Query psy4347
Match_columns 816
No_of_seqs 570 out of 3529
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:16:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5.1E-95 1.8E-99 918.7 62.3 505 182-709 139-650 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 6.8E-88 2.3E-92 792.1 66.1 493 187-704 71-570 (587)
3 4a82_A Cystic fibrosis transme 100.0 3.2E-88 1.1E-92 793.8 61.0 497 183-704 65-568 (578)
4 3qf4_B Uncharacterized ABC tra 100.0 3.3E-88 1.1E-92 796.5 59.7 493 186-705 84-583 (598)
5 4f4c_A Multidrug resistance pr 100.0 6.1E-90 2.1E-94 872.3 46.9 503 187-714 802-1317(1321)
6 3b5x_A Lipid A export ATP-bind 100.0 4.4E-86 1.5E-90 776.3 71.5 493 185-704 71-571 (582)
7 2yl4_A ATP-binding cassette SU 100.0 1.1E-85 3.9E-90 774.7 71.8 499 187-709 70-579 (595)
8 3b60_A Lipid A export ATP-bind 100.0 5.4E-86 1.8E-90 775.5 67.4 493 185-704 71-571 (582)
9 3g5u_A MCG1178, multidrug resi 100.0 3E-85 1E-89 827.6 53.9 501 184-707 113-620 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 3E-78 1E-82 763.8 55.0 496 188-706 758-1264(1284)
11 3nh6_A ATP-binding cassette SU 100.0 2.3E-64 7.8E-69 546.9 25.6 262 440-705 14-282 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 6.9E-54 2.4E-58 451.9 28.5 221 480-701 6-233 (247)
13 2ghi_A Transport protein; mult 100.0 1.5E-52 5.3E-57 444.8 27.1 223 480-703 16-245 (260)
14 1mv5_A LMRA, multidrug resista 100.0 3.6E-53 1.2E-57 445.3 20.0 219 482-702 2-228 (243)
15 2ixe_A Antigen peptide transpo 100.0 6.3E-52 2.2E-56 442.7 27.0 225 479-703 14-248 (271)
16 3gd7_A Fusion complex of cysti 100.0 2.2E-50 7.5E-55 450.4 24.2 222 479-703 17-245 (390)
17 2pze_A Cystic fibrosis transme 100.0 7.6E-49 2.6E-53 408.9 25.8 209 480-703 5-221 (229)
18 2cbz_A Multidrug resistance-as 100.0 1.1E-48 3.7E-53 409.9 22.2 208 481-703 3-220 (237)
19 3tif_A Uncharacterized ABC tra 100.0 7E-48 2.4E-52 403.2 20.1 207 482-698 2-232 (235)
20 3tui_C Methionine import ATP-b 100.0 1.4E-47 5E-52 423.0 23.4 213 480-703 23-256 (366)
21 3gfo_A Cobalt import ATP-bindi 100.0 8.1E-48 2.8E-52 411.6 20.3 208 481-701 7-234 (275)
22 1ji0_A ABC transporter; ATP bi 100.0 9.9E-47 3.4E-51 395.6 24.3 211 481-700 6-228 (240)
23 4g1u_C Hemin import ATP-bindin 100.0 1.8E-46 6.1E-51 399.6 23.4 207 481-701 11-238 (266)
24 2olj_A Amino acid ABC transpor 100.0 1.5E-46 5.2E-51 399.4 22.8 208 481-702 24-250 (263)
25 1vpl_A ABC transporter, ATP-bi 100.0 3.9E-46 1.3E-50 394.8 22.8 207 480-701 14-236 (256)
26 3fvq_A Fe(3+) IONS import ATP- 100.0 6.3E-46 2.2E-50 409.6 24.5 209 481-703 4-231 (359)
27 2pcj_A ABC transporter, lipopr 100.0 3.9E-46 1.3E-50 387.2 21.4 200 481-694 4-222 (224)
28 1b0u_A Histidine permease; ABC 100.0 4.1E-46 1.4E-50 395.9 22.0 208 481-702 6-244 (262)
29 3rlf_A Maltose/maltodextrin im 100.0 4.2E-46 1.4E-50 413.7 21.9 207 481-703 3-226 (381)
30 2yz2_A Putative ABC transporte 100.0 8E-46 2.7E-50 394.5 23.2 208 482-703 3-230 (266)
31 2bbs_A Cystic fibrosis transme 100.0 5.5E-46 1.9E-50 400.3 22.0 204 479-702 38-249 (290)
32 1g6h_A High-affinity branched- 100.0 8.2E-46 2.8E-50 392.5 22.8 203 481-697 7-239 (257)
33 2yyz_A Sugar ABC transporter, 100.0 3.4E-45 1.2E-49 404.4 25.4 207 481-703 3-226 (359)
34 1z47_A CYSA, putative ABC-tran 100.0 2.1E-45 7.1E-50 405.4 22.1 208 480-702 13-237 (355)
35 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-45 4.1E-50 395.8 18.5 206 481-700 21-252 (279)
36 1v43_A Sugar-binding transport 100.0 6.9E-45 2.4E-49 403.8 25.1 207 481-703 11-234 (372)
37 2it1_A 362AA long hypothetical 100.0 2.4E-45 8.4E-50 406.0 21.4 207 481-703 3-226 (362)
38 2onk_A Molybdate/tungstate ABC 100.0 4E-45 1.4E-49 383.6 21.7 202 482-702 2-218 (240)
39 1oxx_K GLCV, glucose, ABC tran 100.0 3.1E-45 1.1E-49 404.5 21.0 208 482-703 4-233 (353)
40 3d31_A Sulfate/molybdate ABC t 100.0 7.1E-45 2.4E-49 400.5 23.2 205 482-703 2-220 (348)
41 2qi9_C Vitamin B12 import ATP- 100.0 1.2E-44 4.2E-49 381.9 23.0 201 481-700 4-222 (249)
42 1g29_1 MALK, maltose transport 100.0 8.2E-45 2.8E-49 403.6 21.1 207 481-703 3-232 (372)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 5.6E-45 1.9E-49 384.6 18.2 201 482-696 4-229 (250)
44 2zu0_C Probable ATP-dependent 100.0 5.9E-44 2E-48 380.4 22.4 206 481-699 20-253 (267)
45 1sgw_A Putative ABC transporte 100.0 9.5E-45 3.3E-49 374.4 14.0 190 480-690 9-204 (214)
46 2nq2_C Hypothetical ABC transp 100.0 9.8E-44 3.4E-48 375.8 20.0 192 481-699 4-216 (253)
47 2pjz_A Hypothetical protein ST 100.0 1.3E-43 4.5E-48 376.8 19.3 201 482-701 2-216 (263)
48 2v9p_A Replication protein E1; 100.0 2.4E-39 8.2E-44 350.2 -16.7 223 409-698 34-264 (305)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 9.4E-35 3.2E-39 337.7 15.5 184 481-692 287-475 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 1.5E-34 5.2E-39 339.7 16.4 184 481-692 357-545 (607)
51 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-34 7.8E-39 334.1 17.6 186 480-692 268-459 (538)
52 3bk7_A ABC transporter ATP-bin 100.0 2.3E-34 8E-39 338.2 12.3 195 481-692 83-301 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-34 1.1E-38 333.1 11.6 194 482-692 21-231 (538)
54 2iw3_A Elongation factor 3A; a 100.0 2.3E-33 7.8E-38 341.2 15.3 191 481-694 671-973 (986)
55 3j16_B RLI1P; ribosome recycli 100.0 1E-32 3.5E-37 323.9 17.8 190 485-700 350-559 (608)
56 3ux8_A Excinuclease ABC, A sub 100.0 2E-32 6.9E-37 326.2 13.8 193 496-702 30-300 (670)
57 2iw3_A Elongation factor 3A; a 100.0 6.3E-31 2.2E-35 319.9 26.4 191 480-701 434-636 (986)
58 3ux8_A Excinuclease ABC, A sub 100.0 4.2E-32 1.4E-36 323.5 12.4 198 496-703 334-643 (670)
59 3j16_B RLI1P; ribosome recycli 100.0 1.2E-31 4.3E-36 314.7 14.3 192 486-692 82-294 (608)
60 3ozx_A RNAse L inhibitor; ATP 100.0 5.3E-32 1.8E-36 314.2 10.2 189 486-692 4-210 (538)
61 3pih_A Uvrabc system protein A 100.0 1.1E-30 3.9E-35 317.2 16.7 197 497-703 597-905 (916)
62 4aby_A DNA repair protein RECN 100.0 2.2E-29 7.5E-34 282.3 12.9 193 498-692 49-368 (415)
63 2vf7_A UVRA2, excinuclease ABC 100.0 1.7E-28 5.8E-33 296.0 16.7 205 480-702 501-829 (842)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 5.8E-32 2E-36 308.2 -12.7 166 480-680 117-299 (460)
65 2r6f_A Excinuclease ABC subuni 100.0 5.2E-28 1.8E-32 292.4 18.2 204 481-703 629-945 (972)
66 1e69_A Chromosome segregation 99.9 1.1E-27 3.7E-32 261.2 13.8 196 481-686 5-289 (322)
67 2ygr_A Uvrabc system protein A 99.9 1.6E-27 5.4E-32 289.1 16.4 204 480-702 646-962 (993)
68 3b85_A Phosphate starvation-in 99.9 1.4E-29 4.8E-34 260.0 -5.8 143 497-684 13-163 (208)
69 4gp7_A Metallophosphoesterase; 99.9 4.8E-27 1.6E-31 233.0 3.1 147 502-686 1-166 (171)
70 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.1E-28 3.8E-33 270.3 -11.2 197 414-686 75-282 (330)
71 1z6g_A Guanylate kinase; struc 99.9 2.2E-28 7.5E-33 252.2 -13.0 151 498-671 11-178 (218)
72 1ye8_A Protein THEP1, hypothet 99.9 5.4E-26 1.9E-30 227.7 1.3 145 512-692 2-160 (178)
73 1tq4_A IIGP1, interferon-induc 99.9 6E-26 2E-30 255.0 -7.6 164 497-685 36-243 (413)
74 2dpy_A FLII, flagellum-specifi 99.9 4.6E-25 1.6E-29 250.1 -3.7 189 480-701 130-345 (438)
75 3aez_A Pantothenate kinase; tr 99.9 8.3E-26 2.9E-30 245.6 -10.9 188 448-682 15-231 (312)
76 3b9q_A Chloroplast SRP recepto 99.9 2E-24 6.7E-29 233.8 -0.5 176 500-697 90-284 (302)
77 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.3E-22 4.5E-27 225.0 12.2 70 617-686 276-352 (365)
78 2eyu_A Twitching motility prot 99.9 3.4E-26 1.2E-30 242.7 -17.4 183 482-680 6-241 (261)
79 2f1r_A Molybdopterin-guanine d 99.9 1.2E-24 4.2E-29 216.7 -7.2 111 511-642 3-125 (171)
80 3sop_A Neuronal-specific septi 99.9 2.5E-24 8.6E-29 229.4 -5.6 148 512-684 4-155 (270)
81 2og2_A Putative signal recogni 99.9 1.5E-23 5.2E-28 231.6 0.4 175 501-697 148-341 (359)
82 2ewv_A Twitching motility prot 99.9 2.1E-25 7.2E-30 248.1 -15.4 174 498-680 126-352 (372)
83 2gza_A Type IV secretion syste 99.8 1E-25 3.5E-30 249.6 -23.0 225 402-634 51-301 (361)
84 1znw_A Guanylate kinase, GMP k 99.8 2.8E-23 9.5E-28 211.7 -8.2 173 496-690 8-199 (207)
85 1lw7_A Transcriptional regulat 99.8 4.8E-22 1.6E-26 220.1 -5.7 148 499-648 157-329 (365)
86 2obl_A ESCN; ATPase, hydrolase 99.8 1.4E-20 4.8E-25 207.3 2.5 190 480-701 44-256 (347)
87 2o5v_A DNA replication and rep 99.8 2.7E-19 9.2E-24 197.8 11.4 76 620-700 265-356 (359)
88 2i3b_A HCR-ntpase, human cance 99.8 5.1E-21 1.7E-25 193.5 -2.3 153 510-693 1-169 (189)
89 2o8b_B DNA mismatch repair pro 99.8 1.9E-19 6.6E-24 222.2 9.8 155 480-686 749-919 (1022)
90 1lvg_A Guanylate kinase, GMP k 99.8 2.5E-22 8.6E-27 203.8 -14.0 160 508-696 2-175 (198)
91 2jeo_A Uridine-cytidine kinase 99.8 1.1E-20 3.8E-25 197.5 -2.9 148 496-680 11-166 (245)
92 3asz_A Uridine kinase; cytidin 99.8 1.1E-21 3.8E-26 199.2 -11.2 144 507-679 3-161 (211)
93 1cr0_A DNA primase/helicase; R 99.7 2.8E-19 9.5E-24 191.6 4.4 165 497-679 22-197 (296)
94 1tf7_A KAIC; homohexamer, hexa 99.7 9.8E-21 3.3E-25 219.5 -7.7 159 490-682 20-188 (525)
95 1pui_A ENGB, probable GTP-bind 99.7 3.7E-20 1.3E-24 186.7 -2.9 169 482-667 4-197 (210)
96 1ewq_A DNA mismatch repair pro 99.7 7.3E-19 2.5E-23 211.1 7.3 147 479-685 548-704 (765)
97 3pih_A Uvrabc system protein A 99.7 1.6E-19 5.5E-24 219.6 -0.0 163 524-702 382-562 (916)
98 1rj9_A FTSY, signal recognitio 99.7 6.1E-19 2.1E-23 191.0 4.3 149 509-681 101-260 (304)
99 1pzn_A RAD51, DNA repair and r 99.7 1.7E-19 5.8E-24 198.9 -0.2 159 498-698 118-313 (349)
100 4ad8_A DNA repair protein RECN 99.7 2.5E-18 8.7E-23 198.8 9.2 68 619-686 395-465 (517)
101 3qkt_A DNA double-strand break 99.7 2.2E-17 7.4E-22 181.1 15.8 73 619-692 247-326 (339)
102 1tf7_A KAIC; homohexamer, hexa 99.7 8.6E-19 3E-23 203.1 4.5 168 482-693 258-441 (525)
103 2qnr_A Septin-2, protein NEDD5 99.7 1.2E-19 4E-24 196.2 -4.2 163 485-681 2-169 (301)
104 1w1w_A Structural maintenance 99.7 2.3E-17 7.8E-22 186.5 13.6 70 620-690 333-407 (430)
105 3szr_A Interferon-induced GTP- 99.7 3.5E-19 1.2E-23 209.8 -3.1 164 481-680 10-197 (608)
106 2qag_C Septin-7; cell cycle, c 99.7 4.3E-19 1.5E-23 199.8 -2.9 166 480-682 10-180 (418)
107 1odf_A YGR205W, hypothetical 3 99.7 6.7E-20 2.3E-24 197.2 -9.5 130 508-655 29-169 (290)
108 2ehv_A Hypothetical protein PH 99.7 1.9E-18 6.6E-23 178.7 -0.0 170 482-682 7-185 (251)
109 4a74_A DNA repair and recombin 99.7 1.3E-17 4.4E-22 170.3 5.6 143 506-690 21-195 (231)
110 3thx_A DNA mismatch repair pro 99.7 1.2E-16 4.1E-21 195.3 14.9 160 480-698 630-811 (934)
111 3jvv_A Twitching mobility prot 99.7 4.4E-17 1.5E-21 180.0 8.4 138 485-686 92-238 (356)
112 2vf7_A UVRA2, excinuclease ABC 99.7 1.3E-17 4.6E-22 201.3 3.8 173 518-701 270-476 (842)
113 3thx_B DNA mismatch repair pro 99.6 6.2E-17 2.1E-21 197.3 6.2 158 480-686 639-803 (918)
114 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 2.5E-16 8.7E-21 153.0 9.2 85 608-693 40-136 (148)
115 2qag_B Septin-6, protein NEDD5 99.6 5.6E-17 1.9E-21 182.4 1.6 180 481-678 16-218 (427)
116 1nij_A Hypothetical protein YJ 99.6 1E-17 3.5E-22 182.3 -5.0 155 510-680 4-190 (318)
117 3c8u_A Fructokinase; YP_612366 99.6 1.9E-19 6.6E-24 183.4 -17.5 138 507-681 19-160 (208)
118 2r6f_A Excinuclease ABC subuni 99.6 1.5E-16 5E-21 192.9 3.4 87 615-701 499-601 (972)
119 1nlf_A Regulatory protein REPA 99.6 8E-16 2.7E-20 163.6 7.9 152 506-683 26-185 (279)
120 1zp6_A Hypothetical protein AT 99.6 7.2E-17 2.5E-21 160.8 -0.9 139 506-666 5-147 (191)
121 2w0m_A SSO2452; RECA, SSPF, un 99.6 4.8E-16 1.7E-20 158.3 4.7 163 496-692 8-189 (235)
122 1s96_A Guanylate kinase, GMP k 99.6 2.3E-16 7.7E-21 163.0 1.9 128 505-684 11-145 (219)
123 2ygr_A Uvrabc system protein A 99.6 4.9E-15 1.7E-19 180.2 13.0 129 568-701 465-618 (993)
124 3kta_B Chromosome segregation 99.6 3.9E-15 1.3E-19 148.4 9.3 69 618-686 62-134 (173)
125 1wb9_A DNA mismatch repair pro 99.6 1.6E-15 5.4E-20 183.2 6.3 153 480-686 576-737 (800)
126 2qm8_A GTPase/ATPase; G protei 99.6 3.9E-17 1.3E-21 179.2 -7.4 178 482-666 30-258 (337)
127 2cvh_A DNA repair and recombin 99.5 1E-14 3.5E-19 147.9 8.8 138 497-680 6-157 (220)
128 2yhs_A FTSY, cell division pro 99.5 1.2E-14 4.2E-19 165.6 7.4 176 500-698 283-477 (503)
129 1htw_A HI0065; nucleotide-bind 99.5 2.7E-16 9.1E-21 154.5 -8.0 89 483-580 9-97 (158)
130 1p9r_A General secretion pathw 99.5 1.4E-16 4.7E-21 179.5 -12.1 142 482-643 144-314 (418)
131 3e70_C DPA, signal recognition 99.5 3.2E-15 1.1E-19 163.4 -1.9 148 506-679 125-279 (328)
132 1sxj_E Activator 1 40 kDa subu 99.4 8.3E-14 2.8E-18 151.9 7.8 134 511-681 37-176 (354)
133 2bbw_A Adenylate kinase 4, AK4 99.4 2.6E-15 9E-20 156.5 -4.4 147 509-667 26-197 (246)
134 2rcn_A Probable GTPase ENGC; Y 99.4 3.4E-14 1.2E-18 156.7 3.5 119 498-636 204-329 (358)
135 2oap_1 GSPE-2, type II secreti 99.4 4.2E-16 1.4E-20 179.9 -13.5 176 497-687 247-458 (511)
136 1n0w_A DNA repair protein RAD5 99.4 1.7E-13 5.9E-18 140.9 5.8 135 506-683 20-178 (243)
137 2x8a_A Nuclear valosin-contain 99.3 3.1E-15 1.1E-19 159.4 -12.5 145 497-664 33-191 (274)
138 2kjq_A DNAA-related protein; s 99.3 1.2E-12 3.9E-17 127.1 6.2 92 498-678 29-124 (149)
139 2yv5_A YJEQ protein; hydrolase 99.3 1.4E-13 4.8E-18 148.6 -0.4 114 506-633 161-300 (302)
140 2bdt_A BH3686; alpha-beta prot 99.3 4.3E-15 1.5E-19 148.2 -11.8 164 510-698 2-182 (189)
141 3ec2_A DNA replication protein 99.3 3.3E-12 1.1E-16 126.3 7.8 110 504-680 32-144 (180)
142 3auy_A DNA double-strand break 99.3 7.9E-12 2.7E-16 138.6 10.0 72 619-691 279-357 (371)
143 3lda_A DNA repair protein RAD5 99.3 2.9E-12 9.9E-17 143.6 5.9 134 506-682 174-331 (400)
144 3lnc_A Guanylate kinase, GMP k 99.2 7.7E-14 2.6E-18 143.9 -7.7 162 497-681 14-197 (231)
145 1cke_A CK, MSSA, protein (cyti 99.2 1.5E-13 5E-18 140.5 -6.4 128 510-649 5-151 (227)
146 1sq5_A Pantothenate kinase; P- 99.2 5.7E-13 2E-17 144.1 -3.7 140 479-653 35-199 (308)
147 1u0l_A Probable GTPase ENGC; p 99.2 3.8E-12 1.3E-16 137.3 1.4 102 505-607 164-289 (301)
148 1ls1_A Signal recognition part 99.2 2.3E-11 7.9E-16 130.9 7.4 142 482-676 77-219 (295)
149 1vma_A Cell division protein F 99.1 5.6E-11 1.9E-15 128.6 9.0 98 503-649 97-197 (306)
150 1udx_A The GTP-binding protein 99.1 7.3E-12 2.5E-16 141.0 0.4 153 500-677 147-306 (416)
151 3tr0_A Guanylate kinase, GMP k 99.1 6.3E-11 2.1E-15 118.8 7.0 72 504-579 1-73 (205)
152 4e22_A Cytidylate kinase; P-lo 99.1 6.9E-12 2.3E-16 131.7 -1.9 108 498-615 18-143 (252)
153 3euj_A Chromosome partition pr 99.1 4.8E-11 1.7E-15 136.3 4.3 64 483-552 8-71 (483)
154 1t9h_A YLOQ, probable GTPase E 99.0 1.7E-11 5.9E-16 132.6 -1.2 96 505-602 168-288 (307)
155 1in4_A RUVB, holliday junction 99.0 1.3E-13 4.4E-18 150.7 -18.2 170 482-683 19-206 (334)
156 3a00_A Guanylate kinase, GMP k 99.0 1.4E-11 4.9E-16 122.9 -3.4 128 510-646 1-169 (186)
157 1iy2_A ATP-dependent metallopr 99.0 5.9E-13 2E-17 141.2 -14.8 137 482-647 50-194 (278)
158 1ixz_A ATP-dependent metallopr 99.0 1.3E-13 4.3E-18 144.1 -20.0 139 482-649 26-172 (254)
159 2px0_A Flagellar biosynthesis 98.9 1.5E-09 5.1E-14 116.9 9.3 125 508-685 103-232 (296)
160 2ius_A DNA translocase FTSK; n 98.9 7.4E-11 2.5E-15 135.6 -1.8 164 502-680 159-343 (512)
161 1oix_A RAS-related protein RAB 98.9 3.3E-11 1.1E-15 120.3 -6.1 134 512-665 31-188 (191)
162 1qhl_A Protein (cell division 98.9 1E-10 3.4E-15 121.4 -3.3 75 481-566 9-91 (227)
163 3ney_A 55 kDa erythrocyte memb 98.8 2.2E-10 7.4E-15 116.3 -1.4 83 504-595 13-108 (197)
164 3k1j_A LON protease, ATP-depen 98.8 1.4E-10 4.7E-15 136.6 -3.6 157 497-665 47-227 (604)
165 1kgd_A CASK, peripheral plasma 98.7 1E-09 3.5E-14 108.9 -0.5 79 509-594 4-93 (180)
166 2zr9_A Protein RECA, recombina 98.7 1.8E-08 6.1E-13 110.9 8.9 122 506-680 57-199 (349)
167 1svm_A Large T antigen; AAA+ f 98.7 1.2E-10 4.1E-15 129.5 -8.8 138 497-649 156-312 (377)
168 2dy1_A Elongation factor G; tr 98.7 3.6E-09 1.2E-13 125.9 3.0 135 504-682 3-139 (665)
169 2qt1_A Nicotinamide riboside k 98.7 2E-09 6.9E-14 108.6 -1.1 108 502-649 13-120 (207)
170 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 3.1E-10 1.1E-14 126.7 -8.8 152 506-686 16-189 (392)
171 2dr3_A UPF0273 protein PH0284; 98.6 3.9E-09 1.3E-13 108.3 0.0 156 497-681 9-175 (247)
172 2r6a_A DNAB helicase, replicat 98.6 2.1E-08 7.1E-13 114.0 5.0 159 497-677 190-362 (454)
173 2f9l_A RAB11B, member RAS onco 98.6 1.2E-08 4E-13 102.0 2.4 135 512-665 7-164 (199)
174 3t34_A Dynamin-related protein 98.5 6.1E-08 2.1E-12 106.7 6.0 162 497-677 24-212 (360)
175 3nwj_A ATSK2; P loop, shikimat 98.5 7.4E-09 2.5E-13 108.8 -1.4 52 481-534 17-72 (250)
176 3uie_A Adenylyl-sulfate kinase 98.5 3.2E-09 1.1E-13 106.9 -4.4 62 485-550 3-66 (200)
177 4eun_A Thermoresistant glucoki 98.5 1.9E-08 6.5E-13 101.2 1.0 70 504-578 23-93 (200)
178 2j41_A Guanylate kinase; GMP, 98.5 3.7E-08 1.3E-12 98.5 2.7 63 505-570 1-63 (207)
179 3kta_A Chromosome segregation 98.5 2E-08 6.9E-13 98.9 0.5 99 501-600 18-136 (182)
180 3cr8_A Sulfate adenylyltranfer 98.4 9E-09 3.1E-13 119.7 -3.2 90 504-598 363-468 (552)
181 2ce7_A Cell division protein F 98.4 1.8E-07 6.2E-12 106.9 7.1 116 497-683 38-168 (476)
182 1zu4_A FTSY; GTPase, signal re 98.4 6.5E-08 2.2E-12 105.2 2.7 71 500-570 95-175 (320)
183 2dhr_A FTSH; AAA+ protein, hex 98.4 5.3E-09 1.8E-13 120.2 -6.7 140 482-650 41-188 (499)
184 3tau_A Guanylate kinase, GMP k 98.4 2E-08 6.9E-13 101.9 -2.3 72 508-583 6-88 (208)
185 3vaa_A Shikimate kinase, SK; s 98.3 1.3E-07 4.6E-12 94.9 2.7 45 490-534 5-49 (199)
186 2qtf_A Protein HFLX, GTP-bindi 98.3 2E-07 6.7E-12 103.2 4.0 137 512-666 181-351 (364)
187 3hr8_A Protein RECA; alpha and 98.3 2E-07 7E-12 102.7 3.1 61 506-569 57-118 (356)
188 2e87_A Hypothetical protein PH 98.3 1.8E-06 6E-11 95.0 9.3 123 511-680 168-293 (357)
189 2ffh_A Protein (FFH); SRP54, s 98.2 2.2E-06 7.4E-11 96.6 10.1 164 482-678 77-247 (425)
190 3ice_A Transcription terminati 98.2 1.5E-07 5.2E-12 104.0 0.5 54 479-534 131-198 (422)
191 2vp4_A Deoxynucleoside kinase; 98.2 4.5E-08 1.5E-12 100.9 -4.1 64 504-571 14-87 (230)
192 2xau_A PRE-mRNA-splicing facto 98.2 2.2E-06 7.4E-11 103.7 8.3 65 620-684 190-257 (773)
193 1knq_A Gluconate kinase; ALFA/ 98.1 6.3E-07 2.2E-11 87.5 1.3 53 508-566 6-59 (175)
194 2z43_A DNA repair and recombin 98.1 1.1E-06 3.9E-11 95.3 3.0 130 506-681 103-260 (324)
195 1jjv_A Dephospho-COA kinase; P 98.0 1.5E-06 5E-11 87.3 2.9 133 512-700 4-139 (206)
196 3kl4_A SRP54, signal recogniti 98.0 4.9E-06 1.7E-10 93.9 6.1 41 509-549 96-136 (433)
197 1rz3_A Hypothetical protein rb 97.9 1.8E-06 6.1E-11 86.9 1.5 48 506-553 18-65 (201)
198 4a1f_A DNAB helicase, replicat 97.9 7.8E-06 2.7E-10 89.4 6.4 125 498-677 34-164 (338)
199 3tqc_A Pantothenate kinase; bi 97.9 6E-07 2.1E-11 97.6 -2.9 47 497-543 73-127 (321)
200 1fnn_A CDC6P, cell division co 97.9 2.6E-05 9E-10 85.0 9.5 49 637-686 124-176 (389)
201 1v5w_A DMC1, meiotic recombina 97.9 7.1E-06 2.4E-10 89.8 4.5 28 506-533 118-145 (343)
202 3b9p_A CG5977-PA, isoform A; A 97.8 5.8E-05 2E-09 79.9 10.6 59 622-680 97-170 (297)
203 1sxj_C Activator 1 40 kDa subu 97.8 4.2E-06 1.5E-10 90.9 0.6 44 497-540 31-76 (340)
204 2eyu_A Twitching motility prot 97.7 2.6E-05 8.8E-10 82.2 6.2 53 628-686 88-140 (261)
205 2pez_A Bifunctional 3'-phospho 97.7 3.1E-06 1.1E-10 83.1 -1.2 41 508-549 3-45 (179)
206 1j8m_F SRP54, signal recogniti 97.7 0.0001 3.6E-09 79.1 9.4 62 483-550 76-138 (297)
207 1ypw_A Transitional endoplasmi 97.6 8.4E-06 2.9E-10 99.0 -0.3 33 504-536 232-264 (806)
208 1f6b_A SAR1; gtpases, N-termin 97.6 1.6E-05 5.4E-10 79.3 1.7 42 488-532 6-47 (198)
209 3m6a_A ATP-dependent protease 97.6 1.1E-05 3.7E-10 93.8 0.6 80 483-566 85-164 (543)
210 3llm_A ATP-dependent RNA helic 97.6 7E-05 2.4E-09 77.0 6.5 128 507-670 73-209 (235)
211 3lxx_A GTPase IMAP family memb 97.6 0.00026 8.7E-09 72.7 10.7 28 512-539 31-58 (239)
212 2z4s_A Chromosomal replication 97.6 5.3E-05 1.8E-09 85.7 6.0 43 637-679 193-237 (440)
213 1lv7_A FTSH; alpha/beta domain 97.6 0.0002 6.8E-09 74.2 9.7 46 499-548 36-81 (257)
214 1mky_A Probable GTP-binding pr 97.5 4.3E-05 1.5E-09 86.3 4.7 70 511-580 181-263 (439)
215 2qby_A CDC6 homolog 1, cell di 97.5 2.4E-05 8.3E-10 84.9 2.5 32 508-539 43-74 (386)
216 1m7g_A Adenylylsulfate kinase; 97.5 1.3E-05 4.5E-10 81.0 -0.0 44 505-548 20-65 (211)
217 2p67_A LAO/AO transport system 97.5 1.4E-05 4.8E-10 87.3 -0.3 54 497-550 43-96 (341)
218 1kag_A SKI, shikimate kinase I 97.5 3.8E-05 1.3E-09 74.4 2.6 33 509-545 3-35 (173)
219 4eaq_A DTMP kinase, thymidylat 97.5 3.9E-05 1.3E-09 79.1 2.7 44 500-544 13-59 (229)
220 3bh0_A DNAB-like replicative h 97.4 5.5E-05 1.9E-09 81.7 3.7 108 497-651 55-164 (315)
221 1ega_A Protein (GTP-binding pr 97.4 0.00014 4.9E-09 77.9 6.7 143 509-683 7-163 (301)
222 3r20_A Cytidylate kinase; stru 97.4 9E-06 3.1E-10 84.5 -2.8 70 510-579 9-96 (233)
223 2qor_A Guanylate kinase; phosp 97.4 3.2E-05 1.1E-09 77.7 0.4 30 506-535 8-37 (204)
224 2www_A Methylmalonic aciduria 97.3 5.7E-05 2E-09 82.9 1.7 43 508-550 72-114 (349)
225 1u94_A RECA protein, recombina 97.2 0.00059 2E-08 75.1 9.0 48 497-545 48-99 (356)
226 1m2o_B GTP-binding protein SAR 97.2 0.00016 5.5E-09 71.3 4.1 34 498-532 12-45 (190)
227 1l8q_A Chromosomal replication 97.2 0.00016 5.6E-09 77.6 4.5 29 509-537 36-64 (324)
228 4fcw_A Chaperone protein CLPB; 97.2 0.00027 9.3E-09 74.9 6.2 32 510-541 47-78 (311)
229 1sxj_D Activator 1 41 kDa subu 97.2 7E-05 2.4E-09 80.7 0.9 43 638-681 133-175 (353)
230 3cf0_A Transitional endoplasmi 97.2 0.00056 1.9E-08 73.0 7.9 32 504-535 43-74 (301)
231 2w58_A DNAI, primosome compone 97.2 0.00031 1.1E-08 69.9 5.4 27 511-537 55-81 (202)
232 3bos_A Putative DNA replicatio 97.2 0.00021 7.1E-09 72.1 4.0 28 509-536 51-78 (242)
233 2jaq_A Deoxyguanosine kinase; 97.1 2.1E-05 7.2E-10 77.9 -3.7 23 512-534 2-24 (205)
234 2gj8_A MNME, tRNA modification 97.1 0.00029 9.8E-09 68.4 4.3 27 508-534 2-28 (172)
235 1njg_A DNA polymerase III subu 97.1 0.0002 7E-09 71.4 2.9 43 637-680 125-167 (250)
236 3h4m_A Proteasome-activating n 97.0 0.0011 3.6E-08 69.5 7.5 28 507-534 48-75 (285)
237 1y63_A LMAJ004144AAA protein; 97.0 0.00032 1.1E-08 69.2 3.2 32 502-533 2-33 (184)
238 2qag_A Septin-2, protein NEDD5 96.9 0.00011 3.8E-09 80.9 -0.5 59 479-546 15-73 (361)
239 3n70_A Transport activator; si 96.9 0.0024 8.2E-08 60.5 8.9 40 638-678 76-115 (145)
240 2yvu_A Probable adenylyl-sulfa 96.9 0.00027 9.3E-09 69.5 2.0 40 506-545 9-49 (186)
241 2i1q_A DNA repair and recombin 96.9 0.00037 1.3E-08 75.0 2.9 27 506-532 94-120 (322)
242 2p5t_B PEZT; postsegregational 96.9 0.00028 9.7E-09 73.4 1.7 43 506-550 28-70 (253)
243 3uk6_A RUVB-like 2; hexameric 96.8 0.0028 9.7E-08 68.7 9.5 43 507-549 67-109 (368)
244 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00068 2.3E-08 65.1 3.8 29 502-531 16-44 (149)
245 3t61_A Gluconokinase; PSI-biol 96.8 0.00031 1.1E-08 70.0 1.3 35 510-548 18-52 (202)
246 2q6t_A DNAB replication FORK h 96.8 0.0011 3.9E-08 74.8 6.0 105 498-650 188-294 (444)
247 4dcu_A GTP-binding protein ENG 96.7 0.0016 5.5E-08 73.7 6.7 58 623-683 87-145 (456)
248 2wji_A Ferrous iron transport 96.7 0.0013 4.6E-08 62.9 5.1 25 511-535 4-28 (165)
249 2wjg_A FEOB, ferrous iron tran 96.6 0.0009 3.1E-08 64.9 3.5 22 512-533 9-30 (188)
250 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00083 2.8E-08 74.9 3.4 41 506-546 18-69 (396)
251 1xp8_A RECA protein, recombina 96.6 0.0046 1.6E-07 68.3 9.3 27 506-532 70-96 (366)
252 1np6_A Molybdopterin-guanine d 96.6 0.00077 2.6E-08 66.7 2.5 39 510-548 6-47 (174)
253 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4E-08 65.7 3.2 21 512-532 3-23 (204)
254 3d8b_A Fidgetin-like protein 1 96.4 0.006 2.1E-07 66.7 8.7 27 508-534 115-141 (357)
255 4ag6_A VIRB4 ATPase, type IV s 96.4 0.0014 4.7E-08 72.6 3.4 48 637-684 261-312 (392)
256 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0082 2.8E-07 61.6 9.1 27 508-534 37-63 (262)
257 2zej_A Dardarin, leucine-rich 96.4 0.0016 5.4E-08 63.6 3.3 26 512-537 4-29 (184)
258 3dm5_A SRP54, signal recogniti 96.4 0.0086 2.9E-07 67.6 9.5 40 509-548 99-138 (443)
259 1uf9_A TT1252 protein; P-loop, 96.3 0.0015 5.2E-08 64.5 2.9 33 510-547 8-40 (203)
260 3lxw_A GTPase IMAP family memb 96.3 0.0057 2E-07 63.3 7.4 59 622-681 86-151 (247)
261 3ihw_A Centg3; RAS, centaurin, 96.3 0.0034 1.1E-07 61.5 5.3 35 512-546 22-65 (184)
262 3cm0_A Adenylate kinase; ATP-b 96.3 0.0016 5.6E-08 63.5 3.0 27 508-534 2-28 (186)
263 1ex7_A Guanylate kinase; subst 96.3 0.0013 4.5E-08 65.7 2.3 64 513-582 4-80 (186)
264 2v1u_A Cell division control p 96.3 0.0019 6.6E-08 69.9 3.5 28 508-535 42-69 (387)
