (816)
||+||+.|+.. . .+.+ ++ .+++...+. ++.+ ..|.+-.||.||+..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987411 0 0111 11 111111111 1122 234556789998654
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChh--HHHhcc-------C
Q psy4347 619 LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLS--TIKHLL-------G 687 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls--~i~~~d-------g 687 (816)
..|||||||||+|||||+.+|++|+|||||++||+.+...+.+.|+++. .|+|+|+++|+++ ....+| |
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6899999999999999999999999999999999999999999999874 3789999999963 445566 9
Q ss_pred eEEEEcChhHHhh
Q psy4347 688 YKAHRKTSTNLVR 700 (816)
Q Consensus 688 ~i~~~g~~~~L~~ 700 (816)
+++..|+.+++.+
T Consensus 415 ~ivy~G~~~~~~~ 427 (1470)
T PLN03140 415 QIVYQGPRDHILE 427 (1470)
T ss_pred eEEEeCCHHHHHH
Confidence 9999999988863
No 359
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-30 Score=260.81 Aligned_cols=208 Identities=25% Similarity=0.346 Sum_probs=177.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC--CCCCcceEEECCEeCCCCCh-HHHh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDL-DSLR 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl--~~p~~G~I~idG~di~~~~~-~~lr 557 (816)
.++++|++.+-.+ .+++|++|||+|++||+.||.||||||||||.+.|+|. |++++|+|++||+||.++++ +..|
T Consensus 3 ~L~I~dLhv~v~~--~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEG--KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecC--chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 3789999988854 25899999999999999999999999999999999997 58999999999999999998 4568
Q ss_pred hccEEEcCCCCcccc-cHHHHHhcCC------CC---CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 558 RHIAIVPQDPVLFHD-TILYNINYGD------KS---KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~~-Ti~eNi~~~~------~~---~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
..|.+-+|.|.=+.| |+.+-++.+. +. .-.+++.++++..++++.... -.|. ..+|||||.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~------R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE------RYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh------cccC---CCcCcchHH
Confidence 889999999999988 8888776431 11 124678888899998773322 2233 469999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhc--c-------CeEEEEcChhH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHL--L-------GYKAHRKTSTN 697 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~--d-------g~i~~~g~~~~ 697 (816)
|..|+.+++-+|++.|||||=|+||..+-+.|-+.+++++ +++++++|||.-..+... | |+|+..|.. |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998865 479999999999988876 4 999999998 6
Q ss_pred Hhh
Q psy4347 698 LVR 700 (816)
Q Consensus 698 L~~ 700 (816)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 654
No 360
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.6e-30 Score=254.90 Aligned_cols=211 Identities=27% Similarity=0.454 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCC------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH
Q psy4347 482 IEFRDVNFSYIDK------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS 555 (816)
Q Consensus 482 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~ 555 (816)
++++|+++.|..+ ....+++.|||++++|+++||+|.||||||||+|+|.|..+|++|+|++||+++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 5677776655321 1246899999999999999999999999999999999999999999999999997666666
Q ss_pred HhhccEEEcCCCC-ccc-----ccHHH-----HHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh
Q psy4347 556 LRRHIAIVPQDPV-LFH-----DTILY-----NINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG 624 (816)
Q Consensus 556 lr~~i~~V~Q~~~-LF~-----~Ti~e-----Ni~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG 624 (816)
--++|-+++|||. -|+ |+|.| |-.+ .|....++|.+-++.+|+. |+--+- .-..||-|
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL~------Pdhan~----~~~~la~~ 153 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL-EPEQRRKQIFETLRMVGLL------PDHANY----YPHMLAPG 153 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccC-ChHHHHHHHHHHHHHhccC------cccccc----chhhcCch
Confidence 6678999999985 232 22222 2111 2334557899999999983 332111 12579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEEecChhHHHhcc--------CeEEEEcC
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA--SRNKTTICIAHRLSTIKHLL--------GYKAHRKT 694 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~--~~~~T~i~IaHrls~i~~~d--------g~i~~~g~ 694 (816)
||||+|+||||+-+|+|+|-|||..+||.....++.+..-++ ..|..-|.|++.+..+++.. |+++|.|+
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 999999999999999999999999999999999999886554 34899999999999999864 99999999
Q ss_pred hhHHhhcCc
Q psy4347 695 STNLVRGNS 703 (816)
Q Consensus 695 ~~~L~~~~~ 703 (816)
..++++...
T Consensus 234 t~~v~a~P~ 242 (267)
T COG4167 234 TADVLASPL 242 (267)
T ss_pred hhhhhcCCc
Confidence 888887653
No 361
>KOG0061|consensus
Probab=99.97 E-value=3.3e-30 Score=303.96 Aligned_cols=211 Identities=31% Similarity=0.432 Sum_probs=176.3
Q ss_pred ccEEEEeeEEEeCCCc--ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC---CcceEEECCEeCCCCChH
Q psy4347 480 ASIEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP---NAGAIYIDGKNINDVDLD 554 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p---~~G~I~idG~di~~~~~~ 554 (816)
-.++|+|++..-++.. .+.+|+|||.+++|||..||.||||||||||++.|+|...+ .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 4689999999886531 47899999999999999999999999999999999999975 7999999995 45678
Q ss_pred HHhhccEEEcCCCCcc-cccHHHHHhcCC----CC-CC----HHHHHHHHHHcCChhHHHhCCCCccccccC-CCCCCCh
Q psy4347 555 SLRRHIAIVPQDPVLF-HDTILYNINYGD----KS-KS----YEETIEAAKLADLHNSIIKWPNHYETQVGE-RGLKLSG 623 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~----~~-~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE-~G~~LSG 623 (816)
.+++..|||+||+.++ +-||+|++.|.. |. .+ ++.|.+..+.-++.+ + =||.||. .+..+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-C------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-h------ccceecCCCCCcccc
Confidence 8999999999999999 459999998751 21 12 244555555556642 2 4788984 3368999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHH--Hhcc-------CeEEEEc
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTI--KHLL-------GYKAHRK 693 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i--~~~d-------g~i~~~g 693 (816)
|||+|++||--|+.||+||+||||||+||+.+..++.+.|++++ +|||+|+.=|.++.= ...| |+++-.|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999864 589999999999742 3334 9999999
Q ss_pred ChhHHhh
Q psy4347 694 TSTNLVR 700 (816)
Q Consensus 694 ~~~~L~~ 700 (816)
..+++.+
T Consensus 254 ~~~~~~~ 260 (613)
T KOG0061|consen 254 SPRELLE 260 (613)
T ss_pred CHHHHHH
Confidence 9987754
No 362
>KOG0064|consensus
Probab=99.97 E-value=3.8e-27 Score=260.49 Aligned_cols=409 Identities=19% Similarity=0.240 Sum_probs=259.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 242 IDRGSRGINFVLSAMVFNIVPTIFELALISSILSYK-CGSEFSLLAVSCVGIY--TAYTLSITQWRTQFRVNMNKAENEA 318 (816)
Q Consensus 242 i~~d~~~i~~~~~~~~~~ii~~v~~~v~~~~il~~~-~~~~LaLi~l~~~~l~--~~i~~~~~~~~~~~~~~~~~~~~~~ 318 (816)
++.|..........+..++.-.+++++++++.++-. .+..-+-+.++.+.++ ..+...++.+..+...+.....+.+
T Consensus 223 LTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~l 302 (728)
T KOG0064|consen 223 LTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYL 302 (728)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHH
Confidence 444444444445555666666677776655443311 1111111111111111 1111222222233322222223334
Q ss_pred HhHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHH-HHHHHH
Q psy4347 319 GNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQ-SAIFST 397 (816)
Q Consensus 319 ~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~-~~i~~l 397 (816)
...=...+.|.+.|-.|+..+.|.++.++......+.....- .. + ..+..+-.+++ ..+.+.
T Consensus 303 r~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~--k~-----r----------~~YiMleqF~mKYvWsg~ 365 (728)
T KOG0064|consen 303 RYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIF--KV-----R----------LWYIMLEQFVMKYTWSGT 365 (728)
T ss_pred HHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH--HH-----H----------HHHHHHHHHHHHHhhccC
Confidence 344456788999999999999999998887776665433330 00 0 00011111111 112222
Q ss_pred HHHH--HHHHHHHHHHcCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------
Q psy4347 398 AMTL--SMIFAAREIAHGNLT--------VGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKE------ 461 (816)
Q Consensus 398 ~~~~--vl~~G~~lV~~G~lt--------vG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~------ 461 (816)
+++. +=.+.+.....|... .-.++.--.++......+..+...+.++++....-.|+++.++.-
T Consensus 366 GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g 445 (728)
T KOG0064|consen 366 GLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKG 445 (728)
T ss_pred ceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 2111 000111122222211 122333333556666778888888889998888888887665321
Q ss_pred -------cccccc------ccCCcccc---CCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhH
Q psy4347 462 -------PTIKNK------ANALPLVL---TTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKST 525 (816)
Q Consensus 462 -------~e~~~~------~~~~~~~~---~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKST 525 (816)
++..+. .+..+.+- ......|.++||-.--|+ ...+...+||+|++|-.+-|.||||||||+
T Consensus 446 ~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~--~~vvv~~Ltf~i~~G~hLLItGPNGCGKSS 523 (728)
T KOG0064|consen 446 NYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPA--GDVLVPKLTFQIEPGMHLLITGPNGCGKSS 523 (728)
T ss_pred cccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccC--cceeecceeEEecCCceEEEECCCCccHHH
Confidence 111000 00000000 001234999999887776 566899999999999999999999999999
Q ss_pred HHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC-------CCCCHHHHHHHHHHcC
Q psy4347 526 IIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD-------KSKSYEETIEAAKLAD 598 (816)
Q Consensus 526 l~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~-------~~~~~~~i~~a~~~a~ 598 (816)
|.+.|.|+++...|...+-- +.+|-|+||.|+.=-||+||-|-|.+ .+.+|.+++..++.+.
T Consensus 524 LfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~ 592 (728)
T KOG0064|consen 524 LFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVH 592 (728)
T ss_pred HHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhh
Confidence 99999999998777665421 23499999999999999999999874 3578899999999999
Q ss_pred ChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Q psy4347 599 LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHR 678 (816)
Q Consensus 599 l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHr 678 (816)
++ .|.+-..|+|..-. =-.-||||+|||+++||.++++|+.-+|||+|||+.++.|..|.++.++. |.+.|-||||
T Consensus 593 L~-~i~qr~~g~da~~d-Wkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithr 668 (728)
T KOG0064|consen 593 LE-HILQREGGWDAVRD-WKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHR 668 (728)
T ss_pred HH-HHHHhccChhhhcc-HHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecC
Confidence 96 46666777776544 22469999999999999999999999999999999999999999999886 8999999999
Q ss_pred hhHHHh
Q psy4347 679 LSTIKH 684 (816)
Q Consensus 679 ls~i~~ 684 (816)
++..+.
T Consensus 669 pslwk~ 674 (728)
T KOG0064|consen 669 PSLWKY 674 (728)
T ss_pred ccHHHH
Confidence 998754
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=8.5e-30 Score=293.72 Aligned_cols=193 Identities=26% Similarity=0.407 Sum_probs=151.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|+ ++++|+|+||++.+|+++||||+||||||||+|+|.|...|++|+|...+. + .|
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-~----------~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-L----------RV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-c----------eE
Confidence 489999999995 478999999999999999999999999999999999999999999999873 1 48
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCCCCCH--HHHHHHH------------------HH-------cCChhHHHhC--CCCc
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDKSKSY--EETIEAA------------------KL-------ADLHNSIIKW--PNHY 610 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~~~~~--~~i~~a~------------------~~-------a~l~~~I~~L--P~Gy 610 (816)
+|++|++.+.+. ||.+.+..+...... .+..++. .. +.+......| |.-
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 999999999955 999999876532110 0111100 00 0001111111 111
Q ss_pred cccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEE
Q psy4347 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 611 dT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
++++ .+||||||-|++|||||+.+|++|+|||||.+||.++..-+.+.|.+. +| |+|+|||+-..+.+++.+|+
T Consensus 148 ~~~~----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 148 DRPV----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred cCch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheE
Confidence 4444 469999999999999999999999999999999999999999999875 45 99999999999999886665
Q ss_pred EEcC
Q psy4347 691 HRKT 694 (816)
Q Consensus 691 ~~g~ 694 (816)
+...
T Consensus 222 ~ld~ 225 (530)
T COG0488 222 ELDR 225 (530)
T ss_pred EecC
Confidence 5433
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=5.7e-30 Score=306.46 Aligned_cols=214 Identities=20% Similarity=0.223 Sum_probs=151.3
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC---CCCcceEEECCEeCCCCC--h-
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF---EPNAGAIYIDGKNINDVD--L- 553 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~---~p~~G~I~idG~di~~~~--~- 553 (816)
..|+++||+|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|++|+|.+.++++...+ .
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 35999999999964 56999999999999999999999999999999999864 589999987665432211 1
Q ss_pred -----------HHHhhccEEEcCCCCcccccHHHHHhcCC-CCCCH----HHHHHHHHHcCCh----------hHHHhCC
Q psy4347 554 -----------DSLRRHIAIVPQDPVLFHDTILYNINYGD-KSKSY----EETIEAAKLADLH----------NSIIKWP 607 (816)
Q Consensus 554 -----------~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~-~~~~~----~~i~~a~~~a~l~----------~~I~~LP 607 (816)
..+++.+++++|++.+...+..+|..... ...+. +++.++.+..++. +.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 12356689999987665434444432210 00111 2222222222211 111111
Q ss_pred CCccc-cccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-c
Q psy4347 608 NHYET-QVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-L 685 (816)
Q Consensus 608 ~GydT-~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~ 685 (816)
|++. .....-.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 1110 111122579999999999999999999999999999999999999999999887 6899999999999987 4
Q ss_pred c-------CeEE-EEcChhHHhh
Q psy4347 686 L-------GYKA-HRKTSTNLVR 700 (816)
Q Consensus 686 d-------g~i~-~~g~~~~L~~ 700 (816)
| |+++ ..|++++..+
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHHH
Confidence 4 6664 3556555443
No 365
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.6e-29 Score=245.65 Aligned_cols=189 Identities=27% Similarity=0.448 Sum_probs=159.0
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
++.+|++..- .+..++.++||++.+||.+-|+||||||||||+++|+|+.+|++|+|+++|.++... .+++++.+-
T Consensus 3 L~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~-~~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYHQALL 78 (209)
T ss_pred chhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-hhhHHHHHH
Confidence 3445555443 357899999999999999999999999999999999999999999999999999764 455688888
Q ss_pred EEcCCCCcc-cccHHHHHhcCCC---CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 562 IVPQDPVLF-HDTILYNINYGDK---SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 562 ~V~Q~~~LF-~~Ti~eNi~~~~~---~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
|+--.+-+= ..|+.||+.|... ..+++.+++|+..+++.++ ..+| + .+||-||+.|+||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcC
Confidence 888888777 5599999998743 2457899999999999775 3444 3 3699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH-hcCCCEEEEEecChhHHHhc
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIKHL 685 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~-~~~~~T~i~IaHrls~i~~~ 685 (816)
.+|+.||||||++||.+.+..+...+.. ..+|-.||..||..--+..+
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a 196 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASA 196 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCcc
Confidence 9999999999999999999999988866 45677888889987655443
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=276.38 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=165.2
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
+.-++++||+|+|++ ++++++++||.|.+|+++|||||||+|||||+|+|+|-..|.+|+|.++-. +
T Consensus 319 ~~vl~~~~~~~~y~~--~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------- 385 (530)
T ss_pred CeeEEEeccccccCC--CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------
Confidence 345999999999976 478999999999999999999999999999999999999999999988542 3
Q ss_pred ccEEEcCCC-Ccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 559 HIAIVPQDP-VLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 559 ~i~~V~Q~~-~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
.|||.+|+. .++ +.|+.|++.-..|+..+.++...+...++...-. .++| ..||||||-|+.+|+.++
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~------~~~v----~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ------EKPV----GVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH------hCch----hhcCHhHHHHHHHHHHhc
Confidence 489999997 455 4499999998777666789999999888854332 2233 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEEcC
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHRKT 694 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~g~ 694 (816)
.+|.+|||||||.+||.++...+.++|.+. .-|+|+|||+-..+....-+|.+...
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 999999999999999999999999999987 56999999999999998866665543
No 367
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3.9e-28 Score=249.91 Aligned_cols=184 Identities=26% Similarity=0.372 Sum_probs=151.5
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHH
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~ 575 (816)
+.++|+||||++.+||.+||||+||||||||+|+|+|.|+|++|+|.++|.--.-++. ..|+-| +.|-+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchH
Confidence 4679999999999999999999999999999999999999999999999962211111 123222 25889
Q ss_pred HHHhcC-----CC-CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q psy4347 576 YNINYG-----DK-SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649 (816)
Q Consensus 576 eNi~~~-----~~-~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts 649 (816)
|||.+- -. ..-++.+.+..+.|.|.|||.. | | .+.|-|++-|+|+|=|.-.+|+|||+||..|
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P------v----ktYSSGM~aRLaFsia~~~~pdILllDEvla 176 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P------V----KTYSSGMYARLAFSVATHVEPDILLLDEVLA 176 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c------h----hhccHHHHHHHHHhhhhhcCCCEEEEehhhh
Confidence 999753 11 1123556677788899998743 3 3 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhcc--------CeEEEEcChhHHhhc
Q psy4347 650 SLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLL--------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 650 ~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L~~~ 701 (816)
..|+.=.++=.+.++++ .+++|+|+|||+++.|+..| |+|...|+.++..+.
T Consensus 177 vGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 177 VGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 99999998888888887 67899999999999998866 899999998888753
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=5e-28 Score=252.99 Aligned_cols=176 Identities=24% Similarity=0.316 Sum_probs=114.5
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHH-HHHhcCCCCCcceEEEC-C------EeCCCC---ChHHHhh-ccEEE
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTII-RLLYRFFEPNAGAIYID-G------KNINDV---DLDSLRR-HIAIV 563 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~-~ll~gl~~p~~G~I~id-G------~di~~~---~~~~lr~-~i~~V 563 (816)
+.++|+||||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+ +...++. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 56799999999999999999999999999996 4443 13443221 0 111001 1111221 23444
Q ss_pred cCCCC-ccc--cc---HHHHHhcCC---CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 564 PQDPV-LFH--DT---ILYNINYGD---KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 564 ~Q~~~-LF~--~T---i~eNi~~~~---~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
.|++. .++ .+ +.+...+.. .....++..+.++..++.+. .......+||||||||++||||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHH
Confidence 45443 111 12 222222111 11111222334444444221 2344557899999999999999
Q ss_pred hccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc
Q psy4347 635 ILKNT--PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 635 ll~~p--~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d 686 (816)
|+.+| ++|||||||++||+.+...+.+.|+++. ++.|+|+|||+++.+..||
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d 206 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAAD 206 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCC
Confidence 99998 5999999999999999999999998863 5789999999999987655
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=1.6e-28 Score=251.55 Aligned_cols=160 Identities=26% Similarity=0.305 Sum_probs=128.8
Q ss_pred eeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC---------cceEEECCEeCCCCChHHHhhccEEEcCCCCccc
Q psy4347 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---------AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH 571 (816)
Q Consensus 501 ~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~---------~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~ 571 (816)
++++|++++| +++|+||||||||||++.|.++..|. .|++.++|.++... ..++.|++|||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 5789999999 99999999999999999999998665 34688888877542 2467899999999888
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc----cCCCEEEEeCC
Q psy4347 572 DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL----KNTPILVFDEA 647 (816)
Q Consensus 572 ~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll----~~p~iLiLDE~ 647 (816)
|+.. ..+++.++++. ++-.+ .....||||||||++||||++ .+|+++|||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 23455555554 11122 233579999999999999986 56799999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEE
Q psy4347 648 TSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 648 Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
|++||+.+...+.+.|+++.++.|+|+|||+++.+..+| +++
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d-~v~ 186 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAAD-RLY 186 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcc-eEE
Confidence 999999999999999999877899999999999987665 443
No 370
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8e-28 Score=234.35 Aligned_cols=210 Identities=21% Similarity=0.344 Sum_probs=159.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECC-----EeCCCCChHH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG-----KNINDVDLDS 555 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG-----~di~~~~~~~ 555 (816)
-++++++|..|++ ..--+||||++-|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+..++..+
T Consensus 6 LL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 4789999999975 4578999999999999999999999999999999999999999999965 3444444333
Q ss_pred ----HhhccEEEcCCCC--cc-c----ccHHHHHh-cCCCCCC--HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCC
Q psy4347 556 ----LRRHIAIVPQDPV--LF-H----DTILYNIN-YGDKSKS--YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKL 621 (816)
Q Consensus 556 ----lr~~i~~V~Q~~~--LF-~----~Ti~eNi~-~~~~~~~--~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~L 621 (816)
+|..-|+|.|+|. |= . +.|-|-+. .|..... .++..+-++.+.++ .+.+.+....+
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~----------~~RiDD~PrtF 152 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID----------LDRIDDLPRTF 152 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC----------cccccCccccc
Confidence 4557899999984 11 1 12333221 1211111 12223333444332 12334444899
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc--------CeEEE
Q psy4347 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL--------GYKAH 691 (816)
Q Consensus 622 SGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d--------g~i~~ 691 (816)
|||++||+-|||-|+..|++.++||||-+||...++.+++.++.+.. +-.+++|||++..++-.. |+++|
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 99999999999999999999999999999999999999999987644 679999999999987654 99999
Q ss_pred EcChhHHhhcCc
Q psy4347 692 RKTSTNLVRGNS 703 (816)
Q Consensus 692 ~g~~~~L~~~~~ 703 (816)
.|-.+.++....
T Consensus 233 ~GLTDrvLDDP~ 244 (258)
T COG4107 233 SGLTDRVLDDPH 244 (258)
T ss_pred cccccccccCCC
Confidence 998888877654
No 371
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=232.22 Aligned_cols=204 Identities=24% Similarity=0.360 Sum_probs=155.2
Q ss_pred cEEEEeeEEEeC----CCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECC----EeCCCCC
Q psy4347 481 SIEFRDVNFSYI----DKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG----KNINDVD 552 (816)
Q Consensus 481 ~I~~~~vsf~Y~----~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG----~di~~~~ 552 (816)
.+.++||+++|. ++-.-||++|+||+++.||++++=||||+|||||++.|.+-|.|++|+|++.- .|+-...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 378889988773 11235899999999999999999999999999999999999999999999853 3444444
Q ss_pred hHH----HhhccEEEcCCCCccc-cc----HHHHH-hcCCCC-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCC
Q psy4347 553 LDS----LRRHIAIVPQDPVLFH-DT----ILYNI-NYGDKS-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKL 621 (816)
Q Consensus 553 ~~~----lr~~i~~V~Q~~~LF~-~T----i~eNi-~~~~~~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~L 621 (816)
+.. -|+.||||+|---... -+ +.|-+ ..|-+. ...+.....+...++.+-+-+||- ..+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaP----------aTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAP----------ATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCC----------ccc
Confidence 432 3667999999422111 11 22222 233221 112333444456677777777763 689
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhccCeEEEEcC
Q psy4347 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLLGYKAHRKT 694 (816)
Q Consensus 622 SGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~dg~i~~~g~ 694 (816)
||||+||+-|||+++-|-+||+|||||++||..+.+.+.+.|++. .+|..+|=|=|+-+.=....+|+.+.+.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999999874 5689999999998877776778776654
No 372
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=6.6e-28 Score=249.94 Aligned_cols=195 Identities=27% Similarity=0.342 Sum_probs=150.2
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEc-CCCCcc-cccH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVP-QDPVLF-HDTI 574 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~-Q~~~LF-~~Ti 574 (816)
.++.+||||+||+|++++++|+||+||||++|+|.|+..|++|.|.++|.+-.+ +.+++-+++++|+ |...|. .-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence 468999999999999999999999999999999999999999999999987655 3455555666654 444443 2234
Q ss_pred HHHHhcCCC--CCCHHH----HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q psy4347 575 LYNINYGDK--SKSYEE----TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648 (816)
Q Consensus 575 ~eNi~~~~~--~~~~~~----i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~T 648 (816)
.|-+..... ++++++ .....+..++ +..+-..-..||-|||-|..||-||+++|+||+|||||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl-----------~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDL-----------EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcc-----------hhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 443322110 223322 2222233333 33344455789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh--cCCCEEEEEecChhHHHhcc--------CeEEEEcChhHHhhcCc
Q psy4347 649 SSLDSITENNILSSLKTA--SRNKTTICIAHRLSTIKHLL--------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 649 s~LD~~te~~i~~~l~~~--~~~~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L~~~~~ 703 (816)
-+||......|.+.+++. ..++|++..||.++-+..-+ |+++..|+-++|.+.-+
T Consensus 185 vgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 185 VGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999875 45799999999999987754 88898888888877644
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=6.1e-27 Score=249.14 Aligned_cols=180 Identities=24% Similarity=0.365 Sum_probs=132.4
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh-----c-CC----CCCcc-----------eEEECCEeCCCCC---
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY-----R-FF----EPNAG-----------AIYIDGKNINDVD--- 552 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~-----g-l~----~p~~G-----------~I~idG~di~~~~--- 552 (816)
...|+|||++||.|+.++|+|+||||||||++.++ + +. .|..+ -|.+|..+|..-.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999998663 1 22 13322 3677776665421
Q ss_pred h-------HHHhh----------------ccEEEcCCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCC
Q psy4347 553 L-------DSLRR----------------HIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPN 608 (816)
Q Consensus 553 ~-------~~lr~----------------~i~~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~ 608 (816)
+ +.+|+ .+.|..++...+ +.|+.||+.|.......++..++++..++.+.
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l------ 161 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI------ 161 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh------
Confidence 1 11121 244455554433 56888888776432233455555555555321
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh
Q psy4347 609 HYETQVGERGLKLSGGEKQRVAIARAILKN---TPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH 684 (816)
Q Consensus 609 GydT~VGE~G~~LSGGqrQRiaiARAll~~---p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~ 684 (816)
..++...+|||||+||++|||||+++ |+++||||||++||+.+...+.+.|+++. +|.|+|+|+|++..++.
T Consensus 162 ----~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 162 ----KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred ----hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 34666789999999999999999996 79999999999999999999999998865 47999999999999987
Q ss_pred cc
Q psy4347 685 LL 686 (816)
Q Consensus 685 ~d 686 (816)
||
T Consensus 238 aD 239 (261)
T cd03271 238 AD 239 (261)
T ss_pred CC
Confidence 76
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.5e-27 Score=248.24 Aligned_cols=191 Identities=21% Similarity=0.275 Sum_probs=136.0
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh----------------cCCCCCcc-----
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY----------------RFFEPNAG----- 539 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~----------------gl~~p~~G----- 539 (816)
.|+++|. .+|.+ ..++++++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3666664 34643 56788877 8999999999999999999998 44555566
Q ss_pred ---eEEECCEeCCC-C--ChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHH--HhCCCCcc
Q psy4347 540 ---AIYIDGKNIND-V--DLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSI--IKWPNHYE 611 (816)
Q Consensus 540 ---~I~idG~di~~-~--~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I--~~LP~Gyd 611 (816)
+|.+++.+-.. + +...+++.+++++|+..++. ...+.+++..+++..++...- ..+|+|..
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i 142 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKI 142 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCch
Confidence 66666532211 0 12345667888887766543 224556777777776664311 01233322
Q ss_pred -------ccccCCCCCCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 612 -------TQVGERGLKLSGGEKQRVAIARAIL----KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 612 -------T~VGE~G~~LSGGqrQRiaiARAll----~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
....+.+..||||||||++||||++ .+|+++||||||++||+.+.+.+.+.|+++.++.|+|+++|+.+
T Consensus 143 ~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~ 222 (243)
T cd03272 143 NSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE 222 (243)
T ss_pred HHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 2235678899999999999999996 46899999999999999999999999999877888899999977
Q ss_pred HHHhccCeEEEE
Q psy4347 681 TIKHLLGYKAHR 692 (816)
Q Consensus 681 ~i~~~dg~i~~~ 692 (816)
....| ++|+..
T Consensus 223 ~~~~~-d~i~~l 233 (243)
T cd03272 223 LLEVA-DKFYGV 233 (243)
T ss_pred HHhhC-CEEEEE
Confidence 65544 555543
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=2.8e-27 Score=244.97 Aligned_cols=188 Identities=15% Similarity=0.150 Sum_probs=142.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEee-CCcEEEEeCCCCCchhHHHHHHh-cCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIP-AGKSVAIVGGSGSGKSTIIRLLY-RFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~-~Ge~vaivG~sGsGKSTl~~ll~-gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
.|+++|+. +|.+ . ++|+|+.. +|++++|+||||||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~---~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFRE---E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCC---c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999998 7743 1 56777754 59999999999999999999999 5777777777654 2223344455677
Q ss_pred ccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCC-ccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 559 HIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNH-YETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~G-ydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
.|++++|++.-. ..+++++ ..+.++..+... ++.| +++.+...+.+||||||||++|||||+.
T Consensus 77 ~v~~~f~~~~~~----~~~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKK----YRVERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeE----EEEEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 899999987322 2223333 344444444321 2222 4556667778999999999999999974
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHhccCeEEEE
Q psy4347 638 ----------NTPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 638 ----------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..+|.+++..
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~ 206 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVI 206 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEE
Confidence 6789999999999999999999999988755 789999999999999888777553
No 376
>KOG0059|consensus
Probab=99.93 E-value=5.2e-26 Score=278.88 Aligned_cols=214 Identities=21% Similarity=0.362 Sum_probs=184.9
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC-ChHHHhh
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV-DLDSLRR 558 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~-~~~~lr~ 558 (816)
..+..+|+++.|+.+ ..+++++||.|++||+.++.|+|||||||++|++.|...|++|++.++|.|+..- +....++
T Consensus 563 ~~~~~~~L~k~y~~~--~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK--DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecch--hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 358899999999762 2299999999999999999999999999999999999999999999999999864 4456999
Q ss_pred ccEEEcCCCCccc-ccHHHHHhcCC-----CCCC-HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 559 HIAIVPQDPVLFH-DTILYNINYGD-----KSKS-YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 559 ~i~~V~Q~~~LF~-~Ti~eNi~~~~-----~~~~-~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
++||+||+..|+. .|.||.+.+.. +..+ .+.+.+.++..++.+... +++ ..+|||+|.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-------~~~----~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-------KQV----RTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-------cch----hhCCCcchhhHHH
Confidence 9999999999995 59999997642 2112 234677778888876543 332 5899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-CEEEEEecChhHHHhcc--------CeEEEEcChhHHhhcC
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN-KTTICIAHRLSTIKHLL--------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~-~T~i~IaHrls~i~~~d--------g~i~~~g~~~~L~~~~ 702 (816)
|-|++-+|++++|||||+++||.+++.+.+.+.+++++ +.+|+.||-++..+..+ |++...|+.++|-.+-
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 99999999999999999999999999999999998764 49999999999998865 9999999999998776
Q ss_pred chhh
Q psy4347 703 SSAM 706 (816)
Q Consensus 703 ~~~~ 706 (816)
|..|
T Consensus 790 G~gy 793 (885)
T KOG0059|consen 790 GSGY 793 (885)
T ss_pred CCcE
Confidence 6655
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=4e-26 Score=242.05 Aligned_cols=196 Identities=19% Similarity=0.224 Sum_probs=143.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-cceEEECCE-eCCCCC-h-HHH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDGK-NINDVD-L-DSL 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-~G~I~idG~-di~~~~-~-~~l 556 (816)
.|+++|. .+|.+ ..++.++ ...+++||||||||||||++.|++++.|+ .|+++..|. |+-... . ..-
T Consensus 5 ~~~~~~f-~~~~~---~~~~~~~-----~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~ 75 (251)
T cd03273 5 EIILDGF-KSYAT---RTVISGF-----DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGIT 75 (251)
T ss_pred EEEEeCc-cccCc---CEeeccC-----CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCc
Confidence 4677776 55632 2222122 25689999999999999999999999887 568998887 542211 1 123
Q ss_pred hhccEEEcCCCC---------cc-cccHHHHHhcCCC--------CCCHHHHHHHHHHcCCh----hH---------HHh
Q psy4347 557 RRHIAIVPQDPV---------LF-HDTILYNINYGDK--------SKSYEETIEAAKLADLH----NS---------IIK 605 (816)
Q Consensus 557 r~~i~~V~Q~~~---------LF-~~Ti~eNi~~~~~--------~~~~~~i~~a~~~a~l~----~~---------I~~ 605 (816)
+..|++++|++. +. .-||.+||.++.. ....+++.++++.+++. .| |.+
T Consensus 76 ~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 76 KASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 458999999852 22 4588888765421 12457888888888874 11 111
Q ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhH
Q psy4347 606 WPNHYETQVGERGLKLSGGEKQRVAIARAIL----KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLST 681 (816)
Q Consensus 606 LP~GydT~VGE~G~~LSGGqrQRiaiARAll----~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~ 681 (816)
++ ........+||||||||++|||||+ .+|+++||||||++||+.+...+.+.|+++.++.|+|+|||+.+.
T Consensus 156 ~~----~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~ 231 (251)
T cd03273 156 MG----GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGM 231 (251)
T ss_pred hH----HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 11 2233455789999999999999997 688999999999999999999999999998788999999999888
Q ss_pred HHhccCeEE
Q psy4347 682 IKHLLGYKA 690 (816)
Q Consensus 682 i~~~dg~i~ 690 (816)
+..|| +++
T Consensus 232 ~~~~d-~v~ 239 (251)
T cd03273 232 FNNAN-VLF 239 (251)
T ss_pred HHhCC-EEE
Confidence 88765 554
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=8.6e-25 Score=225.22 Aligned_cols=160 Identities=24% Similarity=0.239 Sum_probs=126.4
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHh----cCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCC-----Cccc-cc
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLY----RFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP-----VLFH-DT 573 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~----gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~-----~LF~-~T 573 (816)
++++.+| +++|+||||||||||++.|. |...|+.|.+..+...+ .....+..|++++|++ .++. -|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4566677 99999999999999999994 98889888776222222 2234567899999998 4453 39
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH------HHHHHHhccCCCEEEEeCC
Q psy4347 574 ILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR------VAIARAILKNTPILVFDEA 647 (816)
Q Consensus 574 i~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR------iaiARAll~~p~iLiLDE~ 647 (816)
+.||+.++. .+++.+.+ .+...+||+||+|| ++||||++.+|+++|||||
T Consensus 93 ~~~~~~~~~----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 93 ILENVIFCH----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred Hhhceeeec----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 999998752 33443332 33447899999996 7999999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHhcC--CCEEEEEecChhHHHhccCeEEEE
Q psy4347 648 TSSLDSITEN-NILSSLKTASR--NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 648 Ts~LD~~te~-~i~~~l~~~~~--~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|++||+.+.. .+.+.|+++.+ ++|+|+|||++..+..|| ++...
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d-~i~~l 195 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD-HIYRV 195 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCC-EEEEE
Confidence 9999999999 99999988765 789999999999887776 55443
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=2.7e-25 Score=230.33 Aligned_cols=181 Identities=20% Similarity=0.228 Sum_probs=134.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHh-hc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR-RH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr-~~ 559 (816)
.|+++|.- +|. +..++++++| ++++|+|||||||||++++|. .++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 47888875 774 3679999988 899999999999999999997 34565432 334 57
Q ss_pred cEEEcCCCCcccc-cHHHHHhcCCCCCCHHHH-----HHHH-H---HcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 560 IAIVPQDPVLFHD-TILYNINYGDKSKSYEET-----IEAA-K---LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 560 i~~V~Q~~~LF~~-Ti~eNi~~~~~~~~~~~i-----~~a~-~---~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+++++|+..++.. |.++++.+.......+.. .... + ..+-...+..||++.++.++ .||+|||||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~~r~ 136 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEKTLS 136 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHHHHH
Confidence 9999999887754 777777665421111100 0000 0 01122245667888888754 6999999999
Q ss_pred HHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEE
Q psy4347 630 AIARAILK----NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 630 aiARAll~----~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
+||||++. +|++++|||||++||+.+...+.+.|+++.++.|+|+|||+.+..+.|| +++
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d-~v~ 200 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELAD-RLV 200 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCC-EEE
Confidence 99999963 5899999999999999999999999999888899999999987666665 444
No 380
>KOG0927|consensus
Probab=99.91 E-value=1.3e-24 Score=242.36 Aligned_cols=185 Identities=25% Similarity=0.344 Sum_probs=156.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
.-|-|.||+|+|++ +..+++++||-|..++.+|+|||||+|||||+|+++|...|+.|.|.-.-+..
T Consensus 388 pvi~~~nv~F~y~~--~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~----------- 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD--NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK----------- 454 (614)
T ss_pred CeEEEeccccCCCC--cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc-----------
Confidence 46999999999986 45899999999999999999999999999999999999999999987654432
Q ss_pred cEEEcCC---CCcccccHHHHHhcCCC-CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 560 IAIVPQD---PVLFHDTILYNINYGDK-SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 560 i~~V~Q~---~~LF~~Ti~eNi~~~~~-~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
+++-.|+ -..++.|..|++.---+ ..+.+++...+...|+....+..|. .+||+|||.||++||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHH
Confidence 2333332 34457788888864333 3567889999999999876666664 58999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeE
Q psy4347 636 LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYK 689 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i 689 (816)
++.|.||+|||||++||.++-....++|.+. .-++|+|+|+...|.....+|
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi 576 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEI 576 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHh
Confidence 9999999999999999999999999999987 568999999999998876443
No 381
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.90 E-value=5.1e-21 Score=198.04 Aligned_cols=221 Identities=23% Similarity=0.305 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 192 SSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALIS 271 (816)
Q Consensus 192 ~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~~ 271 (816)
...+.....+...+.+.++..++|.++++|++++|.+||+++++|++.+|+++|.+.+++.....+..++..++.+++ .
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~-~ 132 (275)
T PF00664_consen 54 IFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF-S 132 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhh-h
Confidence 344445555667889999999999999999999999999999999999999999999998887776666665554433 3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHHHHHHH
Q psy4347 272 SILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKK 351 (816)
Q Consensus 272 ~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~~~~~~ 351 (816)
+++++.++|.++++++++.|++.++...+.++.++..++.+++.++.++.+.|.++|+++||+||.|+++.++|++..++
T Consensus 133 ~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~ 212 (275)
T PF00664_consen 133 LILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEK 212 (275)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 45567789999999999999998888888888888888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHH
Q psy4347 352 YEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAARE-IAHGNLTVGDLVMVNGLLFQL 430 (816)
Q Consensus 352 ~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~l-V~~G~ltvG~lvaf~~~~~~l 430 (816)
..+...+. ............++..+..++++++|+++ +.+|.+|+|+++++..+..++
T Consensus 213 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~ 271 (275)
T PF00664_consen 213 YRKASFKY---------------------AKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQL 271 (275)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence 88887776 34444555566667777778889999999 999999999999999999999
Q ss_pred HHHH
Q psy4347 431 SMPL 434 (816)
Q Consensus 431 ~~pl 434 (816)
..|+
T Consensus 272 ~~pl 275 (275)
T PF00664_consen 272 INPL 275 (275)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9986
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=4.8e-24 Score=208.32 Aligned_cols=201 Identities=25% Similarity=0.356 Sum_probs=169.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
+.++||+..- =|-.+|.++.+||.+=+|||||||||||+--+.|+. |-+|+|.++|.|+..++..++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5667775322 256789999999999999999999999999999987 78999999999999999999999999
Q ss_pred EEcCC-CCcccccHHHHHhcCCCCCC-HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc--
Q psy4347 562 IVPQD-PVLFHDTILYNINYGDKSKS-YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK-- 637 (816)
Q Consensus 562 ~V~Q~-~~LF~~Ti~eNi~~~~~~~~-~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~-- 637 (816)
|..|+ ...|...|..-+++..|+.+ .+++.+.|++.+++| .+|..-.+|||||.||+-+|-..+.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEec
Confidence 98876 56899999999999888532 245666777766655 3444557999999999999987764
Q ss_pred ---CC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChh-HHHhcc-------CeEEEEcChhHHhhc
Q psy4347 638 ---NT--PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLS-TIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 638 ---~p--~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls-~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
|| ++||+|||.++||...+..+-..|.++. .|.|+|+..|++. |+++|| |++...|.-+|++..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 44 7999999999999999999888887764 5899999999994 889999 999999999998865
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.90 E-value=6.8e-23 Score=249.69 Aligned_cols=91 Identities=27% Similarity=0.426 Sum_probs=82.2
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc--
Q psy4347 613 QVGERGLKLSGGEKQRVAIARAILKNT---PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL-- 686 (816)
Q Consensus 613 ~VGE~G~~LSGGqrQRiaiARAll~~p---~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-- 686 (816)
.++.....||||||||++|||||+++| +++||||||++||+.+...+.+.|+++. +|.|+|+|+|++..+..||
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 357778899999999999999999999 9999999999999999999999998874 5799999999999998887
Q ss_pred -----------CeEEEEcChhHHhhcCc
Q psy4347 687 -----------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 687 -----------g~i~~~g~~~~L~~~~~ 703 (816)
|+|+..|+++++.+...