265 1qhx_A CPT, protein (chloramph 96.3 0.0022 7.6E-08 62.0 3.6 27 509-535 2-28 (178)
266 2ga8_A Hypothetical 39.9 kDa p 96.2 0.00075 2.6E-08 74.1 -0.1 37 498-534 10-48 (359)
267 2chg_A Replication factor C sm 96.2 0.0077 2.6E-07 59.2 7.1 43 637-680 101-143 (226)
268 1gtv_A TMK, thymidylate kinase 96.2 0.00068 2.3E-08 67.7 -0.7 89 512-619 2-97 (214)
269 3kb2_A SPBC2 prophage-derived 96.1 0.0024 8.3E-08 61.1 3.0 25 511-535 2-26 (173)
270 3qks_A DNA double-strand break 96.1 0.0031 1.1E-07 63.6 3.8 29 502-531 16-44 (203)
271 3syl_A Protein CBBX; photosynt 96.1 0.026 9E-07 59.4 11.0 26 509-534 66-91 (309)
272 3zvl_A Bifunctional polynucleo 96.1 0.023 7.8E-07 63.6 11.0 35 507-545 255-289 (416)
273 2r62_A Cell division protease 96.0 0.0023 7.7E-08 66.5 2.5 33 500-534 36-68 (268)
274 1kht_A Adenylate kinase; phosp 96.0 0.0032 1.1E-07 61.3 3.4 26 509-534 2-27 (192)
275 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.025 8.7E-07 60.9 10.8 28 507-534 42-69 (322)
276 2v54_A DTMP kinase, thymidylat 96.0 0.0038 1.3E-07 61.7 3.7 26 509-534 3-28 (204)
277 3trf_A Shikimate kinase, SK; a 96.0 0.0035 1.2E-07 61.1 3.4 26 509-534 4-29 (185)
278 1gvn_B Zeta; postsegregational 95.9 0.0042 1.4E-07 66.0 4.2 36 508-545 31-66 (287)
279 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0074 2.5E-07 65.4 6.0 28 505-532 118-145 (331)
280 1vht_A Dephospho-COA kinase; s 95.9 0.0042 1.4E-07 62.5 3.9 32 509-545 3-34 (218)
281 1q3t_A Cytidylate kinase; nucl 95.9 0.0036 1.2E-07 64.1 3.4 28 507-534 13-40 (236)
282 1fzq_A ADP-ribosylation factor 95.9 0.0034 1.1E-07 61.1 3.0 23 511-533 17-39 (181)
283 2rhm_A Putative kinase; P-loop 95.9 0.0034 1.2E-07 61.3 3.0 27 508-534 3-29 (193)
284 3lw7_A Adenylate kinase relate 95.9 0.0037 1.3E-07 59.5 3.1 19 512-530 3-21 (179)
285 1ko7_A HPR kinase/phosphatase; 95.9 0.0034 1.2E-07 67.8 3.0 47 498-545 133-183 (314)
286 1lw7_A Transcriptional regulat 95.8 0.00037 1.3E-08 76.6 -4.7 59 620-678 258-328 (365)
287 3iij_A Coilin-interacting nucl 95.7 0.0033 1.1E-07 61.2 2.0 27 508-534 9-35 (180)
288 2plr_A DTMP kinase, probable t 95.7 0.006 2E-07 60.4 3.8 28 509-536 3-30 (213)
289 2c95_A Adenylate kinase 1; tra 95.7 0.0048 1.7E-07 60.4 3.0 27 508-534 7-33 (196)
290 1jal_A YCHF protein; nucleotid 95.6 0.0076 2.6E-07 66.4 4.8 36 510-545 2-48 (363)
291 2qby_B CDC6 homolog 3, cell di 95.6 0.0061 2.1E-07 66.2 4.0 26 509-534 44-69 (384)
292 1jr3_A DNA polymerase III subu 95.6 0.025 8.4E-07 61.1 8.7 42 638-680 119-160 (373)
293 2wwf_A Thymidilate kinase, put 95.6 0.0054 1.8E-07 61.0 3.2 27 508-534 8-34 (212)
294 2ewv_A Twitching motility prot 95.6 0.012 4.2E-07 64.8 6.2 52 628-685 199-250 (372)
295 3cmw_A Protein RECA, recombina 95.6 0.027 9.2E-07 72.9 10.1 39 507-545 729-768 (1706)
296 3co5_A Putative two-component 95.6 0.018 6.3E-07 54.2 6.5 27 508-534 25-51 (143)
297 1nn5_A Similar to deoxythymidy 95.5 0.0059 2E-07 60.7 3.2 28 507-534 6-33 (215)
298 3bgw_A DNAB-like replicative h 95.5 0.0064 2.2E-07 68.8 3.8 34 499-532 186-219 (444)
299 2bwj_A Adenylate kinase 5; pho 95.4 0.0027 9.2E-08 62.4 0.2 28 507-534 9-36 (199)
300 1tev_A UMP-CMP kinase; ploop, 95.4 0.0074 2.5E-07 58.8 3.4 26 509-534 2-27 (196)
301 1ly1_A Polynucleotide kinase; 95.4 0.0072 2.5E-07 58.2 3.2 31 511-544 3-33 (181)
302 2vli_A Antibiotic resistance p 95.4 0.0062 2.1E-07 59.1 2.7 27 508-534 3-29 (183)
303 1xjc_A MOBB protein homolog; s 95.4 0.0049 1.7E-07 60.7 2.0 36 511-546 5-43 (169)
304 3t15_A Ribulose bisphosphate c 95.4 0.014 4.9E-07 61.9 5.7 26 509-534 35-60 (293)
305 1via_A Shikimate kinase; struc 95.4 0.0068 2.3E-07 58.7 2.8 23 512-534 6-28 (175)
306 2ze6_A Isopentenyl transferase 95.3 0.0072 2.5E-07 62.9 3.1 24 511-534 2-25 (253)
307 3io5_A Recombination and repai 95.2 0.021 7.2E-07 61.8 6.3 38 507-545 26-66 (333)
308 1nks_A Adenylate kinase; therm 95.2 0.0081 2.8E-07 58.4 2.8 24 512-535 3-26 (194)
309 2lkc_A Translation initiation 95.2 0.023 7.8E-07 54.1 5.9 26 508-533 6-31 (178)
310 2b8t_A Thymidine kinase; deoxy 95.2 0.016 5.3E-07 59.6 5.0 38 638-679 89-126 (223)
311 2fn4_A P23, RAS-related protei 95.1 0.017 5.9E-07 54.9 4.9 22 512-533 11-32 (181)
312 1aky_A Adenylate kinase; ATP:A 95.1 0.011 3.6E-07 59.6 3.6 27 508-534 2-28 (220)
313 3cbq_A GTP-binding protein REM 95.1 0.0099 3.4E-07 58.7 3.3 22 512-533 25-46 (195)
314 1hqc_A RUVB; extended AAA-ATPa 95.1 0.058 2E-06 57.1 9.4 26 509-534 37-62 (324)
315 2qp9_X Vacuolar protein sortin 95.1 0.034 1.2E-06 60.7 7.7 27 508-534 82-108 (355)
316 1d2n_A N-ethylmaleimide-sensit 95.1 0.03 1E-06 58.2 6.9 26 508-533 62-87 (272)
317 3pfi_A Holliday junction ATP-d 95.1 0.078 2.7E-06 56.7 10.4 25 511-535 56-80 (338)
318 2erx_A GTP-binding protein DI- 95.0 0.019 6.5E-07 54.0 4.8 21 512-532 5-25 (172)
319 2z0h_A DTMP kinase, thymidylat 95.0 0.011 3.7E-07 57.9 3.2 23 512-534 2-24 (197)
320 1zuh_A Shikimate kinase; alpha 95.0 0.012 4E-07 56.5 3.3 25 510-534 7-31 (168)
321 2cdn_A Adenylate kinase; phosp 95.0 0.012 4.3E-07 58.2 3.5 26 509-534 19-44 (201)
322 3ake_A Cytidylate kinase; CMP 95.0 0.011 3.8E-07 58.4 3.0 23 512-534 4-26 (208)
323 1ukz_A Uridylate kinase; trans 94.9 0.011 3.8E-07 58.5 3.0 26 509-534 14-39 (203)
324 3fb4_A Adenylate kinase; psych 94.9 0.012 4E-07 58.9 3.2 23 512-534 2-24 (216)
325 1zd8_A GTP:AMP phosphotransfer 94.9 0.011 3.9E-07 59.8 3.0 27 508-534 5-31 (227)
326 1e6c_A Shikimate kinase; phosp 94.8 0.012 4.2E-07 56.4 2.9 24 511-534 3-26 (173)
327 2iyv_A Shikimate kinase, SK; t 94.8 0.011 3.7E-07 57.6 2.5 24 511-534 3-26 (184)
328 3u61_B DNA polymerase accessor 94.8 0.034 1.1E-06 59.3 6.5 43 638-681 105-148 (324)
329 2oil_A CATX-8, RAS-related pro 94.8 0.027 9.2E-07 54.8 5.3 22 512-533 27-48 (193)
330 2pt5_A Shikimate kinase, SK; a 94.8 0.014 4.9E-07 55.7 3.2 23 512-534 2-24 (168)
331 1zak_A Adenylate kinase; ATP:A 94.8 0.011 3.8E-07 59.6 2.5 26 509-534 4-29 (222)
332 2pbr_A DTMP kinase, thymidylat 94.8 0.014 4.8E-07 56.8 3.2 23 512-534 2-24 (195)
333 1qf9_A UMP/CMP kinase, protein 94.8 0.013 4.5E-07 56.8 2.9 25 510-534 6-30 (194)
334 3dl0_A Adenylate kinase; phosp 94.8 0.012 4.3E-07 58.8 2.8 23 512-534 2-24 (216)
335 1a7j_A Phosphoribulokinase; tr 94.7 0.0099 3.4E-07 63.3 2.0 26 509-534 4-29 (290)
336 1z0j_A RAB-22, RAS-related pro 94.7 0.021 7.2E-07 53.7 4.1 23 512-534 8-30 (170)
337 3vfd_A Spastin; ATPase, microt 94.7 0.07 2.4E-06 58.7 8.9 27 508-534 146-172 (389)
338 1ksh_A ARF-like protein 2; sma 94.7 0.031 1.1E-06 53.8 5.4 24 509-532 17-40 (186)
339 2dby_A GTP-binding protein; GD 94.7 0.014 4.8E-07 64.4 3.2 22 512-533 3-24 (368)
340 2ew1_A RAS-related protein RAB 94.6 0.026 9E-07 56.1 4.9 21 512-532 28-48 (201)
341 1z2a_A RAS-related protein RAB 94.6 0.016 5.4E-07 54.5 3.0 22 512-533 7-28 (168)
342 3tlx_A Adenylate kinase 2; str 94.6 0.017 5.9E-07 59.5 3.5 26 509-534 28-53 (243)
343 2grj_A Dephospho-COA kinase; T 94.6 0.016 5.5E-07 57.9 3.2 24 511-534 13-36 (192)
344 3cmu_A Protein RECA, recombina 94.6 0.091 3.1E-06 69.0 10.8 39 507-545 380-419 (2050)
345 2zan_A Vacuolar protein sortin 94.5 0.087 3E-06 59.3 9.4 27 508-534 165-191 (444)
346 2nzj_A GTP-binding protein REM 94.5 0.018 6.3E-07 54.5 3.3 23 512-534 6-28 (175)
347 3clv_A RAB5 protein, putative; 94.5 0.023 7.7E-07 55.0 3.9 22 512-533 9-30 (208)
348 3q72_A GTP-binding protein RAD 94.5 0.015 5.2E-07 54.7 2.6 23 512-534 4-26 (166)
349 2ged_A SR-beta, signal recogni 94.5 0.017 5.9E-07 56.1 3.1 24 511-534 49-72 (193)
350 1uj2_A Uridine-cytidine kinase 94.5 0.017 5.8E-07 59.7 3.2 24 511-534 23-46 (252)
351 1kao_A RAP2A; GTP-binding prot 94.5 0.018 6.1E-07 53.8 3.1 21 512-532 5-25 (167)
352 3k53_A Ferrous iron transport 94.5 0.016 5.3E-07 60.7 2.8 24 512-535 5-28 (271)
353 1r2q_A RAS-related protein RAB 94.4 0.026 8.9E-07 53.0 4.1 21 512-532 8-28 (170)
354 1sxj_B Activator 1 37 kDa subu 94.4 0.047 1.6E-06 57.4 6.5 42 638-680 107-148 (323)
355 3q85_A GTP-binding protein REM 94.4 0.02 6.9E-07 54.0 3.2 23 512-534 4-26 (169)
356 1u8z_A RAS-related protein RAL 94.4 0.019 6.5E-07 53.7 3.0 21 512-532 6-26 (168)
357 2dyk_A GTP-binding protein; GT 94.4 0.02 6.7E-07 53.5 3.1 23 512-534 3-25 (161)
358 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.021 7E-07 59.5 3.5 27 508-534 2-28 (260)
359 3eie_A Vacuolar protein sortin 94.4 0.039 1.3E-06 59.1 5.8 27 508-534 49-75 (322)
360 3iby_A Ferrous iron transport 94.4 0.019 6.4E-07 59.9 3.2 23 512-534 3-25 (256)
361 2ce2_X GTPase HRAS; signaling 94.4 0.017 5.9E-07 53.8 2.6 22 512-533 5-26 (166)
362 1ypw_A Transitional endoplasmi 94.3 0.003 1E-07 76.7 -3.4 47 502-550 503-549 (806)
363 4b4t_L 26S protease subunit RP 94.3 0.091 3.1E-06 59.2 8.8 29 506-534 211-239 (437)
364 2bcg_Y Protein YP2, GTP-bindin 94.3 0.035 1.2E-06 54.6 4.8 22 512-533 10-31 (206)
365 1ky3_A GTP-binding protein YPT 94.3 0.021 7.1E-07 54.4 3.1 22 512-533 10-31 (182)
366 1c1y_A RAS-related protein RAP 94.3 0.021 7.1E-07 53.6 3.0 21 512-532 5-25 (167)
367 1z08_A RAS-related protein RAB 94.3 0.021 7.3E-07 53.8 3.1 22 512-533 8-29 (170)
368 3t1o_A Gliding protein MGLA; G 94.3 0.021 7.1E-07 55.2 3.0 25 512-536 16-40 (198)
369 1ek0_A Protein (GTP-binding pr 94.2 0.022 7.4E-07 53.5 3.0 22 512-533 5-26 (170)
370 3tw8_B RAS-related protein RAB 94.2 0.022 7.5E-07 54.2 3.0 22 512-533 11-32 (181)
371 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.022 7.6E-07 54.2 3.1 22 512-533 9-30 (177)
372 1m7b_A RND3/RHOE small GTP-bin 94.2 0.026 8.9E-07 54.6 3.6 22 512-533 9-30 (184)
373 1g16_A RAS-related protein SEC 94.2 0.02 6.7E-07 53.9 2.6 22 512-533 5-26 (170)
374 3a8t_A Adenylate isopentenyltr 94.2 0.027 9.2E-07 61.4 3.9 28 508-535 38-65 (339)
375 3hu3_A Transitional endoplasmi 94.1 0.065 2.2E-06 61.3 7.2 28 507-534 235-262 (489)
376 2f6r_A COA synthase, bifunctio 94.1 0.022 7.4E-07 60.2 3.0 23 510-532 75-97 (281)
377 1svi_A GTP-binding protein YSX 94.1 0.021 7.2E-07 55.4 2.6 23 511-533 24-46 (195)
378 3pqc_A Probable GTP-binding pr 94.1 0.021 7.3E-07 55.1 2.6 23 512-534 25-47 (195)
379 3be4_A Adenylate kinase; malar 94.1 0.022 7.6E-07 57.4 2.8 26 509-534 4-29 (217)
380 4dsu_A GTPase KRAS, isoform 2B 94.0 0.026 8.9E-07 54.2 3.1 22 512-533 6-27 (189)
381 3bc1_A RAS-related protein RAB 94.0 0.026 8.8E-07 54.3 3.0 21 512-532 13-33 (195)
382 3t5d_A Septin-7; GTP-binding p 94.0 0.022 7.5E-07 59.6 2.7 22 512-533 10-31 (274)
383 3auy_A DNA double-strand break 94.0 0.031 1.1E-06 61.4 4.0 31 500-531 16-46 (371)
384 3b1v_A Ferrous iron uptake tra 93.9 0.027 9.1E-07 59.4 3.3 23 512-534 5-27 (272)
385 4b4t_M 26S protease regulatory 93.9 0.09 3.1E-06 59.2 7.7 29 506-534 211-239 (434)
386 2h92_A Cytidylate kinase; ross 93.9 0.022 7.6E-07 57.0 2.4 25 510-534 3-27 (219)
387 2hxs_A RAB-26, RAS-related pro 93.9 0.031 1E-06 53.2 3.3 22 512-533 8-29 (178)
388 1qvr_A CLPB protein; coiled co 93.8 0.07 2.4E-06 65.1 7.2 35 511-545 589-624 (854)
389 1r8s_A ADP-ribosylation factor 93.8 0.029 9.9E-07 52.6 3.0 21 512-532 2-22 (164)
390 2cxx_A Probable GTP-binding pr 93.8 0.025 8.6E-07 54.4 2.6 22 512-533 3-24 (190)
391 1ojl_A Transcriptional regulat 93.8 0.093 3.2E-06 56.0 7.3 28 508-535 23-50 (304)
392 1upt_A ARL1, ADP-ribosylation 93.8 0.029 1E-06 52.8 3.0 22 511-532 8-29 (171)
393 3cmw_A Protein RECA, recombina 93.8 0.14 4.9E-06 66.3 10.1 35 498-533 369-406 (1706)
394 3cmu_A Protein RECA, recombina 93.8 0.097 3.3E-06 68.7 8.6 37 496-532 1065-1103(2050)
395 4bas_A ADP-ribosylation factor 93.8 0.039 1.3E-06 53.6 3.9 22 511-532 18-39 (199)
396 3t5g_A GTP-binding protein RHE 93.8 0.045 1.5E-06 52.4 4.3 20 512-531 8-27 (181)
397 2g6b_A RAS-related protein RAB 93.8 0.03 1E-06 53.4 3.0 22 512-533 12-33 (180)
398 1e4v_A Adenylate kinase; trans 93.7 0.028 9.4E-07 56.4 2.8 23 512-534 2-24 (214)
399 2y8e_A RAB-protein 6, GH09086P 93.7 0.028 9.5E-07 53.4 2.6 21 512-532 16-36 (179)
400 2xb4_A Adenylate kinase; ATP-b 93.7 0.032 1.1E-06 56.6 3.2 23 512-534 2-24 (223)
401 1ak2_A Adenylate kinase isoenz 93.7 0.036 1.2E-06 56.4 3.6 26 509-534 15-40 (233)
402 1z0f_A RAB14, member RAS oncog 93.7 0.032 1.1E-06 52.9 3.0 22 512-533 17-38 (179)
403 2efe_B Small GTP-binding prote 93.6 0.033 1.1E-06 53.2 3.1 22 512-533 14-35 (181)
404 2fv8_A H6, RHO-related GTP-bin 93.6 0.016 5.5E-07 57.4 0.8 33 501-533 16-48 (207)
405 1jbk_A CLPB protein; beta barr 93.6 0.036 1.2E-06 52.9 3.3 28 508-535 41-68 (195)
406 2gf0_A GTP-binding protein DI- 93.6 0.046 1.6E-06 53.1 4.1 21 512-532 10-30 (199)
407 2a9k_A RAS-related protein RAL 93.6 0.033 1.1E-06 53.3 3.0 21 512-532 20-40 (187)
408 2qmh_A HPR kinase/phosphorylas 93.6 0.051 1.7E-06 55.0 4.4 36 498-534 23-58 (205)
409 2fg5_A RAB-22B, RAS-related pr 93.6 0.041 1.4E-06 53.6 3.7 21 512-532 25-45 (192)
410 3con_A GTPase NRAS; structural 93.6 0.033 1.1E-06 53.9 3.0 22 512-533 23-44 (190)
411 4b4t_K 26S protease regulatory 93.6 0.088 3E-06 59.2 6.8 29 506-534 202-230 (428)
412 1sky_E F1-ATPase, F1-ATP synth 93.5 0.017 5.9E-07 65.6 0.9 44 498-542 140-183 (473)
413 3v9p_A DTMP kinase, thymidylat 93.5 0.035 1.2E-06 57.1 3.0 28 508-535 23-50 (227)
414 1moz_A ARL1, ADP-ribosylation 93.4 0.024 8.1E-07 54.4 1.6 23 510-532 18-40 (183)
415 1gwn_A RHO-related GTP-binding 93.4 0.05 1.7E-06 54.2 4.1 22 512-533 30-51 (205)
416 1a5t_A Delta prime, HOLB; zinc 93.4 0.23 7.8E-06 53.5 9.6 42 638-680 108-149 (334)
417 2g3y_A GTP-binding protein GEM 93.4 0.069 2.4E-06 53.9 5.1 23 512-534 39-61 (211)
418 1vg8_A RAS-related protein RAB 93.4 0.037 1.3E-06 54.2 3.1 22 512-533 10-31 (207)
419 2bov_A RAla, RAS-related prote 93.4 0.037 1.3E-06 54.1 3.0 22 512-533 16-37 (206)
420 2xtp_A GTPase IMAP family memb 93.4 0.034 1.2E-06 57.3 2.9 23 511-533 23-45 (260)
421 4edh_A DTMP kinase, thymidylat 93.4 0.042 1.4E-06 55.8 3.5 29 508-536 4-32 (213)
422 3kkq_A RAS-related protein M-R 93.4 0.038 1.3E-06 53.0 3.0 21 512-532 20-40 (183)
423 3d3q_A TRNA delta(2)-isopenten 93.3 0.034 1.2E-06 60.7 2.9 25 511-535 8-32 (340)
424 2gf9_A RAS-related protein RAB 93.3 0.038 1.3E-06 53.6 3.0 22 512-533 24-45 (189)
425 3reg_A RHO-like small GTPase; 93.3 0.06 2.1E-06 52.4 4.4 22 512-533 25-46 (194)
426 2bme_A RAB4A, RAS-related prot 93.3 0.035 1.2E-06 53.3 2.6 22 512-533 12-33 (186)
427 1zd9_A ADP-ribosylation factor 93.3 0.052 1.8E-06 52.7 3.9 21 512-532 24-44 (188)
428 1nrj_B SR-beta, signal recogni 93.3 0.038 1.3E-06 54.8 3.0 23 512-534 14-36 (218)
429 3tkl_A RAS-related protein RAB 93.3 0.04 1.4E-06 53.4 3.0 22 512-533 18-39 (196)
430 1wf3_A GTP-binding protein; GT 93.3 0.039 1.3E-06 59.0 3.2 22 512-533 9-30 (301)
431 3tmk_A Thymidylate kinase; pho 93.3 0.042 1.4E-06 56.1 3.3 29 508-536 3-31 (216)
432 3umf_A Adenylate kinase; rossm 93.2 0.038 1.3E-06 56.4 2.9 29 506-534 25-53 (217)
433 4b4t_J 26S protease regulatory 93.2 0.14 4.9E-06 57.0 7.8 28 507-534 179-206 (405)
434 1mh1_A RAC1; GTP-binding, GTPa 93.2 0.041 1.4E-06 52.6 3.0 21 512-532 7-27 (186)
435 3exa_A TRNA delta(2)-isopenten 93.2 0.047 1.6E-06 59.0 3.7 25 510-534 3-27 (322)
436 1zbd_A Rabphilin-3A; G protein 93.2 0.044 1.5E-06 53.7 3.2 22 512-533 10-31 (203)
437 1z06_A RAS-related protein RAB 93.2 0.043 1.5E-06 53.2 3.1 21 512-532 22-42 (189)
438 3pxi_A Negative regulator of g 93.2 0.13 4.5E-06 61.7 7.9 23 512-534 523-545 (758)
439 1ltq_A Polynucleotide kinase; 93.1 0.043 1.5E-06 57.8 3.2 31 511-544 3-33 (301)
440 4dhe_A Probable GTP-binding pr 93.1 0.024 8.1E-07 56.5 1.1 23 511-533 30-52 (223)
441 2cjw_A GTP-binding protein GEM 93.1 0.043 1.5E-06 53.9 3.0 22 512-533 8-29 (192)
442 3iev_A GTP-binding protein ERA 93.1 0.044 1.5E-06 58.6 3.2 23 511-533 11-33 (308)
443 2qu8_A Putative nucleolar GTP- 93.1 0.045 1.5E-06 55.1 3.1 22 511-532 30-51 (228)
444 1p5z_B DCK, deoxycytidine kina 93.0 0.033 1.1E-06 57.8 2.1 28 508-535 22-49 (263)
445 1iqp_A RFCS; clamp loader, ext 93.0 0.092 3.2E-06 55.3 5.6 42 638-680 110-151 (327)
446 2il1_A RAB12; G-protein, GDP, 93.0 0.045 1.5E-06 53.4 3.0 21 512-532 28-48 (192)
447 2a5j_A RAS-related protein RAB 93.0 0.047 1.6E-06 53.1 3.0 22 512-533 23-44 (191)
448 3oes_A GTPase rhebl1; small GT 92.9 0.042 1.4E-06 54.0 2.6 23 511-533 25-47 (201)
449 2ocp_A DGK, deoxyguanosine kin 92.9 0.048 1.6E-06 55.7 3.1 27 509-535 1-27 (241)
450 3lv8_A DTMP kinase, thymidylat 92.9 0.048 1.7E-06 56.4 3.1 28 509-536 26-53 (236)
451 3dz8_A RAS-related protein RAB 92.9 0.043 1.5E-06 53.3 2.6 22 512-533 25-46 (191)
452 3ld9_A DTMP kinase, thymidylat 92.9 0.055 1.9E-06 55.5 3.5 28 508-535 19-46 (223)
453 2j37_W Signal recognition part 92.9 0.11 3.6E-06 59.8 6.2 26 510-535 101-126 (504)
454 3llu_A RAS-related GTP-binding 92.9 0.047 1.6E-06 53.5 2.8 25 512-536 22-46 (196)
455 3bwd_D RAC-like GTP-binding pr 92.9 0.057 1.9E-06 51.5 3.4 22 511-532 9-30 (182)
456 1x3s_A RAS-related protein RAB 92.8 0.05 1.7E-06 52.5 3.0 22 512-533 17-38 (195)
457 3cph_A RAS-related protein SEC 92.8 0.05 1.7E-06 53.5 3.0 22 511-532 21-42 (213)
458 2xxa_A Signal recognition part 92.8 0.21 7.2E-06 56.1 8.5 40 509-548 99-139 (433)
459 3a1s_A Iron(II) transport prot 92.8 0.052 1.8E-06 56.6 3.3 23 512-534 7-29 (258)
460 2atv_A RERG, RAS-like estrogen 92.8 0.052 1.8E-06 53.0 3.1 23 511-533 29-51 (196)
461 2wsm_A Hydrogenase expression/ 92.8 0.046 1.6E-06 54.5 2.7 24 511-534 31-54 (221)
462 4tmk_A Protein (thymidylate ki 92.8 0.053 1.8E-06 55.1 3.2 27 509-535 2-28 (213)
463 3i8s_A Ferrous iron transport 92.8 0.047 1.6E-06 57.3 2.9 23 512-534 5-27 (274)
464 1zj6_A ADP-ribosylation factor 92.8 0.05 1.7E-06 52.6 2.8 23 510-532 16-38 (187)
465 2o52_A RAS-related protein RAB 92.7 0.049 1.7E-06 53.6 2.8 21 512-532 27-47 (200)
466 2h57_A ADP-ribosylation factor 92.7 0.041 1.4E-06 53.4 2.2 24 511-534 22-45 (190)
467 2p5s_A RAS and EF-hand domain 92.7 0.053 1.8E-06 53.2 3.0 24 510-533 28-51 (199)
468 2p65_A Hypothetical protein PF 92.7 0.045 1.5E-06 52.3 2.4 29 508-536 41-69 (187)
469 1q57_A DNA primase/helicase; d 92.7 0.27 9.2E-06 56.0 9.2 35 500-534 232-266 (503)
470 2f7s_A C25KG, RAS-related prot 92.6 0.059 2E-06 53.4 3.3 22 512-533 27-48 (217)
471 2iwr_A Centaurin gamma 1; ANK 92.6 0.043 1.5E-06 52.3 2.2 21 512-532 9-29 (178)
472 3crm_A TRNA delta(2)-isopenten 92.6 0.052 1.8E-06 58.8 3.0 25 511-535 6-30 (323)
473 2h17_A ADP-ribosylation factor 92.6 0.047 1.6E-06 52.6 2.4 21 512-532 23-43 (181)
474 2q3h_A RAS homolog gene family 92.6 0.06 2.1E-06 52.6 3.2 22 511-532 21-42 (201)
475 2fu5_C RAS-related protein RAB 92.5 0.042 1.4E-06 52.7 1.9 21 512-532 10-30 (183)
476 2chq_A Replication factor C sm 92.5 0.064 2.2E-06 56.3 3.4 23 512-534 40-62 (319)
477 3c5c_A RAS-like protein 12; GD 92.5 0.061 2.1E-06 52.3 3.1 21 512-532 23-43 (187)
478 2j1l_A RHO-related GTP-binding 92.4 0.057 2E-06 53.8 2.9 21 512-532 36-56 (214)
479 3cnl_A YLQF, putative uncharac 92.4 0.061 2.1E-06 56.3 3.2 30 511-540 100-129 (262)
480 3euj_A Chromosome partition pr 92.4 0.2 6.8E-06 57.1 7.6 64 612-678 371-451 (483)
481 1jwy_B Dynamin A GTPase domain 92.4 0.055 1.9E-06 57.3 2.8 23 512-534 26-48 (315)
482 2v3c_C SRP54, signal recogniti 92.4 0.024 8.3E-07 63.8 0.0 39 511-549 100-138 (432)
483 2fh5_B SR-beta, signal recogni 92.4 0.081 2.8E-06 52.3 3.9 23 511-533 8-30 (214)
484 3def_A T7I23.11 protein; chlor 92.3 0.059 2E-06 56.0 2.9 22 512-533 38-59 (262)
485 1h65_A Chloroplast outer envel 92.3 0.058 2E-06 56.2 2.8 22 512-533 41-62 (270)
486 3q3j_B RHO-related GTP-binding 92.3 0.086 2.9E-06 52.6 3.9 23 511-533 28-50 (214)
487 3foz_A TRNA delta(2)-isopenten 92.2 0.075 2.6E-06 57.3 3.5 25 510-534 10-34 (316)
488 2gco_A H9, RHO-related GTP-bin 92.2 0.06 2.1E-06 52.9 2.6 22 512-533 27-48 (201)
489 2b6h_A ADP-ribosylation factor 92.1 0.061 2.1E-06 52.6 2.6 24 509-532 28-51 (192)
490 2zts_A Putative uncharacterize 92.1 0.088 3E-06 53.2 3.8 24 507-530 27-50 (251)
491 4gzl_A RAS-related C3 botulinu 92.0 0.1 3.5E-06 51.5 4.1 22 511-532 31-52 (204)
492 2atx_A Small GTP binding prote 92.0 0.067 2.3E-06 51.9 2.7 22 512-533 20-41 (194)
493 4b4t_I 26S protease regulatory 92.0 0.29 1E-05 54.9 8.1 29 506-534 212-240 (437)
494 2aka_B Dynamin-1; fusion prote 92.0 0.063 2.1E-06 56.2 2.6 23 512-534 28-50 (299)
495 3l0o_A Transcription terminati 91.9 0.036 1.2E-06 61.4 0.7 51 482-534 138-199 (427)
496 2hf9_A Probable hydrogenase ni 91.9 0.067 2.3E-06 53.5 2.6 24 511-534 39-62 (226)
497 4b4t_H 26S protease regulatory 91.9 0.24 8.3E-06 56.1 7.3 29 506-534 239-267 (467)
498 3tqf_A HPR(Ser) kinase; transf 91.8 0.1 3.6E-06 51.6 3.8 34 498-532 5-38 (181)
499 4djt_A GTP-binding nuclear pro 91.8 0.04 1.4E-06 54.7 0.8 21 512-532 13-33 (218)
500 2yc2_C IFT27, small RAB-relate 91.6 0.044 1.5E-06 53.5 0.9 22 512-533 22-43 (208)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.1e-95 Score=918.67 Aligned_cols=505 Identities=26% Similarity=0.392 Sum_probs=453.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHH
Q psy4347 182 ILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIV 261 (816)
Q Consensus 182 ~i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii 261 (816)
++.++++.++..++.+++.+++..+++++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++
T Consensus 139 ~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~ 218 (1321)
T 4f4c_A 139 VWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAF 218 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556677889999999999999999999999999999999999999999999999999999887766666666
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHH
Q psy4347 262 PTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFE 341 (816)
Q Consensus 262 ~~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~ 341 (816)
..++.++. +++++++++|++++++++++|+++++..++.++..+..++.++..++.++.+.|.++|+++||+||.|+.+
T Consensus 219 ~~~~~~i~-~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 219 QYLSQFIT-GFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHH-HHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 66554433 35566789999999999999999988888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q psy4347 342 ADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLV 421 (816)
Q Consensus 342 ~~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lv 421 (816)
.++|.+..+++.+..++. ....++......++..+..++++++|++++.+|.+|+|+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~ 356 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLK---------------------GLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDML 356 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 999999999988877766 33344444555566667778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccce
Q psy4347 422 MVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFS 501 (816)
Q Consensus 422 af~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~ 501 (816)
+++.++..+..|+..++..+..++++.++++|++++++.+|++++....... ..+..++|+|+||+|+||+++++++|+
T Consensus 357 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~-~~~~~g~I~~~nvsF~Y~~~~~~~vL~ 435 (1321)
T 4f4c_A 357 TTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRK-DMKIKGDITVENVHFTYPSRPDVPILR 435 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCC-CCCCCCCEEEEEEEECCSSSTTSCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc-CCCCCCcEEEEEeeeeCCCCCCCceee
Confidence 9999999999999999999999999999999999999998876443322211 123467899999999998766789999
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcC
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG 581 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~ 581 (816)
||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||+|||+||++||+|||+||
T Consensus 436 ~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g 515 (1321)
T 4f4c_A 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG 515 (1321)
T ss_dssp EEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTT
T ss_pred ceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4347 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661 (816)
Q Consensus 582 ~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~ 661 (816)
+|+++++++++||+.|++++||++||+||||.|||+|.+||||||||||||||+++||+||||||||||||+++|+.|++
T Consensus 516 ~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~ 595 (1321)
T 4f4c_A 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595 (1321)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhc
Q psy4347 662 SLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSM 709 (816)
Q Consensus 662 ~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~ 709 (816)
+|+++.+++|+|+||||++++++|| |+|+|+|+|+||++.++.|++..