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 78888899888876553
No 384
>KOG0065|consensus
Probab=99.90 E-value=1.8e-23 Score=252.92 Aligned_cols=192 Identities=24% Similarity=0.316 Sum_probs=161.2
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC--CcceEEECCEeCCCCChHHHhhccEEEcCCCC-cccc
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP--NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPV-LFHD 572 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p--~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~-LF~~ 572 (816)
.+.+|+|||=-++||..+|++|+||||||||++.|+|--.- .+|+|+|||.+..+ +..++.+|||.|++. +=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 46799999999999999999999999999999999987532 58999999998764 789999999999764 4466
Q ss_pred cHHHHHhcC----CC-CCCHH----HHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC-CEE
Q psy4347 573 TILYNINYG----DK-SKSYE----ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT-PIL 642 (816)
Q Consensus 573 Ti~eNi~~~----~~-~~~~~----~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p-~iL 642 (816)
||||-+.|. .| +.+++ -++++.+..++.+. =|..||.-|..||..||.|+.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 999999875 12 23333 35666677666544 366799999999999999999999999999 889
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHH--Hhcc--------CeEEEEcChhH
Q psy4347 643 VFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTI--KHLL--------GYKAHRKTSTN 697 (816)
Q Consensus 643 iLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i--~~~d--------g~i~~~g~~~~ 697 (816)
+||||||+||+++...|.+.++++ ..|+|+++.=|.+|.. +..| |+.|-.|+-.+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999999999986 4699999999999864 5566 99988886443
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=2.2e-23 Score=220.73 Aligned_cols=202 Identities=18% Similarity=0.180 Sum_probs=138.6
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEe-C-C-----CCCh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN-I-N-----DVDL 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~d-i-~-----~~~~ 553 (816)
.|+++|. .+|.+ .. +|...++ .++|+||||||||||+..|.++..|+.|+++.++.+ + . ..+.
T Consensus 3 ~i~l~nf-~~~~~---~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~ 72 (247)
T cd03275 3 RLELENF-KSYKG---RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDS 72 (247)
T ss_pred EEEEECc-cccCC---Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCC
Confidence 4777775 45632 11 2222334 999999999999999999999999888888765431 1 1 1111
Q ss_pred HHHhhccEEEcCCC--CcccccHHHHHh---cCCCCCCHHHHHHHHHHcCChhHHHh--CCCCccccccCCC--------
Q psy4347 554 DSLRRHIAIVPQDP--VLFHDTILYNIN---YGDKSKSYEETIEAAKLADLHNSIIK--WPNHYETQVGERG-------- 618 (816)
Q Consensus 554 ~~lr~~i~~V~Q~~--~LF~~Ti~eNi~---~~~~~~~~~~i~~a~~~a~l~~~I~~--LP~GydT~VGE~G-------- 618 (816)
....-.+.+..|++ .++..+++++-. +.....+.+++.+.++..+++.+... +|+|-=+.+.+..
T Consensus 73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~ 152 (247)
T cd03275 73 NSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRD 152 (247)
T ss_pred ceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhh
Confidence 23333455555553 234445444321 12234567788888888888533211 3444434443322
Q ss_pred -CCCChhHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHhccCeEEEE
Q psy4347 619 -LKLSGGEKQRVAIARAILKN----TPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 619 -~~LSGGqrQRiaiARAll~~----p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
.+||||||||++||||++.+ |+++||||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.+..||--++..
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 67999999999999999864 899999999999999999999999998755 789999999999888776444433
No 386
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.89 E-value=1.6e-22 Score=255.64 Aligned_cols=205 Identities=21% Similarity=0.328 Sum_probs=145.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHH---------HHhcCCCCCcc--------eEEE
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIR---------LLYRFFEPNAG--------AIYI 543 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~---------ll~gl~~p~~G--------~I~i 543 (816)
.|+++|++. ..|+|+||+|++||+++|+|+||||||||++ +|.|...|..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 588888751 3699999999999999999999999999999 56664333211 2455
Q ss_pred CCEeCCCCC----------hHHHh---------hcc-----EEEcCC------------------C--------------
Q psy4347 544 DGKNINDVD----------LDSLR---------RHI-----AIVPQD------------------P-------------- 567 (816)
Q Consensus 544 dG~di~~~~----------~~~lr---------~~i-----~~V~Q~------------------~-------------- 567 (816)
|-.++..-. .+.+| +.. .+.+|. +
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 544443211 01344 111 123332 0
Q ss_pred ------Ccccc-cHHHHHhcCCCCC-----CHHHHHHHHHHcCChhHHHhCCCCcccc-ccCCCCCCChhHHHHHHHHHH
Q psy4347 568 ------VLFHD-TILYNINYGDKSK-----SYEETIEAAKLADLHNSIIKWPNHYETQ-VGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 568 ------~LF~~-Ti~eNi~~~~~~~-----~~~~i~~a~~~a~l~~~I~~LP~GydT~-VGE~G~~LSGGqrQRiaiARA 634 (816)
..|.+ ||.||+.++...+ +.+++.+.++ .+..+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 13433 8999998763311 1223333221 12221 55554 577778999999999999999
Q ss_pred hc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-------------CeEEEEcChhH
Q psy4347 635 IL---KNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL-------------GYKAHRKTSTN 697 (816)
Q Consensus 635 ll---~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------------g~i~~~g~~~~ 697 (816)
|+ ++|++|||||||++||+.+.+.+.+.|+++. +|.|+|+|+|++..+..+| |+++..|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998864 5899999999999997776 68999999999
Q ss_pred Hhhc
Q psy4347 698 LVRG 701 (816)
Q Consensus 698 L~~~ 701 (816)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 8753
No 387
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2.1e-22 Score=227.89 Aligned_cols=204 Identities=24% Similarity=0.337 Sum_probs=161.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
.++++|++.. ..++|+||++++||+++|.|--|||+|-+++.|.|..++.+|+|.+||.++.-.++ +.++..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4788888632 25889999999999999999999999999999999999999999999999988776 578999
Q ss_pred cEEEcCCC---Ccc-cccHHHHHhcCCCCC-C-HHHHHHHHHHcCChhHHHhCC---CCccccccCCCCCCChhHHHHHH
Q psy4347 560 IAIVPQDP---VLF-HDTILYNINYGDKSK-S-YEETIEAAKLADLHNSIIKWP---NHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 560 i~~V~Q~~---~LF-~~Ti~eNi~~~~~~~-~-~~~i~~a~~~a~l~~~I~~LP---~GydT~VGE~G~~LSGGqrQRia 630 (816)
|+|||.|- -|| ..||++||++..... . .--+....+.+-..+++.+|- .+.+.++ .+||||-+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHH
Confidence 99999984 366 679999998762110 0 001222333333445555543 2333444 479999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEEcCh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHRKTS 695 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~g~~ 695 (816)
|||.|..+|++|||||||-++|.-+..+|.+.|+++. +|+++|+||-.+..+...++||..+..+
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~G 477 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREG 477 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999864 5899999999999998666555544433
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=4.8e-21 Score=233.21 Aligned_cols=90 Identities=27% Similarity=0.402 Sum_probs=78.0
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHH
Q psy4347 609 HYET-QVGERGLKLSGGEKQRVAIARAILK---NTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIK 683 (816)
Q Consensus 609 GydT-~VGE~G~~LSGGqrQRiaiARAll~---~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~ 683 (816)
|++. .+++...+|||||+||++|||||++ +|+++||||||++||+.+...+.+.|+++. +|.|+|+|+|++..+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4443 3678889999999999999999997 599999999999999999999999998874 5899999999999998
Q ss_pred hcc-------------CeEEEEcChhHH
Q psy4347 684 HLL-------------GYKAHRKTSTNL 698 (816)
Q Consensus 684 ~~d-------------g~i~~~g~~~~L 698 (816)
.|| |+|+..|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 876 567777776654
No 389
>KOG0062|consensus
Probab=99.85 E-value=3.9e-21 Score=213.66 Aligned_cols=197 Identities=23% Similarity=0.331 Sum_probs=145.2
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEe--CCCCChHHH
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN--INDVDLDSL 556 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~d--i~~~~~~~l 556 (816)
..+|..++++.+|++ +.+|++-++++..|..+++||+||+|||||++.|.. |.|.+-..+ ++..+..
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~-- 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE-- 146 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH--
Confidence 357999999999964 789999999999999999999999999999999998 444332221 1111111
Q ss_pred hhccEEEcCCCCcccccHHHHHhcCCC---C-CCHHHHHH-HHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 557 RRHIAIVPQDPVLFHDTILYNINYGDK---S-KSYEETIE-AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~~Ti~eNi~~~~~---~-~~~~~i~~-a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
..| ..+-.++-+.-+..-.+ . .+.+||.. ++.-.|..+.....|- .+||||=|-|+|+
T Consensus 147 ------~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaL 209 (582)
T KOG0062|consen 147 ------ALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLAL 209 (582)
T ss_pred ------HHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHH
Confidence 111 11222332322222111 1 14566666 7777788888887774 5899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------C-eE-EEEcChhHHhhcC
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------G-YK-AHRKTSTNLVRGN 702 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g-~i-~~~g~~~~L~~~~ 702 (816)
||||+.+||||+|||||.+||..+..-+.+.|..+ ..|+|+|+|+-+.+-..+ + ++ .-.|++++-.+..
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 99999999999999999999999999999999887 489999999999887765 1 11 2357777777766
Q ss_pred chh
Q psy4347 703 SSA 705 (816)
Q Consensus 703 ~~~ 705 (816)
++.
T Consensus 288 ~E~ 290 (582)
T KOG0062|consen 288 PEA 290 (582)
T ss_pred HHh
Confidence 644
No 390
>KOG0066|consensus
Probab=99.84 E-value=7.1e-21 Score=206.55 Aligned_cols=193 Identities=27% Similarity=0.381 Sum_probs=151.3
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
+-+-+.||+|.||+ .+|.+++++|-|.--..+|||||+|.|||||++||.|-++|+.|+.+=+- |-+
T Consensus 585 PvLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~ 651 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLR 651 (807)
T ss_pred CeeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eee
Confidence 45788999999987 68999999999999999999999999999999999999999999876543 446
Q ss_pred cEEEcCCCC--cc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 560 IAIVPQDPV--LF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 560 i~~V~Q~~~--LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
||+--|... |- ..|-.|-+.-+- +.+.++...++...|+..-- +|. .-..||||||-||++|---+
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHhc
Confidence 888777642 32 336566554221 23456777777666663211 121 12579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc--CeEEEEcChhHH
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL--GYKAHRKTSTNL 698 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d--g~i~~~g~~~~L 698 (816)
..|+||||||||.+||.++-..+-++|++. +-.+|+|+|+-..|...| =-|||.-+-+|+
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhc
Confidence 999999999999999999999999999998 457999999998887665 445655444444
No 391
>KOG0062|consensus
Probab=99.84 E-value=1.7e-20 Score=208.65 Aligned_cols=184 Identities=25% Similarity=0.303 Sum_probs=155.6
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
.+.+++.+|+|.|++. +.+.+.++++.+..-+.+++||++|+||||++|++.+-..|..|.+-+.+ |.
T Consensus 360 ~p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 4579999999999872 23799999999999999999999999999999999999999999988876 56
Q ss_pred ccEEEcCCCCcc-ccc--HHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 559 HIAIVPQDPVLF-HDT--ILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 559 ~i~~V~Q~~~LF-~~T--i~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
+|+|-.|.-.=| +.. ..|-..--.|..+++|+.+.|...|+...+..-|. ..||||||=||++|-+.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si----------~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSI----------ASLSGGQKSRVAFAACT 497 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccc----------cccCCcchhHHHHHHHh
Confidence 789988865433 322 22333323466689999999999998776654431 57999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 636 LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
+.+|.+|+|||||..||.++-..+-++|++. +--||+|||+.+.+...+
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c 546 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLC 546 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcC
Confidence 9999999999999999999999999999987 446999999999999987
No 392
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.84 E-value=4.4e-20 Score=205.60 Aligned_cols=201 Identities=22% Similarity=0.332 Sum_probs=162.4
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeC-CCCChHHHh-
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI-NDVDLDSLR- 557 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di-~~~~~~~lr- 557 (816)
.-++++|++..=.. +.+.++||||+|++||+++|.|-+|-|-+.|+..|+|+.+|.+|+|.++|+|+ ...++...|
T Consensus 256 ~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 45899999976432 45789999999999999999999999999999999999999999999999997 566776654
Q ss_pred hccEEEcCCCC----cccccHHHHHhcCCCC---------CCHHHHHHHHHHcCChhHHHhC---CCCccccccCCCCCC
Q psy4347 558 RHIAIVPQDPV----LFHDTILYNINYGDKS---------KSYEETIEAAKLADLHNSIIKW---PNHYETQVGERGLKL 621 (816)
Q Consensus 558 ~~i~~V~Q~~~----LF~~Ti~eNi~~~~~~---------~~~~~i~~a~~~a~l~~~I~~L---P~GydT~VGE~G~~L 621 (816)
..+||||.|.+ ....|+.||+.++.-. .+..++.+.++.. |+++ +.|-++++ .+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~l-----i~~fdVr~~~~~~~a----~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL-----IEEFDVRAPSPDAPA----RSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHH-----HHHcCccCCCCCcch----hhc
Confidence 57999999863 5577999999876432 2334444443221 2221 33444444 579
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhccCeEEE
Q psy4347 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 622 SGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
|||..||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+. .+|+.+++|+-+|..+...+++|..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaV 475 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAV 475 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeee
Confidence 999999999999999999999999999999999999999998775 4589999999999999876644443
No 393
>KOG0927|consensus
Probab=99.84 E-value=3.4e-20 Score=207.26 Aligned_cols=216 Identities=18% Similarity=0.236 Sum_probs=138.4
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
...|.++|+++.|.+ .++++|++|++.+|+.+||+|++||||||+++.|.|-..|..=++-+-=.+ +++.+..+ +
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~-~ 147 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEK-Q 147 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchH-H
Confidence 346999999999964 789999999999999999999999999999999999988865554331110 11111111 1
Q ss_pred ccEEEcCCCCccccc-----HHHHHhcCCCCCCH---HHHHHHHHHcCChhHHHh----C-CCCccccc-cCCCCCCChh
Q psy4347 559 HIAIVPQDPVLFHDT-----ILYNINYGDKSKSY---EETIEAAKLADLHNSIIK----W-PNHYETQV-GERGLKLSGG 624 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~T-----i~eNi~~~~~~~~~---~~i~~a~~~a~l~~~I~~----L-P~GydT~V-GE~G~~LSGG 624 (816)
.+-+|.+.. ++.. -.|++.-..++.+. +++++-+...+.+.+=.+ | ..|+.... -..-.+||||
T Consensus 148 av~~v~~~~--~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 148 AVQAVVMET--DHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHhhhh--HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 111111100 0000 11222222111111 111111111111111000 0 11222211 2234689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc--------Ce-EEEEcCh
Q psy4347 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL--------GY-KAHRKTS 695 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d--------g~-i~~~g~~ 695 (816)
||-|+++||||+.+|++|+|||||.+||.++..-+-+.|.+.... |+++++|.-.++...+ ++ +.-.|++
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gny 304 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNY 304 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCH
Confidence 999999999999999999999999999999999999999887433 9999999999998877 44 5566777
Q ss_pred hHHhhcC
Q psy4347 696 TNLVRGN 702 (816)
Q Consensus 696 ~~L~~~~ 702 (816)
++.....
T Consensus 305 dqy~~tr 311 (614)
T KOG0927|consen 305 DQYVKTR 311 (614)
T ss_pred HHHhhHH
Confidence 7766544
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=7.2e-21 Score=195.26 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=110.8
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC-ChHHHhhccEEEcCCCCcccccHHHHH
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV-DLDSLRRHIAIVPQDPVLFHDTILYNI 578 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~-~~~~lr~~i~~V~Q~~~LF~~Ti~eNi 578 (816)
++++++++.+| +.+|+||||||||||+..|.-.+..+.+ ....|..+.++ ....-...|.+++|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 45677777777 7799999999999999998754433221 11113211111 01111456888888877665 2
Q ss_pred hcCCCC--CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh----ccCCCEEEEeCCCCCCC
Q psy4347 579 NYGDKS--KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI----LKNTPILVFDEATSSLD 652 (816)
Q Consensus 579 ~~~~~~--~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl----l~~p~iLiLDE~Ts~LD 652 (816)
+. .+.+++.++++. .+-. .+...+||||||||++||||+ +.+|+++||||||++||
T Consensus 84 ----~~~~~~~~~~~~~l~~----------~~~~----~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD 145 (198)
T cd03276 84 ----PLCVLSQDMARSFLTS----------NKAA----VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred ----cCCHHHHHHHHHHhcc----------cccc----CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccC
Confidence 21 112333333322 1112 233468999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHHHhcC----CCEEEEEecChhHHHhcc
Q psy4347 653 SITENNILSSLKTASR----NKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 653 ~~te~~i~~~l~~~~~----~~T~i~IaHrls~i~~~d 686 (816)
+.+...+.+.|++... ++|+|+++|++..+...|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d 183 (198)
T cd03276 146 MVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSD 183 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccccc
Confidence 9999999999988532 358999999999998886
No 395
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.83 E-value=3.5e-20 Score=185.77 Aligned_cols=210 Identities=24% Similarity=0.364 Sum_probs=164.6
Q ss_pred EEEeeEEEeCC-CcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC----CCcceEEECCEeCCCCChHHHh
Q psy4347 483 EFRDVNFSYID-KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE----PNAGAIYIDGKNINDVDLDSLR 557 (816)
Q Consensus 483 ~~~~vsf~Y~~-~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~----p~~G~I~idG~di~~~~~~~lr 557 (816)
.++|++..+.. .+...++++||++...||+-++||+||||||-++|.|+|..+ .+.-+.++|++|+-+++++.-|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 34444444421 124578999999999999999999999999999999999875 3567788999999999998877
Q ss_pred h----ccEEEcCCCCcc---cccH----HHHHhcCC--------CCCCHHHHHHHHHHcCC--hhHHH-hCCCCcccccc
Q psy4347 558 R----HIAIVPQDPVLF---HDTI----LYNINYGD--------KSKSYEETIEAAKLADL--HNSII-KWPNHYETQVG 615 (816)
Q Consensus 558 ~----~i~~V~Q~~~LF---~~Ti----~eNi~~~~--------~~~~~~~i~~a~~~a~l--~~~I~-~LP~GydT~VG 615 (816)
+ .|++++|+|.-. +.+| -+||-... -.....+.++.+..+|+ |+.|+ +.|
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-------- 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-------- 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc--------
Confidence 6 577999998743 3343 45663211 01233567788888988 44554 466
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc------
Q psy4347 616 ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL------ 686 (816)
Q Consensus 616 E~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d------ 686 (816)
..|--||-|+|.||-|+..+|++||-||||.++|+.|..+|+..|.++.+ +.|+++|+|++.++.. ||
T Consensus 157 ---~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233 (330)
T ss_pred ---chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence 56888999999999999999999999999999999999999999987644 6799999999999865 55
Q ss_pred -CeEEEEcChhHHhhcCc
Q psy4347 687 -GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 687 -g~i~~~g~~~~L~~~~~ 703 (816)
|+-+|.+.-+++++...