T Consensus 596 ~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~ 650 (1321)
T 4f4c_A 596 ALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLV 650 (1321)
T ss_dssp HHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHH
T ss_pred HHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999 99999999999999987554433
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.8e-88 Score=792.14 Aligned_cols=493 Identities=23% Similarity=0.380 Sum_probs=438.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy4347 187 IARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFE 266 (816)
Q Consensus 187 i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~ 266 (816)
++.++..++.+++.++..+.+.++..++|.++|+|++++|+.||+++++|++++|+++|++.++.++...+..++..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~ 150 (587)
T 3qf4_A 71 IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLL 150 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566778888999999999999999999999999999999999999999999999999988877665555554443
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHH
Q psy4347 267 LALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYE 346 (816)
Q Consensus 267 ~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~ 346 (816)
++ +++++++.++|.+++++++++|+++++..++.++..+..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.
T Consensus 151 ~i-~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~ 229 (587)
T 3qf4_A 151 FV-GGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFR 229 (587)
T ss_dssp HH-HHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 32 23445677899999999999999888888888777777777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4347 347 GVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGL 426 (816)
Q Consensus 347 ~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~ 426 (816)
+..+++.+...+. ............++..++.++++++|++++..|.+|+|.++++..|
T Consensus 230 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~ 288 (587)
T 3qf4_A 230 KANESLRRSIISA---------------------FSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNY 288 (587)
T ss_dssp HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 9999988877765 3333344444556666777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEE
Q psy4347 427 LFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFT 506 (816)
Q Consensus 427 ~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~ 506 (816)
..++..|+..++..+..++++.++++|++++++.+++..+.....+ .++..+.|+++||+|+|++ .++++|+|+||+
T Consensus 289 ~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~--~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~ 365 (587)
T 3qf4_A 289 LMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALA--LPNVEGSVSFENVEFRYFE-NTDPVLSGVNFS 365 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBC--CSCCCCCEEEEEEEECSSS-SSCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccc--cCCCCCcEEEEEEEEEcCC-CCCcceeceEEE
Confidence 9999999999999999999999999999999998776533221111 1123578999999999975 357899999999
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKS 586 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~ 586 (816)
|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|.+|++||+|||.++.+..+
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~ 445 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDAT 445 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4347 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA 666 (816)
Q Consensus 587 ~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~ 666 (816)
++++.++++.+++++++.++|+||||.+||+|.+||||||||++|||||+++|+|||||||||+||+++|+.|++.|+++
T Consensus 446 ~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 446 DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp HHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCch
Q psy4347 667 SRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 667 ~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~ 704 (816)
.+++|+|+||||++++..|| |+|++.|+|+||++.++.
T Consensus 526 ~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 570 (587)
T 3qf4_A 526 TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKP 570 (587)
T ss_dssp STTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHH
T ss_pred CCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 88999999999999999998 999999999999987653
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.2e-88 Score=793.84 Aligned_cols=497 Identities=31% Similarity=0.424 Sum_probs=441.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHH
Q psy4347 183 LGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVP 262 (816)
Q Consensus 183 i~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~ 262 (816)
+++.++.++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++++|+++|++.++.++...+..++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~ 144 (578)
T 4a82_A 65 IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWL 144 (578)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455667788999999999999999999999999999999999999999999999999998888776554444444
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHH
Q psy4347 263 TIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEA 342 (816)
Q Consensus 263 ~v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~ 342 (816)
.++.+++ ++++++.++|.+++++++++|+++++..++.++..+..++.++..++.++.+.|.++|+++||+||.|+.+.
T Consensus 145 ~~~~~i~-~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 223 (578)
T 4a82_A 145 DCITIII-ALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEA 223 (578)
T ss_dssp HHHHHHH-HHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHH
Confidence 4443322 344567789999999999999988888888887777777788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q psy4347 343 DRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVM 422 (816)
Q Consensus 343 ~r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lva 422 (816)
++|++..+++.+...+. .+..+.......++..++.++++++|++++..|.+|+|.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~ 282 (578)
T 4a82_A 224 KNFDKKNTNFLTRALKH---------------------TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAA 282 (578)
T ss_dssp HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 99999999988887776 344444455556666677788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCccccccee
Q psy4347 423 VNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSN 502 (816)
Q Consensus 423 f~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~ 502 (816)
+..|...+..|+..++..+..++++.++++|++++++.+++..+.....+. ....+.|+++||+|+|++ .++++|+|
T Consensus 283 ~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~y~~-~~~~~l~~ 359 (578)
T 4a82_A 283 FVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPI--EIKQGRIDIDHVSFQYND-NEAPILKD 359 (578)
T ss_dssp HHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCC--CCCSCCEEEEEEEECSCS-SSCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccc--CCCCCeEEEEEEEEEcCC-CCCcceee
Confidence 999999999999999999999999999999999999988765432221111 123578999999999975 34689999
Q ss_pred eeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC
Q psy4347 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD 582 (816)
Q Consensus 503 isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~ 582 (816)
+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|.+|++||+|||.+|.
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 439 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 439 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4347 583 KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662 (816)
Q Consensus 583 ~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~ 662 (816)
+..+++++.++++.+++++++.++|+||||.+||+|.+||||||||++|||||+++|++||||||||+||+++++.+.+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~ 519 (578)
T 4a82_A 440 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519 (578)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCch
Q psy4347 663 LKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 663 l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~ 704 (816)
|+++.+++|+|+||||+++++.|| |+|++.|+|+||++.++.
T Consensus 520 l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~ 568 (578)
T 4a82_A 520 LDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568 (578)
T ss_dssp HHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSH
T ss_pred HHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 999888999999999999999999 999999999999988763
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-88 Score=796.51 Aligned_cols=493 Identities=27% Similarity=0.399 Sum_probs=440.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4347 186 GIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIF 265 (816)
Q Consensus 186 ~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~ 265 (816)
+++.++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~ 163 (598)
T 3qf4_B 84 GTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIV 163 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788899999999999999999999999999999999999999999999999999998887766666666555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHH
Q psy4347 266 ELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRY 345 (816)
Q Consensus 266 ~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~ 345 (816)
.+++ ++++++.++|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|
T Consensus 164 ~~i~-~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 242 (598)
T 3qf4_B 164 TLAG-AVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKF 242 (598)
T ss_dssp HHHH-HHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHH
Confidence 4433 344567789999999999999988888888877777777777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy4347 346 EGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNG 425 (816)
Q Consensus 346 ~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~ 425 (816)
.+..+++.+...+. ....+.......++..++.++++++|++++..|.+|+|.+++++.
T Consensus 243 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~ 301 (598)
T 3qf4_B 243 DRVNESLRKVGTKA---------------------QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIG 301 (598)
T ss_dssp HHHHHHHHHHHHHH---------------------HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999888877765 233333444455566677778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeE
Q psy4347 426 LLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNF 505 (816)
Q Consensus 426 ~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl 505 (816)
|...+..|+..++..+..++++.++++|+.++++.+++..+.. ..+ ..+..+.|+++||+|+|++ ++++|+|+||
T Consensus 302 ~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~--~~~~~~~i~~~~v~~~y~~--~~~~l~~isl 376 (598)
T 3qf4_B 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD-AVE--LREVRGEIEFKNVWFSYDK--KKPVLKDITF 376 (598)
T ss_dssp TTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS-CCC--CCSCCCCEEEEEEECCSSS--SSCSCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCC--CCCCCCeEEEEEEEEECCC--CCccccceEE
Confidence 9999999999999999999999999999999999887643221 111 1223578999999999975 5689999999
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK 585 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~ 585 (816)
+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|.+|++||+|||.++++..
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~ 456 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA 456 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4347 586 SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665 (816)
Q Consensus 586 ~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~ 665 (816)
+++++.++++.+++++++.++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|++
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 457 TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 666 ASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 666 ~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
+.+|+|+|+||||+++++.|| |+|++.|+|+||++.++.|
T Consensus 537 ~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 583 (598)
T 3qf4_B 537 LMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFY 583 (598)
T ss_dssp HHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHH
T ss_pred HcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHH
Confidence 888999999999999999999 9999999999999887643
No 5
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.1e-90 Score=872.28 Aligned_cols=503 Identities=26% Similarity=0.371 Sum_probs=419.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc--CChhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy4347 187 IARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLN--RQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 264 (816)
Q Consensus 187 i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~--~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v 264 (816)
++.++..++.+++.+++...+.++..++|.++|+|++++|++||+. +++|++++|+++|++.++..+...+..++..+
T Consensus 802 ~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~ 881 (1321)
T 4f4c_A 802 VLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTL 881 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHh
Confidence 3334556778889999999999999999999999999999999985 78999999999999999887776666666655
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHH
Q psy4347 265 FELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADR 344 (816)
Q Consensus 265 ~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r 344 (816)
+.++. .++++++++|.+++++++++|+++++.++..++..+...+..+..++....+.|++.|+++||+|+.|+.+.++
T Consensus 882 ~~~i~-~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~ 960 (1321)
T 4f4c_A 882 VSMVA-GIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYEN 960 (1321)
T ss_dssp HHHHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHH
T ss_pred hhHHH-HeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHH
Confidence 54433 34556778999999999998887766655443322222333455567778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH--HH
Q psy4347 345 YEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDL--VM 422 (816)
Q Consensus 345 ~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~l--va 422 (816)
|.+..+...+..++. .....+.......+..+..++++++|++++..|..++|.+ ++
T Consensus 961 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~ 1019 (1321)
T 4f4c_A 961 FCEKLDIPHKEAIKE---------------------AFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLR 1019 (1321)
T ss_dssp HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHH
Confidence 999998888777665 2222233333344455666778889999999988776654 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCccccccee
Q psy4347 423 VNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSN 502 (816)
Q Consensus 423 f~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~ 502 (816)
++.++.....|+..+...+..++++..+++|++++++.+++.++.....+ ..+..|+|+|+||+|+||++++.+||+|
T Consensus 1020 ~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~g~I~f~nVsf~Y~~~~~~~VL~~ 1097 (1321)
T 4f4c_A 1020 VMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGE--KKKLYGKVIFKNVRFAYPERPEIEILKG 1097 (1321)
T ss_dssp HHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSB--CCCCCCCEEEEEEEECCTTSCSSCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCC--CCCCCCeEEEEEEEEeCCCCCCCccccc
Confidence 44444555678888888999999999999999999999887644332221 1234688999999999987566789999
Q ss_pred eeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC
Q psy4347 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD 582 (816)
Q Consensus 503 isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~ 582 (816)
|||+|+|||+||||||||||||||+++|+|||+|++|+|+|||+|++++++++||++|++|||||+||+|||||||+||.
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gl 1177 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGL 1177 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSS
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred --CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q psy4347 583 --KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660 (816)
Q Consensus 583 --~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~ 660 (816)
++++++++++||+.|+++|||.+||+||||+|||+|.+|||||||||||||||++||+|||||||||+||++||+.|+
T Consensus 1178 d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq 1257 (1321)
T 4f4c_A 1178 DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257 (1321)
T ss_dssp CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhchhhhh
Q psy4347 661 SSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSMSLSRF 714 (816)
Q Consensus 661 ~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~~~~~~ 714 (816)
++|++..++||+|+||||++|+++|| |+|+|.|+|+||++++|. |.+++..|.
T Consensus 1258 ~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~-y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1258 EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGA-YYKLTQKQM 1317 (1321)
T ss_dssp HHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred HHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH-HHHHHHHHH
Confidence 99999999999999999999999999 999999999999998765 555654443
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.4e-86 Score=776.30 Aligned_cols=493 Identities=30% Similarity=0.409 Sum_probs=438.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy4347 185 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 264 (816)
Q Consensus 185 ~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v 264 (816)
++++.++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++++|+++|++.++.++...+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b5x_A 71 ILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566778889999999999999999999999999999999999999999999999999999887766666666665
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHH
Q psy4347 265 FELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADR 344 (816)
Q Consensus 265 ~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r 344 (816)
+.+++. +++++.++|.+++++++++|+++++...+.++..+..++.++..++.++.+.|.++|+++||+||.|+.+.++
T Consensus 151 ~~~i~~-~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b5x_A 151 ASIIGL-LTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR 229 (582)
T ss_pred HHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHH
Confidence 544333 3445678999999999999988887777777777777777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy4347 345 YEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVN 424 (816)
Q Consensus 345 ~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~ 424 (816)
|.+..+++.+...+. .+..........++..+..++++++|++++.+|.+|+|+++++.
T Consensus 230 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~ 288 (582)
T 3b5x_A 230 FDKVSNSMRQQTMKL---------------------VSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVF 288 (582)
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999888776 34444445555666667777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeee
Q psy4347 425 GLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLN 504 (816)
Q Consensus 425 ~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~is 504 (816)
.+...+..|+..++..+..++++.++++|++++++.+++..+.. .+. ++..+.|+++||+|+|++ .++++|+|+|
T Consensus 289 ~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~--~~~~~~i~~~~v~~~y~~-~~~~~l~~i~ 363 (582)
T 3b5x_A 289 SAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGK--YEA--ERVNGEVDVKDVTFTYQG-KEKPALSHVS 363 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC--CCC--CCCCCeEEEEEEEEEcCC-CCccccccce
Confidence 99999999999999999999999999999999999876642211 111 112467999999999974 1367999999
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC-C
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD-K 583 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~-~ 583 (816)
|+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|.+|++||+|||.++. +
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 443 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG 443 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 6
Q ss_pred CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4347 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663 (816)
Q Consensus 584 ~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l 663 (816)
+.+++++.++++.+++++++.++|+||||.+||+|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|
T Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l 523 (582)
T 3b5x_A 444 EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523 (582)
T ss_pred CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCch
Q psy4347 664 KTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 664 ~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~ 704 (816)
+++.+|+|+|+||||+++++.|| |+|++.|+|+|+++.++.
T Consensus 524 ~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 571 (582)
T 3b5x_A 524 DELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGA 571 (582)
T ss_pred HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 99888999999999999999998 999999999999987653
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-85 Score=774.69 Aligned_cols=499 Identities=26% Similarity=0.395 Sum_probs=429.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q psy4347 187 IARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFE 266 (816)
Q Consensus 187 i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~~ 266 (816)
++.++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~ 149 (595)
T 2yl4_A 70 AVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQ 149 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567788889999999999999999999999999999999999999999999999998887766555566555554
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHHH
Q psy4347 267 LALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYE 346 (816)
Q Consensus 267 ~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~~ 346 (816)
+++ +++++++++|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.
T Consensus 150 ~i~-~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 228 (595)
T 2yl4_A 150 ASV-GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYA 228 (595)
T ss_dssp HHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHH
T ss_pred HHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHH
Confidence 433 3445567899999999999998888777777777777777778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4347 347 GVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGL 426 (816)
Q Consensus 347 ~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~~ 426 (816)
+..+++.+...+. ............++..+..++++++|++++.+|.+|+|+++++..+
T Consensus 229 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~ 287 (595)
T 2yl4_A 229 SKVDHVMQLARKE---------------------AFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMY 287 (595)
T ss_dssp HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999988887776 3333344444455566667778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCcc-EEEEeeEEEeCCCcccccceeeeE
Q psy4347 427 LFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNAS-IEFRDVNFSYIDKHTKRIFSNLNF 505 (816)
Q Consensus 427 ~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~-I~~~~vsf~Y~~~~~~~vL~~isl 505 (816)
...+..|+..++..+..++++.++++|++++++.+++..+.....+. .+..++ |+++||+|+|+++++.++|+|+||
T Consensus 288 ~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl 365 (595)
T 2yl4_A 288 AFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILN--EKSFQGALEFKNVHFAYPARPEVPIFQDFSL 365 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCC--TTTCCCCEEEEEEEEECSSCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCC--cCCCCCeEEEEEEEEEeCCCCCCccccceEE
Confidence 99999999999999999999999999999999987654322111110 112467 999999999975223579999999
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCC-
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKS- 584 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~- 584 (816)
+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|.+|++||+|||.++.+.
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 445 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP 445 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSST
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred --CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4347 585 --KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662 (816)
Q Consensus 585 --~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~ 662 (816)
.+++++.++++.+++++++.++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.
T Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~ 525 (595)
T 2yl4_A 446 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEA 525 (595)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhhhc
Q psy4347 663 LKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMRSM 709 (816)
Q Consensus 663 l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~~~ 709 (816)
|+++.+++|+|+||||+++++.|| |+|++.|+|+|+++.....|...
T Consensus 526 l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 579 (595)
T 2yl4_A 526 LDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKL 579 (595)
T ss_dssp HHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C-----
T ss_pred HHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHH
Confidence 999877999999999999999998 99999999999998533344444
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.4e-86 Score=775.55 Aligned_cols=493 Identities=29% Similarity=0.411 Sum_probs=438.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy4347 185 YGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI 264 (816)
Q Consensus 185 ~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v 264 (816)
++++.++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b60_A 71 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566778889999999999999999999999999999999999999999999999999999887776666666665
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHH
Q psy4347 265 FELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADR 344 (816)
Q Consensus 265 ~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r 344 (816)
+.+++. +++++.++|.+++++++++|+++++...+.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++
T Consensus 151 ~~~i~~-~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b60_A 151 ASIIGL-FIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR 229 (582)
T ss_dssp HHHHHH-HHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHH
T ss_pred HHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHH
Confidence 544333 3445678999999999999988887777777777777777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy4347 345 YEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVN 424 (816)
Q Consensus 345 ~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~ 424 (816)
|.+..+++.+...+. .+..........++..+..++++++|++++..|.+|+|+++++.
T Consensus 230 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~ 288 (582)
T 3b60_A 230 FDKVSNKMRLQGMKM---------------------VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVF 288 (582)
T ss_dssp HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999888776 34444455555666667777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeee
Q psy4347 425 GLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLN 504 (816)
Q Consensus 425 ~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~is 504 (816)
.+..++..|+..++..+..++++.++++|+.++++.+++..+.. .+. ++..+.|+++||+|+|++ .++++|+|+|
T Consensus 289 ~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~--~~~~~~i~~~~v~~~y~~-~~~~~l~~v~ 363 (582)
T 3b60_A 289 SSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGK--RVI--DRATGDLEFRNVTFTYPG-REVPALRNIN 363 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCC--BCC--SCCCCCEEEEEEEECSSS-SSCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC--CCC--CCCCCcEEEEEEEEEcCC-CCCcccccee
Confidence 99999999999999999999999999999999999877643211 111 122467999999999974 1368999999
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC-C
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD-K 583 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~-~ 583 (816)
|+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|.+|++||+|||.++. +
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 443 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE 443 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 6
Q ss_pred CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4347 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663 (816)
Q Consensus 584 ~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l 663 (816)
+.++++++++++.+++++++.++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.|
T Consensus 444 ~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l 523 (582)
T 3b60_A 444 EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523 (582)
T ss_dssp CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCch
Q psy4347 664 KTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSS 704 (816)
Q Consensus 664 ~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~ 704 (816)
+++.+|+|+|+||||+++++.|| |+|++.|+|+|+++.++.
T Consensus 524 ~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 571 (582)
T 3b60_A 524 DELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 571 (582)
T ss_dssp HHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred HHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCH
Confidence 99878999999999999999998 999999999999987653
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3e-85 Score=827.61 Aligned_cols=501 Identities=26% Similarity=0.390 Sum_probs=446.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhcCChhHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q psy4347 184 GYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPT 263 (816)
Q Consensus 184 ~~~i~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~ 263 (816)
.+.++.++..++.+++.+++.+++.+...++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~ 192 (1284)
T 3g5u_A 113 YYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQA 192 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455667788999999999999999999999999999999999999999999999999999998888777777666
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHH
Q psy4347 264 IFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEAD 343 (816)
Q Consensus 264 v~~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~ 343 (816)
++.++. .+++++.++|++++++++++|+++++..++.+..++..++.++..++.++.+.|+++|+++||+||.|+.+.+
T Consensus 193 ~~~~i~-~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~ 271 (1284)
T 3g5u_A 193 MATFFG-GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271 (1284)
T ss_dssp HHHHHH-HHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHH
Confidence 554433 3455678899999999999999988888888887777777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy4347 344 RYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMV 423 (816)
Q Consensus 344 r~~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf 423 (816)
+|.+.++++.+..++. ....+...++..++..+..++++|+|++++..|.+++|+++++
T Consensus 272 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~ 330 (1284)
T 3g5u_A 272 RYNNNLEEAKRLGIKK---------------------AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTV 330 (1284)
T ss_dssp HHHHHHHHHHHHHHTT---------------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999998887776 3333444455556666777889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceee
Q psy4347 424 NGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNL 503 (816)
Q Consensus 424 ~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~i 503 (816)
+.++..+..|+..+...+..++++.++++|++++++.+|++.+..... ....+..|.|+|+||+|+|+++++.++|+||
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~-~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~i 409 (1284)
T 3g5u_A 331 FFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSG-HKPDNIQGNLEFKNIHFSYPSRKEVQILKGL 409 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSC-CCCTTCCCCEEEEEEEECCSSTTSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccC-CCCCCCCCeEEEEEEEEEcCCCCCCcceecc
Confidence 888888899999999999999999999999999999887654321111 1112236789999999999864456899999
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCC
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK 583 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~ 583 (816)
||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||||+||++||+|||.+|.+
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~ 489 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE 489 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4347 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663 (816)
Q Consensus 584 ~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l 663 (816)
+.++++++++|+.++++++|.++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.|++.+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l 569 (1284)
T 3g5u_A 490 DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL 569 (1284)
T ss_dssp SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhhh
Q psy4347 664 KTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAMR 707 (816)
Q Consensus 664 ~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~~ 707 (816)
+++.+|+|+|+||||++++.+|| |+|++.|+|+||++.++.|+.
T Consensus 570 ~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 620 (1284)
T 3g5u_A 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620 (1284)
T ss_dssp HHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHH
T ss_pred HHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHH
Confidence 99888999999999999999999 999999999999998775543
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3e-78 Score=763.81 Aligned_cols=496 Identities=28% Similarity=0.412 Sum_probs=433.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh--cCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q psy4347 188 ARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHL--NRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIF 265 (816)
Q Consensus 188 ~~~~~~~l~~lr~~l~~~i~~~~~~~lr~~lf~~Ll~lp~~ff~--~~~~G~l~sri~~d~~~i~~~~~~~~~~ii~~v~ 265 (816)
+.++..++.+++.+++.+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|.+.++..+...+..++..++
T Consensus 758 l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~ 837 (1284)
T 3g5u_A 758 LGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIA 837 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666788899999999999999999999999999999999 4789999999999999999888777666666555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHchHHHHHHhcchHHHHHHH
Q psy4347 266 ELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRY 345 (816)
Q Consensus 266 ~~v~~~~il~~~~~~~LaLi~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~gi~tVKaf~~E~~~~~r~ 345 (816)
.++ ..+++++.++|.+++++++++|+++++.++..+...+...+..+..++.+..+.|++.|+++||+|+.|+.+.++|
T Consensus 838 ~~~-~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~ 916 (1284)
T 3g5u_A 838 NLG-TGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMY 916 (1284)
T ss_dssp HHH-HHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHH
T ss_pred HHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 443 3345567789999999999999988877776666666655666667777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy4347 346 EGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNG 425 (816)
Q Consensus 346 ~~~~~~~~~~~~k~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~i~~l~~~~vl~~G~~lV~~G~ltvG~lvaf~~ 425 (816)
.+..+...+...+. ....+....+...+..+..++++++|++++..|.+++|.++++..