T Consensus 234 CGQ~~ESa~~e~l~~~Ph 251 (330)
T COG4170 234 CGQTVESAPSEELVTMPH 251 (330)
T ss_pred ecccccccchhHHhcCCC
Confidence 88888888888877644
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=199.06 Aligned_cols=180 Identities=23% Similarity=0.353 Sum_probs=134.4
Q ss_pred EEeCCCcccccceeeeEEeeC-----CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEE
Q psy4347 489 FSYIDKHTKRIFSNLNFTIPA-----GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563 (816)
Q Consensus 489 f~Y~~~~~~~vL~~isl~i~~-----Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V 563 (816)
+.|++ -...+.|+.|++.+ ||+++++||||-||||++++|+|..+|++|. ..++ .|+|=
T Consensus 343 v~y~~--~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyK 406 (591)
T COG1245 343 VEYPD--LKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYK 406 (591)
T ss_pred eecch--heeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeec
Confidence 44543 23445577777665 6889999999999999999999999999998 3333 37888
Q ss_pred cCCC-CcccccHHHHHhcCCCC-CCHHH-HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q psy4347 564 PQDP-VLFHDTILYNINYGDKS-KSYEE-TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640 (816)
Q Consensus 564 ~Q~~-~LF~~Ti~eNi~~~~~~-~~~~~-i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~ 640 (816)
||-- .=|++||.+-+.-..++ ..... -.+.++-.++++. +...-.+|||||.||||||-||.++++
T Consensus 407 PQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i-----------~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 407 PQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL-----------LERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred ceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHH-----------HhcccccCCchhHHHHHHHHHhccccC
Confidence 8852 23899999877644332 11111 1233333444333 333345799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEE-EEcCh
Q psy4347 641 ILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKA-HRKTS 695 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~-~~g~~ 695 (816)
+++||||++.||.+..-.+-+.|++.. .++|.++|-|++-.+....++++ ..|.+
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GeP 533 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEP 533 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCC
Confidence 999999999999999999999999864 36899999999999887766664 45543
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.79 E-value=5.8e-19 Score=178.23 Aligned_cols=78 Identities=24% Similarity=0.309 Sum_probs=70.3
Q ss_pred HHhCCCCccccccCCCCCCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEec
Q psy4347 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL----KNTPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAH 677 (816)
Q Consensus 603 I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll----~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaH 677 (816)
+.-+|+|=.|++ ||||||||++||||+. .+|+++|+||||++||+.....+.+.|+++.+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 556788888887 9999999999999995 79999999999999999999999999988644 589999999
Q ss_pred ChhHHHhcc
Q psy4347 678 RLSTIKHLL 686 (816)
Q Consensus 678 rls~i~~~d 686 (816)
+++.+..+|
T Consensus 157 ~~~~~~~ad 165 (178)
T cd03239 157 KKEMFENAD 165 (178)
T ss_pred CHHHHhhCC
Confidence 999998776
No 398
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.78 E-value=1e-18 Score=189.78 Aligned_cols=195 Identities=24% Similarity=0.429 Sum_probs=151.2
Q ss_pred CccEEEEeeEEEeCCC-----------------------cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC--
Q psy4347 479 NASIEFRDVNFSYIDK-----------------------HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF-- 533 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~-----------------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl-- 533 (816)
.+.+.|++++..|.+. ...++|+||||+|+||+.++|||+|||||||++++|+|.
T Consensus 355 ~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~ 434 (593)
T COG2401 355 EGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434 (593)
T ss_pred CCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh
Confidence 4567888887766321 123689999999999999999999999999999999986
Q ss_pred ------CCCCcceEEECCEeCCCCChHHHhhccEEEcC--CCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHh
Q psy4347 534 ------FEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ--DPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605 (816)
Q Consensus 534 ------~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q--~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~ 605 (816)
|.|++|.|.+--..+. +++|- ||.+=.-||.|.+.- ..-+.....+.+..+|+.|-+.-
T Consensus 435 ~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep~f~~~tilehl~s--~tGD~~~AveILnraGlsDAvly 501 (593)
T COG2401 435 GRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEPEFGEVTILEHLRS--KTGDLNAAVEILNRAGLSDAVLY 501 (593)
T ss_pred cccccccCCCCCceeccccchh-----------hccCcccccccCchhHHHHHhh--ccCchhHHHHHHHhhccchhhhh
Confidence 7899999977443221 34444 344445588888742 22233455678889999776532
Q ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHH
Q psy4347 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIK 683 (816)
Q Consensus 606 LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~ 683 (816)
-.. -..||-|||-|..||+++...|.+++.||.-|+||+.|...+...|.++. .+.|.++||||.+.+.
T Consensus 502 -----Rr~----f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~ 572 (593)
T COG2401 502 -----RRK----FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGN 572 (593)
T ss_pred -----hcc----HhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHh
Confidence 111 25799999999999999999999999999999999999999999998876 5899999999999998
Q ss_pred hcc-CeEEEEcCh
Q psy4347 684 HLL-GYKAHRKTS 695 (816)
Q Consensus 684 ~~d-g~i~~~g~~ 695 (816)
..+ ++++-.|-+
T Consensus 573 AL~PD~li~vgYg 585 (593)
T COG2401 573 ALRPDTLILVGYG 585 (593)
T ss_pred ccCCceeEEeecc
Confidence 886 666655543
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=2.6e-18 Score=178.38 Aligned_cols=169 Identities=20% Similarity=0.215 Sum_probs=109.8
Q ss_pred eeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH-hh-----ccEEEcCCCCccccc-
Q psy4347 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL-RR-----HIAIVPQDPVLFHDT- 573 (816)
Q Consensus 501 ~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l-r~-----~i~~V~Q~~~LF~~T- 573 (816)
+++.++..+| ..+|+|+||||||||+..|.-..-..... .+ +.-..+++ +. .|-..++.. ...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~---~~---r~~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKL---LG---RAKKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccc---cc---cccCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 4455555554 56899999999999999876555222110 00 11111111 11 111111110 001
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH----hccCCCEEEEeCCCC
Q psy4347 574 ILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA----ILKNTPILVFDEATS 649 (816)
Q Consensus 574 i~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA----ll~~p~iLiLDE~Ts 649 (816)
..+|+++. .+.+.+.+++.+... |.+.++|.+.+.. ..+...||||||||+++|++ ++.+|+++|+||||+
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 23444432 245677777777655 6667888776543 45668999999999887754 468999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC--C-CEEEEEecChhHHHh
Q psy4347 650 SLDSITENNILSSLKTASR--N-KTTICIAHRLSTIKH 684 (816)
Q Consensus 650 ~LD~~te~~i~~~l~~~~~--~-~T~i~IaHrls~i~~ 684 (816)
+||+.+...+.+.|.+..+ + .|+|+|||++..+..
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 9999999999999988643 3 479999999865543
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=9.5e-18 Score=180.69 Aligned_cols=68 Identities=26% Similarity=0.394 Sum_probs=62.4
Q ss_pred CCChhHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccC
Q psy4347 620 KLSGGEKQRVAIARAILK----NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLG 687 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~----~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg 687 (816)
.|||||+||+++||+++. +|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++....+|-
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~ 241 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADN 241 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCc
Confidence 599999999999997654 99999999999999999999999999998778999999999998877763
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.75 E-value=2.1e-17 Score=209.84 Aligned_cols=195 Identities=24% Similarity=0.277 Sum_probs=139.9
Q ss_pred cceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh------cC---CCCCcceEEECCEeCCCCC----------hHHHhhc
Q psy4347 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY------RF---FEPNAGAIYIDGKNINDVD----------LDSLRRH 559 (816)
Q Consensus 499 vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~------gl---~~p~~G~I~idG~di~~~~----------~~~lr~~ 559 (816)
=|+||+.+||-|..++|.|-||||||||++=.+ .+ .+.-+--|.||-.||..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 499999999999999999999999999997444 11 1333445888877775421 2445665
Q ss_pred cEEEcC------CCCcc----------------------------------------------------------cccHH
Q psy4347 560 IAIVPQ------DPVLF----------------------------------------------------------HDTIL 575 (816)
Q Consensus 560 i~~V~Q------~~~LF----------------------------------------------------------~~Ti~ 575 (816)
++-.|+ .+..| +.||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 543222 11122 12222
Q ss_pred HHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC---CCEEEEeCCCCCCC
Q psy4347 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN---TPILVFDEATSSLD 652 (816)
Q Consensus 576 eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~---p~iLiLDE~Ts~LD 652 (816)
|-+.|+.....-.+..+ .+..+--||= .+|+.-..|||||.|||-||.-|.++ +.++||||||.+|+
T Consensus 1665 ea~~~F~~~~~i~~~L~---------~L~~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh 1734 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQ---------ALIDNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLD 1734 (1809)
T ss_pred HHHHHhhccHHHHHHHH---------HHHHcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCC
Confidence 22222211111111111 2222223444 47899999999999999999999976 78999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhcc-------------CeEEEEcChhHHhhcCc
Q psy4347 653 SITENNILSSLKTA-SRNKTTICIAHRLSTIKHLL-------------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 653 ~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~d-------------g~i~~~g~~~~L~~~~~ 703 (816)
+...+.+.+.|+++ ..|.|+|+|.|++..++.|| |+|+..|+++++.+.+.
T Consensus 1735 ~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~ 1799 (1809)
T PRK00635 1735 NQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKD 1799 (1809)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCC
Confidence 99999999999886 46899999999999999999 99999999999987653
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=2e-17 Score=192.27 Aligned_cols=91 Identities=29% Similarity=0.432 Sum_probs=85.0
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhcc--
Q psy4347 613 QVGERGLKLSGGEKQRVAIARAILKNT---PILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLL-- 686 (816)
Q Consensus 613 ~VGE~G~~LSGGqrQRiaiARAll~~p---~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~d-- 686 (816)
.+|+....|||||.|||-||.-|.++. -++||||||.+|-.+-.+++++.|.++ .+|.|+|+|.|+|..|+.||
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 578999999999999999999999998 999999999999999999999999886 46899999999999999999
Q ss_pred -----------CeEEEEcChhHHhhcCc
Q psy4347 687 -----------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 687 -----------g~i~~~g~~~~L~~~~~ 703 (816)
|+|+..|+++|+.+...
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~ 922 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKA 922 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCcc
Confidence 99999999999998543
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.74 E-value=9.2e-18 Score=172.32 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=96.0
Q ss_pred ceeeeEEeeCCc-EEEEeCCCCCchhHHHHHHh--------cCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc
Q psy4347 500 FSNLNFTIPAGK-SVAIVGGSGSGKSTIIRLLY--------RFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF 570 (816)
Q Consensus 500 L~~isl~i~~Ge-~vaivG~sGsGKSTl~~ll~--------gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF 570 (816)
+-++||++.+|+ +++|+||||||||||++.|. |++-|....+ .++|+.|.-..+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence 457899999996 69999999999999999998 6555542111 134444432111
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC
Q psy4347 571 HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650 (816)
Q Consensus 571 ~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~ 650 (816)
+. +..+.++-..+|+|+||+..|++++ .+|+++++||||++
T Consensus 80 ----------g~----------------------------~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 80 ----------GD----------------------------EQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred ----------Cc----------------------------hhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 10 0011122258999999999999985 89999999999999
Q ss_pred CCHHHHHHHHH-HHHHhc-CCCEEEEEecChhHHHhcc
Q psy4347 651 LDSITENNILS-SLKTAS-RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 651 LD~~te~~i~~-~l~~~~-~~~T~i~IaHrls~i~~~d 686 (816)
+|+.+...+.. .++.+. .+.|+|++||.......+|
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d 158 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAY 158 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHh
Confidence 99999988864 466543 4789999999977666666
No 404
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.73 E-value=4.5e-18 Score=180.22 Aligned_cols=182 Identities=20% Similarity=0.291 Sum_probs=128.0
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceE--EECCEeCCCCChHHHhhcc--EEEcCCCCcccccHHHHHh
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI--YIDGKNINDVDLDSLRRHI--AIVPQDPVLFHDTILYNIN 579 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I--~idG~di~~~~~~~lr~~i--~~V~Q~~~LF~~Ti~eNi~ 579 (816)
=+.+.+||+++|+||+|+|||||++.+.+.+....+++ .+-...-+..+..++.+.+ .+|-.. ++.+-...+.
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~---~~~~~~~~~~ 86 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST---FDEPPERHVQ 86 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec---CCCCHHHHHH
Confidence 35788999999999999999999999999988764433 3332222235666666655 111110 0011111111
Q ss_pred cCCCCCCHHHHHHHHH---HcC-----ChhHHHhCCCCccccccCCCCCCChhH--------HHHHHHHHHhccCCCEEE
Q psy4347 580 YGDKSKSYEETIEAAK---LAD-----LHNSIIKWPNHYETQVGERGLKLSGGE--------KQRVAIARAILKNTPILV 643 (816)
Q Consensus 580 ~~~~~~~~~~i~~a~~---~a~-----l~~~I~~LP~GydT~VGE~G~~LSGGq--------rQRiaiARAll~~p~iLi 643 (816)
.. ..+.+.++ ..| +-|.+.++|++|++.+|+.|..+|||| +||+++||+++++++|.+
T Consensus 87 ~~------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 87 VA------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HH------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 11 11111111 222 347789999999999999999999999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH-HHHHHHHhc-CCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 644 FDEATSSLDSITENN-ILSSLKTAS-RNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 644 LDE~Ts~LD~~te~~-i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
| ||+.+|+.++.. ++ +.+++ .++|.|+++||+++..++| |.+ |++++..++
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~ 220 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPE 220 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHH
Confidence 9 999999877764 43 34443 5799999999999999987 554 777776644
No 405
>KOG0065|consensus
Probab=99.72 E-value=1.1e-17 Score=203.11 Aligned_cols=195 Identities=23% Similarity=0.352 Sum_probs=159.7
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC---cceEEECCEeCCCCChHHHhhccEEEcCCCCcc-c
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-H 571 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~---~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~ 571 (816)
...+|+|+|.-++||+.+-+.||.|||||||++.|+|-.+-. .|+|.+||+|.++... ++.++|.+|+..-| .
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccce
Confidence 357999999999999999999999999999999999977642 5699999999998776 88899999999988 5
Q ss_pred ccHHHHHhcCC----C-----CCCHHHH-----HHHHHHcCChhHHHhCCCCccccccCCC-CCCChhHHHHHHHHHHhc
Q psy4347 572 DTILYNINYGD----K-----SKSYEET-----IEAAKLADLHNSIIKWPNHYETQVGERG-LKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 572 ~Ti~eNi~~~~----~-----~~~~~~i-----~~a~~~a~l~~~I~~LP~GydT~VGE~G-~~LSGGqrQRiaiARAll 636 (816)
.||+|-+.|.. | +.+..|- ..+++.- .|....||.||.+. ...|||||.||++|-+++
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkil-------GL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL-------GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHh-------CchhhccceecccccccccCcccceeeeeeeee
Confidence 69999998751 1 1222221 1233333 35668999999754 689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChh--HHHhcc-------CeEEEEcChhHHhh
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLS--TIKHLL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls--~i~~~d-------g~i~~~g~~~~L~~ 700 (816)
.+|+++.+||+|-+||+.|.-++.+.|+++.+ +.|.++.=|..+ +..-.| |+++-.|.-++.+.
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999999999998654 677777777754 334444 99999999888764
No 406
>KOG2355|consensus
Probab=99.72 E-value=7.6e-17 Score=161.69 Aligned_cols=203 Identities=23% Similarity=0.374 Sum_probs=145.4
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC-CCh----
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND-VDL---- 553 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~-~~~---- 553 (816)
...|++.++.|.|+. ..|++-|+|+++|+|...-+||.||||||||+|+|.|=.-.-.|.|.+.|.+--. -.+
T Consensus 11 ~~aievsgl~f~y~~--~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV--SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEeccc--CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 457999999999986 5699999999999999999999999999999999999998888999999976422 111
Q ss_pred ------HHHhhccEEEcCCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 554 ------DSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 554 ------~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
.+|++..+.-- +..|- +-++ +.+.+|-...+.++-.+..+ =+|-.+.=+-..+|-|||
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sa-e~mifgV~g~dp~Rre~LI~-------------iLDIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISA-EHMIFGVGGDDPERREKLID-------------ILDIDLRWRMHKVSDGQR 153 (291)
T ss_pred ceeEecccccccccccc-cccccccccH-HHHHhhccCCChhHhhhhhh-------------heeccceEEEeeccccch
Confidence 12233333222 11111 1132 22233322222222222222 233334445578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEEecChhHHHhcc--------CeEEEEcChh
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA--SRNKTTICIAHRLSTIKHLL--------GYKAHRKTST 696 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~--~~~~T~i~IaHrls~i~~~d--------g~i~~~g~~~ 696 (816)
.|+-|+..|++.=++|+|||-|--||......+++-+++. .+++|++..||-..-+..-- |+++..-.++
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 9999999999999999999999999999999999999864 45899999999877665432 7777644444
Q ss_pred HH
Q psy4347 697 NL 698 (816)
Q Consensus 697 ~L 698 (816)
+.
T Consensus 234 ~i 235 (291)
T KOG2355|consen 234 KI 235 (291)
T ss_pred hh
Confidence 33
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.71 E-value=1.6e-17 Score=182.64 Aligned_cols=182 Identities=27% Similarity=0.348 Sum_probs=127.3
Q ss_pred eeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCE-------------eCCCCC
Q psy4347 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK-------------NINDVD 552 (816)
Q Consensus 486 ~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~-------------di~~~~ 552 (816)
++..+|+. +-..|-.+- ..++|+.++|+|+||-||||.+|+|+|-..|+=|+- ++- .+.++=
T Consensus 79 e~vHRYg~--NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGV--NGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccC--CceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHH
Confidence 56778864 222233222 256899999999999999999999999999997753 221 111110
Q ss_pred hHHHh------hccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 553 LDSLR------RHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 553 ~~~lr------~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
.+-+- .++.||---|-.+.|++.|=+.--++.-..+|+. +..++.+ .+...-.+|||||-
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devv---e~l~L~n-----------vl~r~v~~LSGGEL 219 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVV---ERLGLEN-----------VLDRDVSELSGGEL 219 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHH---HHhcchh-----------hhhhhhhhcCchHH
Confidence 00000 1223333346677788877775443322223333 3333333 33344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHhcc
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~~d 686 (816)
||+|||-|++++++++++|||||-||....-..-+.|+++.+ ++++|+|.|+|..+....
T Consensus 220 Qr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ls 280 (591)
T COG1245 220 QRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLS 280 (591)
T ss_pred HHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhh
Confidence 999999999999999999999999999999999999999877 699999999999986654
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.69 E-value=3.4e-17 Score=168.27 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=99.1
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc-cccHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTIL 575 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti~ 575 (816)
++|++|++|+. |++++|+||||||||||+|+|.+..- +..+|.++... .+++|...+| +.|+.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 46888887765 79999999999999999999987442 23477766431 3677866677 56999
Q ss_pred HHHhcCCCCCCHHHH---HHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q psy4347 576 YNINYGDKSKSYEET---IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652 (816)
Q Consensus 576 eNi~~~~~~~~~~~i---~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD 652 (816)
||+.++... ..++. .++++.++ ..+|+++|+||||+++|
T Consensus 78 d~l~~~~s~-~~~e~~~~~~iL~~~~-------------------------------------~~~p~llllDEp~~glD 119 (199)
T cd03283 78 DDLRDGISY-FYAELRRLKEIVEKAK-------------------------------------KGEPVLFLLDEIFKGTN 119 (199)
T ss_pred hccccccCh-HHHHHHHHHHHHHhcc-------------------------------------CCCCeEEEEecccCCCC
Confidence 999887532 12222 22222222 07999999999999999
Q ss_pred HHHHHHHHH-HHHHh-cCCCEEEEEecChhHHHhcc
Q psy4347 653 SITENNILS-SLKTA-SRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 653 ~~te~~i~~-~l~~~-~~~~T~i~IaHrls~i~~~d 686 (816)
+.+...+.. .++++ .++.|+|++||++..+...+
T Consensus 120 ~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~ 155 (199)
T cd03283 120 SRERQAASAAVLKFLKNKNTIGIISTHDLELADLLD 155 (199)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhh
Confidence 998876654 45554 34789999999999887764
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.69 E-value=1.3e-16 Score=158.57 Aligned_cols=129 Identities=25% Similarity=0.302 Sum_probs=95.4
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEE-EcCCCCcccccHHHHHhcCC
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI-VPQDPVLFHDTILYNINYGD 582 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~-V~Q~~~LF~~Ti~eNi~~~~ 582 (816)
++.+.+|..+.|+|||||||||+++.+.-..-..+|.+.- +.++ +.++ +++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc----------cCCCcceeeEEEE------------
Confidence 4445556799999999999999999977666555555544 1111 1121 22222111
Q ss_pred CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHH
Q psy4347 583 KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK----NTPILVFDEATSSLDSITENN 658 (816)
Q Consensus 583 ~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~----~p~iLiLDE~Ts~LD~~te~~ 658 (816)
|. +. .+||+||+||++|||+|.. +|+++|||||++++|+.....