T Consensus 917 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~ 975 (1284)
T 3g5u_A 917 AQSLQIPYRNAMKK---------------------AHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFS 975 (1284)
T ss_dssp HHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 99988877766665 233333334445556677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeE
Q psy4347 426 LLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNF 505 (816)
Q Consensus 426 ~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl 505 (816)
++.....|+..+...+..++++..+++|++++++.+|+..+..... .......+.|+|+||+|+|+++++.++|+||||
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~-~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl 1054 (1284)
T 3g5u_A 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQG-LKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSL 1054 (1284)
T ss_dssp HHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSC-CCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc-ccccCCCCcEEEEEEEEECCCCCCCeeecceeE
Confidence 9999999999999888999999999999999999887653321111 111123578999999999986444689999999
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCC--
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK-- 583 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~-- 583 (816)
+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++.+
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR 1134 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4347 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663 (816)
Q Consensus 584 ~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l 663 (816)
..++++++++++.+++++++.++|+||||.|||+|.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|
T Consensus 1135 ~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l 1214 (1284)
T 3g5u_A 1135 VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214 (1284)
T ss_dssp CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCchhh
Q psy4347 664 KTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNSSAM 706 (816)
Q Consensus 664 ~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~~~~ 706 (816)
++..+|+|+|+||||++++..|| |+|+|.|+|+||++.++.|+
T Consensus 1215 ~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~ 1264 (1284)
T 3g5u_A 1215 DKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYF 1264 (1284)
T ss_dssp HHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHH
T ss_pred HHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHH
Confidence 99888999999999999999998 99999999999999877544
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.3e-64 Score=546.88 Aligned_cols=262 Identities=47% Similarity=0.731 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCC
Q psy4347 440 VYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGS 519 (816)
Q Consensus 440 ~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~s 519 (816)
.+..++++.++++|++++++.+++..+.+...+. ....+.|+|+||+|+|++ +.++|+||||+|++||++||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~--~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPL--RFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCC--CCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSS
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccccccc--CCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCC
Confidence 3457888999999999999987664332221111 123568999999999975 468999999999999999999999
Q ss_pred CCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCC
Q psy4347 520 GSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADL 599 (816)
Q Consensus 520 GsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l 599 (816)
|||||||+++|+|+|+|++|+|.+||+|+.+++..++|++||||||++.||++||+|||.|+.+..++++++++++.+++
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred hhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecCh
Q psy4347 600 HNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679 (816)
Q Consensus 600 ~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrl 679 (816)
++++..+|+||||.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++.+++|+|+||||+
T Consensus 170 ~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred hHHHhcc-------CeEEEEcChhHHhhcCchh
Q psy4347 680 STIKHLL-------GYKAHRKTSTNLVRGNSSA 705 (816)
Q Consensus 680 s~i~~~d-------g~i~~~g~~~~L~~~~~~~ 705 (816)
+++..|| |+|++.|+|++|++.++.|
T Consensus 250 ~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y 282 (306)
T 3nh6_A 250 STVVNADQILVIKDGCIVERGRHEALLSRGGVY 282 (306)
T ss_dssp HHHHTCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 9999998 9999999999999887643
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=6.9e-54 Score=451.93 Aligned_cols=221 Identities=42% Similarity=0.656 Sum_probs=208.7
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
.+|+++||+|+|++ .++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+.+...+|+.
T Consensus 6 ~~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 46999999999942 13679999999999999999999999999999999999999999999999999999888889999
Q ss_pred cEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q psy4347 560 IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p 639 (816)
||||||++.+|..||+|||.++.+..+++++.++++.+++.+++.++|.||++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987666778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhc
Q psy4347 640 PILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 640 ~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~ 701 (816)
++||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..|| |++++.|+++++.+.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999998877899999999999998887 999999999999876
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.5e-52 Score=444.84 Aligned_cols=223 Identities=49% Similarity=0.759 Sum_probs=208.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
+.|+++||+|+|++...+++|+||||+|++||++||+||||||||||+++|+|+++| +|+|.+||.|+.+.+...+|+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 459999999999652125799999999999999999999999999999999999987 8999999999988888889999
Q ss_pred cEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q psy4347 560 IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p 639 (816)
|+||||++.+|+.||+|||.++.+..+++++.++++.+++.+++..+|+|+||.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986556678889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 640 PILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 640 ~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
+|||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..|| |+|++.|+++++++..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 245 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG 245 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcCh
Confidence 99999999999999999999999999877899999999999988888 99999999999987654
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-53 Score=445.27 Aligned_cols=219 Identities=40% Similarity=0.633 Sum_probs=205.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|+|++ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999953 467999999999999999999999999999999999999999999999999998887777899999
Q ss_pred EEcCCCCcccccHHHHHhcC-CCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q psy4347 562 IVPQDPVLFHDTILYNINYG-DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~-~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~ 640 (816)
||||++.+|.+|++|||.++ .+..+++++.++++.+++.+++.++|.|++|.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 55567788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcC
Q psy4347 641 ILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~ 702 (816)
+||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..|| |++++.|+++++.+..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 228 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 9999999999999999999999998777899999999999998888 9999899999887653
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6.3e-52 Score=442.70 Aligned_cols=225 Identities=33% Similarity=0.554 Sum_probs=207.0
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
.+.|+++||+|+|+++.+.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999996411267999999999999999999999999999999999999999999999999998888888899
Q ss_pred ccEEEcCCCCcccccHHHHHhcCCCCCCH-HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 559 HIAIVPQDPVLFHDTILYNINYGDKSKSY-EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~-~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
+|+||||++.+|..||+|||.++.+.... +++.++++.+++.+++..+|+|+++.+++.+.+|||||||||+|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654443 67778888899999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
+|+|||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+..|| |+|++.|+++++.+..+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~ 248 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcH
Confidence 9999999999999999999999999999754 899999999999998888 99999999999987654
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-50 Score=450.39 Aligned_cols=222 Identities=26% Similarity=0.431 Sum_probs=209.4
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
.+.|+++||+|+|++ .+.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++...+|+
T Consensus 17 ~~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 467999999999964 24689999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 559 HIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
.||||||++.||.+||+||+.++.. ...+++.++++.+++.+++.++|.+|+|.++++|.+|||||||||||||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~~-~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNAA-HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTCC-SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhccc-cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986543 467899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 639 TPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
|++||||||||+||+.++..+++.|+++.+++|+|+|||+++.+..|| |+|++.|+++++.+...
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~ 245 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA 245 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCS
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 999999999999999999999999998877899999999999998888 99999999999988654
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.6e-49 Score=408.89 Aligned_cols=209 Identities=25% Similarity=0.413 Sum_probs=189.6
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
+.|+++||+|+|++ .++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+|| .
T Consensus 5 ~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 46999999999963 246899999999999999999999999999999999999999999999999 3
Q ss_pred cEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q psy4347 560 IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639 (816)
Q Consensus 560 i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p 639 (816)
|+||||++.+|.+|++|||.++.. .....+.++++..++.+++..+|.+++|.+++.+.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999854 3445566777888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 640 PILVFDEATSSLDSITENNILSS-LKTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 640 ~iLiLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
++||||||||+||+.++..+.+. ++++.+++|+|+|||+++.+..|| |++++.|+++++.+..+
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 221 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQP 221 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcCh
Confidence 99999999999999999999997 455556899999999999998888 99999999999887543
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-48 Score=409.89 Aligned_cols=208 Identities=29% Similarity=0.475 Sum_probs=189.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+|+|++ .++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+|| .|
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 3899999999963 136799999999999999999999999999999999999999999999999 39
Q ss_pred EEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q psy4347 561 AIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640 (816)
Q Consensus 561 ~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~ 640 (816)
+||||++.+|+.|++|||.++.. ...++..++.+..++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999864 23345667778888888899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH---HhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcCc
Q psy4347 641 ILVFDEATSSLDSITENNILSSLK---TASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~---~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~~ 703 (816)
+||||||||+||+.++..+.+.|. ++.+++|+|+|||+++.+..|| |+|++.|+++++.+..+
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 220 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDG 220 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccH
Confidence 999999999999999999999984 4456899999999999988887 99999999999987654
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7e-48 Score=403.19 Aligned_cols=207 Identities=32% Similarity=0.465 Sum_probs=173.9
Q ss_pred EEEEeeEEEeCCCc-ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH----
Q psy4347 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL---- 556 (816)
Q Consensus 482 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l---- 556 (816)
|+++||+|+|+.+. +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996421 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred hhccEEEcCCCCcccc-cHHHHHhcCC-----CCCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 557 RRHIAIVPQDPVLFHD-TILYNINYGD-----KSKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~~-Ti~eNi~~~~-----~~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
|+.||||||++.+|.. ||+||+.++. ...+ .+++.++++..++.+... .....+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA----------NHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGT----------TCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhh----------hCChhhCCHHHH
Confidence 4579999999999976 9999998741 1122 245667777777765331 223478999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHhcc-------CeEEEEcChhH
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHLL-------GYKAHRKTSTN 697 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~ 697 (816)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ |+|+|+|||+++.+..|| |+|++.++-++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988743 899999999999877676 88887776555
Q ss_pred H
Q psy4347 698 L 698 (816)
Q Consensus 698 L 698 (816)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.4e-47 Score=423.00 Aligned_cols=213 Identities=29% Similarity=0.452 Sum_probs=187.4
Q ss_pred ccEEEEeeEEEeCCC-cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH---
Q psy4347 480 ASIEFRDVNFSYIDK-HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS--- 555 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~--- 555 (816)
.-|+++||+++|+.+ ...++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 459999999999642 1356999999999999999999999999999999999999999999999999999988755
Q ss_pred HhhccEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHH
Q psy4347 556 LRRHIAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628 (816)
Q Consensus 556 lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQR 628 (816)
+|+.||||||++.+|. .||+|||.++.. ..+ .+++.++++..++.++..+.| .+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 4789999999999995 499999987521 122 245778888889987766666 6899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHH
Q psy4347 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNL 698 (816)
Q Consensus 629 iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L 698 (816)
++|||||+.+|++||||||||+||+.+...|++.|+++. .|+|+|+|||+++.+.. || |+|++.|+.+++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999874 38999999999999976 66 999999999999
Q ss_pred hhcCc
Q psy4347 699 VRGNS 703 (816)
Q Consensus 699 ~~~~~ 703 (816)
.....
T Consensus 252 ~~~p~ 256 (366)
T 3tui_C 252 FSHPK 256 (366)
T ss_dssp HSSCC
T ss_pred HhCCC
Confidence 87654
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.1e-48 Score=411.63 Aligned_cols=208 Identities=27% Similarity=0.416 Sum_probs=181.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC--CCChHHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN--DVDLDSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~--~~~~~~lr~ 558 (816)
-|+++||+|+|++ ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4999999999965 456999999999999999999999999999999999999999999999999995 233457889
Q ss_pred ccEEEcCCC--CcccccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 559 HIAIVPQDP--VLFHDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 559 ~i~~V~Q~~--~LF~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
.||||||+| .+|..||+|||.++.. ..+ .+++.++++..++.++..+.| .+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT-----------HCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG-----------GGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc-----------ccCCHHHHHHHH
Confidence 999999997 5788899999987621 122 245677888888876554444 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. || |+|++.|+.+++..
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999975 66 99999999999876
Q ss_pred c
Q psy4347 701 G 701 (816)
Q Consensus 701 ~ 701 (816)
.
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 4
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.9e-47 Score=395.63 Aligned_cols=211 Identities=21% Similarity=0.398 Sum_probs=177.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH-hhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL-RRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l-r~~ 559 (816)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999954 579999999999999999999999999999999999999999999999999988877655 556
Q ss_pred cEEEcCCCCcccc-cHHHHHhcCC-CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 560 IAIVPQDPVLFHD-TILYNINYGD-KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 560 i~~V~Q~~~LF~~-Ti~eNi~~~~-~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
||||||++.+|.. |++||+.++. +..+.++..+.++ +.++.++ |++...+....+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999976 9999999864 2222222222221 2333343 44555566678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~ 700 (816)
+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. || |++++.|+++++.+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999998875 58999999999987754 66 89998888888764
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.8e-46 Score=399.56 Aligned_cols=207 Identities=27% Similarity=0.386 Sum_probs=184.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+|+...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999964 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCc-ccccHHHHHhcCCC----CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 561 AIVPQDPVL-FHDTILYNINYGDK----SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 561 ~~V~Q~~~L-F~~Ti~eNi~~~~~----~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
+||+|++.+ |..||+||+.++.. ....+++.++++..++.++..+.| .+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY-----------RVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBG-----------GGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999887 47799999998742 223467888888888866544433 57999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 636 LK------NTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 636 l~------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
+. +|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. || |+|++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988743 4799999999999875 66 9999999999986
Q ss_pred hc
Q psy4347 700 RG 701 (816)
Q Consensus 700 ~~ 701 (816)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.5e-46 Score=399.43 Aligned_cols=208 Identities=31% Similarity=0.467 Sum_probs=181.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC--CCChHHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN--DVDLDSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~--~~~~~~lr~ 558 (816)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 57999999999999999999999999999999999999999999999999985 334566788
Q ss_pred ccEEEcCCCCcccc-cHHHHHhcCC---CCCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 559 HIAIVPQDPVLFHD-TILYNINYGD---KSKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~-Ti~eNi~~~~---~~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
.||||||++.+|.. |++||+.++. ...+ .+++.++++..++.++..+.| .+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP-----------DSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh-----------hhCCHHHHHHHH
Confidence 99999999999965 9999998842 1122 345777888888876644433 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. || |+|++.|+.+++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998864 48999999999999875 66 999999999988765
Q ss_pred C
Q psy4347 702 N 702 (816)
Q Consensus 702 ~ 702 (816)
.
T Consensus 250 ~ 250 (263)
T 2olj_A 250 P 250 (263)
T ss_dssp C
T ss_pred c
Confidence 3
No 25
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-46 Score=394.83 Aligned_cols=207 Identities=23% Similarity=0.388 Sum_probs=182.1
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
+.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 56999999999953 579999999999999999999999999999999999999999999999999976 55678899
Q ss_pred cEEEcCCCCcccc-cHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDPVLFHD-TILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~~LF~~-Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
||||||++.+|.. |++||+.++.. ..+ .+++.++++..++.++..+.| .+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV-----------STYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG-----------GGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999966 99999987521 112 245778888888877654433 68999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
|||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+++++.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999998874 58999999999999987 66 999999999888653
No 26
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.3e-46 Score=409.55 Aligned_cols=209 Identities=25% Similarity=0.443 Sum_probs=182.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC--CChHHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND--VDLDSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~--~~~~~lr~ 558 (816)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+ .+....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999954 679999999999999999999999999999999999999999999999999933 22334578
Q ss_pred ccEEEcCCCCccc-ccHHHHHhcCCCC--C----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 559 HIAIVPQDPVLFH-DTILYNINYGDKS--K----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 559 ~i~~V~Q~~~LF~-~Ti~eNi~~~~~~--~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
.||||||++.||. .||+|||.|+... . ..+++.++++..++.++..+.| .+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 8999999999994 5999999997431 1 1356788889999988776666 6899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTA--SRNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~--~~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
||||+.+|++||||||||+||+.+...+.+.|.++ ..|+|+|+|||+++.+.. || |+|++.|+.+++.+.
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999999999877664 248999999999999865 66 999999999999876
Q ss_pred Cc
Q psy4347 702 NS 703 (816)
Q Consensus 702 ~~ 703 (816)
..
T Consensus 230 p~ 231 (359)
T 3fvq_A 230 PA 231 (359)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.9e-46 Score=387.21 Aligned_cols=200 Identities=27% Similarity=0.365 Sum_probs=172.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH---Hh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS---LR 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~---lr 557 (816)
-|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999954 57999999999999999999999999999999999999999999999999998877543 44
Q ss_pred -hccEEEcCCCCccc-ccHHHHHhcCCC--CC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 558 -RHIAIVPQDPVLFH-DTILYNINYGDK--SK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 558 -~~i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+.|+||||++.+|. .|++||+.++.. .. ..+++.++++..++.++..+.| .+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP-----------YELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 78999999999985 599999987521 11 1345777788888766544433 68999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-------CeEEEEcC
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL-------GYKAHRKT 694 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------g~i~~~g~ 694 (816)
+|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+..|| |++++.|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999998864 4899999999999886666 77776664
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-46 Score=395.93 Aligned_cols=208 Identities=29% Similarity=0.449 Sum_probs=180.8
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC----------
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND---------- 550 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~---------- 550 (816)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999953 579999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HHHhhccEEEcCCCCcccc-cHHHHHhcCC---CCCC----HHHHHHHHHHcCChhH-HHhCCCCccccccCCC
Q psy4347 551 VDL---DSLRRHIAIVPQDPVLFHD-TILYNINYGD---KSKS----YEETIEAAKLADLHNS-IIKWPNHYETQVGERG 618 (816)
Q Consensus 551 ~~~---~~lr~~i~~V~Q~~~LF~~-Ti~eNi~~~~---~~~~----~~~i~~a~~~a~l~~~-I~~LP~GydT~VGE~G 618 (816)
++. ..+|+.||||||++.+|.. |++||+.++. ...+ .+++.++++..++.++ ..+.|
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----------- 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc-----------
Confidence 443 3568899999999999965 9999998842 1122 3457788888898877 54444
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeE
Q psy4347 619 LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYK 689 (816)
Q Consensus 619 ~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i 689 (816)
.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. || |+|
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999998864 48999999999999875 66 999
Q ss_pred EEEcChhHHhhcC
Q psy4347 690 AHRKTSTNLVRGN 702 (816)
Q Consensus 690 ~~~g~~~~L~~~~ 702 (816)
++.|+.+++.+..
T Consensus 232 ~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 232 EEEGDPEQVFGNP 244 (262)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEeCCHHHHHhCc
Confidence 9999999987653
No 29
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.2e-46 Score=413.67 Aligned_cols=207 Identities=25% Similarity=0.390 Sum_probs=184.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++...+.. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 3899999999964 6799999999999999999999999999999999999999999999999999887765 4789
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.||. .||+|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHH
Confidence 99999999995 599999998621 122 356788889999988776666 689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
||+.+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. || |+|++.|+.+++.....
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999999988743 8999999999998865 66 99999999999987654
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8e-46 Score=394.49 Aligned_cols=208 Identities=28% Similarity=0.459 Sum_probs=182.8
Q ss_pred EEEEeeEEEeCCCcc--cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 482 IEFRDVNFSYIDKHT--KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
|+++||+|+|+.... +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. .+|+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 899999999962111 5799999999999999999999999999999999999999999999999998642 67889
Q ss_pred cEEEcCCC--CcccccHHHHHhcCCC-----CCCHHHHHHHHHHcCCh--hHHHhCCCCccccccCCCCCCChhHHHHHH
Q psy4347 560 IAIVPQDP--VLFHDTILYNINYGDK-----SKSYEETIEAAKLADLH--NSIIKWPNHYETQVGERGLKLSGGEKQRVA 630 (816)
Q Consensus 560 i~~V~Q~~--~LF~~Ti~eNi~~~~~-----~~~~~~i~~a~~~a~l~--~~I~~LP~GydT~VGE~G~~LSGGqrQRia 630 (816)
||||||++ .+|..|++||+.++.. ....+++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 5678899999998632 12356788999999998 7776665 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhc
Q psy4347 631 IARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 631 iARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~ 701 (816)
|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. || |++++.|+++++.+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 58999999999999876 66 999999999998765
Q ss_pred Cc
Q psy4347 702 NS 703 (816)
Q Consensus 702 ~~ 703 (816)
..
T Consensus 229 ~~ 230 (266)
T 2yz2_A 229 YD 230 (266)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 31
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=5.5e-46 Score=400.34 Aligned_cols=204 Identities=26% Similarity=0.429 Sum_probs=171.1
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
.+.|+++||+|.| .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999964 4699999999999999999999999999999999999999999999998
Q ss_pred ccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 559 HIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
+|+||||++.+|.+|++|||. +.. .....+.++++..++.+++..+|.+++|.+++.+.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 499999999999999999998 532 344556677788899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCEEEEEecChhHHHhcc-------CeEEEEcChhHHhhcC
Q psy4347 639 TPILVFDEATSSLDSITENNILSSL-KTASRNKTTICIAHRLSTIKHLL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 639 p~iLiLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~L~~~~ 702 (816)
|++||||||||+||+.++..+.+.+ +++.+++|+|+|||+++.+..|| |++++.|+++++.+..
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 249 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLR 249 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHC
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhc
Confidence 9999999999999999999999974 45556899999999999998888 9999999999987543
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=8.2e-46 Score=392.46 Aligned_cols=203 Identities=21% Similarity=0.362 Sum_probs=174.9
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRH 559 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~ 559 (816)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+. ..+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999954 579999999999999999999999999999999999999999999999999987765 446788
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCCC---------------CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCC
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDKS---------------KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGL 619 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~~---------------~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~ 619 (816)
||||||++.+|. .|++||+.++... .+ .+++.++++..++.++.. ....
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-----------RKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-----------CCch
Confidence 999999999985 6999999986321 11 234566666666655433 3347
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh-cc-------CeEE
Q psy4347 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH-LL-------GYKA 690 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~-~d-------g~i~ 690 (816)
+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. || |+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998864 48999999999999864 56 8888
Q ss_pred EEcChhH
Q psy4347 691 HRKTSTN 697 (816)
Q Consensus 691 ~~g~~~~ 697 (816)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 8888887
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-45 Score=404.44 Aligned_cols=207 Identities=27% Similarity=0.423 Sum_probs=184.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999953 5799999999999999999999999999999999999999999999999999887653 6789
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCCC--CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDKS--KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~~--~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.+|. .|++|||.|+... .+ .+++.++++..++.++..+.| .+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 5999999997421 11 256888999999988877766 689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. || |+|++.|+++++.+...
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988643 7999999999998854 66 99999999999987643
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.1e-45 Score=405.36 Aligned_cols=208 Identities=27% Similarity=0.456 Sum_probs=184.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+++|++ +.++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.+. .++.
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999942 3579999999999999999999999999999999999999999999999999987654 4788
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
||||||++.||. .|++|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 999999999995 599999998621 112 356788899999988776666 68999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
|||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. || |+|++.|+.+++.+..
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988643 7999999999998865 66 9999999999998754
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-45 Score=395.78 Aligned_cols=206 Identities=24% Similarity=0.390 Sum_probs=177.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC--CCChHHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN--DVDLDSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~--~~~~~~lr~ 558 (816)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999954 57999999999999999999999999999999999999999999999999998 777788899
Q ss_pred ccEEEcCCCCc-ccc--cHHHHHhcCCCC-------CC---HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 559 HIAIVPQDPVL-FHD--TILYNINYGDKS-------KS---YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 559 ~i~~V~Q~~~L-F~~--Ti~eNi~~~~~~-------~~---~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
.||||||++.+ |.. |++||+.++... .. .+++.++++..++.++..+. ..+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----------IGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----------GGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHH
Confidence 99999999865 444 999999986311 12 24567777888876654333 36899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEE--EEEecChhHHHh-cc-------CeEEEEcC
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-NKTT--ICIAHRLSTIKH-LL-------GYKAHRKT 694 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~--i~IaHrls~i~~-~d-------g~i~~~g~ 694 (816)
|||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ |+|+ |+|||+++.+.. || |+|++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988643 7899 999999999854 55 89998888
Q ss_pred hhHHhh
Q psy4347 695 STNLVR 700 (816)
Q Consensus 695 ~~~L~~ 700 (816)
++++.+
T Consensus 247 ~~~~~~ 252 (279)
T 2ihy_A 247 VEDILT 252 (279)
T ss_dssp HHHHCS
T ss_pred HHHHhc
Confidence 888754
No 36
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.9e-45 Score=403.76 Aligned_cols=207 Identities=26% Similarity=0.388 Sum_probs=178.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999953 5799999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCCC--CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDKS--KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~~--~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.||. .|++|||.|+... .+ .+++.++++..++.++..+.| .+||||||||+||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 5999999997431 22 245788889999988777766 689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. || |+|++.|+++++.+...
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988643 7999999999998854 66 99999999999987643
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-45 Score=406.01 Aligned_cols=207 Identities=28% Similarity=0.452 Sum_probs=183.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 5799999999999999999999999999999999999999999999999999887653 5789
Q ss_pred EEEcCCCCccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 561 AIVPQDPVLFH-DTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 561 ~~V~Q~~~LF~-~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|||||++.||. .||+|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 599999998621 112 346788889999988776666 689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
||+.+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. || |+|++.|+++++.+...
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988743 8999999999998754 66 99999999999987643
No 38
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4e-45 Score=383.57 Aligned_cols=202 Identities=26% Similarity=0.412 Sum_probs=176.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+|+|++ +|+||||+|++ |++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..|+.||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999942 49999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEcCCCCcccc-cHHHHHhcCCCCC----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 562 IVPQDPVLFHD-TILYNINYGDKSK----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~~~~----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
||||++.+|.. |++||+.++.... ..+++.++++..++.++..+.| .+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHHHHHH
Confidence 99999999966 9999999874321 1356777888888876554444 689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcC
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~ 702 (816)
.+|++||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+.. || |++++.|+++++.+..
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999988743 8999999999998755 66 9999999999987654
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.1e-45 Score=404.49 Aligned_cols=208 Identities=27% Similarity=0.414 Sum_probs=183.0
Q ss_pred EEEEeeEEEeCCCcccc--cceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC---hHHH
Q psy4347 482 IEFRDVNFSYIDKHTKR--IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD---LDSL 556 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~--vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~---~~~l 556 (816)
|+++||+++|++ .+ +|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.+ ....
T Consensus 4 l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 899999999953 56 999999999999999999999999999999999999999999999999986521 2345
Q ss_pred hhccEEEcCCCCccc-ccHHHHHhcCCCC--CC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 557 RRHIAIVPQDPVLFH-DTILYNINYGDKS--KS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~--~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+++||||||++.||. .|++|||.|+... .+ .+++.++++..++.++..+.| .+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHH
Confidence 789999999999995 5999999997431 12 356788899999988776666 68999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
+|||||+.+|++||||||||+||+.+...+.+.|+++.+ |+|+|+|||+++.+.. || |+|++.|+.+++.
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988643 7999999999998865 66 9999999999998
Q ss_pred hcCc
Q psy4347 700 RGNS 703 (816)
Q Consensus 700 ~~~~ 703 (816)
+...
T Consensus 230 ~~p~ 233 (353)
T 1oxx_K 230 DNPV 233 (353)
T ss_dssp HSCS
T ss_pred hCcc
Confidence 7643
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.1e-45 Score=400.53 Aligned_cols=205 Identities=28% Similarity=0.461 Sum_probs=182.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
|+++||+++|++ . +|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+. .|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999954 5 9999999999999999999999999999999999999999999999999987554 478999
Q ss_pred EEcCCCCcccc-cHHHHHhcCCC---CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 562 IVPQDPVLFHD-TILYNINYGDK---SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 562 ~V~Q~~~LF~~-Ti~eNi~~~~~---~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
||||++.||.. |++|||.|+.. ...++++.++++..++.++..+.| .+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999965 99999998621 112378889999999988766666 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHh-cc-------CeEEEEcChhHHhhcCc
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~~~~~ 703 (816)
+|++||||||||+||+.+...+.+.|+++. .|.|+|+|||+++.+.. || |+|++.|+.+++.+...
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~ 220 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV 220 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 999999999999999999999999998864 38999999999998754 66 99999999999987643
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.2e-44 Score=381.89 Aligned_cols=201 Identities=23% Similarity=0.308 Sum_probs=179.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+|+ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999986 4899999999999999999999999999999999999999 9999999999888888899999
Q ss_pred EEEcCCCCcccc-cHHHHHhcCCC-CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 561 AIVPQDPVLFHD-TILYNINYGDK-SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 561 ~~V~Q~~~LF~~-Ti~eNi~~~~~-~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
+||||++.+|.. |++||+.++.. ..+.+++.++++..++.++..+ ...+||||||||++|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-----------BGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998864 99999998742 2246788889999998776543 3368999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHH-hcc-------CeEEEEcChhHHhh
Q psy4347 639 TP-------ILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIK-HLL-------GYKAHRKTSTNLVR 700 (816)
Q Consensus 639 p~-------iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~-~~d-------g~i~~~g~~~~L~~ 700 (816)
|+ +||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+. .|| |++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 5899999999999985 566 89998898888754
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.2e-45 Score=403.56 Aligned_cols=207 Identities=29% Similarity=0.406 Sum_probs=182.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC------CChH
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND------VDLD 554 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~------~~~~ 554 (816)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 3899999999953 579999999999999999999999999999999999999999999999999876 444
Q ss_pred HHhhccEEEcCCCCcc-cccHHHHHhcCCC--CCC----HHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 555 SLRRHIAIVPQDPVLF-HDTILYNINYGDK--SKS----YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~--~~~----~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
.+++||||||++.|| +.|++|||.|+.. ..+ .+++.++++..++.++..+.| .+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHH
Confidence 367899999999999 5699999998621 112 246788889999988776666 689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhH
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTN 697 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~ 697 (816)
|+||||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. || |+|++.|++++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988643 7999999999998864 66 99999999999
Q ss_pred HhhcCc
Q psy4347 698 LVRGNS 703 (816)
Q Consensus 698 L~~~~~ 703 (816)
+.+...
T Consensus 227 l~~~p~ 232 (372)
T 1g29_1 227 VYDKPA 232 (372)
T ss_dssp HHHSCS
T ss_pred HHhCcc
Confidence 987643
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.6e-45 Score=384.56 Aligned_cols=201 Identities=24% Similarity=0.338 Sum_probs=167.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC--CCCCcceEEECCEeCCCCChHHH-hh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLDSL-RR 558 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl--~~p~~G~I~idG~di~~~~~~~l-r~ 558 (816)
|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999954 5799999999999999999999999999999999999 89999999999999988877655 45
Q ss_pred ccEEEcCCCCcccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCCh-hHHHhCCCCccccccCCCCC-CChhHH
Q psy4347 559 HIAIVPQDPVLFHD-TILYNINYGDK-----SKS----YEETIEAAKLADLH-NSIIKWPNHYETQVGERGLK-LSGGEK 626 (816)
Q Consensus 559 ~i~~V~Q~~~LF~~-Ti~eNi~~~~~-----~~~----~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~-LSGGqr 626 (816)
.++||||++.+|.+ |++||+.++.. ... .+++.++++..++. +...+.| .+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----------NEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----------TCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----------ccCCCHHHH
Confidence 69999999999965 99999986421 111 24566777777773 4433322 35 999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh--cc-------CeEEEEcChh
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH--LL-------GYKAHRKTST 696 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~--~d-------g~i~~~g~~~ 696 (816)
||++|||||+++|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999999874 47999999999999886 36 8888888876
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.9e-44 Score=380.35 Aligned_cols=206 Identities=21% Similarity=0.286 Sum_probs=172.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC--CCCCcceEEECCEeCCCCChHHH-h
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLDSL-R 557 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl--~~p~~G~I~idG~di~~~~~~~l-r 557 (816)
.|+++||+|+|++ +++|+||||+|++||++||+||||||||||+|+|+|+ ++|++|+|.+||.++.+.+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 6799999999999999999999999999999999999 67999999999999988876655 4
Q ss_pred hccEEEcCCCCcccc-cHHHHHhcCC---------CCCCH----HHHHHHHHHcCChh-HHHhCCCCccccccCCCCCCC
Q psy4347 558 RHIAIVPQDPVLFHD-TILYNINYGD---------KSKSY----EETIEAAKLADLHN-SIIKWPNHYETQVGERGLKLS 622 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~~-Ti~eNi~~~~---------~~~~~----~~i~~a~~~a~l~~-~I~~LP~GydT~VGE~G~~LS 622 (816)
..|+||||++.+|.+ |+.||+.++. +..+. +++.++++..++.+ ...+ .++ .+||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-------~~~---~~LS 166 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTR-------SVN---VGFS 166 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTS-------BTT---TTCC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcC-------Ccc---cCCC
Confidence 569999999999965 9999986531 11222 34556666666632 2111 111 2599
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHh--cc-------CeEEEE
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKH--LL-------GYKAHR 692 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~--~d-------g~i~~~ 692 (816)
||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. || |++++.
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999874 47999999999999876 56 999999
Q ss_pred cChhHHh
Q psy4347 693 KTSTNLV 699 (816)
Q Consensus 693 g~~~~L~ 699 (816)
|+++++.