T Consensus 72 --------------------i~-------~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 --------------------IF-------TR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred --------------------eh-------he-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 00 00 1299999999999999986 789999999999999999999
Q ss_pred HHHHHHHhc-CCCEEEEEecChhHHHhccC
Q psy4347 659 ILSSLKTAS-RNKTTICIAHRLSTIKHLLG 687 (816)
Q Consensus 659 i~~~l~~~~-~~~T~i~IaHrls~i~~~dg 687 (816)
+.+.+.+.. +++|+|++||+++....+|.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~ 149 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADK 149 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhh
Confidence 999987753 36899999999999988873
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=2.9e-16 Score=164.04 Aligned_cols=138 Identities=20% Similarity=0.124 Sum_probs=100.9
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE-EEcCCCCcccccH
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA-IVPQDPVLFHDTI 574 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~-~V~Q~~~LF~~Ti 574 (816)
...+.+|+++++++|++++|.|||||||||+++.+.- ..+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3578999999999999999999999999999999981 24455666 7777653222 1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh--ccCCCEEEEeCC---CC
Q psy4347 575 LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI--LKNTPILVFDEA---TS 649 (816)
Q Consensus 575 ~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl--l~~p~iLiLDE~---Ts 649 (816)
.+.| ....++.|.+ ...+|.|++|+..+|+++ +.+|+++||||| |+
T Consensus 73 ~~~i---------------l~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 73 VDCI---------------LARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred ccee---------------Eeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 1111 1112222211 257999999999999999 999999999999 99
Q ss_pred CCCHHHHHHHH-HHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 650 SLDSITENNIL-SSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 650 ~LD~~te~~i~-~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
++|+....... +.+.+ ..++|+|++||..+....+|
T Consensus 124 ~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 124 TYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred hHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhh
Confidence 99998776443 55543 24789999999654444455
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.66 E-value=8.3e-17 Score=148.60 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=72.3
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILY 576 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~e 576 (816)
.++|++++|++++|+.++|+||||||||||+++++ +|+|.++|.|+..++.++.++.++++||+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999987 89999999999999999999999999998 99999999
Q ss_pred HHhc
Q psy4347 577 NINY 580 (816)
Q Consensus 577 Ni~~ 580 (816)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 412
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=3.9e-16 Score=199.62 Aligned_cols=113 Identities=22% Similarity=0.258 Sum_probs=103.8
Q ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH------HHHHHHHhccCCCEE
Q psy4347 569 LFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ------RVAIARAILKNTPIL 642 (816)
Q Consensus 569 LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ------RiaiARAll~~p~iL 642 (816)
.|+||++|||.+ +|+++++ ..+++.++.++|+..+|.| ||.++.+| .||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 489999999999 8888766 6889999999999999999 99999886 89999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEEecChhHHHhcc
Q psy4347 643 VFDEATSSLDSITENNILSSLKTAS------RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 643 iLDE~Ts~LD~~te~~i~~~l~~~~------~~~T~i~IaHrls~i~~~d 686 (816)
+|||||++||+.+...+.+.|.++. .|.|+|+|||++..+...+
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHh
Confidence 9999999999999999998887652 3689999999999998875
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=2.1e-15 Score=162.01 Aligned_cols=186 Identities=17% Similarity=0.262 Sum_probs=112.8
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-----------------------------------------CCc
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----------------------------------------PNA 538 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-----------------------------------------p~~ 538 (816)
+++.++++.+| .++|+|||||||||++..|.-+.. ..+
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 44566777776 588999999999999887643321 011
Q ss_pred ceEEECCEeCCC-CChHHHhhccEEEcCCCCcccccHHHHHhcCC----C-CCCH----HHHHHHHHHcCChhHHHhCCC
Q psy4347 539 GAIYIDGKNIND-VDLDSLRRHIAIVPQDPVLFHDTILYNINYGD----K-SKSY----EETIEAAKLADLHNSIIKWPN 608 (816)
Q Consensus 539 G~I~idG~di~~-~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~----~-~~~~----~~i~~a~~~a~l~~~I~~LP~ 608 (816)
..+.+||..++. -+...+-..|.+.|++..|+.++-.+-..|-+ + .... ++..++.+.- +-+.+-|+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQR---NALLKGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH---HHHhCCCC
Confidence 145577776654 12223344566777777788554333222211 1 1111 1122222111 11111344
Q ss_pred CccccccCCC----CCCChhHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Q psy4347 609 HYETQVGERG----LKLSGGEKQRVAIARAIL---------KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICI 675 (816)
Q Consensus 609 GydT~VGE~G----~~LSGGqrQRiaiARAll---------~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~I 675 (816)
.-|..+.-++ .-+|+||+|+++|||+|+ .+|+++||||||++||+.....+.+.+++.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 4343333222 348999999999999984 7999999999999999999999999998752 45666
Q ss_pred ecChhHHHhc--c-CeEEEE
Q psy4347 676 AHRLSTIKHL--L-GYKAHR 692 (816)
Q Consensus 676 aHrls~i~~~--d-g~i~~~ 692 (816)
+|....+... + .+|++.
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l 264 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRV 264 (270)
T ss_pred eCCchhccchhccCccEEEE
Confidence 6665555543 2 455554
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.60 E-value=2e-15 Score=155.13 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=87.5
Q ss_pred eeEEeeCCcEEEEeCCCCCchhHHHHHHhc-CCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcC
Q psy4347 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYR-FFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG 581 (816)
Q Consensus 503 isl~i~~Ge~vaivG~sGsGKSTl~~ll~g-l~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~ 581 (816)
.++++.+|++++|+|||||||||++++|.+ .+.++.|...- ..+..+++..|....|. ..++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~---- 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDS---- 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccc----
Confidence 355566899999999999999999999994 32222221100 00122333322211111 0011
Q ss_pred CCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4347 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661 (816)
Q Consensus 582 ~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~ 661 (816)
+.++-+.++++++| +..+-+++.+|+++||||||+++|+.....+..
T Consensus 85 --------------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 85 --------------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred --------------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 11122456666665 666678889999999999999999988877655
Q ss_pred H-HHHhc-CCCEEEEEecChhHHHhcc
Q psy4347 662 S-LKTAS-RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 662 ~-l~~~~-~~~T~i~IaHrls~i~~~d 686 (816)
. ++.+. .+.++|++||+...+..+|
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPE 158 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhh
Confidence 4 44432 4789999999999999887
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=2.5e-14 Score=147.62 Aligned_cols=140 Identities=15% Similarity=0.121 Sum_probs=99.7
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEE-EcCCCCcc-ccc
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI-VPQDPVLF-HDT 573 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~-V~Q~~~LF-~~T 573 (816)
+.++.+|++|++++|+.++|+|||||||||+++.+.++. +..++|+ || ..+ .-+
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vp---a~~~~l~ 70 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVP---AEYATLP 70 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcc---hhhcCcc
Confidence 457899999999999999999999999999999998873 3334443 22 222 225
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q psy4347 574 ILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653 (816)
Q Consensus 574 i~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~ 653 (816)
+.|||...-. .+..+.++.+.+|+|++|+. .+-+++.+|+++|||||++++|+
T Consensus 71 ~~d~I~~~~~--------------------------~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 71 IFNRLLSRLS--------------------------NDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred ChhheeEecC--------------------------CccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCH
Confidence 5555532110 11112334478999999764 44557889999999999999999
Q ss_pred HHHHHHHHH-HHHh-cCCCEEEEEecChhHHHhcc
Q psy4347 654 ITENNILSS-LKTA-SRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 654 ~te~~i~~~-l~~~-~~~~T~i~IaHrls~i~~~d 686 (816)
.....+... ++.+ ..++++|++||..+.+..++
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 775554433 3333 23789999999999887765
No 416
>KOG0066|consensus
Probab=99.49 E-value=2.6e-14 Score=156.03 Aligned_cols=199 Identities=22% Similarity=0.349 Sum_probs=130.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhc--CCCCCcceEEECCEeCCCCChHHH--
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR--FFEPNAGAIYIDGKNINDVDLDSL-- 556 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g--l~~p~~G~I~idG~di~~~~~~~l-- 556 (816)
+|.++|.+.+-. ++..+.|-||.|-.|..+++|||+|-|||||++-|.- |--|..=.|+++.+.+-.-+...+
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 477787766652 4678999999999999999999999999999998864 334555566666665433221111
Q ss_pred -----hhccEEEcCCCCcccccHHHHHhcCCCCCC--HHHHHHHHHHcCChh-------HHHhCCCCccccccCCC-CCC
Q psy4347 557 -----RRHIAIVPQDPVLFHDTILYNINYGDKSKS--YEETIEAAKLADLHN-------SIIKWPNHYETQVGERG-LKL 621 (816)
Q Consensus 557 -----r~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~--~~~i~~a~~~a~l~~-------~I~~LP~GydT~VGE~G-~~L 621 (816)
.++..++-.+.-| ..-|--|+..+. .+++.+-++..|++. .+.. -|++-..-++. ..+
T Consensus 341 vl~aD~kRl~lLeee~~L-----~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKL-----MSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTTKF 413 (807)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCcccc
Confidence 0111111111111 111111211110 012222222222211 1111 26666666665 589
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEE
Q psy4347 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 622 SGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
|||-|-||++||||+-.|-+|.|||||.+||-...--+-+.|..+ .+|.+||+|+-+.+.+.|-.|+-
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIH 481 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhh
Confidence 999999999999999999999999999999998887777778776 57999999999999988866654
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.48 E-value=2.1e-13 Score=146.34 Aligned_cols=122 Identities=21% Similarity=0.300 Sum_probs=90.7
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHH
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEE 589 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~-~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~ 589 (816)
+.++|+||+|||||||++.|+|++.|++|+|.++|.++...+ ..++...++++||...--..++.||. +. .+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~k---~~ 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----PK---AE 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----hH---HH
Confidence 689999999999999999999999999999999999998765 56778888999996532233555542 10 00
Q ss_pred HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q psy4347 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN 669 (816)
Q Consensus 590 i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~ 669 (816)
| ...++|+ .+|+++|+|||++. ..+...++.+..|
T Consensus 185 ----------------------------------~---~~~~i~~--~~P~villDE~~~~------e~~~~l~~~~~~G 219 (270)
T TIGR02858 185 ----------------------------------G---MMMLIRS--MSPDVIVVDEIGRE------EDVEALLEALHAG 219 (270)
T ss_pred ----------------------------------H---HHHHHHh--CCCCEEEEeCCCcH------HHHHHHHHHHhCC
Confidence 0 1455555 49999999999742 3344444545568
Q ss_pred CEEEEEecChhHHHh
Q psy4347 670 KTTICIAHRLSTIKH 684 (816)
Q Consensus 670 ~T~i~IaHrls~i~~ 684 (816)
.|+|+++|+.+....
T Consensus 220 ~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 220 VSIIATAHGRDVEDL 234 (270)
T ss_pred CEEEEEechhHHHHH
Confidence 999999998665333
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.48 E-value=1.2e-13 Score=143.77 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=88.6
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc-cccHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTIL 575 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti~ 575 (816)
..+.+|++|++++ ++++|+|||||||||+++.+.+..-. |+ .|.++ + .-+..++++.| +| +.++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---P--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---c--cccceecceee---EeccCCch
Confidence 4688999999987 99999999999999999999864321 11 12211 1 11345666654 34 33555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh--ccCCCEEEEeCC---CCC
Q psy4347 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI--LKNTPILVFDEA---TSS 650 (816)
Q Consensus 576 eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl--l~~p~iLiLDE~---Ts~ 650 (816)
||+..|.. -=...+..|++++ ..+|+++||||| |++
T Consensus 84 ~~ls~g~s---------------------------------------~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 84 DDLAGGRS---------------------------------------TFMVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred hhhccCcc---------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 55554421 1111223344444 469999999999 999
Q ss_pred CCHHHH-HHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 651 LDSITE-NNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 651 LD~~te-~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
+|.... ..+.+.+.+. .++|+|++||+.+....+|
T Consensus 125 lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~ 160 (216)
T cd03284 125 YDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEG 160 (216)
T ss_pred HHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhh
Confidence 998653 4455555442 3789999999976655554
No 419
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.47 E-value=9.8e-14 Score=170.11 Aligned_cols=88 Identities=25% Similarity=0.356 Sum_probs=78.3
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc----
Q psy4347 614 VGERGLKLSGGEKQRVAIARAILKNT--PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL---- 686 (816)
Q Consensus 614 VGE~G~~LSGGqrQRiaiARAll~~p--~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d---- 686 (816)
....-.+|||||+|||+|||||..+| ++|||||||++||+.....+.+.|+++. +|.|+|+|+|++..+..||
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 45556789999999999999999997 9999999999999999999999999875 4899999999999998877
Q ss_pred ---------CeEEEEcChhHHhhc
Q psy4347 687 ---------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 687 ---------g~i~~~g~~~~L~~~ 701 (816)
|+|+..|+.+++.+.
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhcC
Confidence 688888888887553
No 420
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=1.5e-13 Score=168.31 Aligned_cols=87 Identities=25% Similarity=0.347 Sum_probs=78.0
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc----
Q psy4347 614 VGERGLKLSGGEKQRVAIARAILKNT--PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL---- 686 (816)
Q Consensus 614 VGE~G~~LSGGqrQRiaiARAll~~p--~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d---- 686 (816)
++....+|||||+|||+|||||..+| ++|||||||++||+.+...+.+.|+++. +|.|+|+|+|+++.+..||
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 45667899999999999999999986 8999999999999999999999999874 4799999999999999877
Q ss_pred ---------CeEEEEcChhHHhh
Q psy4347 687 ---------GYKAHRKTSTNLVR 700 (816)
Q Consensus 687 ---------g~i~~~g~~~~L~~ 700 (816)
|+|+..|+.+++..
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhc
Confidence 77888888888754
No 421
>KOG0063|consensus
Probab=99.43 E-value=4.7e-13 Score=146.56 Aligned_cols=178 Identities=23% Similarity=0.344 Sum_probs=129.5
Q ss_pred EEeCCCcccccceeeeEEeeCCc-----EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEE
Q psy4347 489 FSYIDKHTKRIFSNLNFTIPAGK-----SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563 (816)
Q Consensus 489 f~Y~~~~~~~vL~~isl~i~~Ge-----~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V 563 (816)
+.||. .+.-+-++.|.|+.|+ ++...|++|.||||++++++|..+|++| .++..++ ++|=
T Consensus 343 y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~------~e~p~ln-------VSyk 407 (592)
T KOG0063|consen 343 YSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG------GEIPVLN-------VSYK 407 (592)
T ss_pred eccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc------Ccccccc-------eecc
Confidence 56776 5667889999999995 6889999999999999999999999976 2333333 6777
Q ss_pred cCCC-CcccccHHHHHh------cCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 564 PQDP-VLFHDTILYNIN------YGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 564 ~Q~~-~LF~~Ti~eNi~------~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
||.. .=|.+|+|+-+- |-+|.. ..++.+-+... -.++..-.+||||+.||+|||-+|-
T Consensus 408 pqkispK~~~tvR~ll~~kIr~ay~~pqF-~~dvmkpL~ie--------------~i~dqevq~lSggelQRval~KOGG 472 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRDAYMHPQF-VNDVMKPLQIE--------------NIIDQEVQGLSGGELQRVALALCLG 472 (592)
T ss_pred ccccCccccchHHHHHHHHhHhhhcCHHH-HHhhhhhhhHH--------------HHHhHHhhcCCchhhHHHHHHHhcC
Confidence 8863 256778776542 111110 12233332222 2233444789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEEecChhHHHhc-cCeEEEEcChh
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKT--ASRNKTTICIAHRLSTIKHL-LGYKAHRKTST 696 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~--~~~~~T~i~IaHrls~i~~~-dg~i~~~g~~~ 696 (816)
+.+++.+.|||.+-||.+.....-..+++ +..++|-.+|.|++-..... |--|+..|.+.
T Consensus 473 KpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps 535 (592)
T KOG0063|consen 473 KPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPS 535 (592)
T ss_pred CCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcc
Confidence 99999999999999999887766666766 34578999999998766544 44445667655
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.42 E-value=3.1e-13 Score=140.32 Aligned_cols=164 Identities=24% Similarity=0.324 Sum_probs=98.1
Q ss_pred eeeeEEeeCCcEEEEeCCCCCchhHHHHHH-hcCCC-CC-cceEEECCEeCCCC------ChHHHhhccEEEcCCCCcc-
Q psy4347 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLL-YRFFE-PN-AGAIYIDGKNINDV------DLDSLRRHIAIVPQDPVLF- 570 (816)
Q Consensus 501 ~~isl~i~~Ge~vaivG~sGsGKSTl~~ll-~gl~~-p~-~G~I~idG~di~~~------~~~~lr~~i~~V~Q~~~LF- 570 (816)
+...+.+.+ ..++|+|||||||||++..| .-|.. |. +.+ +....++ ........|...++++.-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----ccccccccccccccccccccccccccccccccc
Confidence 345566654 58999999999999999998 34432 11 111 1111111 1112223344443332111
Q ss_pred ---cc--cHHH--------HHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH----
Q psy4347 571 ---HD--TILY--------NINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR---- 633 (816)
Q Consensus 571 ---~~--Ti~e--------Ni~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR---- 633 (816)
.. .|.. .........+..++.+.+....++.. .||||||-+++||=
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~ 153 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLAL 153 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccc
Confidence 00 0100 01111222345666666655554332 89999999999984
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
.-+.++|++||||+.++||......+.+.|++..+++-+|++||+......+|
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp HTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33578899999999999999999999999999988889999999999999998
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.36 E-value=8.5e-12 Score=139.61 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=56.7
Q ss_pred CCCChhHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh
Q psy4347 619 LKLSGGEKQRVAIARAIL---------KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll---------~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~ 684 (816)
..+|+||+|+++||++|. .+|+||+||||+|.||+.....+.+.+.+. +..+++.+|.+..+..
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~ 344 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLAD 344 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhh
Confidence 578999999999999885 899999999999999999999999988764 4689999999876654
No 424
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.36 E-value=1.2e-12 Score=135.38 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q psy4347 625 EKQRVAIARAILKNTPILVFDEAT-----SSLDSITENNILSSLKTAS 667 (816)
Q Consensus 625 qrQRiaiARAll~~p~iLiLDE~T-----s~LD~~te~~i~~~l~~~~ 667 (816)
|+|++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999998864
No 425
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.34 E-value=1.2e-12 Score=154.31 Aligned_cols=100 Identities=19% Similarity=0.304 Sum_probs=84.1
Q ss_pred HHHHHHHHcCChhHHHhCCCCccccccCCC------CCCChhHHHHHHHHHHhc----------cCCCEEEEeCCC-CCC
Q psy4347 589 ETIEAAKLADLHNSIIKWPNHYETQVGERG------LKLSGGEKQRVAIARAIL----------KNTPILVFDEAT-SSL 651 (816)
Q Consensus 589 ~i~~a~~~a~l~~~I~~LP~GydT~VGE~G------~~LSGGqrQRiaiARAll----------~~p~iLiLDE~T-s~L 651 (816)
.+.+.++..+. ++...+|+++++.+++.| .+||||||||++|||||+ .+|++||||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34444544443 555578999999999988 789999999999999887 599999999998 789
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEE
Q psy4347 652 DSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 652 D~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
|+.+...+.+.|+++ ++.|+|+|||+......+|-.++
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~ 548 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLK 548 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEE
Confidence 999999999999998 78999999999988887774443
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.34 E-value=5.8e-12 Score=130.96 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=92.9
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhc--CCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCccc--cc
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR--FFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH--DT 573 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g--l~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~--~T 573 (816)
.|-+|+++.=..+..++|+||||+||||++|.+.. .. ++.|...... ...++|..|...-+. +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 45556665422237899999999999999999983 33 6667654432 123677777543331 23
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q psy4347 574 ILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653 (816)
Q Consensus 574 i~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~ 653 (816)
+.+++. .| .-+-||+++|++++.+|+++|||||++++|+
T Consensus 85 i~~~~S---------------------~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 85 VSSGQS---------------------AF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred hhhccc---------------------hH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 333221 11 2355999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHhcC----CCEEEEEecChhHHHhc
Q psy4347 654 ITENNI-LSSLKTASR----NKTTICIAHRLSTIKHL 685 (816)
Q Consensus 654 ~te~~i-~~~l~~~~~----~~T~i~IaHrls~i~~~ 685 (816)
.....+ .+.++.+.+ +.++|++||.++.+...
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 765444 445655432 24899999999998776
No 427
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.33 E-value=1.7e-11 Score=148.72 Aligned_cols=151 Identities=16% Similarity=0.199 Sum_probs=100.5
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCC-cEEEEeCCCCCchhHHHHHHhcC-CCCCcceEEECCEeCCCCChHHHh
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAG-KSVAIVGGSGSGKSTIIRLLYRF-FEPNAGAIYIDGKNINDVDLDSLR 557 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTl~~ll~gl-~~p~~G~I~idG~di~~~~~~~lr 557 (816)
+.|.++++..-+-. ..-.-.+|+++.+| +.++|+||||+||||++|.+.+. +-++.|
T Consensus 294 ~~i~l~~~rhPll~---~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------ 352 (771)
T TIGR01069 294 GKIILENARHPLLK---EPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------ 352 (771)
T ss_pred CCEEEccccCceec---CCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC------------------
Confidence 35777776542211 00011378888888 89999999999999999999987 333333
Q ss_pred hccEEEcCCCC-cccccHHHHHhcCCCCCCH-HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 558 RHIAIVPQDPV-LFHDTILYNINYGDKSKSY-EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 558 ~~i~~V~Q~~~-LF~~Ti~eNi~~~~~~~~~-~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
.+||.... .+ .+.+++. .. ..+ +.+ .++-+++|+|++|+..|++++
T Consensus 353 ---~~Vpa~~~~~~--~~~d~i~-~~--i~~~~si------------------------~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 353 ---IPIPANEHSEI--PYFEEIF-AD--IGDEQSI------------------------EQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred ---CCccCCccccc--cchhhee-ee--cChHhHH------------------------hhhhhHHHHHHHHHHHHHHhc
Confidence 14444331 11 1122221 00 111 111 122367999999999999987
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHh-cCCCEEEEEecChhHHHh
Q psy4347 636 LKNTPILVFDEATSSLDSITENNIL-SSLKTA-SRNKTTICIAHRLSTIKH 684 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~-~~l~~~-~~~~T~i~IaHrls~i~~ 684 (816)
.+|+++|||||++++|+..-..+. ..++.+ ..++++|++||..+....