T Consensus 247 g~~~~~~ 253 (267)
T 2zu0_C 247 GDFTLVK 253 (267)
T ss_dssp ECTTHHH
T ss_pred cCHHHHh
Confidence 9888764
No 45
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=9.5e-45 Score=374.43 Aligned_cols=190 Identities=19% Similarity=0.335 Sum_probs=166.1
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|+++||+|+|+ + ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 3599999999994 4 7999999999999999999999999999999999999999999999999986 36889
Q ss_pred cEEEcCCCCcccc-cHHHHHhcCCC----CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 560 IAIVPQDPVLFHD-TILYNINYGDK----SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 560 i~~V~Q~~~LF~~-Ti~eNi~~~~~----~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
|+||||++.+|.+ |++||+.++.. ..+.+++.++++..++.+. .....+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHH
Confidence 9999999999975 99999987521 2235677888887776543 33457899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEE
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
|+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+..++.+|+
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999998864 47999999999999887764443
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9.8e-44 Score=375.80 Aligned_cols=192 Identities=27% Similarity=0.393 Sum_probs=165.4
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +++.|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 35799999999999999999999999999999999999999999998 35689
Q ss_pred EEEcCCCCcc-cccHHHHHhcCCC---------CC-CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 561 AIVPQDPVLF-HDTILYNINYGDK---------SK-SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 561 ~~V~Q~~~LF-~~Ti~eNi~~~~~---------~~-~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
|||||++.+| ..|++||+.++.. .. ..+++.++++..++.++..+. ..+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----------FTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----------GGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----------hhhCCHHHHHHH
Confidence 9999999988 6799999998631 11 134577888888887765443 368999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEEecChhHHHh-cc-------CeEEEEcChhHHh
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKH-LL-------GYKAHRKTSTNLV 699 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~i~~-~d-------g~i~~~g~~~~L~ 699 (816)
+|||||+.+|++||||||||+||+.+...+.+.|+++.+ |+|+|+|||+++.+.. || |+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999988743 7999999999999865 55 66 6666666664
No 47
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-43 Score=376.84 Aligned_cols=201 Identities=20% Similarity=0.315 Sum_probs=172.5
Q ss_pred EEEEeeEEEeCCC-cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 482 IEFRDVNFSYIDK-HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
|+++||+|+|++. ..+++|+|+||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+.|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999530 01579999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred E-EEcCCCCcccccHHHHHhcCCC--CCCHHHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 561 A-IVPQDPVLFHDTILYNINYGDK--SKSYEETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 561 ~-~V~Q~~~LF~~Ti~eNi~~~~~--~~~~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
+ ||||++.+ +.|++||+.++.+ ....+++.++++..++. +... ....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-----------RKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-----------SBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 8899999988632 34567788888888876 5433 334689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc--------CeEEEEcChhHHhhc
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL--------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d--------g~i~~~g~~~~L~~~ 701 (816)
.+|++||||||||+||+.+...+.+.|+++.+ |+|+|||+++.+.. || |++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999998854 99999999998754 44 777777777777643
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=2.4e-39 Score=350.24 Aligned_cols=223 Identities=15% Similarity=0.181 Sum_probs=186.0
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeE
Q psy4347 409 EIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVN 488 (816)
Q Consensus 409 lV~~G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vs 488 (816)
....+..+-+.+.+|+.+..+ ..|+..++..+..++++.++++|+.++++.+++..+... ... ...+.|+++||+
T Consensus 34 ~~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~--~~~~~i~~~~vs 108 (305)
T 2v9p_A 34 EYALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWK--SILTFFNYQNIE 108 (305)
T ss_dssp HHHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTH--HHHHHHHHTTCC
T ss_pred HHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--ccc--ccCCeEEEEEEE
Confidence 334566778999999999888 489999999999999999999999999987655322111 100 112459999999
Q ss_pred EEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCC
Q psy4347 489 FSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPV 568 (816)
Q Consensus 489 f~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~ 568 (816)
|+|+ .++|+||||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|++.
T Consensus 109 ~~y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~ 163 (305)
T 2v9p_A 109 LITF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSH 163 (305)
T ss_dssp HHHH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSG
T ss_pred EEcC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccc
Confidence 9995 46999999999999999999999999999999999999 8998 467899999
Q ss_pred cccccHHH-HHhcCCCCCCHHHHHHHHHHcCChhHHHh-CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q psy4347 569 LFHDTILY-NINYGDKSKSYEETIEAAKLADLHNSIIK-WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646 (816)
Q Consensus 569 LF~~Ti~e-Ni~~~~~~~~~~~i~~a~~~a~l~~~I~~-LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE 646 (816)
+|.+|++| ||.++ ++.++ +++++|.. ||+||| |.+|||||||| ||||+++|+|||
T Consensus 164 lf~~ti~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl--- 220 (305)
T 2v9p_A 164 FWLASLADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV--- 220 (305)
T ss_dssp GGGGGGTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE---
T ss_pred cccccHHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE---
Confidence 99999998 99997 33443 23577887 999998 78999999999 999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc------CeEEEEcChhHH
Q psy4347 647 ATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL------GYKAHRKTSTNL 698 (816)
Q Consensus 647 ~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d------g~i~~~g~~~~L 698 (816)
||+||+.++..|.. +|||++++..+| |+|++.|+|+++
T Consensus 221 -Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~ivl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 -TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPCTDESGEQPFNITDADW 264 (305)
T ss_dssp -EESSCSTTCGGGGG-------------GTTTEEEEECCCCCCCC---CCCCCCHHHH
T ss_pred -ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEEEEeCCEEEEeCCHHHH
Confidence 99999999998862 278887776665 999999999999
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.4e-35 Score=337.68 Aligned_cols=184 Identities=23% Similarity=0.253 Sum_probs=152.2
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5899999999953 3699999999999999999999999999999999999999999986 2369
Q ss_pred EEEcCCCCc-ccccHHHHHhcC-CCC-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 561 AIVPQDPVL-FHDTILYNINYG-DKS-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 561 ~~V~Q~~~L-F~~Ti~eNi~~~-~~~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
|||||++.+ +..||.||+... .+. ...+.+.++++..++.+... ....+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYD-----------REVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 477999998753 111 12344555555555544332 2336899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+|++|||||||++||+.+...|.+.|+++. .|.|+|+|||++..+...+++|+..
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl 475 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF 475 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999874 4899999999999998765555443
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.5e-34 Score=339.74 Aligned_cols=184 Identities=23% Similarity=0.258 Sum_probs=154.1
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5899999999953 3699999999999999999999999999999999999999999986 2369
Q ss_pred EEEcCCCCc-ccccHHHHHhcC-CCC-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 561 AIVPQDPVL-FHDTILYNINYG-DKS-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 561 ~~V~Q~~~L-F~~Ti~eNi~~~-~~~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
|||||++.+ ++.|+.||+.+. .+. ...+.+.++++..++.+...+.| .+||||||||++|||||+.
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-----------EDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBG-----------GGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHh
Confidence 999999876 477999998764 111 12345666777777755433322 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+|++|||||||++||+.+...+.+.|+++. .+.|+|+|||++..+...+++|+..
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl 545 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999864 4899999999999998755555443
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-34 Score=334.08 Aligned_cols=186 Identities=23% Similarity=0.249 Sum_probs=156.5
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..++++|+++.|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 35899999999954 4688899999999999999999999999999999999999999998763 4
Q ss_pred cEEEcCCCCc-ccccHHHHHhcCCCC---CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 560 IAIVPQDPVL-FHDTILYNINYGDKS---KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 560 i~~V~Q~~~L-F~~Ti~eNi~~~~~~---~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
|+|+||+... |..||++|+.+.... ...+.+.++++..++.++..+. ..+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESN-----------VNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSB-----------GGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 8999999765 478999999864321 2224455666666665543333 368999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 636 LKNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
+.+|+||||||||++||+.+...|.+.|+++. .+.|+|+|||+++.+...+++|+..
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl 459 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF 459 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999874 4799999999999999876777654
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.3e-34 Score=338.18 Aligned_cols=195 Identities=24% Similarity=0.283 Sum_probs=158.5
Q ss_pred cEEE--------EeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceE---------EE
Q psy4347 481 SIEF--------RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI---------YI 543 (816)
Q Consensus 481 ~I~~--------~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I---------~i 543 (816)
.|++ +||+++|++ ...+|+|+| +|++||++||+||||||||||+|+|+|++.|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3888 899999964 235899999 999999999999999999999999999999999996 45
Q ss_pred CCEeCCCCChH--HHhhccEEEcCCCC----cccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCC
Q psy4347 544 DGKNINDVDLD--SLRRHIAIVPQDPV----LFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617 (816)
Q Consensus 544 dG~di~~~~~~--~lr~~i~~V~Q~~~----LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~ 617 (816)
+|.++.++... ..+..+++++|... ++.+|++||+..... .+++.++++..++.+...+.|
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL~~~~~~~~---------- 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELELENVLDREL---------- 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTCTTGGGSBG----------
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCCCchhCCCh----------
Confidence 67655432111 12346889998743 445699999975322 245677888888866544433
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +|.|+|+|||+++.+....++|+..
T Consensus 227 -~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 227 -HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp -GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence 5799999999999999999999999999999999999999999998864 4899999999999998866676654
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-34 Score=333.14 Aligned_cols=194 Identities=26% Similarity=0.327 Sum_probs=153.9
Q ss_pred EEE-EeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceE---------EECCEeCCCC
Q psy4347 482 IEF-RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI---------YIDGKNINDV 551 (816)
Q Consensus 482 I~~-~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I---------~idG~di~~~ 551 (816)
.++ +||+|+|++ ...+|+||| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECC--ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 466 699999964 235899999 999999999999999999999999999999999996 4567655322
Q ss_pred ChHH--HhhccEEEcCCCCcc----cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 552 DLDS--LRRHIAIVPQDPVLF----HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 552 ~~~~--lr~~i~~V~Q~~~LF----~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
.... .+..+++++|+..++ .+|+.||+..... .+++.++++..++.+...+. + .+|||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~lgl~~~~~~~-------~----~~LSgGe 163 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKALELENVLERE-------I----QHLSGGE 163 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHTTCTTTTTSB-------G----GGCCHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHcCCChhhhCC-------h----hhCCHHH
Confidence 1111 134688999975443 3599999864321 24567788888876543332 2 5799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
||||+|||||+.+|++||||||||+||+.+...+.+.|+++. +|.|+|+|||++..+...+++|+..
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999998863 4899999999999998877777664
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.3e-33 Score=341.20 Aligned_cols=191 Identities=25% Similarity=0.351 Sum_probs=146.5
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhcc
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i 560 (816)
-|+++||+|+|++ .++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. ..|
T Consensus 671 mL~v~nLs~~Y~g-~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTT-CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCC-CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 4999999999964 2367999999999999999999999999999999999999999999999872 135
Q ss_pred EEEcCCCCc-----ccccHHHHH---------------------------------------------------------
Q psy4347 561 AIVPQDPVL-----FHDTILYNI--------------------------------------------------------- 578 (816)
Q Consensus 561 ~~V~Q~~~L-----F~~Ti~eNi--------------------------------------------------------- 578 (816)
+||+|++.. +..|+++|+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 666665421 112333333
Q ss_pred ---------hcCCC-----------------------------------------CCCHHHHHHHHHHcCChhHHHhCCC
Q psy4347 579 ---------NYGDK-----------------------------------------SKSYEETIEAAKLADLHNSIIKWPN 608 (816)
Q Consensus 579 ---------~~~~~-----------------------------------------~~~~~~i~~a~~~a~l~~~I~~LP~ 608 (816)
.++.. ....+++.+.++..++.+...
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~---- 894 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV---- 894 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh----
Confidence 22110 112345555666666643210
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCe
Q psy4347 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGY 688 (816)
Q Consensus 609 GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~ 688 (816)
......+||||||||++|||||+.+|+||||||||++||+.+...+.+.|++. +.|+|+|||+++.+...+++
T Consensus 895 -----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~Dr 967 (986)
T 2iw3_A 895 -----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEE 967 (986)
T ss_dssp -----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCE
T ss_pred -----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCE
Confidence 11233689999999999999999999999999999999999999999999876 57999999999999876666
Q ss_pred EEEEcC
Q psy4347 689 KAHRKT 694 (816)
Q Consensus 689 i~~~g~ 694 (816)
|+...+
T Consensus 968 VivL~~ 973 (986)
T 2iw3_A 968 VWAVKD 973 (986)
T ss_dssp EECCBT
T ss_pred EEEEEC
Confidence 665543
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=323.87 Aligned_cols=190 Identities=24% Similarity=0.305 Sum_probs=154.7
Q ss_pred EeeEEEeCCCcccccceeeeEEeeCC-----cEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 485 RDVNFSYIDKHTKRIFSNLNFTIPAG-----KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 485 ~~vsf~Y~~~~~~~vL~~isl~i~~G-----e~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
++++|+|++ ...+++|+||++++| |++||+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 678899975 456899999999999 7899999999999999999999999999972 21 346
Q ss_pred cEEEcCCCC-cccccHHHHHhcCC--CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 560 IAIVPQDPV-LFHDTILYNINYGD--KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 560 i~~V~Q~~~-LF~~Ti~eNi~~~~--~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
++|+||+.. .|..|+++|+.... .....+.+.++++..++.+...+.| .+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----------~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV-----------QHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBS-----------SSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHHHH
Confidence 999999965 46889999986432 1234456667777777765543333 689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhc-c---------CeEEEEcChhHHhh
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTAS--RNKTTICIAHRLSTIKHL-L---------GYKAHRKTSTNLVR 700 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~-d---------g~i~~~g~~~~L~~ 700 (816)
.+|+||||||||++||+.+...+.+.|+++. .|.|+|+|||++..+... | |+++..|++++++.
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999999999999999998863 489999999999999874 4 45555555555554
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2e-32 Score=326.20 Aligned_cols=193 Identities=23% Similarity=0.307 Sum_probs=128.2
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHH---------------------HHHhcCCCCC-------cceEEECCEe
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTII---------------------RLLYRFFEPN-------AGAIYIDGKN 547 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~---------------------~ll~gl~~p~-------~G~I~idG~d 547 (816)
..++|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35799999999999999999999999999998 9999999999 5566677765
Q ss_pred CCCCChHHHhhccEEEcCCCCcc--------------------cccHHHHHhcCCC-CCC--HHHH-----------HHH
Q psy4347 548 INDVDLDSLRRHIAIVPQDPVLF--------------------HDTILYNINYGDK-SKS--YEET-----------IEA 593 (816)
Q Consensus 548 i~~~~~~~lr~~i~~V~Q~~~LF--------------------~~Ti~eNi~~~~~-~~~--~~~i-----------~~a 593 (816)
+.. ..++.+++|+|.+.++ ..|++||+.++.. ... +.+. .+.
T Consensus 110 ~~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 110 TSR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF 185 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred hhc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 533 2345677777765432 4589999987521 111 0111 111
Q ss_pred HHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCC
Q psy4347 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP--ILVFDEATSSLDSITENNILSSLKTAS-RNK 670 (816)
Q Consensus 594 ~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~--iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~ 670 (816)
++..++.+.. .|. ...+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|.
T Consensus 186 l~~~gL~~~~------~~~----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~ 255 (670)
T 3ux8_A 186 LQNVGLDYLT------LSR----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN 255 (670)
T ss_dssp HHHTTCTTCC------TTC----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTC
T ss_pred HHHcCCchhh------hcC----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCC
Confidence 2233332210 122 335799999999999999999998 999999999999999999999998864 589
Q ss_pred EEEEEecChhHHHhcc-------------CeEEEEcChhHHhhcC
Q psy4347 671 TTICIAHRLSTIKHLL-------------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 671 T~i~IaHrls~i~~~d-------------g~i~~~g~~~~L~~~~ 702 (816)
|+|+|||+++.+..|| |++++.|+.+++.+..
T Consensus 256 tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 256 TLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp EEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred EEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCc
Confidence 9999999999888766 7888899999887654
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=6.3e-31 Score=319.85 Aligned_cols=191 Identities=23% Similarity=0.284 Sum_probs=158.2
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
..|...|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+| |+| +|.+... +..
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999964 579999999999999999999999999999999996 654 6654421 123
Q ss_pred cEEEcCCC-Ccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCCh-hHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 560 IAIVPQDP-VLF-HDTILYNINYGDKSKSYEETIEAAKLADLH-NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 560 i~~V~Q~~-~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~-~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
++|++|++ .++ ..|+.||+.+..... .+++.++++..++. +...+.+ .+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 78999985 455 569999998621112 67888999999984 4444333 579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh-cc-------CeEE-EEcChhHHhhc
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH-LL-------GYKA-HRKTSTNLVRG 701 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~-~d-------g~i~-~~g~~~~L~~~ 701 (816)
.+|+||||||||++||+.+...+.+.|++ .|+|+|+|||++..+.. || |+++ ..|+.+++.+.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 99999999999999999999999999988 58999999999999976 45 8886 47888887653
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=4.2e-32 Score=323.47 Aligned_cols=198 Identities=24% Similarity=0.305 Sum_probs=146.4
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh---------------------cCCCCCcceEEECCEeCCCCChH
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY---------------------RFFEPNAGAIYIDGKNINDVDLD 554 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~---------------------gl~~p~~G~I~idG~di~~~~~~ 554 (816)
..++|+||||+|++||++||+||||||||||+++|+ +-+.+.+|.|.++|.++...+..
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTC
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCc
Confidence 356899999999999999999999999999998764 12234457899999988654321
Q ss_pred HHhh-----------------------------------------ccEEEcCCCCcc-----------------------
Q psy4347 555 SLRR-----------------------------------------HIAIVPQDPVLF----------------------- 570 (816)
Q Consensus 555 ~lr~-----------------------------------------~i~~V~Q~~~LF----------------------- 570 (816)
..+. ..|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1110 123333332221
Q ss_pred ----------cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC-
Q psy4347 571 ----------HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT- 639 (816)
Q Consensus 571 ----------~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p- 639 (816)
..|++||+.+.......++..++++..++.+ ...+....+|||||||||+|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 3589999988754323344555555555421 1234556789999999999999999887
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-------------CeEEEEcChhHHhhcCc
Q psy4347 640 --PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL-------------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 640 --~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------------g~i~~~g~~~~L~~~~~ 703 (816)
+||||||||++||+.+...|.+.|+++. +|+|+|+|||+++.+..|| |+|++.|+++++.+...
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~ 643 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 643 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCc
Confidence 5999999999999999999999998864 4899999999999988766 89999999999976543
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-31 Score=314.72 Aligned_cols=192 Identities=28% Similarity=0.358 Sum_probs=149.9
Q ss_pred eeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceE-----------EECCEeCCCCChH
Q psy4347 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI-----------YIDGKNINDVDLD 554 (816)
Q Consensus 486 ~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I-----------~idG~di~~~~~~ 554 (816)
|++++|+. ....|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 56889965 345777777 699999999999999999999999999999999998 3445444333223
Q ss_pred HHhhccE--EEcCCCCc----cc---ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 555 SLRRHIA--IVPQDPVL----FH---DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 555 ~lr~~i~--~V~Q~~~L----F~---~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
.+++.+. +.+|.... +. .++.+++..... ...+++.++++..++.+...+.| .+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME-KSPEDVKRYIKILQLENVLKRDI-----------EKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC-SCHHHHHHHHHHHTCTGGGGSCT-----------TTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh-hHHHHHHHHHHHcCCcchhCCCh-----------HHCCHHH
Confidence 3344433 33443221 11 267777765432 34578888999998877655444 6899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhccCeEEEE
Q psy4347 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|||++|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+....++|+..
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999875 4799999999999999877777655
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=5.3e-32 Score=314.19 Aligned_cols=189 Identities=23% Similarity=0.310 Sum_probs=149.4
Q ss_pred eeEEEeCCCcccccceeeeEEee-CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceE-----------EECCEeCCCCCh
Q psy4347 486 DVNFSYIDKHTKRIFSNLNFTIP-AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI-----------YIDGKNINDVDL 553 (816)
Q Consensus 486 ~vsf~Y~~~~~~~vL~~isl~i~-~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I-----------~idG~di~~~~~ 553 (816)
+++.+|+. + -++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~--~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKV--N--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESST--T--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCC--C--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 56788965 2 3555555555 899999999999999999999999999999999 678876643322
Q ss_pred HHH------hhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHH
Q psy4347 554 DSL------RRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627 (816)
Q Consensus 554 ~~l------r~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQ 627 (816)
... ...+.+++|.+.++.+|+++++..... .+.+.++++..++.+... ..+ .+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l~l~~~~~-------~~~----~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELLNMTNLWN-------KDA----NILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHTTCGGGTT-------SBG----GGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHcCCchhhc-------CCh----hhCCHHHHH
Confidence 211 223445555666778899998864332 235667777788765432 223 579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEE
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~ 692 (816)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+..++++|+..
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl 210 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII 210 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEe
Confidence 99999999999999999999999999999999999999877999999999999999888777654
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.1e-30 Score=317.16 Aligned_cols=197 Identities=27% Similarity=0.410 Sum_probs=152.2
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHH---------HHHhcCCCCC------cc------eEEECCEeCCCCCh--
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTII---------RLLYRFFEPN------AG------AIYIDGKNINDVDL-- 553 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~---------~ll~gl~~p~------~G------~I~idG~di~~~~~-- 553 (816)
...|+||||+|++|++++|+|+||||||||+ +++.+...+. +| .|.+|+.++.....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 4454444333 33 36666666543211
Q ss_pred --------HHHh-------------------------------hccEEEcCCCCcc------------------------
Q psy4347 554 --------DSLR-------------------------------RHIAIVPQDPVLF------------------------ 570 (816)
Q Consensus 554 --------~~lr-------------------------------~~i~~V~Q~~~LF------------------------ 570 (816)
+.+| +..|+++|+..++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 1111 2356777776544
Q ss_pred ---------cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC--
Q psy4347 571 ---------HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT-- 639 (816)
Q Consensus 571 ---------~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p-- 639 (816)
..|+.||+.+.......++..++++..|+ || ..+|+.+.+|||||||||+|||||+++|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 34788888877543334555666666665 22 3468888999999999999999999876
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-------------CeEEEEcChhHHhhcCc
Q psy4347 640 -PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL-------------GYKAHRKTSTNLVRGNS 703 (816)
Q Consensus 640 -~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------------g~i~~~g~~~~L~~~~~ 703 (816)
+||||||||++||+.+++.+++.|+++. +|+|+|+|+|+++.++.|| |+|++.|+++++++..+
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCc
Confidence 7999999999999999999999998874 5899999999999999988 89999999999998754
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=2.2e-29 Score=282.32 Aligned_cols=193 Identities=16% Similarity=0.213 Sum_probs=144.5
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC--------------------------------------CCcc
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--------------------------------------PNAG 539 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~--------------------------------------p~~G 539 (816)
.+++++||++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999976663 5588
Q ss_pred eEEECCEeCCCCChHHHhhc-cEEEcCCCCcccccHHHHHhcCCCCCCH-------------------------------
Q psy4347 540 AIYIDGKNINDVDLDSLRRH-IAIVPQDPVLFHDTILYNINYGDKSKSY------------------------------- 587 (816)
Q Consensus 540 ~I~idG~di~~~~~~~lr~~-i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~------------------------------- 587 (816)
++++||.+++..+...+... +++++|++.++-.+..++..+-+.....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999987667777766 8999999988866655554443221110
Q ss_pred -----------------------------------HHHHHHHHHcCChh--HHHh-------CCCCccc---cccCCCCC
Q psy4347 588 -----------------------------------EETIEAAKLADLHN--SIIK-------WPNHYET---QVGERGLK 620 (816)
Q Consensus 588 -----------------------------------~~i~~a~~~a~l~~--~I~~-------LP~GydT---~VGE~G~~ 620 (816)
+.+.+.++..++.+ +... -+.|++. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 11111222222211 0000 0224443 45555555
Q ss_pred --------CChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEE
Q psy4347 621 --------LSGGEKQRVAIARAILKNT--PILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 621 --------LSGGqrQRiaiARAll~~p--~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
||||||||++|||||+.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..|| +++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d-~i~ 366 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAH-HHY 366 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCS-EEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcC-eEE
Confidence 8999999999999999999 99999999999999999999999999888899999999998887665 444
Q ss_pred EE
Q psy4347 691 HR 692 (816)
Q Consensus 691 ~~ 692 (816)
..
T Consensus 367 ~l 368 (415)
T 4aby_A 367 KV 368 (415)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=1.7e-28 Score=295.97 Aligned_cols=205 Identities=22% Similarity=0.367 Sum_probs=148.8
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHH-HhcCC-------CC---------------
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRL-LYRFF-------EP--------------- 536 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~l-l~gl~-------~p--------------- 536 (816)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |+|++ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999975 25999999999999999999999999999996 66553 22
Q ss_pred ---Ccc-------eEEECCEeCCCCCh----------HHHhhccEEEc---------CC---------------------
Q psy4347 537 ---NAG-------AIYIDGKNINDVDL----------DSLRRHIAIVP---------QD--------------------- 566 (816)
Q Consensus 537 ---~~G-------~I~idG~di~~~~~----------~~lr~~i~~V~---------Q~--------------------- 566 (816)
.+| .|.+||.++..-+. +.+|+.++++| +.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999998864322 33444333222 11
Q ss_pred -CCc------------------------c-cccHHHHHh--------cCCCCCCHHHHHHHHHHcCChhHHHhCCCCccc
Q psy4347 567 -PVL------------------------F-HDTILYNIN--------YGDKSKSYEETIEAAKLADLHNSIIKWPNHYET 612 (816)
Q Consensus 567 -~~L------------------------F-~~Ti~eNi~--------~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT 612 (816)
-.+ + ..||.||+. +.......+++.++++..++. +.
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~---------~~- 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLG---------YL- 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCT---------TS-
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCC---------cc-
Confidence 111 1 125555553 332211122334444444442 21
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhcc--
Q psy4347 613 QVGERGLKLSGGEKQRVAIARAILKN---TPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLL-- 686 (816)
Q Consensus 613 ~VGE~G~~LSGGqrQRiaiARAll~~---p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~d-- 686 (816)
.++....+|||||||||+|||||+++ |+||||||||++||+.+...+.+.|+++ .+|.|+|+|||+++.+..||
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 34666789999999999999999996 7999999999999999999999999886 45899999999999997776
Q ss_pred -----------CeEEEEcChhHHhhcC
Q psy4347 687 -----------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 687 -----------g~i~~~g~~~~L~~~~ 702 (816)
|+|+..|+++++.+..
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 5888888888887654
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-32 Score=308.23 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=135.6
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc-e-EEECCEeCCCCChHHHh
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG-A-IYIDGKNINDVDLDSLR 557 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G-~-I~idG~di~~~~~~~lr 557 (816)
+.|+++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| | .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 4588899999882 69999999999999999999999999999999999999 9 99999 2 37
Q ss_pred hccEEEcCCCCccc----ccHHHHHhcCCCC---C-CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 558 RHIAIVPQDPVLFH----DTILYNINYGDKS---K-SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~----~Ti~eNi~~~~~~---~-~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
+.+++|||++.+|. .|++||+ ++... . ..+++.++++..| ++.... ..+||||||||+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~--~~~LSgGq~qrl 244 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFG-----------LERINE--NKDLYLECISQL 244 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCC-----------SSSGGG--CHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhC-----------CCcccc--hhhhhHHHHHHH
Confidence 88999999997653 4899999 76321 1 1122233333333 333332 578999999999
Q ss_pred HHHHH--hccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 630 AIARA--ILKNTPI----LVFDE-ATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 630 aiARA--ll~~p~i----LiLDE-~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
+|||| |+.+|++ ||||| ||++||+. ...+.+.+++. ++|+|+|+|+.+
T Consensus 245 alAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~ 299 (460)
T 2npi_A 245 GQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSET 299 (460)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSS
T ss_pred HHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCc
Confidence 99999 9999999 99999 99999999 77777777765 789999999987
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=5.2e-28 Score=292.37 Aligned_cols=204 Identities=24% Similarity=0.321 Sum_probs=150.6
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh-cC----C---CCCcc-------------
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY-RF----F---EPNAG------------- 539 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~-gl----~---~p~~G------------- 539 (816)
.|+++|++. .+|+||||+|++||++||+|+||||||||+++|+ |. + .|..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588998852 3699999999999999999999999999999854 21 1 12333
Q ss_pred eEEECCEeCCCCC---hH-------HHh---------hccEEEcCCCCc---------------------c---------
Q psy4347 540 AIYIDGKNINDVD---LD-------SLR---------RHIAIVPQDPVL---------------------F--------- 570 (816)
Q Consensus 540 ~I~idG~di~~~~---~~-------~lr---------~~i~~V~Q~~~L---------------------F--------- 570 (816)
.|.+||.++..-. +. .+| +.+||++|...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885321 11 122 346888885322 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccc-cccCCCCCCChh
Q psy4347 571 -------------------------HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYET-QVGERGLKLSGG 624 (816)
Q Consensus 571 -------------------------~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT-~VGE~G~~LSGG 624 (816)
..|+.||+.++......+++.++++..++ +. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL-----------~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGL-----------GYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTC-----------SSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCC-----------CcccccCchhhCCHH
Confidence 22566666665321111223334444433 33 456666899999
Q ss_pred HHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-------------C
Q psy4347 625 EKQRVAIARAILKNT---PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL-------------G 687 (816)
Q Consensus 625 qrQRiaiARAll~~p---~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------------g 687 (816)
|||||+|||||+++| +||||||||++||+.+...+.+.|+++. +|.|+|+|||++..+..|| |
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998864 5899999999999998776 7
Q ss_pred eEEEEcChhHHhhcCc
Q psy4347 688 YKAHRKTSTNLVRGNS 703 (816)
Q Consensus 688 ~i~~~g~~~~L~~~~~ 703 (816)
+|+..|+++++.+...
T Consensus 930 ~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 930 QIVAVGTPEEVAEVKE 945 (972)
T ss_dssp SEEEEESHHHHHTCTT
T ss_pred EEEEecCHHHHHhCch
Confidence 8999999999987544
No 66
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.1e-27 Score=261.15 Aligned_cols=196 Identities=22% Similarity=0.242 Sum_probs=141.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC---------------------------
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--------------------------- 533 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl--------------------------- 533 (816)
.|+++| -.+|. ++++|++.+| +++|+||||||||||++.|..+
T Consensus 5 ~L~i~n-fr~~~--------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKG-FKSFG--------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEES-BTTBC--------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCC
T ss_pred EEEEeC-ceeec--------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCC
Confidence 477777 23442 2578889999 9999999999999999999844
Q ss_pred -----------------------CCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc-cccHHHHHhcCCCC-----
Q psy4347 534 -----------------------FEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKS----- 584 (816)
Q Consensus 534 -----------------------~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~~----- 584 (816)
+.+.+|.+.+||.+++..+...+...+++.||+..++ .|+|.+|+......
T Consensus 75 ~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~l 154 (322)
T 1e69_A 75 AGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLES 154 (322)
T ss_dssp CSEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------
T ss_pred CceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHH
Confidence 3455689999999986556667777899999998776 89999999753210
Q ss_pred ----------CCHHHHHHHHHHc------------CC-hhHHHhCCCCccccccC------CCCCCChhHHHHHHHHHHh
Q psy4347 585 ----------KSYEETIEAAKLA------------DL-HNSIIKWPNHYETQVGE------RGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 585 ----------~~~~~i~~a~~~a------------~l-~~~I~~LP~GydT~VGE------~G~~LSGGqrQRiaiARAl 635 (816)
.+.+++.+..... .+ .+....++.|+++.+++ ....||||||||++|||||
T Consensus 155 d~~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l 234 (322)
T 1e69_A 155 SKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLF 234 (322)
T ss_dssp ------------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHH
Confidence 0111222221110 01 11123466788876543 3468999999999999999
Q ss_pred c----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 636 L----KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 636 l----~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
+ ++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+..||
T Consensus 235 ~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d 289 (322)
T 1e69_A 235 ALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAAD 289 (322)
T ss_dssp HHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCS
T ss_pred HHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCc
Confidence 6 78999999999999999999999999999877899999999988777666
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=1.6e-27 Score=289.10 Aligned_cols=204 Identities=21% Similarity=0.294 Sum_probs=147.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh-----cCCC---CCcce-----------
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY-----RFFE---PNAGA----------- 540 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~-----gl~~---p~~G~----------- 540 (816)
..|+++|++. .+|+||||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999852 3699999999999999999999999999999853 2222 23443
Q ss_pred --EEECCEeCCCC---ChH-------HHh---------hccEEEcCCCCc---------------------c--------
Q psy4347 541 --IYIDGKNINDV---DLD-------SLR---------RHIAIVPQDPVL---------------------F-------- 570 (816)
Q Consensus 541 --I~idG~di~~~---~~~-------~lr---------~~i~~V~Q~~~L---------------------F-------- 570 (816)
|.+||.++..- ++. .+| +.+||++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 56666666321 111 122 346788775321 0
Q ss_pred --------------------------cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccc-cccCCCCCCCh
Q psy4347 571 --------------------------HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYET-QVGERGLKLSG 623 (816)
Q Consensus 571 --------------------------~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT-~VGE~G~~LSG 623 (816)
..|+.||+.++......+++.++++.. |++. .++....+|||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~l-----------gL~~~~l~~~~~~LSG 866 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDV-----------GLGYVRLGQPAPTLSG 866 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHT-----------TGGGSBTTCCGGGSCH
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHc-----------CCCcccccCccccCCH
Confidence 124555665543211112223333333 3333 45677789999
Q ss_pred hHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-------------
Q psy4347 624 GEKQRVAIARAILKNT---PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL------------- 686 (816)
Q Consensus 624 GqrQRiaiARAll~~p---~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d------------- 686 (816)
||||||+|||||+++| +||||||||++||+.+...+.+.|+++. +|.|+|+|||++..+..||
T Consensus 867 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCC
Confidence 9999999999999875 9999999999999999999999998864 5899999999999998776
Q ss_pred CeEEEEcChhHHhhcC
Q psy4347 687 GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 687 g~i~~~g~~~~L~~~~ 702 (816)
|+|+..|+++++.+..