T Consensus 401 -~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 401 -TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred -CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 789999999999999999998885 445554 347899999999876443
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.25 E-value=9.3e-12 Score=126.47 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=51.2
Q ss_pred CCCCCChhHHHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHH-HHHhc--CCCEEEEEecChhHHHhcc
Q psy4347 617 RGLKLSGGEKQRVAIARAILK--NTPILVFDEATSSLDSITENNILSS-LKTAS--RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 617 ~G~~LSGGqrQRiaiARAll~--~p~iLiLDE~Ts~LD~~te~~i~~~-l~~~~--~~~T~i~IaHrls~i~~~d 686 (816)
+-+.+|+|++| +++++.. +|+++|+|||++++|+.....+... ++.+. .++++|++||.++..+.+|
T Consensus 58 ~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 58 GLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD 129 (185)
T ss_pred cccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence 33678888887 4455444 9999999999999999977776544 45543 3789999999998666665
No 429
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.20 E-value=4e-12 Score=151.95 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=113.8
Q ss_pred HHHHHHHhHHHHHHchHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHH
Q psy4347 313 KAENEAGNKAIDSLINYETVKYFNNEKFEADRY-----EGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATL 387 (816)
Q Consensus 313 ~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~-----~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 387 (816)
...+..++.+.|.+.++.+||..+.|......| .+...+..+...+. .......
T Consensus 37 ~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~---------------------~~~~~~~ 95 (644)
T PRK10733 37 FLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKV---------------------VGEPPEE 95 (644)
T ss_pred HHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeE---------------------EecCccc
Confidence 334556778899999999999999988776666 45555555544443 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q psy4347 388 NFGQSAIFSTAMTLSMIFAAREIAHGNLTVG---DLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTI 464 (816)
Q Consensus 388 ~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG---~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~ 464 (816)
......+..+...+++++|+++++.|.|+.| .+++|..+...+..| ..+...+.++.....+.+|+.++++...+.
T Consensus 96 ~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~ 174 (644)
T PRK10733 96 PSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREP 174 (644)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCH
Confidence 1122233445567788899999999999999 889998888888888 667777778887778888888776542210
Q ss_pred cccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 465 KNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 465 ~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
. ..+++...+++| +.|+||+||||||+++.+++-.
T Consensus 175 --------~-------------------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 175 --------S-------------------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred --------H-------------------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHc
Confidence 0 001112245666 9999999999999999998855
No 430
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.18 E-value=4.7e-11 Score=124.90 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=86.0
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhc-CCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc-cccH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR-FFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTI 574 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g-l~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti 574 (816)
..+.+|++|++.+|++++|+||||+||||+++.+.+ .+.++.|.....- .. .+++..| +| ....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~----------~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA----------TLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce----------EEeccce---EEEEecC
Confidence 578999999999999999999999999999999999 7788888764432 11 2333322 22 1111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q psy4347 575 LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654 (816)
Q Consensus 575 ~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~ 654 (816)
.|++.-+... =..|+ +|++-+=.-..+|+++|||||.++.|+.
T Consensus 84 ~d~~~~~~St-F~~e~------------------------------------~~~~~il~~~~~~sLvllDE~~~gT~~~ 126 (222)
T cd03287 84 SDSIQHGMST-FMVEL------------------------------------SETSHILSNCTSRSLVILDELGRGTSTH 126 (222)
T ss_pred ccccccccch-HHHHH------------------------------------HHHHHHHHhCCCCeEEEEccCCCCCChh
Confidence 2222111110 01122 2222211223579999999996666654
Q ss_pred HHHH----HHHHHHHhcCCCEEEEEecChhHHHhc
Q psy4347 655 TENN----ILSSLKTASRNKTTICIAHRLSTIKHL 685 (816)
Q Consensus 655 te~~----i~~~l~~~~~~~T~i~IaHrls~i~~~ 685 (816)
.... +.+.+.+. .++|+|++||+.+.....
T Consensus 127 d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 127 DGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 4444 34444332 478999999999876655
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.10 E-value=2.6e-10 Score=134.09 Aligned_cols=73 Identities=23% Similarity=0.308 Sum_probs=66.6
Q ss_pred CCCChhHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEE
Q psy4347 619 LKLSGGEKQRVAIARAILK----NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~----~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
..|||||+|||+|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||++..+..||-++..
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence 4689999999999999996 689999999999999999999999999987789999999999999888855544
No 432
>KOG0063|consensus
Probab=99.09 E-value=7.9e-11 Score=129.41 Aligned_cols=162 Identities=27% Similarity=0.373 Sum_probs=113.6
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEe------------CCCCCh----HHHhh--ccEEEcCCCCc
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN------------INDVDL----DSLRR--HIAIVPQDPVL 569 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~d------------i~~~~~----~~lr~--~i~~V~Q~~~L 569 (816)
+||+..++||.+|-||||-++.++|-.+|.-|.- -++-| +..+-. +.++. ...||-|-|-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 4799999999999999999999999999987752 11111 111100 11111 12233333444
Q ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q psy4347 570 FHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649 (816)
Q Consensus 570 F~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts 649 (816)
-.+++.+++.--+...+.+++.+..++-++++ ..-..||||+-||.|||-+-+.++++.++|||.|
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~--------------re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLNNLLD--------------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHhhHHH--------------hhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 45667776653333234445554444444432 1225799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHh
Q psy4347 650 SLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKH 684 (816)
Q Consensus 650 ~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~ 684 (816)
-||......-...|+.+ ..++=+|+|.|+++.+..
T Consensus 243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred cchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHh
Confidence 99999988888888875 457899999999998754
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.09 E-value=1.2e-09 Score=124.69 Aligned_cols=171 Identities=18% Similarity=0.239 Sum_probs=112.9
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCE---eCCC-----CChHHHhhccEEEcCCC
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK---NIND-----VDLDSLRRHIAIVPQDP 567 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~---di~~-----~~~~~lr~~i~~V~Q~~ 567 (816)
+..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|+ ++.+ ++...+++.|.+|.+-.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45789999 999999999999999999999999999999999999999554 4443 34556788888886521
Q ss_pred CcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCC-hhHHHH-HHHHHHhccCCCEEEEe
Q psy4347 568 VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLS-GGEKQR-VAIARAILKNTPILVFD 645 (816)
Q Consensus 568 ~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LS-GGqrQR-iaiARAll~~p~iLiLD 645 (816)
. ...+++..+.-..-+.|+... +|+|-.+==. +|+ --|-|| |+++ +.+||
T Consensus 224 ~----------------~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~D--sltr~A~A~rEisl~---~ge~P----- 275 (438)
T PRK07721 224 Q----------------PALMRIKGAYTATAIAEYFRD--QGLNVMLMMD--SVTRVAMAQREIGLA---VGEPP----- 275 (438)
T ss_pred C----------------CHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChHHHHHHHHHHHHh---cCCCC-----
Confidence 0 011122111111122334432 3555444321 111 011111 1211 23343
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc---CCC-----EEEEEecChhHHHhcc-------CeEEEEcChhH
Q psy4347 646 EATSSLDSITENNILSSLKTAS---RNK-----TTICIAHRLSTIKHLL-------GYKAHRKTSTN 697 (816)
Q Consensus 646 E~Ts~LD~~te~~i~~~l~~~~---~~~-----T~i~IaHrls~i~~~d-------g~i~~~g~~~~ 697 (816)
.|+++|+.....+.+.++++. +|. |+++.+|+++. ..|| |+|+..++-.+
T Consensus 276 -~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 -TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 589999999999999998875 465 99999999985 4454 89988776443
No 434
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.09 E-value=2.3e-10 Score=135.28 Aligned_cols=70 Identities=26% Similarity=0.366 Sum_probs=64.3
Q ss_pred CCCChhHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCe
Q psy4347 619 LKLSGGEKQRVAIARAILKN----TPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGY 688 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~~----p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~ 688 (816)
..|||||+||++|||+++.. |++|||||||++||+.+...+.+.|+++.+++|+|+|||++..+..||-.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~ 512 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAH 512 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeE
Confidence 57899999999999999985 69999999999999999999999999988899999999999999877633
No 435
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.07 E-value=8.3e-11 Score=133.14 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=57.3
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc-eEEECCEeCCCCChHHHhhccEEEcCCC
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG-AIYIDGKNINDVDLDSLRRHIAIVPQDP 567 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G-~I~idG~di~~~~~~~lr~~i~~V~Q~~ 567 (816)
.++|++|||+|++||+++|+||||||||||++ .++..|++| +|.+||.++...+..++..-= +|+|+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 36899999999999999999999999999999 788889888 799999999887654432221 888863
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.04 E-value=5.6e-10 Score=135.88 Aligned_cols=136 Identities=17% Similarity=0.210 Sum_probs=90.7
Q ss_pred cceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE-EEcCCCCcccccHHHH
Q psy4347 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA-IVPQDPVLFHDTILYN 577 (816)
Q Consensus 499 vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~-~V~Q~~~LF~~Ti~eN 577 (816)
|=+|+++. ..+.++.|.|||++||||++|.+.-. .+-.++| +||-+.. ..-++.++
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~---------------------~~maq~G~~vpa~~~-~~i~~~~~ 373 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLA---------------------ALMAKSGLPIPANEP-SEIPVFKE 373 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHH---------------------HHHHHhCCCcccCCC-ccccccce
Confidence 33444443 34567999999999999999998522 1222333 4544310 01122233
Q ss_pred Hh--cCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q psy4347 578 IN--YGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655 (816)
Q Consensus 578 i~--~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~t 655 (816)
|. +|++ + .+..+-+.+|+|++|++.|+|++ .+|+++|||||++++|+..
T Consensus 374 i~~~ig~~-----------------~-----------si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~e 424 (782)
T PRK00409 374 IFADIGDE-----------------Q-----------SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDE 424 (782)
T ss_pred EEEecCCc-----------------c-----------chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHH
Confidence 31 1111 1 11123368999999999999999 8999999999999999998
Q ss_pred HHHHHHH-HHHh-cCCCEEEEEecChhHHHhcc
Q psy4347 656 ENNILSS-LKTA-SRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 656 e~~i~~~-l~~~-~~~~T~i~IaHrls~i~~~d 686 (816)
...+..+ ++.+ ..++++|++||..+....++
T Consensus 425 g~ala~aile~l~~~~~~vIitTH~~el~~~~~ 457 (782)
T PRK00409 425 GAALAISILEYLRKRGAKIIATTHYKELKALMY 457 (782)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECChHHHHHHHh
Confidence 8887654 4443 34789999999988776654
No 437
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.01 E-value=1e-09 Score=122.52 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccce-----------eeeEEeeCCcEEE
Q psy4347 446 QAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFS-----------NLNFTIPAGKSVA 514 (816)
Q Consensus 446 ~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~-----------~isl~i~~Ge~va 514 (816)
++..+.+|++++++.++..... + ....+.|+|+||+|.||+ ++.+|+ |+++.|.+||+++
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~~----~---e~~~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~ 172 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGDD----P---EKAKNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGL 172 (415)
T ss_pred eccccHhHHHHHhCCCccCCCC----c---cccCCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEE
Confidence 3456789999999987653211 1 123568999999999987 568897 9999999999999
Q ss_pred EeCCCCCchhHHHHHHhcCCCCC
Q psy4347 515 IVGGSGSGKSTIIRLLYRFFEPN 537 (816)
Q Consensus 515 ivG~sGsGKSTl~~ll~gl~~p~ 537 (816)
||||+|||||||+++|.+.+...
T Consensus 173 IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred EECCCCCChhHHHHHHHHhhccc
Confidence 99999999999999999998654
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.01 E-value=1.6e-09 Score=118.82 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=90.8
Q ss_pred eeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC
Q psy4347 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD 582 (816)
Q Consensus 503 isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~ 582 (816)
+++.+++|+.++|+||+||||||+++.|+++++|+.|.|.|+ |..++.... +..+.++.+... + +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-------~----~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-------Q----GL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-------C----Cc
Confidence 567888999999999999999999999999999999988885 444544332 233333222100 0 00
Q ss_pred CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4347 583 KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662 (816)
Q Consensus 583 ~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~ 662 (816)
...+ ..-.++++|-.+|+++++|||.+ .++.+.
T Consensus 203 ~~~~----------------------------------------~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~ 235 (308)
T TIGR02788 203 AKVT----------------------------------------PKDLLQSCLRMRPDRIILGELRG-------DEAFDF 235 (308)
T ss_pred CccC----------------------------------------HHHHHHHHhcCCCCeEEEeccCC-------HHHHHH
Confidence 1111 11245667888999999999996 234455
Q ss_pred HHHhcCCC-EEEEEecChhHHHhcc-------CeEEEEcChhHHh
Q psy4347 663 LKTASRNK-TTICIAHRLSTIKHLL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 663 l~~~~~~~-T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~ 699 (816)
++....|. +++...|..+.....+ |++...|..++.+
T Consensus 236 l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 236 IRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 55544454 5699999998666554 6666666555554
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.98 E-value=2.4e-09 Score=112.70 Aligned_cols=148 Identities=19% Similarity=0.318 Sum_probs=87.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHH-HHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTI-IRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl-~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
.|.++++...++. -+++|+.+.|+|++||||||+ .+++.++.++....+++... .+++++.++
T Consensus 7 ~~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~~~~~ 70 (230)
T PRK08533 7 ELSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTEFIKQ 70 (230)
T ss_pred EEEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHH
Confidence 3667777666643 279999999999999999999 69999988765555555421 122222222
Q ss_pred cEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc---
Q psy4347 560 IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL--- 636 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll--- 636 (816)
+. .+|- +.++. ...-.+ .++.-. ..+|+++.++-.+++.+-
T Consensus 71 ~~-----------------~~g~---~~~~~---~~~~~l-~~~~~~------------~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 71 MM-----------------SLGY---DINKK---LISGKL-LYIPVY------------PLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred HH-----------------HhCC---chHHH---hhcCcE-EEEEec------------ccccChHHHHHHHHHHHHHHH
Confidence 11 1111 00110 000000 000000 135666655555554433
Q ss_pred -cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhcC-CCEEEEEecChhH
Q psy4347 637 -KNTPILVFDEATSSL----DSITENNILSSLKTASR-NKTTICIAHRLST 681 (816)
Q Consensus 637 -~~p~iLiLDE~Ts~L----D~~te~~i~~~l~~~~~-~~T~i~IaHrls~ 681 (816)
.+|+++++||||+.+ |+...+.+.+.++.+.+ ++|+ ++||+...
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~ 164 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKE 164 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccc
Confidence 369999999999999 77777888888877643 6654 55666554
No 440
>PRK13695 putative NTPase; Provisional
Probab=98.94 E-value=2.2e-09 Score=107.72 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=53.9
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------Ce
Q psy4347 618 GLKLSGGEKQRVAIARAILKNTPILVFDE--ATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GY 688 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~~p~iLiLDE--~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~ 688 (816)
...+||+++-++.+++..+++|+++++|| |+..+|+...+.+.+.+ ..++++|+++|+-..-..+| |+
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGR 152 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcE
Confidence 34699999999999999999999999999 55556655555554444 34789999999854444444 77
Q ss_pred EEEE
Q psy4347 689 KAHR 692 (816)
Q Consensus 689 i~~~ 692 (816)
|++.
T Consensus 153 i~~~ 156 (174)
T PRK13695 153 VYEL 156 (174)
T ss_pred EEEE
Confidence 7665
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.94 E-value=5.2e-09 Score=118.75 Aligned_cols=164 Identities=18% Similarity=0.170 Sum_probs=115.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.++-++++..|.. +..+++++ |++.+||+++|+|++|+|||||+++|+|..+|+.|.|.+.|+.-++
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~e---------- 196 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGRE---------- 196 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCccc----------
Confidence 4677778877864 46788885 9999999999999999999999999999999999988777754322
Q ss_pred EEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc----
Q psy4347 561 AIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL---- 636 (816)
Q Consensus 561 ~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll---- 636 (816)
++|.+.. .++..++. .|.+=-.-.+-|.|+|+|++.+.+.+
T Consensus 197 -------------v~e~~~~------------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 197 -------------VKDFIRK------------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred -------------HHHHHHH------------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 2222210 00001110 01111223678999999999998887
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc----CeEEEEcC
Q psy4347 637 ---KNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL----GYKAHRKT 694 (816)
Q Consensus 637 ---~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d----g~i~~~g~ 694 (816)
.++-+|++||+|...|+. ++|-..+.+.- .|.|..+-+|-.+....+. |.|...++
T Consensus 242 r~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGKTQKGSITGIYT 305 (432)
T ss_pred HHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhccCCCcceEEEEE
Confidence 789999999999999997 55555665543 4678888888444455543 66654443
No 442
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.93 E-value=3.5e-09 Score=124.56 Aligned_cols=102 Identities=25% Similarity=0.299 Sum_probs=85.6
Q ss_pred hHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEec
Q psy4347 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN--TPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAH 677 (816)
Q Consensus 601 ~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~--p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaH 677 (816)
.|+.+.--||=|. .....+|||||.|||-||..+-.+ -=++|||||+.+|-+..-.++.+.|++++ .|.|+|+|.|
T Consensus 463 ~fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEH 541 (935)
T COG0178 463 GFLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEec
Confidence 3555554455554 333469999999999999999877 35788999999999998889999888875 3899999999
Q ss_pred ChhHHHhcc-------------CeEEEEcChhHHhhcCc
Q psy4347 678 RLSTIKHLL-------------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 678 rls~i~~~d-------------g~i~~~g~~~~L~~~~~ 703 (816)
+.++|+.|| |+|+..|+++++++.+.
T Consensus 542 Dedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~ 580 (935)
T COG0178 542 DEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPE 580 (935)
T ss_pred CHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence 999999999 99999999999998863
No 443
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=3e-08 Score=92.36 Aligned_cols=117 Identities=38% Similarity=0.479 Sum_probs=87.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCCc-ceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCH
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNA-GAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSY 587 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~-G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~ 587 (816)
+|..+.|+||+||||||+++.+++.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999887765 6677776654443322211
Q ss_pred HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH------
Q psy4347 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS------ 661 (816)
Q Consensus 588 ~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~------ 661 (816)
.....+......+++.++..+++|-..+|+++++||+....+.........
T Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 222233446788899999999999999999999999999999988887654
Q ss_pred -HHHHhcCCCEEEEEecC
Q psy4347 662 -SLKTASRNKTTICIAHR 678 (816)
Q Consensus 662 -~l~~~~~~~T~i~IaHr 678 (816)
.......+..+|.++|.
T Consensus 108 ~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 108 LLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHhcCCCEEEEEeCC
Confidence 22233446777888875
No 444
>PRK14079 recF recombination protein F; Provisional
Probab=98.90 E-value=1.4e-08 Score=113.39 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=44.1
Q ss_pred CCCChhHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4347 619 LKLSGGEKQRVAIARAIL---------KNTPILVFDEATSSLDSITENNILSSLKTA 666 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll---------~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~ 666 (816)
.-+|+||++++++|+.|+ .+|++++||||+|.||......+.+.|...
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~ 318 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL 318 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC
Confidence 457999999999999998 899999999999999999999999888654
No 445
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.90 E-value=3.4e-09 Score=108.77 Aligned_cols=69 Identities=28% Similarity=0.426 Sum_probs=58.9
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCC------------CCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHH
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFE------------PNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~ 575 (816)
++|++++|+||||||||||+++|++.++ |..|+ ++|.|+..++.+.+++.+ .|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 88898 699999888888888754 577888888888
Q ss_pred HHHhcCC
Q psy4347 576 YNINYGD 582 (816)
Q Consensus 576 eNi~~~~ 582 (816)
+|. ||.