T Consensus 947 G~Iv~~G~~~el~~~~ 962 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAVP 962 (993)
T ss_dssp SEEEEEECHHHHHHCT
T ss_pred CEEEEecCHHHHHhCC
Confidence 6888888988887654
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=1.4e-29 Score=260.04 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=102.0
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILY 576 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~e 576 (816)
+++|+|| ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.||||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 5789995 89999999999999999999999999 99999994 334431 2234678899999997 56
Q ss_pred HH-hcCCCC-------CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q psy4347 577 NI-NYGDKS-------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648 (816)
Q Consensus 577 Ni-~~~~~~-------~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~T 648 (816)
|+ .++.+. ...+++.++ +.. | | |||||++|||||+.+|++|||||||
T Consensus 78 nl~~~~~~~~~~~~~~~~~~~~~~~---------l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPt 132 (208)
T 3b85_A 78 KIDPYLRPLHDALRDMVEPEVIPKL---------MEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp --CTTTHHHHHHHTTTSCTTHHHHH---------HHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHH---------HHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCc
Confidence 66 343110 011112222 111 1 1 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHh
Q psy4347 649 SSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684 (816)
Q Consensus 649 s~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~ 684 (816)
|+ +...+.+.|+++.+++|+| |||+++.+..
T Consensus 133 s~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 133 NT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp GC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred cc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 99 8888999998875578998 9999987764
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=4.8e-27 Score=233.00 Aligned_cols=147 Identities=17% Similarity=0.224 Sum_probs=108.0
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCC--cccccHHHHHh
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPV--LFHDTILYNIN 579 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~--LF~~Ti~eNi~ 579 (816)
||||++++||+++|+||||||||||++++.+ |... ++.+.+| ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2221 2233344 67888763 34455444432
Q ss_pred cCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH---
Q psy4347 580 YGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITE--- 656 (816)
Q Consensus 580 ~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te--- 656 (816)
. ..+ ..+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ~---------~~~-----------~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y---------IVS-----------KRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H---------HHH-----------HHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H---------HHH-----------HHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 111 11233555555543 34599999999999999999999999999999999954
Q ss_pred -------------HHHHHHHHHh-cCCCEEEEEecChhHHHhcc
Q psy4347 657 -------------NNILSSLKTA-SRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 657 -------------~~i~~~l~~~-~~~~T~i~IaHrls~i~~~d 686 (816)
..+.+.|+++ .+|.|+|+|||+++.+..++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~ 166 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVV 166 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhh
Confidence 7777776654 24899999999999987763
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=1.1e-28 Score=270.25 Aligned_cols=197 Identities=13% Similarity=0.194 Sum_probs=145.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCccEE---------
Q psy4347 414 NLTVGDLVMVNGLLFQLSMPLGFLGS-VYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIE--------- 483 (816)
Q Consensus 414 ~ltvG~lvaf~~~~~~l~~pl~~L~~-~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~--------- 483 (816)
.+|.|++.+++.++..+..| .+.. ....++.+..+.+|+.++++.|... +........ ....+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~ir-~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISIR-IPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEEE-CCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEEe-CCCCCCCCHHHHHhCCC
Confidence 69999999999988877665 3333 3333444445567888877644321 110000000 00123456
Q ss_pred EEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEE
Q psy4347 484 FRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563 (816)
Q Consensus 484 ~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V 563 (816)
|++|+| | .++++++||+|++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 778888 7 258999999999999999999999999999999999999999999999975 33333456667766
Q ss_pred cCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q psy4347 564 PQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILV 643 (816)
Q Consensus 564 ~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLi 643 (816)
+| |||+||++|||||..+|++||
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 40 899999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCC-EEEEEecChhHHHhcc
Q psy4347 644 FDEATSSLDSITENNILSSLKTASRNK-TTICIAHRLSTIKHLL 686 (816)
Q Consensus 644 LDE~Ts~LD~~te~~i~~~l~~~~~~~-T~i~IaHrls~i~~~d 686 (816)
|||||+. ++.+.|+.+..|+ |+|+++|+++....+|
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~d 282 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFI 282 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHH
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhh
Confidence 9999992 3456666665665 7999999999776664
No 71
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.92 E-value=2.2e-28 Score=252.22 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=110.2
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhccEEEcCCCCcccc----
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRHIAIVPQDPVLFHD---- 572 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~i~~V~Q~~~LF~~---- 572 (816)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 888765433 3357789999999877643
Q ss_pred -------cHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHH-----HHHhccCCC
Q psy4347 573 -------TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI-----ARAILKNTP 640 (816)
Q Consensus 573 -------Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai-----ARAll~~p~ 640 (816)
++.+| .+|.+ .+++.++++.... ..++ .+|||||+||++| ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 33344 33432 3456666554321 1222 5799999999999 999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCE
Q psy4347 641 ILVFDEATSSLDSITENNILSSLKTASRNKT 671 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T 671 (816)
+++|||||+++|.+++..|.+.+.+..+++|
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~ 178 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH 178 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654444
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=5.4e-26 Score=227.70 Aligned_cols=145 Identities=13% Similarity=0.148 Sum_probs=108.6
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHH
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETI 591 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~ 591 (816)
+++|+||||||||||+++|+|++. |.++|.+..+......++.+||++|++ +..+|+ ++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999995 677887764443224678999999987 222232 1100
Q ss_pred HHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q psy4347 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA-----ILKNTPILVFDE--ATSSLDSITENNILSSLK 664 (816)
Q Consensus 592 ~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA-----ll~~p~iLiLDE--~Ts~LD~~te~~i~~~l~ 664 (816)
+ .+ .+..++..+.+||||||||++|||| ++.+|++||||| ||++||+...+.+.+.++
T Consensus 63 ------~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 ------F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp ------T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred ------c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 01 1145677778999999999999996 999999999999 999999999999999987
Q ss_pred HhcCCCEEEEEec---ChhHHHhc-c---CeEEEE
Q psy4347 665 TASRNKTTICIAH---RLSTIKHL-L---GYKAHR 692 (816)
Q Consensus 665 ~~~~~~T~i~IaH---rls~i~~~-d---g~i~~~ 692 (816)
+ .+.|+|+++| +...+... | |+|++.
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~ 160 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIEL 160 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEEC
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEe
Confidence 6 4677999985 66776553 2 788873
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=6e-26 Score=254.98 Aligned_cols=164 Identities=16% Similarity=0.196 Sum_probs=132.4
Q ss_pred cccceeeeEEeeCCc--------------------EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHH
Q psy4347 497 KRIFSNLNFTIPAGK--------------------SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge--------------------~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~l 556 (816)
+.+|+||||+|++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998763
Q ss_pred hhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh--HHHHHHHHHH
Q psy4347 557 RRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG--EKQRVAIARA 634 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG--qrQRiaiARA 634 (816)
| .++++|++...+.|+.||+.++.+. +.+.+.++..++.+. +..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHHH
Confidence 1 2789999754477999999887542 345666666665432 2222 2 8999 9999999999
Q ss_pred hcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------C----CCEEEEEecChhH--HHhc
Q psy4347 635 ILK----------NTPILVFDEATSSLDSITENNILSSLKTAS------R----NKTTICIAHRLST--IKHL 685 (816)
Q Consensus 635 ll~----------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~------~----~~T~i~IaHrls~--i~~~ 685 (816)
|.+ +|++++|||||++||+.++..+.+.|+++. . ..++++.||.++. +...
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L 243 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVL 243 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHH
Confidence 999 999999999999999999999998887752 1 2567788999876 5543
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.88 E-value=4.6e-25 Score=250.07 Aligned_cols=189 Identities=13% Similarity=0.137 Sum_probs=150.8
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCE---eCCCCC----
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK---NINDVD---- 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~---di~~~~---- 552 (816)
..++++||++.|+. +.++|+++ |+|++||+++|+||||||||||+++|+|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46899999999964 46799999 999999999999999999999999999999999999999998 565432
Q ss_pred -hHHHhhccEEEcCC-CCcc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 553 -LDSLRRHIAIVPQD-PVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 553 -~~~lr~~i~~V~Q~-~~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
...+++.|+||+|+ ..++ ..|+.+|+.+.. +.... +...+.+++ +...+||||| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~~~~v~~~l------------d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-RGQHVLLIM------------DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-TTCEEEEEE------------ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-CCCCHHHHH------------HhHHHHHHHH-HHH
Confidence 35688899999995 4444 679999997631 11110 011111111 2246799999 999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----CC-----EEEEEecChhHHHhcc-------CeEEEE
Q psy4347 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-----NK-----TTICIAHRLSTIKHLL-------GYKAHR 692 (816)
Q Consensus 630 aiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-----~~-----T~i~IaHrls~i~~~d-------g~i~~~ 692 (816)
+|| +.+|++ |++||+.+...+.+.++++.+ |+ |++++||+++ ...|| |+|+..
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 899998 999999999999999988754 54 9999999996 33344 999999
Q ss_pred cChhHHhhc
Q psy4347 693 KTSTNLVRG 701 (816)
Q Consensus 693 g~~~~L~~~ 701 (816)
|++.++...
T Consensus 337 ~~~~~~~~~ 345 (438)
T 2dpy_A 337 RRLAEAGHY 345 (438)
T ss_dssp HHHHHTTCS
T ss_pred CCHHHccCC
Confidence 999988653
No 75
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.88 E-value=8.3e-26 Score=245.62 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=134.3
Q ss_pred HHHHHHHHHhhccCccccccccCCccccCCCCccEEEEeeEEEeCCCcccccceeeeEE---------------------
Q psy4347 448 FIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFT--------------------- 506 (816)
Q Consensus 448 ~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~--------------------- 506 (816)
..++.++.+.+..+.+..+.. .+....+.|+++||++.|. |+++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~~~~-----~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEELV-----GLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQN 84 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHHHH-----TTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHhcCCCCCCHHHHH-----hccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccc
Confidence 345556655555443322111 1112355799999999993 467777765
Q ss_pred --eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC--
Q psy4347 507 --IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD-- 582 (816)
Q Consensus 507 --i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~-- 582 (816)
+++|+++||+||||||||||+++|.|+++|+.|. +.+++|+||+++|..|++||+.+..
T Consensus 85 ~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~ 147 (312)
T 3aez_A 85 PDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRK 147 (312)
T ss_dssp SSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCT
T ss_pred cCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhc
Confidence 8999999999999999999999999999998764 4699999999999889999997632
Q ss_pred --CCC-CHHHHHHHHHHcCChhHHHhCCCCcc-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHH
Q psy4347 583 --KSK-SYEETIEAAKLADLHNSIIKWPNHYE-TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENN 658 (816)
Q Consensus 583 --~~~-~~~~i~~a~~~a~l~~~I~~LP~Gyd-T~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~ 658 (816)
|.. +.+.+.+. +..+..|+. ..+ ..|||||+||+++|||++.+|+|||||||++.+|+..
T Consensus 148 g~~~~~d~~~~~~~---------L~~l~~~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--- 211 (312)
T 3aez_A 148 GFPESYNRRALMRF---------VTSVKSGSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--- 211 (312)
T ss_dssp TSGGGBCHHHHHHH---------HHHHHTTCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS---
T ss_pred CCChHHHHHHHHHH---------HHHhCCCcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch---
Confidence 211 22333333 333334443 333 4799999999999999999999999999999998621
Q ss_pred HHHHHHHhcCCCEEEEEecChhHH
Q psy4347 659 ILSSLKTASRNKTTICIAHRLSTI 682 (816)
Q Consensus 659 i~~~l~~~~~~~T~i~IaHrls~i 682 (816)
..+.+.. ..+|+|+|..+..
T Consensus 212 --~~l~~~~--D~~I~V~a~~~~~ 231 (312)
T 3aez_A 212 --LMVSDLF--DFSLYVDARIEDI 231 (312)
T ss_dssp --CCGGGGC--SEEEEEEECHHHH
T ss_pred --HHHHHhc--CcEEEEECCHHHH
Confidence 1233332 3568888877654
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=2e-24 Score=233.82 Aligned_cols=176 Identities=13% Similarity=0.141 Sum_probs=126.6
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHH--hhccEEEcCCCC-cc-c
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD----LDSL--RRHIAIVPQDPV-LF-H 571 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~----~~~l--r~~i~~V~Q~~~-LF-~ 571 (816)
++++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999986643 1233 457999999998 77 5
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCCC
Q psy4347 572 DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP--ILVFDEATS 649 (816)
Q Consensus 572 ~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~--iLiLDE~Ts 649 (816)
.|++||+.++.....+ ...++.+|+.+.. +..+ .+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d---~~lldt~gl~~~~-------~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD---VVLCDTSGRLHTN-------YSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCS---EEEECCCCCSSCC-------HHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCc---chHHhcCCCCcch-------hHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 6999999865211000 0112233332221 1222 2488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEEecC---------hhHHHhccCeEEEEcChhH
Q psy4347 650 SLDSITENNILSSLKTASRNKTTICIAHR---------LSTIKHLLGYKAHRKTSTN 697 (816)
Q Consensus 650 ~LD~~te~~i~~~l~~~~~~~T~i~IaHr---------ls~i~~~dg~i~~~g~~~~ 697 (816)
+||+.+.. +.+.+ ..+.|+|++||- ++.+....-.|...|+++.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 22322 237999999992 3333333357777777654
No 77
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=1.3e-22 Score=225.01 Aligned_cols=70 Identities=30% Similarity=0.336 Sum_probs=64.0
Q ss_pred CCCCCChhHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc
Q psy4347 617 RGLKLSGGEKQRVAIARAIL------KNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 617 ~G~~LSGGqrQRiaiARAll------~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d 686 (816)
...+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+..||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 44579999999999999999 7999999999999999999999999999864 4799999999999977776
No 78
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.87 E-value=3.4e-26 Score=242.66 Aligned_cols=183 Identities=22% Similarity=0.213 Sum_probs=149.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-cceEEECCEeCCCCChHHHhhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDGKNINDVDLDSLRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-~G~I~idG~di~~~~~~~lr~~i 560 (816)
++++|++|. ++|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 455666542 4899999 9999999999999999999999999999998 999999999886542 4456
Q ss_pred EEEcC-----CCCcccccHHHHHhcCCCCC-------CHHHHHHHHHHcCCh----------------hHH---------
Q psy4347 561 AIVPQ-----DPVLFHDTILYNINYGDKSK-------SYEETIEAAKLADLH----------------NSI--------- 603 (816)
Q Consensus 561 ~~V~Q-----~~~LF~~Ti~eNi~~~~~~~-------~~~~i~~a~~~a~l~----------------~~I--------- 603 (816)
++|+| ++..|..+|+.+++. +|+. +.+.+..+++.+... +-+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~ 151 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQ 151 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCcccc
Confidence 78888 667788899999987 3443 666666655544211 111
Q ss_pred ----HhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHhcC
Q psy4347 604 ----IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI--LVFDEATSSLDSIT---------ENNILSSLKTASR 668 (816)
Q Consensus 604 ----~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i--LiLDE~Ts~LD~~t---------e~~i~~~l~~~~~ 668 (816)
..+|++|++.|++++..+||| ||++|||+++.+|++ +|+||+|+++|... +..++++++...+
T Consensus 152 ~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 229 (261)
T 2eyu_A 152 EQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQ 229 (261)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHT
T ss_pred chHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHc
Confidence 135679999999999999999 999999999999999 99999999999874 4567888888889
Q ss_pred CCEEEEEecChh
Q psy4347 669 NKTTICIAHRLS 680 (816)
Q Consensus 669 ~~T~i~IaHrls 680 (816)
|+|++.++||++
T Consensus 230 g~t~~~~a~r~~ 241 (261)
T 2eyu_A 230 GLITLEDAMEAS 241 (261)
T ss_dssp TSSCHHHHHHHC
T ss_pred CCCCHHHHHHHh
Confidence 999999999987
No 79
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.86 E-value=1.2e-24 Score=216.70 Aligned_cols=111 Identities=23% Similarity=0.259 Sum_probs=89.7
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCC---cceEEECCEeCCCCC---hHHHh-hccE----EEcCCCCcccccHHHHHh
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNINDVD---LDSLR-RHIA----IVPQDPVLFHDTILYNIN 579 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~---~G~I~idG~di~~~~---~~~lr-~~i~----~V~Q~~~LF~~Ti~eNi~ 579 (816)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| +++| +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999999 899999999988887 67888 5788 899999988 111
Q ss_pred cCCCCCCHHHHHHHHHHcCChhHHHh-CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q psy4347 580 YGDKSKSYEETIEAAKLADLHNSIIK-WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPIL 642 (816)
Q Consensus 580 ~~~~~~~~~~i~~a~~~a~l~~~I~~-LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iL 642 (816)
+ + +++ .++++++|.+ +| ||||.|+|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 222 7899999999 99 999999995 9999999999999999999874
No 80
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.86 E-value=2.5e-24 Score=229.39 Aligned_cols=148 Identities=16% Similarity=0.191 Sum_probs=98.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCccc-ccHHHHHhcCCCCC---CH
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH-DTILYNINYGDKSK---SY 587 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~~---~~ 587 (816)
++|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++|+|++.++. .||.||+.||.... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999998743 335678999999999885 49999999986422 22
Q ss_pred HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy4347 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667 (816)
Q Consensus 588 ~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~ 667 (816)
+.+.+..+ .++-..++ ..||||||||++||||++. +++|||||++||+.. ..+++.|.+
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~-- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK-- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT--
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh--
Confidence 34444433 23333333 3699999999999999886 999999999999987 334444433
Q ss_pred CCCEEEEEecChhHHHh
Q psy4347 668 RNKTTICIAHRLSTIKH 684 (816)
Q Consensus 668 ~~~T~i~IaHrls~i~~ 684 (816)
..++|+|.|+..++..
T Consensus 140 -~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 140 -VVNIIPVIAKADTMTL 155 (270)
T ss_dssp -TSEEEEEETTGGGSCH
T ss_pred -cCcEEEEEeccccCCH
Confidence 4899999999876643
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.86 E-value=1.5e-23 Score=231.59 Aligned_cols=175 Identities=13% Similarity=0.144 Sum_probs=128.2
Q ss_pred eeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHH--hhccEEEcCCCC-cc-cc
Q psy4347 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD----LDSL--RRHIAIVPQDPV-LF-HD 572 (816)
Q Consensus 501 ~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~----~~~l--r~~i~~V~Q~~~-LF-~~ 572 (816)
+.+||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999986542 1233 568999999987 66 56
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCCCC
Q psy4347 573 TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP--ILVFDEATSS 650 (816)
Q Consensus 573 Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~--iLiLDE~Ts~ 650 (816)
|++||+.++.....+. ..++.+|+.+... ..+ .+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl~~~~~-------~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGRLHTNY-------SLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCCSSCCH-------HHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCCChhhh-------hHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 9999998753110000 1122333322211 122 3488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEecC---------hhHHHhccCeEEEEcChhH
Q psy4347 651 LDSITENNILSSLKTASRNKTTICIAHR---------LSTIKHLLGYKAHRKTSTN 697 (816)
Q Consensus 651 LD~~te~~i~~~l~~~~~~~T~i~IaHr---------ls~i~~~dg~i~~~g~~~~ 697 (816)
||+.+... .+.+ ..+.|+|++||- ++.+....-.|...|+++.
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99987642 2322 237999999993 3333333357877777754
No 82
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.86 E-value=2.1e-25 Score=248.10 Aligned_cols=174 Identities=22% Similarity=0.201 Sum_probs=147.5
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-cceEEECCEeCCCCChHHHhhccEEEcC-----CCCccc
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDGKNINDVDLDSLRRHIAIVPQ-----DPVLFH 571 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-~G~I~idG~di~~~~~~~lr~~i~~V~Q-----~~~LF~ 571 (816)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++. + .++..+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677765 8999999999999999999999999999998 899988776664 2 36788999999 899999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHcCChhH----------------H-------------HhCCCCcccccc
Q psy4347 572 DTILYNINYGDKSK-------SYEETIEAAKLADLHNS----------------I-------------IKWPNHYETQVG 615 (816)
Q Consensus 572 ~Ti~eNi~~~~~~~-------~~~~i~~a~~~a~l~~~----------------I-------------~~LP~GydT~VG 615 (816)
++|++|+++ +|+. +.+.+..+++.++.... + ..+|++|++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999998 4655 77777777777654211 1 124779999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 616 ERGLKLSGGEKQRVAIARAILKNTPI--LVFDEATSSLDSI----T-----ENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 616 E~G~~LSGGqrQRiaiARAll~~p~i--LiLDE~Ts~LD~~----t-----e~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
+++..+||| ||++|||+++.+|+| +|+||+|++||.. + +..++++++...+|+|++.++||++
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 999999999 999999999999999 9999999999975 3 4467888888889999999999998
No 83
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.84 E-value=1e-25 Score=249.60 Aligned_cols=225 Identities=12% Similarity=0.054 Sum_probs=163.4
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccCCccccCCCCc
Q psy4347 402 SMIFAAREIAH-GNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNA 480 (816)
Q Consensus 402 vl~~G~~lV~~-G~ltvG~lvaf~~~~~~l~~pl~~L~~~~~~lq~a~~a~~RI~eiL~~~~e~~~~~~~~~~~~~~~~g 480 (816)
+.+.|++.+.. |.+|.|++.+|+.++..+..| .+......++.+..+.+|+.+++ +|+..+........ ....+
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir-~~~~~ 125 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIR-KPSFT 125 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEE-CCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEE-ecCCC
Confidence 44556666665 899999999999999888776 34443444444555677888887 33322111000000 00123
Q ss_pred cE---------EEEeeEEE---eCCCcccccc---------eeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc
Q psy4347 481 SI---------EFRDVNFS---YIDKHTKRIF---------SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539 (816)
Q Consensus 481 ~I---------~~~~vsf~---Y~~~~~~~vL---------~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G 539 (816)
.+ +|+||+|+ |++ .+.++| +++||+|++|+.++|+||||||||||+++|+|+++|++|
T Consensus 126 ~itl~~l~~~g~f~~v~f~~~~Y~~-~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 126 RRTLEDYAQQGFFKHVRPMSKSLTP-FEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp CCCHHHHHHTTTTSCCCCSCSCCCH-HHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred CCCHHHHHhcCCcCccccccccccc-hhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence 45 89999999 964 134566 999999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHHhhccEEEc-CCCCc---ccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCcccccc
Q psy4347 540 AIYIDGKNINDVDLDSLRRHIAIVP-QDPVL---FHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG 615 (816)
Q Consensus 540 ~I~idG~di~~~~~~~lr~~i~~V~-Q~~~L---F~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VG 615 (816)
.|.++|. .++.....|+.+++|+ |++.+ +..|+++||.++....++..+..+++.+.+++++..+|.|++|.++
T Consensus 205 ~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~ 282 (361)
T 2gza_A 205 LITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSIT 282 (361)
T ss_dssp EEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEE
T ss_pred EEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 9999985 4566666788999999 99876 7889999999875544444444445556677899999999999999
Q ss_pred CCCCCCChhHHHHHHHHHH
Q psy4347 616 ERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 616 E~G~~LSGGqrQRiaiARA 634 (816)
+-+.+-..+..+|++....
T Consensus 283 t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 283 SCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEECSSHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHh
Confidence 9888888999999987753
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.83 E-value=2.8e-23 Score=211.67 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=109.1
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHHhhccEEEcCCCCccc-cc
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSLRRHIAIVPQDPVLFH-DT 573 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~-~~lr~~i~~V~Q~~~LF~-~T 573 (816)
..++++| .+|++||+++|+||||||||||+++|+|+++ .|.+++. +...+. ...++.++|++|++.+|. .|
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCC-EESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEccc-ccccCCcccccCCCeeEecCHHHHHHHH
Confidence 3578898 7999999999999999999999999999995 3555542 222111 234678999999998884 47
Q ss_pred HHHHHhc-----CC-C--CCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH---HhccCCCEE
Q psy4347 574 ILYNINY-----GD-K--SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR---AILKNTPIL 642 (816)
Q Consensus 574 i~eNi~~-----~~-~--~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR---All~~p~iL 642 (816)
+.+|+.. ++ . ..+.+++.+.++.+. +.+. ...+.|.+.++-..++ ||+.+|+++
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~--~~~~-------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~ 145 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGV--PVLI-------------EVDLAGARAIKKTMPEAVTVFLAPPSWQ 145 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTC--CEEE-------------ECCHHHHHHHHHHCTTSEEEEEECSCHH
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCC--eEEE-------------EeCHHHHHHHHHhcCCcEEEEEECCCHH
Confidence 7777632 10 0 112334444333220 0000 0112233333332333 899999999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHHhc--CCCEEEEEecChhHHHhccCeEE
Q psy4347 643 VFDEATSSL----DSITENNILSSLKTAS--RNKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 643 iLDE~Ts~L----D~~te~~i~~~l~~~~--~~~T~i~IaHrls~i~~~dg~i~ 690 (816)
+|||||+++ |+...+.+.+.++++. .+.|+|+|||+++.+.....+|+
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~ 199 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL 199 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHH
Confidence 999999998 7889999999988864 37899999999999877544443
No 85
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.80 E-value=4.8e-22 Score=220.09 Aligned_cols=148 Identities=18% Similarity=0.293 Sum_probs=113.3
Q ss_pred cceeeeEEeeC--CcEEEEeCCCCCchhHHHHHHhcCCCCCc----ceEEE----CCEeCCCCChHHHhhccEEEcCCCC
Q psy4347 499 IFSNLNFTIPA--GKSVAIVGGSGSGKSTIIRLLYRFFEPNA----GAIYI----DGKNINDVDLDSLRRHIAIVPQDPV 568 (816)
Q Consensus 499 vL~~isl~i~~--Ge~vaivG~sGsGKSTl~~ll~gl~~p~~----G~I~i----dG~di~~~~~~~lr~~i~~V~Q~~~ 568 (816)
+.+.|+++|++ |++++|+||||||||||+++|+|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCC--ccccc-c-------CCCCCCChhHHHHHHHHHHh---
Q psy4347 569 LFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNH--YETQV-G-------ERGLKLSGGEKQRVAIARAI--- 635 (816)
Q Consensus 569 LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~G--ydT~V-G-------E~G~~LSGGqrQRiaiARAl--- 635 (816)
+|.+|++|||.+++.+..+..+.......+...++..++.+ ++..+ + ++|.++||||+||++|+|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999999987655555666666666667777777644 44422 3 66778899999999999998
Q ss_pred cc--CCCEEEEeCCC
Q psy4347 636 LK--NTPILVFDEAT 648 (816)
Q Consensus 636 l~--~p~iLiLDE~T 648 (816)
++ +++++++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 76 78999999986
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=1.4e-20 Score=207.33 Aligned_cols=190 Identities=13% Similarity=0.132 Sum_probs=140.0
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC-------CC
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND-------VD 552 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~-------~~ 552 (816)
..++.++|++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+++|+.|.|.++|.+.++ +.
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35889999999964 46799999 9999999999999999999999999999999999999999975322 12
Q ss_pred hHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccc-cCCCCCCChhHHHHHHH
Q psy4347 553 LDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQV-GERGLKLSGGEKQRVAI 631 (816)
Q Consensus 553 ~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~V-GE~G~~LSGGqrQRiai 631 (816)
...+++.+.+++|.+. +. .+++..+.....+.++... .|.|..+ -+.-.+||+|| ||+++
T Consensus 121 ~~~~~~~v~~~~~~~~----~~------------~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----PA------------LERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHHTTEEEEEECTTS----CH------------HHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhceEEEEECCCC----CH------------HHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 2334555666666421 11 2233333222233333222 2333211 13446899999 99999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCC-----EEEEEecChhHHHhcc-------CeEEEEcChh
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTAS---RNK-----TTICIAHRLSTIKHLL-------GYKAHRKTST 696 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~---~~~-----T~i~IaHrls~i~~~d-------g~i~~~g~~~ 696 (816)
| +.+|++ |++||+.....+.+.++++. +|. |++++||+++ -.-|| |+|+..|+.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 689988 99999999999999998875 366 8999999998 33344 9999999888
Q ss_pred HHhhc
Q psy4347 697 NLVRG 701 (816)
Q Consensus 697 ~L~~~ 701 (816)
++...
T Consensus 252 ~~~~~ 256 (347)
T 2obl_A 252 EENHF 256 (347)
T ss_dssp TTTCS
T ss_pred HcCCC
Confidence 87543
No 87
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.78 E-value=2.7e-19 Score=197.82 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCChhHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc----
Q psy4347 620 KLSGGEKQRVAIARAIL---------KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL---- 686 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll---------~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d---- 686 (816)
.|||||+||++|||+|+ .+|+|||||||||+||+.....+.+.|.++. .|+|++|| ++. .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998874 79999999 444 555
Q ss_pred ---CeEEEEcChhHHhh
Q psy4347 687 ---GYKAHRKTSTNLVR 700 (816)
Q Consensus 687 ---g~i~~~g~~~~L~~ 700 (816)
|+|++.|+++++.+
T Consensus 340 l~~G~i~~~g~~~~~~~ 356 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQAE 356 (359)
T ss_dssp EETTEEEECCCTTTSCT
T ss_pred EECCEEEecCCHHHHhc
Confidence 99999898887743
No 88
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.78 E-value=5.1e-21 Score=193.50 Aligned_cols=153 Identities=19% Similarity=0.198 Sum_probs=114.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHH
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEE 589 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~ 589 (816)
|++++|+||||||||||+++|+|+++ ++| |.+||.++.++. .+++.+|+++|+. +++ ++|+.......
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~---- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEP---- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccC----
Confidence 78999999999999999999999999 999 999999986543 5789999999986 332 23332110000
Q ss_pred HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q psy4347 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV-AIAR---AILKNTPILVFDE--ATSSLDSITENNILSSL 663 (816)
Q Consensus 590 i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi-aiAR---All~~p~iLiLDE--~Ts~LD~~te~~i~~~l 663 (816)
. +...+..+|+.|..+|||||+++ +++| |+..+|++||||| ||..+|....+.+.+.+
T Consensus 69 ----------~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 69 ----------P------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp ----------C------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred ----------C------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 0 11234589999999999999998 6666 7899999999999 89889998877777777
Q ss_pred HHhcCCCEEEE--E--ecCh--h---HHHhc-cCeEEEEc
Q psy4347 664 KTASRNKTTIC--I--AHRL--S---TIKHL-LGYKAHRK 693 (816)
Q Consensus 664 ~~~~~~~T~i~--I--aHrl--s---~i~~~-dg~i~~~g 693 (816)
+. ..|+|+ | +||. . -+... ||+|++..