T Consensus 78 ~~~-y~~ 83 (205)
T PRK00300 78 GNY-YGT 83 (205)
T ss_pred Ccc-ccC
Confidence 773 553
No 446
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.90 E-value=2.5e-09 Score=135.83 Aligned_cols=70 Identities=31% Similarity=0.372 Sum_probs=64.1
Q ss_pred CCCCCChhHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 617 RGLKLSGGEKQRVAIARAI----LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 617 ~G~~LSGGqrQRiaiARAl----l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
....||||||||++|||++ +++|+++||||||++||+.+...+.+.|+.+.++.|+|+|||++..+..||
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d 1159 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVAD 1159 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhh
Confidence 3458999999999999998 477899999999999999999999999998877789999999999988877
No 447
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.85 E-value=1.3e-08 Score=106.31 Aligned_cols=140 Identities=14% Similarity=0.166 Sum_probs=88.0
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-CcceEEECCEeCCCCChHHHhhccEEEcCCCCcc-ccc
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDT 573 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~T 573 (816)
+..|-+|++|++++|++++|.||||+||||+++.+....-. +-| ..+.. + ...++++ ..+| ...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G------~~vpa---~--~~~i~~~---~~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG------MDVPA---K--SMRLSLV---DRIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC------CccCc---c--ccEeccc---cEEEEecC
Confidence 35788999999999999999999999999999988764211 111 11100 0 0112221 1223 223
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q psy4347 574 ILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653 (816)
Q Consensus 574 i~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~ 653 (816)
..||+..+.... ..|+ +|++-.=....+|+++|||||.+++|+
T Consensus 82 ~~d~~~~~~StF-~~e~------------------------------------~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 82 ARDDIMKGESTF-MVEL------------------------------------SETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred cccccccCcchH-HHHH------------------------------------HHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 334443222110 1122 222211122357999999999999999
Q ss_pred HHHHHHHHH-HHHhcC--CCEEEEEecChhHHHhcc
Q psy4347 654 ITENNILSS-LKTASR--NKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 654 ~te~~i~~~-l~~~~~--~~T~i~IaHrls~i~~~d 686 (816)
.....+..+ ++.+.+ ++++|++||.++.+....
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 998888777 555544 789999999999887664
No 448
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.85 E-value=3.3e-09 Score=108.60 Aligned_cols=64 Identities=27% Similarity=0.375 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHH
Q psy4347 619 LKLSGGEKQRVAIARAILKNT---PILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTI 682 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~~p---~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i 682 (816)
..+|.|++|.+.|+-+++..+ .++++|||-++|+|...+.+.+.|++..+ +.-+|+.||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 346999999999998888776 89999999999999999999999988766 78999999998754
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.84 E-value=1.4e-08 Score=98.57 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=80.5
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHH
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETI 591 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~ 591 (816)
++.|.|++|+||||+++.+++...+..|.|.+-..+... ...+... ......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~~~~------------------~~~~~~------- 52 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELTERL------------------IGESLK------- 52 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHHHHH------------------hhhhhc-------
Confidence 378999999999999999999888877777665443221 1111111 000000
Q ss_pred HHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH----------HHHHHHHH
Q psy4347 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS----------ITENNILS 661 (816)
Q Consensus 592 ~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~----------~te~~i~~ 661 (816)
..+++ ...+.......+.++.++++.+++...+|+++|+||+++-++. ...+.+.+
T Consensus 53 -------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 53 -------------GALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred -------------ccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 00001 0111112223345566688999999999999999999965544 43455555
Q ss_pred HHHHhc-CCCEEEEEecChhHHHh
Q psy4347 662 SLKTAS-RNKTTICIAHRLSTIKH 684 (816)
Q Consensus 662 ~l~~~~-~~~T~i~IaHrls~i~~ 684 (816)
.+.... .+.|+|+++|.......
T Consensus 119 l~~~~~~~~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 119 LLERARKGGVTVIFTLQVPSGDKG 142 (165)
T ss_pred HHHHHhcCCceEEEEEecCCcccc
Confidence 544443 37899999999875543
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.84 E-value=1.3e-08 Score=104.61 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=74.2
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCC-cceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHH
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEET 590 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~-~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i 590 (816)
.+.|+||+||||||+++.|++.+.+. .|.|..-+.++. +... ...+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeecc-----------------------
Confidence 58999999999999999999988754 567666554442 1100 0111222210
Q ss_pred HHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy4347 591 IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK 670 (816)
Q Consensus 591 ~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~ 670 (816)
+|.+...++. +|++||..+|+++++||+. |.++-..+.+ ....|.
T Consensus 56 -----------------------vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~~G~ 100 (198)
T cd01131 56 -----------------------VGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT---AAETGH 100 (198)
T ss_pred -----------------------cCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHHcCC
Confidence 1111111211 4889999999999999996 6665444443 344589
Q ss_pred EEEEEecChhHHHhccCeEE
Q psy4347 671 TTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 671 T~i~IaHrls~i~~~dg~i~ 690 (816)
+++.++|..+..... .|++
T Consensus 101 ~v~~t~Ha~~~~~~~-~Rl~ 119 (198)
T cd01131 101 LVMSTLHTNSAAKTI-DRII 119 (198)
T ss_pred EEEEEecCCcHHHHH-hHHH
Confidence 999999999877554 4443
No 451
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=9.1e-09 Score=129.95 Aligned_cols=74 Identities=22% Similarity=0.166 Sum_probs=67.8
Q ss_pred CCCChhHHHHHHHHHHhcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccC
Q psy4347 619 LKLSGGEKQRVAIARAILK----------NTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLG 687 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~----------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg 687 (816)
.+|||||++|++||+||+. +|++|||||||++||+.+...+.+.|+++. .|+|++||||.+......+.
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPH 1028 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCC
Confidence 5899999999999999985 799999999999999999999999998864 47899999999999999988
Q ss_pred eEEEE
Q psy4347 688 YKAHR 692 (816)
Q Consensus 688 ~i~~~ 692 (816)
+|+..
T Consensus 1029 ~i~v~ 1033 (1042)
T TIGR00618 1029 RILVK 1033 (1042)
T ss_pred EEEEE
Confidence 88665
No 452
>PRK01156 chromosome segregation protein; Provisional
Probab=98.81 E-value=9.5e-09 Score=127.99 Aligned_cols=70 Identities=27% Similarity=0.333 Sum_probs=60.1
Q ss_pred CCCCCChhHHHHHHH------HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC--C-CEEEEEecChhHHHhcc
Q psy4347 617 RGLKLSGGEKQRVAI------ARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SR--N-KTTICIAHRLSTIKHLL 686 (816)
Q Consensus 617 ~G~~LSGGqrQRiai------ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~--~-~T~i~IaHrls~i~~~d 686 (816)
....|||||+||++| ||+++.+|++++|||||++||+.....+.+.|... .. + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 457899999999975 59999999999999999999999999999888642 22 2 48999999999887665
No 453
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.81 E-value=2.6e-08 Score=100.19 Aligned_cols=69 Identities=14% Similarity=-0.000 Sum_probs=51.9
Q ss_pred cccCCCCCCChhHHH------HHHHHHHhccCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCCEEEEEecChhH
Q psy4347 613 QVGERGLKLSGGEKQ------RVAIARAILKNTPILVFDEATSSLD---SITENNILSSLKTAS-RNKTTICIAHRLST 681 (816)
Q Consensus 613 ~VGE~G~~LSGGqrQ------RiaiARAll~~p~iLiLDE~Ts~LD---~~te~~i~~~l~~~~-~~~T~i~IaHrls~ 681 (816)
.+......+|+||+| ....+.+.-.+|+++++||||+.+| ......+.+.++.+. .|.|+|+++|....
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 344445678999998 4444444567899999999999999 777777777766643 47899999998775
No 454
>PRK03918 chromosome segregation protein; Provisional
Probab=98.77 E-value=1.2e-08 Score=126.70 Aligned_cols=74 Identities=24% Similarity=0.355 Sum_probs=61.9
Q ss_pred CCCChhHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEE
Q psy4347 619 LKLSGGEKQ------RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 619 ~~LSGGqrQ------RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
..|||||+| |+||||+++.+|+++||||||++||+.....+.+.|..+. .+.|+|+|||+......| .+++.
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~-d~~~~ 865 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAA-DYVIR 865 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhC-CeEEE
Confidence 579999999 5666778999999999999999999999999999998754 357999999999866555 45554
Q ss_pred Ec
Q psy4347 692 RK 693 (816)
Q Consensus 692 ~g 693 (816)
..
T Consensus 866 l~ 867 (880)
T PRK03918 866 VS 867 (880)
T ss_pred EE
Confidence 43
No 455
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.75 E-value=1.4e-08 Score=129.41 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=63.2
Q ss_pred CCCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 619 LKLSGGEKQRVAIARAIL----KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll----~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
..||||||++++||++++ +.||++|||||+++||+.....+.+.|.++.++.++|+|||+..++..||
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d 1144 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYAD 1144 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcc
Confidence 479999999999999997 57899999999999999999999999999877889999999999888777
No 456
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.75 E-value=1.3e-08 Score=115.67 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=72.6
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEEC---CEeCCCCChHH
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID---GKNINDVDLDS 555 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~id---G~di~~~~~~~ 555 (816)
.+.++.++++..|.. +..+++.++ +|.+||+++|+|+||||||||+++|.++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 137 PPAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred CCCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 456899999999975 578999996 999999999999999999999999999999999999885 56666554333
Q ss_pred ----HhhccEEEcCCC
Q psy4347 556 ----LRRHIAIVPQDP 567 (816)
Q Consensus 556 ----lr~~i~~V~Q~~ 567 (816)
.++.|++|+|..
T Consensus 214 l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 214 LADNLKKAVAVVATSD 229 (450)
T ss_pred HHHhhCCeEEEEEcCC
Confidence 235799999964
No 457
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.73 E-value=3.3e-08 Score=124.61 Aligned_cols=74 Identities=28% Similarity=0.249 Sum_probs=64.5
Q ss_pred CCCCChhHHHHHHHHHHhcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCe
Q psy4347 618 GLKLSGGEKQRVAIARAILK--------NTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGY 688 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~--------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~ 688 (816)
...|||||+|+++|||||.. +|++|||||||++||+.+...+.+.|..+. .|+||+||||-.......+-+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 47899999999999999995 899999999999999999999999998874 589999999976666666555
Q ss_pred EEE
Q psy4347 689 KAH 691 (816)
Q Consensus 689 i~~ 691 (816)
|..
T Consensus 1027 i~V 1029 (1047)
T PRK10246 1027 IKV 1029 (1047)
T ss_pred EEE
Confidence 544
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.67 E-value=2.4e-07 Score=97.48 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHHHHHh-cCCCEEEEEecChhH
Q psy4347 620 KLSGGEKQRVAIARAILK--NTPILVFDEATSSLD---SITENNILSSLKTA-SRNKTTICIAHRLST 681 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~--~p~iLiLDE~Ts~LD---~~te~~i~~~l~~~-~~~~T~i~IaHrls~ 681 (816)
..|.++++.+..++.++. +|+++++||||+.+| ......+.+.++.+ .+++|+++++|....
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 456788999999999998 999999999996544 44444444445442 347899999997653
No 459
>PRK12369 putative transporter; Reviewed
Probab=98.60 E-value=0.00024 Score=78.74 Aligned_cols=62 Identities=10% Similarity=0.140 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4347 398 AMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLML 459 (816)
Q Consensus 398 ~~~~vl~~G~~lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~ 459 (816)
..++-+.+.+-....|+++.|.+........++..+++.+.+.+.++.+-.+..+|+.++.+
T Consensus 259 ~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 259 MVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344567778999999999999999999999999999999999999999999988754
No 460
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.60 E-value=1.5e-07 Score=115.94 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=44.1
Q ss_pred hccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh
Q psy4347 635 ILKNTPILVFDEATSSL-DSITENNILSSLKTAS-RNKTTICIAHRLSTIKH 684 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~L-D~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~ 684 (816)
+..+|+++++|||+++| |+...+.+.+.+++.+ .+.++|++||+++.+..
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~ 700 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAER 700 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhc
Confidence 36799999999999999 7999999999998764 47899999999999864
No 461
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.59 E-value=3.7e-08 Score=111.97 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=66.3
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc---eEEECCEeCCCCChHHH------hhccEEEcCC
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG---AIYIDGKNINDVDLDSL------RRHIAIVPQD 566 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G---~I~idG~di~~~~~~~l------r~~i~~V~Q~ 566 (816)
+..+++++ |+|.+||+++|+|+||||||||+++|+|+++|+.+ .|-.+|.+++++..+.+ |..+++++||
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45789999 99999999999999999999999999999999864 34445555555443333 5579999999
Q ss_pred CCcc-cccHHHHHh
Q psy4347 567 PVLF-HDTILYNIN 579 (816)
Q Consensus 567 ~~LF-~~Ti~eNi~ 579 (816)
...+ .-++.+|..
T Consensus 221 ~s~~~rl~a~e~a~ 234 (434)
T PRK07196 221 ESPLMRIKATELCH 234 (434)
T ss_pred CChhhhHHHHHHHH
Confidence 8887 457888874
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.53 E-value=1.8e-07 Score=116.45 Aligned_cols=73 Identities=26% Similarity=0.363 Sum_probs=62.0
Q ss_pred CCCChhHHH------HHHHHHHhccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CEEEEEecChhHHHh
Q psy4347 619 LKLSGGEKQ------RVAIARAILKN-----T-PILVFDEATSSLDSITENNILSSLKTASR-N-KTTICIAHRLSTIKH 684 (816)
Q Consensus 619 ~~LSGGqrQ------RiaiARAll~~-----p-~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~-~T~i~IaHrls~i~~ 684 (816)
..||||||| |+||||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 3 67999999999999999999998888653 4 489999999999988
Q ss_pred ccCeEEE
Q psy4347 685 LLGYKAH 691 (816)
Q Consensus 685 ~dg~i~~ 691 (816)
||-.+..
T Consensus 860 ad~~~~~ 866 (880)
T PRK02224 860 ADDLVRV 866 (880)
T ss_pred cCeeEEe
Confidence 7744433
No 463
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.52 E-value=0.00023 Score=80.87 Aligned_cols=233 Identities=8% Similarity=0.082 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4347 191 CSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALI 270 (816)
Q Consensus 191 ~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~~v~~ 270 (816)
+...+..+..++..++.-+...-|.+.+.++-+++. ..+ .--+||.+|+.........+...++.++++++..
T Consensus 150 ~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie-----nPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF 222 (409)
T PRK11098 150 IAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE-----GAAQRVQEDTMRFASTLENLGVSFINAIMTLIAF 222 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-----CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555544444444444455555444332 111 1346777776666555555556666666655433
Q ss_pred HHHHHHhhhhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcc
Q psy4347 271 SSILSYKCGSE-------------FSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNN 337 (816)
Q Consensus 271 ~~il~~~~~~~-------------LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~ 337 (816)
..+ +..+|.. |..++++...+-.++..+++++..+..-+.++.+++..-.+.-.=. |.
T Consensus 223 ~~I-LW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvre--------na 293 (409)
T PRK11098 223 LPV-LVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGED--------DA 293 (409)
T ss_pred HHH-HHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhh--------hh
Confidence 333 3333433 2222222233333444455555555544444444443322211101 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Q psy4347 338 EKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTV 417 (816)
Q Consensus 338 E~~~~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltv 417 (816)
|+.|..+.++..++..+...+. ......++........+..++-+++.+-....|++|.
T Consensus 294 E~~E~~~L~~~F~~V~~N~~rl---------------------~~~~~~l~~f~~~y~~~~~i~P~iv~aP~y~aG~Itl 352 (409)
T PRK11098 294 DRATPPTVRELFSNVRKNYFRL---------------------YFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITL 352 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 2333334444333333332222 0111111222222222333333344567788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4347 418 GDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLK 460 (816)
Q Consensus 418 G~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~ 460 (816)
|.+........++..+++.+.+.+.++.+-.+..+|+.++.+.
T Consensus 353 G~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 353 GLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653
No 464
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.51 E-value=0.00034 Score=76.02 Aligned_cols=168 Identities=14% Similarity=0.084 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-CChh---HHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4347 190 ICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLN-RQTG---ALSKIIDRGSRGINFVLSAMVFNIVPTIF 265 (816)
Q Consensus 190 ~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~-~~~G---~l~sri~~d~~~i~~~~~~~~~~ii~~v~ 265 (816)
+...++.....|+...++-+....+...+.++.++-. .||.- ...+ .-=+||++|++........+..+++..++
T Consensus 77 ~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~ 155 (281)
T PF06472_consen 77 IASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPIL 155 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666666666666666555 55552 2222 34568888877776666666677777777
Q ss_pred HHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHH
Q psy4347 266 ELALISSILSYKCGSEFSL-LAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADR 344 (816)
Q Consensus 266 ~~v~~~~il~~~~~~~LaL-i~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r 344 (816)
+++..+.++. ..+..++. ++++...+...+..++++...+...+.++.+++..........+-+.|-.++.|+.|.++
T Consensus 156 ~l~~f~~~L~-~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~ 234 (281)
T PF06472_consen 156 DLISFSVILW-SISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRR 234 (281)
T ss_pred HHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHH
Confidence 6655444443 33444443 555555555566667777777777777777888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy4347 345 YEGVLKKYEQAALKT 359 (816)
Q Consensus 345 ~~~~~~~~~~~~~k~ 359 (816)
.++..++..+...+.
T Consensus 235 l~~~f~~l~~~~~~~ 249 (281)
T PF06472_consen 235 LDRRFDALIDNWRRL 249 (281)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888776655444
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.51 E-value=1.5e-06 Score=107.55 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=55.6
Q ss_pred HHHHhccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc--CeEEEEcChhHHh
Q psy4347 631 IARAILKNTPILVFDEATSSL-DSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL--GYKAHRKTSTNLV 699 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~L-D~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d--g~i~~~g~~~~L~ 699 (816)
|+|++..+|+++++|||+++| |+...+.+.+.++..+ .+.+++++||+++.+...+ ..|++......++
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhCchHHHHHHcCCcceec
Confidence 788999999999999999999 7999999999998764 4789999999999997754 3344444444444
No 466
>PRK01889 GTPase RsgA; Reviewed
Probab=98.50 E-value=1e-07 Score=106.75 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=76.0
Q ss_pred cceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHH
Q psy4347 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNI 578 (816)
Q Consensus 499 vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi 578 (816)
-++.+.-.+++|++++|+|+||+|||||++.|+|...|..|+|.++|...+. ...++++.+++|+..+|+.+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566666788999999999999999999999999999999999998754322 2346789999999999988888888
Q ss_pred hcCCCCC----CHHHHHHHHHHcCCh
Q psy4347 579 NYGDKSK----SYEETIEAAKLADLH 600 (816)
Q Consensus 579 ~~~~~~~----~~~~i~~a~~~a~l~ 600 (816)
.+.++.. ...++.+.++.+..+
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~ 286 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFR 286 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCC
Confidence 7765421 123455555544443
No 467
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.49 E-value=4e-07 Score=91.43 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=54.9
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHhccCeEEE
Q psy4347 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
.-|-||-=---+.|.+- +.-|.|||||-|+|.|.-+-.++..|+++.+ |.-+||.||-+=.+..-.-+|.+
T Consensus 129 ~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~ 200 (233)
T COG3910 129 HMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYE 200 (233)
T ss_pred hhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEE
Confidence 45889877666777664 5689999999999999999999999998754 67889999987655444344433
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.47 E-value=1.7e-07 Score=95.33 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=59.8
Q ss_pred cceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCC--cc-cccHH
Q psy4347 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPV--LF-HDTIL 575 (816)
Q Consensus 499 vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~--LF-~~Ti~ 575 (816)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+.+.+-...+ .+..++++.|... .+ ..|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455567789999999999999999999999999999999999999775432221 2455677766543 33 34777
Q ss_pred HHHhc
Q psy4347 576 YNINY 580 (816)
Q Consensus 576 eNi~~ 580 (816)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77754
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.43 E-value=1.9e-07 Score=107.65 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=84.0
Q ss_pred eeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhc
Q psy4347 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINY 580 (816)
Q Consensus 501 ~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~ 580 (816)
++.++.+++|+++++|||||+||||++..|++.+.+..|.. .|++|.+|+ |.-+..||+.+
T Consensus 247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHH
Confidence 34455567799999999999999999999999887777742 578999988 66677888875
Q ss_pred C-----CCC---CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC-----CEEEEeCC
Q psy4347 581 G-----DKS---KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT-----PILVFDEA 647 (816)
Q Consensus 581 ~-----~~~---~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p-----~iLiLDE~ 647 (816)
. -+. .+..+. ..... .+.+.....|..-|..-. ...+.-+.+++.++ .+|+||..