T Consensus 133 ~~---~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCchHHHHHHeecCCcEEEEeC
Confidence 64 345553 3 4986 3 33333 38998754
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=1.9e-19 Score=222.17 Aligned_cols=155 Identities=13% Similarity=0.130 Sum_probs=114.4
Q ss_pred ccEEEEe-----eEEEeCCCcccccceeeeEEeeC-------CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEe
Q psy4347 480 ASIEFRD-----VNFSYIDKHTKRIFSNLNFTIPA-------GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN 547 (816)
Q Consensus 480 g~I~~~~-----vsf~Y~~~~~~~vL~~isl~i~~-------Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~d 547 (816)
+.|+++| |++.|++ +.+|++|++|++++ |++++|+|||||||||++|.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999953 46899999999988 999999999999999999999 99863
Q ss_pred CCCCChHHHhhccE-EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHH
Q psy4347 548 INDVDLDSLRRHIA-IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEK 626 (816)
Q Consensus 548 i~~~~~~~lr~~i~-~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqr 626 (816)
..++| ||||++. ..|+.|||.. + .++.|.+.. | -..+|+|++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-r--------------ig~~d~~~~---~--------~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-R--------------LGASDRIMS---G--------ESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-E--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-H--------------cCCHHHHhh---c--------hhhhHHHHH
Confidence 34677 9999873 5577777632 1 122222211 1 145777776
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhc-C-CCEEEEEecChhHHHhcc
Q psy4347 627 QRVAIARAILKNTPILVFDEATSSLDSITE-NNILSSLKTAS-R-NKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 627 QRiaiARAll~~p~iLiLDE~Ts~LD~~te-~~i~~~l~~~~-~-~~T~i~IaHrls~i~~~d 686 (816)
+ +++||+++.+|+++||||||+++|+... ..+.+.|+.+. + ++|+|++||.++.+...+
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC
Confidence 5 9999999999999999999999999884 44666677654 3 799999999999987744
No 90
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.77 E-value=2.5e-22 Score=203.79 Aligned_cols=160 Identities=18% Similarity=0.222 Sum_probs=125.4
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCC-------------CCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccH
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFE-------------PNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTI 574 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~-------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti 574 (816)
++|++++|+||||||||||+++|+|+|+ |..|+ +||.++..++.+.+++.+ +|++++|++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999996 88998 699999989999999887 69999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH-HhccCCCEEEEeCCCCCCCH
Q psy4347 575 LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR-AILKNTPILVFDEATSSLDS 653 (816)
Q Consensus 575 ~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR-All~~p~iLiLDE~Ts~LD~ 653 (816)
.+|+ ||. +.+++.++++.+...-+ .-.|+|+++.... ++ .|| +++++|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 774 56888888876533222 2357788876532 12 677 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEEEcChh
Q psy4347 654 ITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHRKTST 696 (816)
Q Consensus 654 ~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~~g~~~ 696 (816)
++|+.|++.|.+..++ +.++| ++ ..+ +.|+...+-+
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~-D~iivnd~le 175 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLF-DLVIINDDLD 175 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTC-SEEEECSSHH
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCc-eEEEECCCHH
Confidence 9999999999876544 35677 44 444 5666654433
No 91
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.77 E-value=1.1e-20 Score=197.49 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=100.3
Q ss_pred ccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHH
Q psy4347 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575 (816)
Q Consensus 496 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~ 575 (816)
+.++|+||||++++|+++||+||||||||||+++|.|++ |.+.+| ..++.+++|+|+++....|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 567999999999999999999999999999999999987 666554 367889999999733356999
Q ss_pred HHHhcCC-------CC-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCC
Q psy4347 576 YNINYGD-------KS-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647 (816)
Q Consensus 576 eNi~~~~-------~~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~ 647 (816)
+|+.+.. |. .+.+++.+.++. +..+.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 9986532 11 122333333322 223334443 4699999999998 699999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 648 TSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 648 Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
....|.. +.++ .+.|++++||...
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~ 166 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDV 166 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHH
Confidence 8887754 2233 3789999999743
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.76 E-value=1.1e-21 Score=199.24 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=114.2
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccc---cHHHHHhcC--
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD---TILYNINYG-- 581 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~---Ti~eNi~~~-- 581 (816)
.++|+++||+||||||||||+++|.|++.| .+++|+||++++.. |+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999975 58999999998843 677776543
Q ss_pred CCC-CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC-------CCH
Q psy4347 582 DKS-KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS-------LDS 653 (816)
Q Consensus 582 ~~~-~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~-------LD~ 653 (816)
.+. .+.+.+.++++..++.+++.. | +++...|+++. |+||+++||+++.+|+++++||||++ ||+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 332 345678888887777666654 4 55544444332 46899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHh--cCCCEEEEEecCh
Q psy4347 654 ITENNILSSLKTA--SRNKTTICIAHRL 679 (816)
Q Consensus 654 ~te~~i~~~l~~~--~~~~T~i~IaHrl 679 (816)
.++..+.+.+++. .+|+|++.++|+.
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999988764 3588999999984
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.75 E-value=2.8e-19 Score=191.63 Aligned_cols=165 Identities=12% Similarity=0.072 Sum_probs=111.8
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc-eEEECCEeCCCCChHHHhhccEEEcCCCCcccccHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG-AIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G-~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~ 575 (816)
.++|+++++.+++|++++|+||||||||||++.|++.+.|++| .|.+.+.+ .+...+++++..+.|+..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhc
Confidence 3579999999999999999999999999999999999999988 77665433 3566676666666555432 223
Q ss_pred HHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH-HHHHHHHHHhccCCCEEEEeCCCC---C-
Q psy4347 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE-KQRVAIARAILKNTPILVFDEATS---S- 650 (816)
Q Consensus 576 eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq-rQRiaiARAll~~p~iLiLDE~Ts---~- 650 (816)
+|+..+. .+.++..++++. .+...+-+ +.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 96 ~~l~~~~--~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 96 DSLKREI--IENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHHHH--HHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred cccccCC--CCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 3444321 112233332221 11111111 222224689998 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHhcC--CCEEEEEecCh
Q psy4347 651 --LDS-ITENNILSSLKTASR--NKTTICIAHRL 679 (816)
Q Consensus 651 --LD~-~te~~i~~~l~~~~~--~~T~i~IaHrl 679 (816)
+|. .....+.+.|+++.+ ++|+|+++|..
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 454 555678888877643 89999999995
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.75 E-value=9.8e-21 Score=219.46 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=111.6
Q ss_pred EeCCCcccccceeeeE-EeeCCcEEEEeCCCCCchhHHHHH--HhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCC
Q psy4347 490 SYIDKHTKRIFSNLNF-TIPAGKSVAIVGGSGSGKSTIIRL--LYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD 566 (816)
Q Consensus 490 ~Y~~~~~~~vL~~isl-~i~~Ge~vaivG~sGsGKSTl~~l--l~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~ 566 (816)
+|+. +.++|+|||| .|++|++++|+||||||||||+++ +.|+++|++|.|+++|.+. ..+....++.+|+++|+
T Consensus 20 ~~~~--g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 20 KMRT--MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAK 96 (525)
T ss_dssp EECC--CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHH
T ss_pred cccC--CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHH
Confidence 4544 5789999999 999999999999999999999999 7899999999999999873 22334556789999998
Q ss_pred CCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc-cCCCEEEEe
Q psy4347 567 PVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL-KNTPILVFD 645 (816)
Q Consensus 567 ~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll-~~p~iLiLD 645 (816)
+... +|+.+...... ++..++++..++.+ +.-.++++|- .+|++++||
T Consensus 97 ~~~~-----~~l~~~~~~~~-~~~~~~l~~~~l~~-------------------------~~~~~~~~LS~g~~~~lilD 145 (525)
T 1tf7_A 97 LVDE-----GKLFILDASPD-PEGQEVVGGFDLSA-------------------------LIERINYAIQKYRARRVSID 145 (525)
T ss_dssp HHHT-----TSEEEEECCCC-SSCCSCCSSHHHHH-------------------------HHHHHHHHHHHHTCSEEEEE
T ss_pred hhcc-----CcEEEEecCcc-cchhhhhcccCHHH-------------------------HHHHHHHHHHHcCCCEEEEC
Confidence 6521 12221111000 00000111111111 2333334442 468899999
Q ss_pred CCCCC-----CCHHHHHHHHHHHHHhc-CCCEEEEEecChhHH
Q psy4347 646 EATSS-----LDSITENNILSSLKTAS-RNKTTICIAHRLSTI 682 (816)
Q Consensus 646 E~Ts~-----LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i 682 (816)
|||+. ||+...+.+.+.++.+. .|+|+|+|+|+++.+
T Consensus 146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 146 SVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp CSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred CHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 99984 68999999999988764 489999999999874
No 95
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.75 E-value=3.7e-20 Score=186.71 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=106.4
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC-----CCCcceEEE-------CCEeCC
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF-----EPNAGAIYI-------DGKNIN 549 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~-----~p~~G~I~i-------dG~di~ 549 (816)
|+++||+|.|+ .+++++ |++++|.+++|+|+||||||||++.|+|.. .|+.|.+.+ ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999994 368888 999999999999999999999999999998 899998765 333332
Q ss_pred CCC-----------hHHHhhccEEEcCCCCcccc-cHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCC
Q psy4347 550 DVD-----------LDSLRRHIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617 (816)
Q Consensus 550 ~~~-----------~~~lr~~i~~V~Q~~~LF~~-Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~ 617 (816)
+.+ .+.+++.+++++|+...+++ ++..++..+.. ..++++.+.++..++ | .-.|+..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~-------~---~~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDSNI-------A---VLVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHTTC-------C---EEEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHHcCC-------C---eEEEEec
Confidence 211 13455556666654433332 33333333211 112344444433322 2 1123445
Q ss_pred CCCCChhHHHH-HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy4347 618 GLKLSGGEKQR-VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667 (816)
Q Consensus 618 G~~LSGGqrQR-iaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~ 667 (816)
-..+|+||||| +..||+++.+|+++++|||||++|......+.+.|.+..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 55799999999 899999999999999999999999999999999987753
No 96
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.74 E-value=7.3e-19 Score=211.13 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=115.1
Q ss_pred CccEEEEeeEEEeCCC--cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-CCcceEEECCEeCCCCChHH
Q psy4347 479 NASIEFRDVNFSYIDK--HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-PNAGAIYIDGKNINDVDLDS 555 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-p~~G~I~idG~di~~~~~~~ 555 (816)
.+.|++++. ++|-- .+.++++|+||+ |++++|+|||||||||++|+++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 356899988 44420 136899999999 99999999999999999999999974 7888752 1 1
Q ss_pred HhhccEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q psy4347 556 LRRHIAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634 (816)
Q Consensus 556 lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARA 634 (816)
.+..+++|+| +|. .++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 2456888887 664 377777643 258999999999999
Q ss_pred h--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhcCCCEEEEEecChhHHHhc
Q psy4347 635 I--LKNTPILVFDEA---TSSLDSITE-NNILSSLKTASRNKTTICIAHRLSTIKHL 685 (816)
Q Consensus 635 l--l~~p~iLiLDE~---Ts~LD~~te-~~i~~~l~~~~~~~T~i~IaHrls~i~~~ 685 (816)
+ +.+|+++||||| ||+||..+. ..+.+.|.+ .++|+|++||+.+....+
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9 999999999999 999999886 578888877 489999999998876544
No 97
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=1.6e-19 Score=219.64 Aligned_cols=163 Identities=21% Similarity=0.263 Sum_probs=112.4
Q ss_pred hHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCC-HHHHHHHHHHcCChhH
Q psy4347 524 STIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKS-YEETIEAAKLADLHNS 602 (816)
Q Consensus 524 STl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~-~~~i~~a~~~a~l~~~ 602 (816)
+|+..+..+.+.|+.|+|.++|.+|.++....+.+.++++.+- .+...+.. ..++.+..+. ..++
T Consensus 382 ~~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~------------~l~~~~~~~~~~~~~~~~~--~~~~ 447 (916)
T 3pih_A 382 RTCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNL------------NLTEREREIVGELLKEIEK--RLEF 447 (916)
T ss_dssp EECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSC------------CCCTTTTTTHHHHHHHHHH--HHHH
T ss_pred ccchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhc------------cCcHHHHHHHHhhHHHHHH--HHHH
Confidence 3445666778899999999999998654333333333332211 11110000 0111111100 0122
Q ss_pred HHhCCCCcccc-ccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Q psy4347 603 IIKWPNHYETQ-VGERGLKLSGGEKQRVAIARAILKNTP--ILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHR 678 (816)
Q Consensus 603 I~~LP~GydT~-VGE~G~~LSGGqrQRiaiARAll~~p~--iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHr 678 (816)
+..+ |++.. ......+|||||||||+|||||..+|+ +|||||||++||+.....+.+.|+++. +|.|+|+|+|+
T Consensus 448 L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 448 LVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp HHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred HHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3322 33221 334456899999999999999999887 999999999999999999999999875 48999999999
Q ss_pred hhHHHhcc-------------CeEEEEcChhHHhhcC
Q psy4347 679 LSTIKHLL-------------GYKAHRKTSTNLVRGN 702 (816)
Q Consensus 679 ls~i~~~d-------------g~i~~~g~~~~L~~~~ 702 (816)
+..+..|| |+|+..|+++++++..
T Consensus 526 ~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 526 EEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp HHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred HHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 99999887 8999999999998654
No 98
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.73 E-value=6.1e-19 Score=190.96 Aligned_cols=149 Identities=18% Similarity=0.142 Sum_probs=105.2
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh----HHH--hhccEEEcCCCCccc-ccHHHHHhcC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL----DSL--RRHIAIVPQDPVLFH-DTILYNINYG 581 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~----~~l--r~~i~~V~Q~~~LF~-~Ti~eNi~~~ 581 (816)
+|++++|||||||||||++++|+|++.|++|+|.++|.|+..... ..+ |..+++|+|++.++. .|+.+|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999876541 223 467999999998884 5899998653
Q ss_pred CCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHH
Q psy4347 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP--ILVFDEATSSLDSITENNI 659 (816)
Q Consensus 582 ~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~--iLiLDE~Ts~LD~~te~~i 659 (816)
. ..+.+..+...+...+.. ...++..++||++||||+..+|+ +|.|| |+++.| +
T Consensus 181 ~-------------~~~~d~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 181 K-------------ARGYDLLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp H-------------HHTCSEEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred H-------------hCCCCEEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 1 011222122222211111 12246677999999999999999 55677 555544 3
Q ss_pred HHHHHHhc--CCCEEEEEecChhH
Q psy4347 660 LSSLKTAS--RNKTTICIAHRLST 681 (816)
Q Consensus 660 ~~~l~~~~--~~~T~i~IaHrls~ 681 (816)
.+.+++.. .+.|+|+|||...+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHcCCcEEEEECCccc
Confidence 33333321 27899999998653
No 99
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.73 E-value=1.7e-19 Score=198.92 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=118.3
Q ss_pred ccceee-eEEeeCCcEEEEeCCCCCchhHHHHHHhcCC--CCCc----ce-EEECCEeCCCCChHHHhhccEEEcCCCCc
Q psy4347 498 RIFSNL-NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF--EPNA----GA-IYIDGKNINDVDLDSLRRHIAIVPQDPVL 569 (816)
Q Consensus 498 ~vL~~i-sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~--~p~~----G~-I~idG~di~~~~~~~lr~~i~~V~Q~~~L 569 (816)
+.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |. |+||+.+.. .++++++++|+..+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 346665 6899999999999999999999999999999 6776 67 999997651 25678899999999
Q ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc-------cCCCEE
Q psy4347 570 FHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL-------KNTPIL 642 (816)
Q Consensus 570 F~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll-------~~p~iL 642 (816)
+..++.+||.+.... + |++|+|++.++++++ .+|++|
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 988999999876431 1 356788888888887 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHhc--CCCEEEEEecChhHHHh--------ccCeEEEEcChhHH
Q psy4347 643 VFDEATSSLDSIT------------ENNILSSLKTAS--RNKTTICIAHRLSTIKH--------LLGYKAHRKTSTNL 698 (816)
Q Consensus 643 iLDE~Ts~LD~~t------------e~~i~~~l~~~~--~~~T~i~IaHrls~i~~--------~dg~i~~~g~~~~L 698 (816)
|+||||+.+|++. ...+...|.++. .++|+|+++|....+.. +.|++++.+.+..|
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 9999999999863 234444555542 37999999998875532 22555555544443
No 100
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.73 E-value=2.5e-18 Score=198.84 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=63.9
Q ss_pred CCC-ChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 619 LKL-SGGEKQRVAIARAILKNT--PILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 619 ~~L-SGGqrQRiaiARAll~~p--~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
.+| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||++..+..||
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d 465 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAH 465 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSS
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCC
Confidence 456 999999999999999999 99999999999999999999999998877899999999999988766
No 101
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=2.2e-17 Score=181.12 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=62.4
Q ss_pred CCCChhHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEEecChhHHHhccCeEEE
Q psy4347 619 LKLSGGEKQ------RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 619 ~~LSGGqrQ------RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
..||||||| |+++||||+.+|++|||||||++||+.....+.+.|+++ .+++|+|+|||+...... .++|+.
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~-~d~~~~ 325 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA-ADHVIR 325 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGG-CSEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh-CCEEEE
Confidence 579999999 678889999999999999999999999999999999885 346899999999765444 466654
Q ss_pred E
Q psy4347 692 R 692 (816)
Q Consensus 692 ~ 692 (816)
.
T Consensus 326 l 326 (339)
T 3qkt_A 326 I 326 (339)
T ss_dssp E
T ss_pred E
Confidence 4
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.73 E-value=8.6e-19 Score=203.14 Aligned_cols=168 Identities=12% Similarity=0.051 Sum_probs=120.1
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
++.+++++.|+. -..+|. ..+++|++++|+|+||||||||++.++|...|+ |+ +.+.
T Consensus 258 ~~~~~l~~g~~~--ld~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVR--LDEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHH--HHHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHH--HHHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 566777777742 122444 499999999999999999999999999999885 54 1245
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
+++|++. .++.+|.... ..+.++ +...++.++. ......|||||+||+++||++..+|++
T Consensus 315 ~~~ee~~---~~l~~~~~~~--g~~~~~----~~~~g~~~~~-----------~~~p~~LS~g~~q~~~~a~~l~~~p~l 374 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSW--GMDFEE----MERQNLLKIV-----------CAYPESAGLEDHLQIIKSEINDFKPAR 374 (525)
T ss_dssp EESSSCH---HHHHHHHHTT--SCCHHH----HHHTTSEEEC-----------CCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCCH---HHHHHHHHHc--CCCHHH----HHhCCCEEEE-----------EeccccCCHHHHHHHHHHHHHhhCCCE
Confidence 6777762 3555554321 122222 1122332222 223367999999999999999999999
Q ss_pred EEEeCCCCCCCHH-----HHHHHHHHHHHhc-CCCEEEEEecCh----------hHHHhccCeEEEEc
Q psy4347 642 LVFDEATSSLDSI-----TENNILSSLKTAS-RNKTTICIAHRL----------STIKHLLGYKAHRK 693 (816)
Q Consensus 642 LiLDE~Ts~LD~~-----te~~i~~~l~~~~-~~~T~i~IaHrl----------s~i~~~dg~i~~~g 693 (816)
||+| ||++||.. ....+.+.++.+. .|.|+|+|+|+. ..+....++|+...
T Consensus 375 lilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~ 441 (525)
T 1tf7_A 375 IAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 441 (525)
T ss_dssp EEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred EEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEE
Confidence 9999 99999999 8888888877653 489999999998 56666556666443
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=1.2e-19 Score=196.21 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=81.7
Q ss_pred EeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC-CCCCcceEEECCEeCCCCChHHHhhccEEE
Q psy4347 485 RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF-FEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563 (816)
Q Consensus 485 ~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl-~~p~~G~I~idG~di~~~~~~~lr~~i~~V 563 (816)
+||++.|+. +.+++|++|+| +|||+||+|||||++.|.|. ..|++| |.++|.++.. +. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478889954 67999999998 99999999999999999998 889999 9999987754 11 1 4668999
Q ss_pred cCCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q psy4347 564 PQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPIL 642 (816)
Q Consensus 564 ~Q~~~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iL 642 (816)
+|++.++ .-||.||..++......++.....+. +.+. ++..+ .++|||||||+++|||++ +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987765 56899988876431111111111110 1111 11111 469999999999999986 99
Q ss_pred EEeCCCCC-CCHHHHHHHHHHHHHhcC--CCEEEEEecChhH
Q psy4347 643 VFDEATSS-LDSITENNILSSLKTASR--NKTTICIAHRLST 681 (816)
Q Consensus 643 iLDE~Ts~-LD~~te~~i~~~l~~~~~--~~T~i~IaHrls~ 681 (816)
++||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999874 33443332 5788888999854
No 104
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.71 E-value=2.3e-17 Score=186.47 Aligned_cols=70 Identities=24% Similarity=0.314 Sum_probs=62.4
Q ss_pred CCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCEEEEEecChhHHHhccCeEE
Q psy4347 620 KLSGGEKQRVAIARAIL----KNTPILVFDEATSSLDSITENNILSSLKTASR-NKTTICIAHRLSTIKHLLGYKA 690 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll----~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~~dg~i~ 690 (816)
.||||||||++||++|+ ++|++|||||||++||+.....+.+.|+++.. +.++|+|||+...+..|| +++
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d-~~~ 407 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSD-ALV 407 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCS-EEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCC-EEE
Confidence 49999999999999999 68999999999999999999999999988753 689999999988777665 444
No 105
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.70 E-value=3.5e-19 Score=209.82 Aligned_cols=164 Identities=15% Similarity=0.239 Sum_probs=106.4
Q ss_pred cEEEEeeEEEeCCCcccccceee----------eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-CcceEEECCEeCC
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNL----------NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIYIDGKNIN 549 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~i----------sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-~~G~I~idG~di~ 549 (816)
.++++||++.|+. ..+++|+.+ +|+++. +|||||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~-~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEE-KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHH-HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHH-HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 5899999999964 224566555 377775 999999999999999999999989 8999999999963
Q ss_pred C--C-ChHHHhhccEEEcCCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhH
Q psy4347 550 D--V-DLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625 (816)
Q Consensus 550 ~--~-~~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGq 625 (816)
. . ....+|+.|+||+|++.++ ..||++||.++. ... .+ .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~---------~~~--~~------------------~~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ---------NAI--AG------------------EGMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH---------HHH--HC------------------SSSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH---------HHh--cC------------------Cccccc---
Confidence 2 1 2356789999999999888 459999986421 000 00 011112
Q ss_pred HHHHHHHHHhccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhc-C--CCEEEEEecChh
Q psy4347 626 KQRVAIARAILKNTPILVFDEA------TSSLDSITENNILSSLKTAS-R--NKTTICIAHRLS 680 (816)
Q Consensus 626 rQRiaiARAll~~p~iLiLDE~------Ts~LD~~te~~i~~~l~~~~-~--~~T~i~IaHrls 680 (816)
++++.++.+...+|+++++||| |++||+.....+.+.++++. + +.++++++|++.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 2445555566678999999999 99999999999999998853 2 468889999976
No 106
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=4.3e-19 Score=199.80 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=102.8
Q ss_pred ccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
+.|+++||+++|+. .++++|+||+| +|||+||||||||++.|+|+..|+.| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 45999999999964 67999999998 99999999999999999999987666 2444332211 112467
Q ss_pred cEEEcCCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 560 IAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 560 i~~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
+++++|++.++ ..||.||+.++... +.++.+.. +.++|.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998887 67999999887642 11111111 1123321 3455677899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHH
Q psy4347 639 TP---ILVFDEAT-SSLDSITENNILSSLKTASRNKTTICIAHRLSTI 682 (816)
Q Consensus 639 p~---iLiLDE~T-s~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i 682 (816)
|+ +|++|||| ++||+... .+ ++.+..+.++|+|.|...++
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~-~~---lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDI-EF---MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHH-HH---HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHH-HH---HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 69998774 33 33444578899998887654
No 107
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.70 E-value=6.7e-20 Score=197.21 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=96.1
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCC---
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKS--- 584 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~--- 584 (816)
+++.++||+|+||||||||+++|.+++.++ | . . ++.+.+|+||+++|+.++++|+.++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 357899999999999999999999999874 2 0 1 4556677999999999999999876321
Q ss_pred CCHHHHHHHHHHcCChhHHHhCCCCcccc------ccCCCCCCChhHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHH
Q psy4347 585 KSYEETIEAAKLADLHNSIIKWPNHYETQ------VGERGLKLSGGEKQRVAIA--RAILKNTPILVFDEATSSLDSIT 655 (816)
Q Consensus 585 ~~~~~i~~a~~~a~l~~~I~~LP~GydT~------VGE~G~~LSGGqrQRiaiA--RAll~~p~iLiLDE~Ts~LD~~t 655 (816)
.+....-++.+.+.+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000011222334567899999998875 4566789999999999998 565 999999999999999864
No 108
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.69 E-value=1.9e-18 Score=178.68 Aligned_cols=170 Identities=16% Similarity=0.065 Sum_probs=104.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh--cCCCCCcceEEECCEeCCCCChHHHhhc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY--RFFEPNAGAIYIDGKNINDVDLDSLRRH 559 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~--gl~~p~~G~I~idG~di~~~~~~~lr~~ 559 (816)
++++++++.|+. -..+|.+ .|++|++++|+||||||||||+++|+ ++..+.+|.+.+++.+... .....++.
T Consensus 7 ~~~~~i~tg~~~--lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPG--FDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTT--TGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHh--HHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 566777777754 1223433 79999999999999999999999999 7767888888888754321 22334567
Q ss_pred cEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 560 IAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 560 i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
+++++|+...+. -++.++....... ...+.... . ...+-++.+....+..-..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------------~----~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEKFVL--------------------E----DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-ccccceec--------------------c----CcccHHHHHHHHHHHHHhhC
Confidence 888888754332 2333332211100 00000000 0 11233444444444444579
Q ss_pred CCEEEEeCCCCCCC-----HHHHHHHHHHHHHhc-CCCEEEEEecChhHH
Q psy4347 639 TPILVFDEATSSLD-----SITENNILSSLKTAS-RNKTTICIAHRLSTI 682 (816)
Q Consensus 639 p~iLiLDE~Ts~LD-----~~te~~i~~~l~~~~-~~~T~i~IaHrls~i 682 (816)
|++++|||||++|| +...+.+.+.++.+. .|+|+|++||.++.+
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 99999999999997 666666777776653 489999999999987
No 109
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.68 E-value=1.3e-17 Score=170.31 Aligned_cols=143 Identities=21% Similarity=0.250 Sum_probs=98.5
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-------CcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHH
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-------NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNI 578 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-------~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi 578 (816)
-|++|++++|+||||||||||+++|+|.+.| ..|.|++++.+. .+ ++.+++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997666 455888888652 12 2357778888888877999998
Q ss_pred hcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc-------cCCCEEEEeCCCCCC
Q psy4347 579 NYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL-------KNTPILVFDEATSSL 651 (816)
Q Consensus 579 ~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll-------~~p~iLiLDE~Ts~L 651 (816)
.+..+... +.|++.+..+++++ .+|++++|||||+.+
T Consensus 95 ~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAFNS------------------------------------NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECCSH------------------------------------HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecCCh------------------------------------HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 87643211 11222333344443 489999999999999
Q ss_pred CHH-------HH-----HHHHHHHHHhc--CCCEEEEEecChhH----HHhccCeEE
Q psy4347 652 DSI-------TE-----NNILSSLKTAS--RNKTTICIAHRLST----IKHLLGYKA 690 (816)
Q Consensus 652 D~~-------te-----~~i~~~l~~~~--~~~T~i~IaHrls~----i~~~dg~i~ 690 (816)
|++ .+ ..+.+.|.++. .++|+|+|+|..+. +.....+++
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRV 195 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEE
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEE
Confidence 984 22 25566665542 38999999996554 544434443
No 110
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.68 E-value=1.2e-16 Score=195.27 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=113.2
Q ss_pred ccEEEEeeEEEeCCC--cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHH--------hcCCCCCcceEEECCEeCC
Q psy4347 480 ASIEFRDVNFSYIDK--HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL--------YRFFEPNAGAIYIDGKNIN 549 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll--------~gl~~p~~G~I~idG~di~ 549 (816)
+.|++++...-+-.. ++..|++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888875544221 135799999999999999999999999999999999 66666654432
Q ss_pred CCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH
Q psy4347 550 DVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629 (816)
Q Consensus 550 ~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi 629 (816)
++++ ..+|.. +| +.+.+ -..+|+|++++.
T Consensus 702 ----------~~~~---d~i~~~-------ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIV---DCILAR-------VG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECC---SEEEEE-------CC----------------------------------------CHHHHHHH
T ss_pred ----------chHH---HHHHHh-------cC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 1111 011110 11 11111 135788888888
Q ss_pred HHHHHh--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCEEEEEecChhHHHhcc-------CeEEEEcChhH
Q psy4347 630 AIARAI--LKNTPILVFDEATSSLDSITENNI-LSSLKTAS--RNKTTICIAHRLSTIKHLL-------GYKAHRKTSTN 697 (816)
Q Consensus 630 aiARAl--l~~p~iLiLDE~Ts~LD~~te~~i-~~~l~~~~--~~~T~i~IaHrls~i~~~d-------g~i~~~g~~~~ 697 (816)
.+|+++ +.+|+++||||||+++|+.....+ ...++.+. .|+|+|++||..+....+| |++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999988877 44445543 3899999999998887777 88887777665
Q ss_pred H
Q psy4347 698 L 698 (816)
Q Consensus 698 L 698 (816)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 4
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.67 E-value=4.4e-17 Score=180.04 Aligned_cols=138 Identities=20% Similarity=0.175 Sum_probs=102.2
Q ss_pred EeeEEEeCCCcccccceeeeE-------EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-cceEEECCEeCCCCChHHH
Q psy4347 485 RDVNFSYIDKHTKRIFSNLNF-------TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDGKNINDVDLDSL 556 (816)
Q Consensus 485 ~~vsf~Y~~~~~~~vL~~isl-------~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-~G~I~idG~di~~~~~~~l 556 (816)
.+++++|.+ ...+.|+++.+ .+.+|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~-~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIP-SKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEEC-CSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECC-CCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 578888865 25677888887 78899999999999999999999999999998 56665544333 332 2
Q ss_pred hhccEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 557 RRHIAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 557 r~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
+...++++|...-.. .|..+ +|||||
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~-----------------------------------------------------~La~aL 193 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSE-----------------------------------------------------ALRSAL 193 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHH-----------------------------------------------------HHHHHT
T ss_pred hccccceeeeeeccccCCHHH-----------------------------------------------------HHHHHh
Confidence 334556666432211 01111 999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 636 LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
..+|++|++|||| |.++...+.++ ...|+|+|+++|..+.+..+|
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~d 238 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTID 238 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHH
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHH
Confidence 9999999999999 77776655554 335899999999999986554
No 112
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.67 E-value=1.3e-17 Score=201.32 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=123.3
Q ss_pred CCCCchhHHHHHHhcC---------CCCCcceEEECCEeCCC---CChHHHhhccEEEcCCCCcccccHHHHHhcCCCCC
Q psy4347 518 GSGSGKSTIIRLLYRF---------FEPNAGAIYIDGKNIND---VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK 585 (816)
Q Consensus 518 ~sGsGKSTl~~ll~gl---------~~p~~G~I~idG~di~~---~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~ 585 (816)
.|..||+|+.+.+... |.|..|+|.++|.+|.+ ++..++...+.-++|++..+.. +...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~---~~~~~~~--- 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHA---ERVKNRP--- 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCST---TSSSSCS---
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhccc---chhhcch---
Confidence 4667999998887663 56789999999999988 5666666666666665543321 1122221
Q ss_pred CHHHHH-----HHHHHcCChhHHHhCCCCcccc-ccCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHH
Q psy4347 586 SYEETI-----EAAKLADLHNSIIKWPNHYETQ-VGERGLKLSGGEKQRVAIARAILKNT--PILVFDEATSSLDSITEN 657 (816)
Q Consensus 586 ~~~~i~-----~a~~~a~l~~~I~~LP~GydT~-VGE~G~~LSGGqrQRiaiARAll~~p--~iLiLDE~Ts~LD~~te~ 657 (816)
...++. ++.+.. +++..+ |++.. .+..-.+|||||||||+||+||..+| ++|||||||++||+...+
T Consensus 344 ~~~~i~~~i~~ei~~rl---~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 344 EQAIALQRMAADLVKRL---DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp SHHHHHHHHHHHHHHHH---HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred hhHHHHHHHHHHHHHHH---HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 111111 111111 122222 33322 34445689999999999999999999 599999999999999999
Q ss_pred HHHHHHHHhc-CCCEEEEEecChhHHHhcc-------------CeEEEEcChhHHhhc
Q psy4347 658 NILSSLKTAS-RNKTTICIAHRLSTIKHLL-------------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 658 ~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------------g~i~~~g~~~~L~~~ 701 (816)
.+.+.|+++. .|.|+|+|+||+..+..|| |+++..|+.+++.+.