T Consensus 308 ~AeilGVpv~~~~~~~Dl--~~aL~-------~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt 375 (484)
T PRK06995 308 YGKILGVPVHAVKDAADL--RLALS-------ELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNAT 375 (484)
T ss_pred HHHHhCCCeeccCCchhH--HHHHH-------hccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCC
Confidence 3 121 111121 11222 222222334444332110 11223333444444 68999998
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChh
Q psy4347 648 TSSLDSITENNILSSLKTAS-RNKTTICIAHRLS 680 (816)
Q Consensus 648 Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls 680 (816)
|..-| +.+.++... .+.+-+|+|+=-+
T Consensus 376 ~~~~~------l~~i~~~f~~~~~~g~IlTKlDe 403 (484)
T PRK06995 376 SHGDT------LNEVVQAYRGPGLAGCILTKLDE 403 (484)
T ss_pred CcHHH------HHHHHHHhccCCCCEEEEeCCCC
Confidence 87722 333333321 2567788887433
No 470
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=5e-07 Score=101.50 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=58.1
Q ss_pred CCCChhHHHHHHHHHHhcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh
Q psy4347 619 LKLSGGEKQRVAIARAILK---------NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~---------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~ 684 (816)
..+|.||+++++||.+|+. +|+||+||||+|.||+.....+.+.|.+. +.++++++|++..+..
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~~ 346 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLKE 346 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhccc
Confidence 4689999999999999999 99999999999999999999999999764 6799999999876654
No 471
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.35 E-value=5.2e-07 Score=101.02 Aligned_cols=88 Identities=24% Similarity=0.252 Sum_probs=64.8
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCC--Cc-ceEEECCEeCCCCChHHHhhccEEEcCCC-----CcccccHHHHHh
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEP--NA-GAIYIDGKNINDVDLDSLRRHIAIVPQDP-----VLFHDTILYNIN 579 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p--~~-G~I~idG~di~~~~~~~lr~~i~~V~Q~~-----~LF~~Ti~eNi~ 579 (816)
++|..++|+||+||||||+++.|++++.+ .. +.|.....++ ++..+.++...++|.|.. .-|...|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 33 4666655555 577777777778888864 357889999887
Q ss_pred cCCCC-------CCHHHHHHHHHHc
Q psy4347 580 YGDKS-------KSYEETIEAAKLA 597 (816)
Q Consensus 580 ~~~~~-------~~~~~i~~a~~~a 597 (816)
. +|+ .+.+.+..|++.+
T Consensus 211 ~-~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 R-KPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred c-CCCEEeeeeeCCHHHHHHHHHHH
Confidence 6 343 2344455666664
No 472
>PRK08149 ATP synthase SpaL; Validated
Probab=98.35 E-value=3.8e-07 Score=103.69 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=60.9
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCc---ceEEECCEeCCCCChHHHh----hccEEEcCC
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA---GAIYIDGKNINDVDLDSLR----RHIAIVPQD 566 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~---G~I~idG~di~~~~~~~lr----~~i~~V~Q~ 566 (816)
+..+++++ +++.+||+++|+|+||+|||||+++|+++.+++. |.|-.+|.++.++..+.++ +++++|+..
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 35789999 9999999999999999999999999999999998 9999999999887655554 567777653
No 473
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.32 E-value=5.5e-07 Score=91.04 Aligned_cols=66 Identities=29% Similarity=0.417 Sum_probs=48.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh-ccEEEcCCCCcc-cccHHHHHhc
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR-HIAIVPQDPVLF-HDTILYNINY 580 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~-~i~~V~Q~~~LF-~~Ti~eNi~~ 580 (816)
+||.++|+|+|||||||+++.|++++.| +.+||.++... ...|+ ..++.+|+...+ ..++.+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999987 68999888532 23333 356677764433 4455566554
No 474
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.31 E-value=8.5e-07 Score=93.72 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=36.8
Q ss_pred hccCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhc--CCCEEEEEecChhH
Q psy4347 635 ILKNTPILVFDEATSS------LDSITENNILSSLKTAS--RNKTTICIAHRLST 681 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~------LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~ 681 (816)
...+|+++|+| |+++ +|+.....+.+.|+++. .++|+|+++|....
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 35799999999 7654 69988888888887754 37999999998643
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.31 E-value=5e-07 Score=92.44 Aligned_cols=110 Identities=16% Similarity=0.276 Sum_probs=61.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC--CChHHHhhccEEEcCCCCcccccHHHHHhcCCCCC-CHH
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK-SYE 588 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~--~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~-~~~ 588 (816)
+++|+||||||||||++.|.+++ ..|.+.+-+.|--- .+....+... +..+..|.. +.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 62 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERK----------------NNNYDHPDAFDFD 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhc----------------cCCCCCCCcccHH
Confidence 48999999999999999999988 34444444443211 1111111111 112222222 223
Q ss_pred HHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q psy4347 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653 (816)
Q Consensus 589 ~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~ 653 (816)
.+.+.++.....+.+ ..| ..+.|.|++++..+ .+.+|+++|+|+|.+..++
T Consensus 63 ~~~~~l~~l~~~~~~-~~p----------~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 63 LLISHLQDLKNGKSV-EIP----------VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHCCCCE-ecc----------ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 333333332222211 122 24667777766554 5788999999999999886
No 476
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.30 E-value=4.4e-06 Score=93.23 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=77.3
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCC-CcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK 585 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~ 585 (816)
.+++..+.|.||+||||||+++.+++.+.+ .+|.|..-+.++.-. .......+.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q-------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQ-------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEc--------------------
Confidence 457899999999999999999999997764 467776654433210 0000011111
Q ss_pred CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4347 586 SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665 (816)
Q Consensus 586 ~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~ 665 (816)
..+|..+.. ---++++||-.+|+++++||+. |+++.....++
T Consensus 175 --------------------------~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a--- 216 (343)
T TIGR01420 175 --------------------------REVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA--- 216 (343)
T ss_pred --------------------------cccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---
Confidence 011111111 1235788999999999999997 88887655444
Q ss_pred hcCCCEEEEEecChhHHHhc
Q psy4347 666 ASRNKTTICIAHRLSTIKHL 685 (816)
Q Consensus 666 ~~~~~T~i~IaHrls~i~~~ 685 (816)
...|.+++...|..+.....
T Consensus 217 a~tGh~v~~T~Ha~~~~~~~ 236 (343)
T TIGR01420 217 AETGHLVFGTLHTNSAAQTI 236 (343)
T ss_pred HHcCCcEEEEEcCCCHHHHH
Confidence 44589999999998887554
No 477
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.28 E-value=8.2e-07 Score=90.25 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=48.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP 567 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~ 567 (816)
|+.++|+||||||||||+++|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 889999999999999999999999876 5888898888766666778899999874
No 478
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.25 E-value=1.3e-07 Score=110.04 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=88.9
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHH--hcCCCCCcceEEECCEeCCCCChHHHhh---ccEEEcCCCCcccccHHHHHhc
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLL--YRFFEPNAGAIYIDGKNINDVDLDSLRR---HIAIVPQDPVLFHDTILYNINY 580 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll--~gl~~p~~G~I~idG~di~~~~~~~lr~---~i~~V~Q~~~LF~~Ti~eNi~~ 580 (816)
=+++|..+.|.|++|||||||..-. .|.-++.+..+++... -+++++++ .+|+-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4889999999999999999999865 4555556677777663 34455544 45554443210 011111
Q ss_pred CCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHHHHH
Q psy4347 581 GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA--RAILKNTPILVFDEATSSLDSITENN 658 (816)
Q Consensus 581 ~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA--RAll~~p~iLiLDE~Ts~LD~~te~~ 658 (816)
-+.. ........++..++.+++..++ ..+|+|++|||.|+ .++..+|+.. ....+.
T Consensus 88 ~~~~-~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~ 145 (484)
T TIGR02655 88 LDAS-PDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRRE 145 (484)
T ss_pred EecC-chhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHH
Confidence 1110 0011111223334444444444 57899999999999 6776665444 455666
Q ss_pred HHHHHHHhc-CCCEEEEEecChhH
Q psy4347 659 ILSSLKTAS-RNKTTICIAHRLST 681 (816)
Q Consensus 659 i~~~l~~~~-~~~T~i~IaHrls~ 681 (816)
+.+.++.+. .|+|+|+++|+.+.
T Consensus 146 l~~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 146 IFRLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred HHHHHHHHHHCCCEEEEEecCccc
Confidence 777666643 48999999998764
No 479
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.18 E-value=2.5e-06 Score=110.18 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=56.1
Q ss_pred CCCCCChhHHHHHH----HHHH--------hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 617 RGLKLSGGEKQRVA----IARA--------ILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 617 ~G~~LSGGqrQRia----iARA--------ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
+...||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++|+++|++.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 35789999999996 6766 55899999999999999999999999999988 789999999987
No 480
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.15 E-value=2.2e-06 Score=97.83 Aligned_cols=102 Identities=20% Similarity=0.321 Sum_probs=72.2
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-CcceEEE---CCEeCCCCChHHHh---hccEEE-----c
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIYI---DGKNINDVDLDSLR---RHIAIV-----P 564 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-~~G~I~i---dG~di~~~~~~~lr---~~i~~V-----~ 564 (816)
..+++++ |++.+||+++|+|+||||||||++.|+|+.++ +.|.|.+ +|.++.++..+.++ ...++| +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 4588888 99999999999999999999999999998844 4567777 45777666555554 235566 9
Q ss_pred CCCC------cccccHHHHHhcCCCC-----CCHHHHHHHHHHcCC
Q psy4347 565 QDPV------LFHDTILYNINYGDKS-----KSYEETIEAAKLADL 599 (816)
Q Consensus 565 Q~~~------LF~~Ti~eNi~~~~~~-----~~~~~i~~a~~~a~l 599 (816)
|+|. ....+|.|.++.-..+ .+..+..++.+..++
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 9864 2345788888643222 123455666666665
No 481
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.14 E-value=6.7e-06 Score=98.39 Aligned_cols=108 Identities=21% Similarity=0.302 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcc--------eEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAG--------AIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG 581 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G--------~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~ 581 (816)
.+.+.|+||+||||||+++++.++..+..| -|.+||.++. .+...+. |-.++
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHhcC
Confidence 456999999999999999999999876544 4888887663 3332221 11122
Q ss_pred CCC-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q psy4347 582 DKS-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660 (816)
Q Consensus 582 ~~~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~ 660 (816)
... ...+...+.++..++.+....+. ..+||| +|+||| +..||+.....+.
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~g~v-----------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKTGLV-----------TDAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhcCch-----------hhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 110 00112233344445543322221 357777 999999 7999999999999
Q ss_pred HHHHH
Q psy4347 661 SSLKT 665 (816)
Q Consensus 661 ~~l~~ 665 (816)
+.|++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 99875
No 482
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.14 E-value=1.4e-06 Score=90.13 Aligned_cols=29 Identities=45% Similarity=0.760 Sum_probs=27.1
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
++|++++|+||||||||||++.|.+++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999999864
No 483
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.14 E-value=1.3e-05 Score=75.36 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEEecChh
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS------RNKTTICIAHRLS 680 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~------~~~T~i~IaHrls 680 (816)
.+.....++...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999998765 5666677777777753 4567778877654
No 484
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.13 E-value=1.2e-05 Score=99.32 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=44.6
Q ss_pred HhccCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhc
Q psy4347 634 AILKNTPILVFDEATSSLD-SITENNILSSLKTAS-RNKTTICIAHRLSTIKHL 685 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD-~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~ 685 (816)
.+-.+|.++++|||...|| +...+.+.+.+++.+ .+..++++||.++.+...
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s 691 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKS 691 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhC
Confidence 4567899999999999999 888888988888764 478999999999988764
No 485
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.13 E-value=3.6e-06 Score=84.56 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=46.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEE-----------CCEeCCCCChHHHh-----hccEEEcCCCCcccc
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI-----------DGKNINDVDLDSLR-----RHIAIVPQDPVLFHD 572 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~i-----------dG~di~~~~~~~lr-----~~i~~V~Q~~~LF~~ 572 (816)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.+.+. +.++.+.|...++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65555 67776666665553 348888887655544
No 486
>PLN02796 D-glycerate 3-kinase
Probab=98.13 E-value=9.3e-07 Score=97.65 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=53.7
Q ss_pred cccceeeeEEe---eCCcE-----EEEeCCCCCchhHHHHHHhcCCCCC---cceEEECCEeCCCCChHHHhh
Q psy4347 497 KRIFSNLNFTI---PAGKS-----VAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 497 ~~vL~~isl~i---~~Ge~-----vaivG~sGsGKSTl~~ll~gl~~p~---~G~I~idG~di~~~~~~~lr~ 558 (816)
..+++++++.+ ++|+. +||+|+||||||||++.|.+++.+. .|.|.+||..+...+...+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 46899999998 67887 9999999999999999999999875 688999999887766666665
No 487
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.10 E-value=2.3e-06 Score=85.94 Aligned_cols=76 Identities=29% Similarity=0.369 Sum_probs=51.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCC------------CCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHH
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFE------------PNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYN 577 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eN 577 (816)
|++++|+||||||||||++.|++.++ |..|+ ++|.+..-++.+.+.+.+ .++.+++..++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999763 33444 356555555555555543 46666777667677
Q ss_pred HhcCCCCCCHHHHHHHH
Q psy4347 578 INYGDKSKSYEETIEAA 594 (816)
Q Consensus 578 i~~~~~~~~~~~i~~a~ 594 (816)
. ||. ..+.+.+++
T Consensus 76 ~-y~~---~~~~i~~~~ 88 (180)
T TIGR03263 76 Y-YGT---PKSPVEEAL 88 (180)
T ss_pred e-eCC---cHHHHHHHH
Confidence 3 553 244555554
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.09 E-value=9.5e-06 Score=89.59 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=49.7
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC------ChHHHhhccEEEcCCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV------DLDSLRRHIAIVPQDPV 568 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~------~~~~lr~~i~~V~Q~~~ 568 (816)
++|++++++||+||||||++..|++.+.+..|+|.+.+.|.... ....-|..+.+++|...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~ 178 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG 178 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCC
Confidence 46899999999999999999999999999999999999887542 22234566888888543
No 489
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.08 E-value=1.5e-05 Score=102.24 Aligned_cols=45 Identities=33% Similarity=0.494 Sum_probs=37.4
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHh-cCCCCCcceEEECCE
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLY-RFFEPNAGAIYIDGK 546 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~-gl~~p~~G~I~idG~ 546 (816)
=+++..+.+++++|+|++|+|||||++.+. ++....+|.+.+++.
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 356778889999999999999999999994 444556899999874
No 490
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.04 E-value=1.6e-06 Score=84.07 Aligned_cols=72 Identities=29% Similarity=0.461 Sum_probs=54.9
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCC-------------CcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHh
Q psy4347 513 VAIVGGSGSGKSTIIRLLYRFFEP-------------NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNIN 579 (816)
Q Consensus 513 vaivG~sGsGKSTl~~ll~gl~~p-------------~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~ 579 (816)
++|+||||||||||++.|++.+++ ..|+ ++|++..-++...+++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 4454 58888877788887764 457778888888888 4
Q ss_pred cCCCCCCHHHHHHH
Q psy4347 580 YGDKSKSYEETIEA 593 (816)
Q Consensus 580 ~~~~~~~~~~i~~a 593 (816)
||.+ .+.+.++
T Consensus 76 yg~~---~~~i~~~ 86 (137)
T cd00071 76 YGTS---KAAVEEA 86 (137)
T ss_pred ecCc---HHHHHHH
Confidence 7654 3444444
No 491
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.03 E-value=1.9e-05 Score=82.79 Aligned_cols=68 Identities=26% Similarity=0.377 Sum_probs=47.5
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhc-CCCC------CcceEEECCEeCCCCChHHHhh---ccEEEcCCCCcccccHHH
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYR-FFEP------NAGAIYIDGKNINDVDLDSLRR---HIAIVPQDPVLFHDTILY 576 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~g-l~~p------~~G~I~idG~di~~~~~~~lr~---~i~~V~Q~~~LF~~Ti~e 576 (816)
+++|+++.|+||+|||||||+..++. ...| ..+.|+|++.+ ..+.+.+.+ ..+. ...++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~~~~~~-------~~~~~~~ 86 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIAERFGL-------DPEEVLD 86 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHHHHhcc-------ChHhHhc
Confidence 88999999999999999999998763 3344 37899999865 234444433 3333 2235677
Q ss_pred HHhcCCC
Q psy4347 577 NINYGDK 583 (816)
Q Consensus 577 Ni~~~~~ 583 (816)
|+.+.++
T Consensus 87 ~i~~~~~ 93 (235)
T cd01123 87 NIYVARA 93 (235)
T ss_pred CEEEEec
Confidence 7776654
No 492
>PRK15494 era GTPase Era; Provisional
Probab=98.02 E-value=3.2e-06 Score=94.22 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=49.9
Q ss_pred CCccEEEEeeEEEeCCCcccccceeeeEEeeCCc-------EEEEeCCCCCchhHHHHHHhcC
Q psy4347 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGK-------SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 478 ~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge-------~vaivG~sGsGKSTl~~ll~gl 533 (816)
..|.+++++|+|+|++ ..+++++++|++++|+ .++|||.+|+|||||++.+.|-
T Consensus 15 ~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 15 FKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 4688999999999985 5789999999999999 9999999999999999999874
No 493
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.01 E-value=6.5e-06 Score=83.21 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=39.1
Q ss_pred cccCCCCCCChhHHHHHH--HHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q psy4347 613 QVGERGLKLSGGEKQRVA--IARAILK-NTPILVFDEATSSLDSITENNILSSLKTASR 668 (816)
Q Consensus 613 ~VGE~G~~LSGGqrQRia--iARAll~-~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~ 668 (816)
.++.....+|+||+|++. +++.+-. +++++ |||++|.+..+.+.+.|.++.+
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 345555668999999987 6666644 34444 9999999999999999887543
No 494
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.01 E-value=8.6e-06 Score=84.05 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=45.4
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVL 569 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L 569 (816)
.++|+||+|||||||++.+.+.+.+..| +.+-..|........+....++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999888755 55555677665556666677999998764
No 495
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.99 E-value=5.3e-06 Score=85.19 Aligned_cols=56 Identities=27% Similarity=0.352 Sum_probs=43.6
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCC-cceEEECCEeCCCCChHHHhhccEEEcCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDGKNINDVDLDSLRRHIAIVPQDP 567 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-~G~I~idG~di~~~~~~~lr~~i~~V~Q~~ 567 (816)
++|++++|+|+||||||||+++|.+.+.+. .|.+.+||.+++. .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 568999999999999999999999976554 5689999987752 2333466666654
No 496
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.98 E-value=2.9e-05 Score=75.15 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=37.5
Q ss_pred ccccCCCCCCChhHHHHHHHHHH-----hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4347 612 TQVGERGLKLSGGEKQRVAIARA-----ILKNTPILVFDEATSSLDSITENNILSSLKTA 666 (816)
Q Consensus 612 T~VGE~G~~LSGGqrQRiaiARA-----ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~ 666 (816)
..|......++++++++.....+ ....|+++ |+|++|...-.++.+.|.++
T Consensus 114 i~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 114 LVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34555656678998887765554 24456766 99999999999999888653
No 497
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.98 E-value=6.5e-06 Score=93.88 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=59.7
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~ 550 (816)
..++.++++..|.. +..+++++ |++.+||+++|+|+||+|||||++.|+|..+|+.|.+.+.|..-++
T Consensus 128 ~~~~r~~v~~~l~t--Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrE 195 (433)
T PRK07594 128 PAMVRQPITQPLMT--GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE 195 (433)
T ss_pred CceeccCHhheeCC--Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchH
Confidence 35788888888865 57899999 9999999999999999999999999999999999988887764443
No 498
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.95 E-value=8.5e-06 Score=92.78 Aligned_cols=54 Identities=30% Similarity=0.461 Sum_probs=50.1
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~ 550 (816)
+..+++++ |++.+|++++|+|++|+|||||+++|+++.+|+.|.|.+.|..-++
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~e 177 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGRE 177 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHH
Confidence 46799999 9999999999999999999999999999999999999999876655
No 499
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=2.9e-05 Score=87.23 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=34.5
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
.+++++.++.+++|++++++||||+||||++..|...+.
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999998763
No 500
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.93 E-value=4.9e-05 Score=94.22 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=44.1
Q ss_pred CChhHHHHHHHHHHhcc--CCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 621 LSGGEKQRVAIARAILK--NTPILVFDEA---TSSLDSITE-NNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 621 LSGGqrQRiaiARAll~--~p~iLiLDE~---Ts~LD~~te-~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
+|-=+.....+|++|-. ++.++||||+ |+.+|...- ..|.+.|.+. .++++|++||..+....++
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEE 737 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhh
Confidence 44444556666666655 8999999999 999996552 2344444432 2589999999966655554
Done!