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 9999998874 4899999999999988776 778888999888764
No 113
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.64 E-value=6.2e-17 Score=197.29 Aligned_cols=158 Identities=14% Similarity=0.163 Sum_probs=104.8
Q ss_pred ccEEEEeeEEEeC----CCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH
Q psy4347 480 ASIEFRDVNFSYI----DKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS 555 (816)
Q Consensus 480 g~I~~~~vsf~Y~----~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~ 555 (816)
+.|++++...-.- ..++..|++||||++++|++++|+|||||||||++|++.++.-
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-------------------- 698 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-------------------- 698 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------
Confidence 3577777543220 1124689999999999999999999999999999999875321
Q ss_pred HhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q psy4347 556 LRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635 (816)
Q Consensus 556 lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAl 635 (816)
+.+.-.+||++..-+. +.++| + ...++.|.+ ..+-..+|+|++|+..|+|+
T Consensus 699 ~aq~g~~vpa~~~~i~--~~d~i-~--------------~~ig~~d~l-----------~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 699 MAQIGSYVPAEEATIG--IVDGI-F--------------TRMGAADNI-----------YKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp HHHHTCCBSSSEEEEE--CCSEE-E--------------EEC---------------------CCHHHHHHHHHHHHHH-
T ss_pred HhhcCccccchhhhhh--HHHHH-H--------------HhCChHHHH-----------HHhHHHhhHHHHHHHHHHHh-
Confidence 1111123333321000 00000 0 001111111 11125789999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHh--cCCCEEEEEecChhHHHhcc
Q psy4347 636 LKNTPILVFDEATSSLDSITENNIL-SSLKTA--SRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 636 l~~p~iLiLDE~Ts~LD~~te~~i~-~~l~~~--~~~~T~i~IaHrls~i~~~d 686 (816)
+.+|+++||||||++||+.....+. ..++.+ ..|+|+|++||+++.+..+|
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~ 803 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 803 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHH
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHh
Confidence 8999999999999999999988887 445554 24899999999998877665
No 114
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.64 E-value=2.5e-16 Score=153.04 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=71.3
Q ss_pred CCccccc-----cCCCCCCChhHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEE
Q psy4347 608 NHYETQV-----GERGLKLSGGEKQRVAIA------RAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICI 675 (816)
Q Consensus 608 ~GydT~V-----GE~G~~LSGGqrQRiaiA------RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~I 675 (816)
++|++.+ .....+||||||||++|| |||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|
T Consensus 40 ~~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiiv 119 (148)
T 1f2t_B 40 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV 119 (148)
T ss_dssp SSEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEE
T ss_pred CceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEE
Confidence 3788776 234578999999999876 99999999999999999999999999999999864 47899999
Q ss_pred ecChhHHHhccCeEEEEc
Q psy4347 676 AHRLSTIKHLLGYKAHRK 693 (816)
Q Consensus 676 aHrls~i~~~dg~i~~~g 693 (816)
||++. +...+++++..+
T Consensus 120 sH~~~-~~~~~d~ii~l~ 136 (148)
T 1f2t_B 120 SHDEE-LKDAADHVIRIS 136 (148)
T ss_dssp ESCGG-GGGGCSEEEEEE
T ss_pred EChHH-HHHhCCEEEEEE
Confidence 99995 455556776653
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=5.6e-17 Score=182.36 Aligned_cols=180 Identities=12% Similarity=0.173 Sum_probs=117.7
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcE--EEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKS--VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~--vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~ 558 (816)
.+++++ +++|++ .+ |+++||+|++|++ +|||||||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466677 888954 45 9999999999999 9999999999999999999984 5666665544445567
Q ss_pred ccEEEcCCCCcc-cccHHHHHhcCCCCCCHHH----HHHHHHHcCChhHHHh-------CCCCcccc-------ccCCCC
Q psy4347 559 HIAIVPQDPVLF-HDTILYNINYGDKSKSYEE----TIEAAKLADLHNSIIK-------WPNHYETQ-------VGERGL 619 (816)
Q Consensus 559 ~i~~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~~----i~~a~~~a~l~~~I~~-------LP~GydT~-------VGE~G~ 619 (816)
.++||+|++.++ ..|+.||+.+|.. .+.+. +.+.++. .+.+++.. ++..-|+. |-+.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 899999999988 5699999999864 33221 1111110 11112211 22223333 235556
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCCEEEEEecC
Q psy4347 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT-AS-RNKTTICIAHR 678 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~-~~-~~~T~i~IaHr 678 (816)
.|+-.+ +.|+++|..+++|+++|+||..|.+.....+.+.+++ +. .|.+++.|+.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 677776 8999999999999999999999998887888888876 43 47888888864
No 116
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.61 E-value=1e-17 Score=182.30 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=112.0
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCC--------CCCcceEEECCEeCCCCC---------------hHHHhhccEEE---
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFF--------EPNAGAIYIDGKNINDVD---------------LDSLRRHIAIV--- 563 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~--------~p~~G~I~idG~di~~~~---------------~~~lr~~i~~V--- 563 (816)
=++++|+|+||||||||++.|+|++ .|+.|+|.|||.++...+ ..++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999998 899999999999998763 34678889988
Q ss_pred cCCCCc-ccccHHHHHhcCCCCCCHHHH---HHHHHHcCChhHHH--hCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q psy4347 564 PQDPVL-FHDTILYNINYGDKSKSYEET---IEAAKLADLHNSII--KWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637 (816)
Q Consensus 564 ~Q~~~L-F~~Ti~eNi~~~~~~~~~~~i---~~a~~~a~l~~~I~--~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~ 637 (816)
+|++.+ |+.++.||+.++.|..-...+ .+..+...+...+. .+.+..+.. .+|||||+||+..+++++.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSEEEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCEEEEE
Confidence 788764 688999999888652100011 01111111111110 111111111 1589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
+|+++ ||| ..+.+.|+++.++.|+++++|+.-
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 988 677788888777899999999743
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.61 E-value=1.9e-19 Score=183.37 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=99.8
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcC-CCCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-DKSK 585 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~-~~~~ 585 (816)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+||.+.+..+..+|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999986 5 247888888888887777776421 1111
Q ss_pred CHHHHHHHHHHcCChhHHHhCCCC--ccccccCCCCCCChhHHHHHHHH-HHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4347 586 SYEETIEAAKLADLHNSIIKWPNH--YETQVGERGLKLSGGEKQRVAIA-RAILKNTPILVFDEATSSLDSITENNILSS 662 (816)
Q Consensus 586 ~~~~i~~a~~~a~l~~~I~~LP~G--ydT~VGE~G~~LSGGqrQRiaiA-RAll~~p~iLiLDE~Ts~LD~~te~~i~~~ 662 (816)
. .+.+...+.+++..++.| +++++.++|..+|+||+||+++| |+++.++.++++|||.-. .
T Consensus 80 ~-----~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~-----------~ 143 (208)
T 3c8u_A 80 P-----ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR-----------D 143 (208)
T ss_dssp G-----GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG-----------G
T ss_pred C-----chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhH-----------H
Confidence 0 011111223345555555 88899999999999999999998 999999999999998410 1
Q ss_pred HHHhcCCCEEEEEecChhH
Q psy4347 663 LKTASRNKTTICIAHRLST 681 (816)
Q Consensus 663 l~~~~~~~T~i~IaHrls~ 681 (816)
+.+. -.++|++.+..+.
T Consensus 144 l~~~--~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 144 LTAI--WDVSIRLEVPMAD 160 (208)
T ss_dssp GGGT--CSEEEEECCCHHH
T ss_pred HHHh--cCEEEEEeCCHHH
Confidence 1222 1367777777665
No 118
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.60 E-value=1.5e-16 Score=192.94 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=77.7
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-----
Q psy4347 615 GERGLKLSGGEKQRVAIARAILKNT--PILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL----- 686 (816)
Q Consensus 615 GE~G~~LSGGqrQRiaiARAll~~p--~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d----- 686 (816)
.....+|||||||||+||+||..+| ++|||||||++||+.....+.+.|+++. .|.|+|+|+||+.++..||
T Consensus 499 dR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~L 578 (972)
T 2r6f_A 499 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDI 578 (972)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEe
Confidence 3344689999999999999999985 9999999999999999999999999875 4899999999999998887
Q ss_pred --------CeEEEEcChhHHhhc
Q psy4347 687 --------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 687 --------g~i~~~g~~~~L~~~ 701 (816)
|+|+..|+.+++.+.
T Consensus 579 gpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 579 GPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CSSSGGGCCSEEEEECTTTTTTC
T ss_pred CCCccCCCCEEEEecCHHHHHhh
Confidence 789999999888764
No 119
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.60 E-value=8e-16 Score=163.59 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=101.4
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHh-cCCCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNIN-YGDKS 584 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~-~~~~~ 584 (816)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... +..+.|+..+... ..+.+++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998664 5766 34544321 2357777766543 22333322 222 2
Q ss_pred CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHHH---HHH
Q psy4347 585 KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS--SLDSITE---NNI 659 (816)
Q Consensus 585 ~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts--~LD~~te---~~i 659 (816)
.+.++..++.+...+.+ ..+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 33344444444443322 23345578999998865 78899999999999999 9997544 677
Q ss_pred HHHHHHhc--CCCEEEEEecChhHHH
Q psy4347 660 LSSLKTAS--RNKTTICIAHRLSTIK 683 (816)
Q Consensus 660 ~~~l~~~~--~~~T~i~IaHrls~i~ 683 (816)
.+.|+++. .++|+|+|+|......
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCccc
Confidence 77777653 3899999999987654
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.59 E-value=7.2e-17 Score=160.78 Aligned_cols=139 Identities=16% Similarity=0.080 Sum_probs=93.8
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK 585 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~ 585 (816)
.+++|++++|+|||||||||++++|++. |+.|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 789999999987643221 1345788888765 4668999986521
Q ss_pred CHHHHHHHHHHcCChhHHHhCCC--Ccccc--ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4347 586 SYEETIEAAKLADLHNSIIKWPN--HYETQ--VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661 (816)
Q Consensus 586 ~~~~i~~a~~~a~l~~~I~~LP~--GydT~--VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~ 661 (816)
.. .. ..+....++.+.. +++.. .+.....+|+|++||+++||++.++|+++ +|+...+.+.+
T Consensus 77 ---~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 11 11 1111111111110 11111 12234579999999999999999999987 58877777766
Q ss_pred HHHHh
Q psy4347 662 SLKTA 666 (816)
Q Consensus 662 ~l~~~ 666 (816)
.++.+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 66543
No 121
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.58 E-value=4.8e-16 Score=158.33 Aligned_cols=163 Identities=17% Similarity=0.058 Sum_probs=110.7
Q ss_pred ccccceeeeE-EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh---ccEEEcCCCCccc
Q psy4347 496 TKRIFSNLNF-TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR---HIAIVPQDPVLFH 571 (816)
Q Consensus 496 ~~~vL~~isl-~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~---~i~~V~Q~~~LF~ 571 (816)
+.+.|+++.. .+++|+.++|+||||||||||++.+++...|++|.|.+.+.+. +...++. .+++.+|+...
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 82 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE-- 82 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT--
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh--
Confidence 3567899988 8999999999999999999999999999988889998876544 3333332 34444443210
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCcc-ccccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCC
Q psy4347 572 DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE-TQVGERGLKLSGGEKQRVAIARAILKNTP--ILVFDEAT 648 (816)
Q Consensus 572 ~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~Gyd-T~VGE~G~~LSGGqrQRiaiARAll~~p~--iLiLDE~T 648 (816)
+++.+-+. ....++ -.+- ...|.+|.++...+.+...+|+ ++|+||||
T Consensus 83 ----~~~~~~~~----------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 ----KKLIIIDA----------------------LMKEKEDQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ----TTEEEEEC----------------------CC----CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ----CCEEEEec----------------------cccccCceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 01111110 000000 0000 1348999998888888778999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHhc--CCCEEEEEecCh--------hHHHhccCeEEEE
Q psy4347 649 SSL--DSITENNILSSLKTAS--RNKTTICIAHRL--------STIKHLLGYKAHR 692 (816)
Q Consensus 649 s~L--D~~te~~i~~~l~~~~--~~~T~i~IaHrl--------s~i~~~dg~i~~~ 692 (816)
+.+ |+.....+.+.|+++. .++|+|+++|.. ..+....++|+..
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l 189 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRF 189 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEE
Confidence 888 9988888888887753 478999999998 3355544555544
No 122
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.58 E-value=2.3e-16 Score=163.00 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=95.8
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC--CcceEEECCEeCCCCChHHHhhccEEEcCCCCcccc-cH----HHH
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP--NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TI----LYN 577 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p--~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~-Ti----~eN 577 (816)
-..++|++++|+||||||||||+++|+|+++| ..|.|.++|.+.+. ..++.++|+||++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 78999999876643 236789999999988864 54 455
Q ss_pred HhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q psy4347 578 INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITEN 657 (816)
Q Consensus 578 i~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~ 657 (816)
+.+.... |.| .+++ ++.++.+++++||| ||+.+..
T Consensus 87 ~~~~~~~-------------------------yg~------------~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 87 AEVFGNY-------------------------YGT------------SREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEETTEE-------------------------EEE------------EHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHhcc-------------------------CCC------------CHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 5442110 101 0111 33444557999999 9999999
Q ss_pred HHHHHHHHhcCCCEEEEEecChhHHHh
Q psy4347 658 NILSSLKTASRNKTTICIAHRLSTIKH 684 (816)
Q Consensus 658 ~i~~~l~~~~~~~T~i~IaHrls~i~~ 684 (816)
.+.+.+. ++.|+++++|+++.+..
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH
Confidence 9998875 57999999999998866
No 123
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.57 E-value=4.9e-15 Score=180.22 Aligned_cols=129 Identities=22% Similarity=0.259 Sum_probs=94.2
Q ss_pred CcccccHHHHHhcCCC-CCCHHH------H-HHHHHHcCChhHHHhCCCCcccc-ccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 568 VLFHDTILYNINYGDK-SKSYEE------T-IEAAKLADLHNSIIKWPNHYETQ-VGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 568 ~LF~~Ti~eNi~~~~~-~~~~~~------i-~~a~~~a~l~~~I~~LP~GydT~-VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
.++..||.|++.|... ..+.++ + .+..+.. +++..+ |++.. ....-.+|||||||||+||+||..+
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 3567789999988532 123211 1 1111111 122222 33322 3444568999999999999999999
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEecChhHHHhcc-------------CeEEEEcChhHHhhc
Q psy4347 639 --TPILVFDEATSSLDSITENNILSSLKTAS-RNKTTICIAHRLSTIKHLL-------------GYKAHRKTSTNLVRG 701 (816)
Q Consensus 639 --p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~IaHrls~i~~~d-------------g~i~~~g~~~~L~~~ 701 (816)
|++|||||||++||+...+.+.+.|+++. .|.|+|+|+||+.++..|| |+|+..|+.+++.+.
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 59999999999999999999999998864 5899999999999998876 678888888888764
No 124
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.57 E-value=3.9e-15 Score=148.38 Aligned_cols=69 Identities=28% Similarity=0.344 Sum_probs=63.3
Q ss_pred CCCCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 618 GLKLSGGEKQRVAIARAIL----KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 618 G~~LSGGqrQRiaiARAll----~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
...||||||||++|||||+ ++|+++||||||++||+.++..+.+.|+++.++.++|+|||+..++..||
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad 134 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANAD 134 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCS
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCC
Confidence 3679999999999999996 56799999999999999999999999999888889999999998887765
No 125
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.56 E-value=1.6e-15 Score=183.24 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=100.9
Q ss_pred ccEEEEeeEEEeCCC----cccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC-CcceEEECCEeCCCCChH
Q psy4347 480 ASIEFRDVNFSYIDK----HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIYIDGKNINDVDLD 554 (816)
Q Consensus 480 g~I~~~~vsf~Y~~~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-~~G~I~idG~di~~~~~~ 554 (816)
+.|++++.. +|-- ++..+++|+||+ ++|++++|+|||||||||++|+++|+.-+ +.| ..+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 357777653 2210 135799999999 99999999999999999999999997532 223 22211
Q ss_pred HHhhccEEEcCCCCccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 555 SLRRHIAIVPQDPVLFH-DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 555 ~lr~~i~~V~Q~~~LF~-~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
-+..+++++| +|. -++.||+..+. ..+|+|+++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~~------------------------------------stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASGR------------------------------------STFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhhh------------------------------------hhhhHHHHH-HHHHH
Confidence 1245666665 553 35666653210 245677664 44445
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCEEEEEecChhHHHhcc
Q psy4347 634 AILKNTPILVFDEATSSLDSITENNI-LSSLKTAS--RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~LD~~te~~i-~~~l~~~~--~~~T~i~IaHrls~i~~~d 686 (816)
..+.+|+++||||||+++|+.....+ .+.++.+. .++|+|++||+.+....+|
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d 737 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPE 737 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHH
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhh
Confidence 56899999999999999888766554 45555543 3799999999998877666
No 126
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=3.9e-17 Score=179.21 Aligned_cols=178 Identities=14% Similarity=0.157 Sum_probs=121.8
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHHh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD----LDSLR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~----~~~lr 557 (816)
|+++|+++.|.. ..+|+++||++++|++++|+|+||||||||++.|+|++.|++|+|.+.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 567788888843 57999999999999999999999999999999999999999999999999886432 12357
Q ss_pred hccEEEcCCCCccc----------c---cHHHHHh---cCC--------CC--CCHHHHHHHHHH-------------cC
Q psy4347 558 RHIAIVPQDPVLFH----------D---TILYNIN---YGD--------KS--KSYEETIEAAKL-------------AD 598 (816)
Q Consensus 558 ~~i~~V~Q~~~LF~----------~---Ti~eNi~---~~~--------~~--~~~~~i~~a~~~-------------a~ 598 (816)
..+++|+|++.+|. | +++|.+. .+. +. .++..+.+.++. ..
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 78999999999984 2 2333321 000 00 011112111110 00
Q ss_pred ChhHHHhCCCCcc-cccc-CCCCCCChhHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4347 599 LHNSIIKWPNHYE-TQVG-ERGLKLSGGEKQRVAIARAILK------NTPILVFDEATSSLDSITENNILSSLKTA 666 (816)
Q Consensus 599 l~~~I~~LP~Gyd-T~VG-E~G~~LSGGqrQRiaiARAll~------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~ 666 (816)
+.+.+...|+-+- +.+. -....+|+|++|+++.|++++. +|+++. |||+|...-..+.+.|.+.
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 1111112221100 0011 0113579999999999999997 689886 9999999999999998774
No 127
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.53 E-value=1e-14 Score=147.86 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=89.4
Q ss_pred cccceeeeE-EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHH
Q psy4347 497 KRIFSNLNF-TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575 (816)
Q Consensus 497 ~~vL~~isl-~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~ 575 (816)
.+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.+++++.+ ..+...+++.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~---------------- 65 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQM---------------- 65 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHH----------------
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHH----------------
Confidence 456777766 799999999999999999999999999 4444555555432 1223222221
Q ss_pred HHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChh--HHHHHHHHHHhccC-CCEEEEeCCCCCCC
Q psy4347 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGG--EKQRVAIARAILKN-TPILVFDEATSSLD 652 (816)
Q Consensus 576 eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGG--qrQRiaiARAll~~-p~iLiLDE~Ts~LD 652 (816)
... ...+.+++. ..+ .+ ..+|++ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 66 --~~~--~~~~~~~~~------------~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 66 --AET--RGLNPEEAL------------SRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp --HHT--TTCCHHHHH------------HHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred --HHh--cCCChHHHh------------hcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 110 001112211 111 01 123344 47899999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHhcC--CCEEEEEecChh
Q psy4347 653 SITE--------NNILSSLKTASR--NKTTICIAHRLS 680 (816)
Q Consensus 653 ~~te--------~~i~~~l~~~~~--~~T~i~IaHrls 680 (816)
+..+ ..+.+.|+++.+ ++|+|+++|...
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 7432 345555665433 789999999876
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.50 E-value=1.2e-14 Score=165.55 Aligned_cols=176 Identities=16% Similarity=0.164 Sum_probs=115.9
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC----hHH--HhhccEEEcCCCCcc-cc
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD----LDS--LRRHIAIVPQDPVLF-HD 572 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~----~~~--lr~~i~~V~Q~~~LF-~~ 572 (816)
-+++||++++|++++|||+||||||||+++|+|++.|++|+|.++|.|+.... +.. .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999988875431 122 477899999998876 66
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc-CC-CEEEEeCCCCC
Q psy4347 573 TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK-NT-PILVFDEATSS 650 (816)
Q Consensus 573 Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~-~p-~iLiLDE~Ts~ 650 (816)
|+++||.++... +.+-.|...+...++ -.++-.--+|++.++|++.. .| .+|+..+||++
T Consensus 363 tV~e~l~~a~~~-------------~~DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG 424 (503)
T 2yhs_A 363 VIFDAIQAAKAR-------------NIDVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 424 (503)
T ss_dssp HHHHHHHHHHHT-------------TCSEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT
T ss_pred HHHHHHHHHHhc-------------CCCEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc
Confidence 999999875311 111001011100000 01111223588999998764 46 35555558888
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEecChhH-HH---------hccCeEEEEcChhHH
Q psy4347 651 LDSITENNILSSLKTASRNKTTICIAHRLST-IK---------HLLGYKAHRKTSTNL 698 (816)
Q Consensus 651 LD~~te~~i~~~l~~~~~~~T~i~IaHrls~-i~---------~~dg~i~~~g~~~~L 698 (816)
.|.... .+.+.+ .-+.|.|++|| +.. .+ .....|...|+++.+
T Consensus 425 q~al~~---ak~f~~-~~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 425 QNAVSQ---AKLFHE-AVGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp HHHHHH---HHHHHH-HTCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHHHH---HHHHHh-hcCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCCh
Confidence 665532 222332 13789999999 433 11 112467777777655
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.47 E-value=2.7e-16 Score=154.47 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=74.3
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEE
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~ 562 (816)
+.+|++++|+ +..+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.+. ...+ .+
T Consensus 9 ~~~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~ 79 (158)
T 1htw_A 9 PDEFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GK 79 (158)
T ss_dssp CSHHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TE
T ss_pred CCHHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cc
Confidence 3456677884 357999999999999999999999999999999999999 9999999999887521 1112 27
Q ss_pred EcCCCCcccccHHHHHhc
Q psy4347 563 VPQDPVLFHDTILYNINY 580 (816)
Q Consensus 563 V~Q~~~LF~~Ti~eNi~~ 580 (816)
|+|++.+|.-|+.||+.+
T Consensus 80 ~~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 80 MIYHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEEEECTTCSCTTHHHH
T ss_pred ceeccccccCCcHHHHHH
Confidence 999999997799999953
No 130
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.47 E-value=1.4e-16 Score=179.52 Aligned_cols=142 Identities=14% Similarity=0.156 Sum_probs=102.5
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC----ChHHHh
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV----DLDSLR 557 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~----~~~~lr 557 (816)
++++|++|.|+ ...+|+++ + .++|+.++|+|||||||||++++|+|++.|++|+|.++|.++... +...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 45556666653 24578887 5 389999999999999999999999999999999999999887421 122345
Q ss_pred hccEEEc---------CCCCcc--c-----ccHHHHHhcCC---------CCCCHHHHHHHHHHcCChhHHHhCCCCccc
Q psy4347 558 RHIAIVP---------QDPVLF--H-----DTILYNINYGD---------KSKSYEETIEAAKLADLHNSIIKWPNHYET 612 (816)
Q Consensus 558 ~~i~~V~---------Q~~~LF--~-----~Ti~eNi~~~~---------~~~~~~~i~~a~~~a~l~~~I~~LP~GydT 612 (816)
..+++++ |+|.++ . .|+.+|+.++. ...+..+..+.+...++.++. +
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~------ 290 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--I------ 290 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--H------
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--H------
Confidence 5676655 998763 2 48999987531 111223444455555665432 1
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q psy4347 613 QVGERGLKLSGGEKQRVAIARAILKNTPILV 643 (816)
Q Consensus 613 ~VGE~G~~LSGGqrQRiaiARAll~~p~iLi 643 (816)
..+|||||+|| |||||+.+|++..
T Consensus 291 -----~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 291 -----SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp -----HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred -----HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 25799999999 9999999999875
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.46 E-value=3.2e-15 Score=163.41 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=100.1
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChH----HHhhc--cEEEcCCCCcc-cccHHHHH
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD----SLRRH--IAIVPQDPVLF-HDTILYNI 578 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~----~lr~~--i~~V~Q~~~LF-~~Ti~eNi 578 (816)
..++|++++|||||||||||+++.|+|++.|++|+|.++|.|+...... .++++ +.+++|+..++ ..|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999876542 23444 44999999888 45999999
Q ss_pred hcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHH
Q psy4347 579 NYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENN 658 (816)
Q Consensus 579 ~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~ 658 (816)
.++.. .+.+-.+ +||. |-. ..-..=..+.-.|+|++..++++++||.+|. .|....
T Consensus 205 ~~~~~-------------~~~d~vl------iDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~-- 260 (328)
T 3e70_C 205 QHAKA-------------RGIDVVL------IDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ-- 260 (328)
T ss_dssp HHHHH-------------HTCSEEE------EEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH--
T ss_pred HHHHh-------------ccchhhH------Hhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH--
Confidence 75421 0110000 1221 100 0011122344559999999999999996665 333322
Q ss_pred HHHHHHHhcCCCEEEEEecCh
Q psy4347 659 ILSSLKTASRNKTTICIAHRL 679 (816)
Q Consensus 659 i~~~l~~~~~~~T~i~IaHrl 679 (816)
.+.+.+ ..+.|.|++||--
T Consensus 261 -~~~~~~-~~~it~iilTKlD 279 (328)
T 3e70_C 261 -ARQFNE-AVKIDGIILTKLD 279 (328)
T ss_dssp -HHHHHH-HSCCCEEEEECGG
T ss_pred -HHHHHH-hcCCCEEEEeCcC
Confidence 222322 1378999999944
No 132
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=8.3e-14 Score=151.91 Aligned_cols=134 Identities=18% Similarity=0.222 Sum_probs=80.7
Q ss_pred cEEEEeCCCCCchhHHHHHHhc-CCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc-cccHHHHHhcCCCCCCHH
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYR-FFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYE 588 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~g-l~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~ 588 (816)
..+.|+||+|+||||+++.+++ ++.|+.|.|.++|.+..... .-+..+++++|++++. +.+- .+. .+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~ 107 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MGN--NDRI 107 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cCC--cchH
Confidence 3499999999999999999999 89999999999998875432 2367899999988764 2211 011 1111
Q ss_pred HHHHHHHH----cCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4347 589 ETIEAAKL----ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK 664 (816)
Q Consensus 589 ~i~~a~~~----a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~ 664 (816)
.+.+..+. .++.+++ .||| +..+|+++|+|||++ ||+.+...+.+.|+
T Consensus 108 ~~~~~i~~~~~~~~~~~~~----------------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVDFQD----------------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp HHHHHHHHHTTTTC---------------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccc----------------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 23333322 2222221 5676 778999999999999 99999999999999
Q ss_pred HhcCCCEEEEEecChhH
Q psy4347 665 TASRNKTTICIAHRLST 681 (816)
Q Consensus 665 ~~~~~~T~i~IaHrls~ 681 (816)
+..++.++|++||+++.
T Consensus 160 ~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HSTTTEEEEEEESCSCS
T ss_pred hhcCCCEEEEEeCCHHH
Confidence 88778899999999754
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.43 E-value=2.6e-15 Score=156.53 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=99.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHh---cCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc-cccHHHHHhcC---
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLY---RFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG--- 581 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~---gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~--- 581 (816)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...++.++|++.++ ..++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 23455677778887766 45889988541
Q ss_pred ----------CCCCCHHHHHHHHHHcCChhHH-HhCCC--CccccccCCCCCCChhHHHHHHHHHHh-ccCCCEEEEe--
Q psy4347 582 ----------DKSKSYEETIEAAKLADLHNSI-IKWPN--HYETQVGERGLKLSGGEKQRVAIARAI-LKNTPILVFD-- 645 (816)
Q Consensus 582 ----------~~~~~~~~i~~a~~~a~l~~~I-~~LP~--GydT~VGE~G~~LSGGqrQRiaiARAl-l~~p~iLiLD-- 645 (816)
.+ .+.+++....+.....-.| ...|. .++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 11 1222222221111111000 00000 011111223357898 66 888 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHhc
Q psy4347 646 --EATSSLDSITENNILSSLKTAS 667 (816)
Q Consensus 646 --E~Ts~LD~~te~~i~~~l~~~~ 667 (816)
|||++||..++..+.+.++++.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999998887753
No 134
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=3.4e-14 Score=156.71 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=80.3
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-CCcceEEEC-CEeCCCCChHHHhhccEEEcCCCCcccc-cH
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-PNAGAIYID-GKNINDVDLDSLRRHIAIVPQDPVLFHD-TI 574 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-p~~G~I~id-G~di~~~~~~~lr~~i~~V~Q~~~LF~~-Ti 574 (816)
.-++++++. .+|++++|+||||||||||+++|+|+.. |+.|+|.++ |.+.. ...+..+++|+|++.++.. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4899999999999999999999999999 999999997 76643 2346689999999998855 89
Q ss_pred HHHHhcCCCCCCHHHHH----HHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q psy4347 575 LYNINYGDKSKSYEETI----EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636 (816)
Q Consensus 575 ~eNi~~~~~~~~~~~i~----~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll 636 (816)
+++-. ...+.+++. ++++.+++.+|. ...-.+|| ||+||++||++++
T Consensus 279 ~e~~l---~~l~~~e~~~~~~e~l~~~gl~~f~-----------~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGL---WHLEPEQITQGFVEFHDYLGHCKYR-----------DCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCC---CCCCHHHHHHTSGGGGGGTTCSSST-----------TCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhh---cCCCHHHHHHHHHHHHHHcCCchhc-----------CCCcccCC-HHHHHHHHHhcCC
Confidence 98632 234444443 223333333332 33336899 9999999999863
No 135
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.41 E-value=4.2e-16 Score=179.86 Aligned_cols=176 Identities=15% Similarity=0.191 Sum_probs=122.3
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCccc-ccHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH-DTIL 575 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~-~Ti~ 575 (816)
..+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.++. +.+++++.|...... .|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999999999999999875322221 456788888766222 3777
Q ss_pred HHHhcC---CC------CCCHHHHHHHHHHc--C-----------ChhHHHh---CCCCcccccc-------CCCCCCCh
Q psy4347 576 YNINYG---DK------SKSYEETIEAAKLA--D-----------LHNSIIK---WPNHYETQVG-------ERGLKLSG 623 (816)
Q Consensus 576 eNi~~~---~~------~~~~~~i~~a~~~a--~-----------l~~~I~~---LP~GydT~VG-------E~G~~LSG 623 (816)
+++... +| ....+|+..+.+.+ | +.+.+.+ .|.|....+. .....+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 777543 23 23444555555444 2 1122222 3344433222 12345799
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCEEEE--EecChhHHHhccC
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-RNKTTIC--IAHRLSTIKHLLG 687 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~i~--IaHrls~i~~~dg 687 (816)
||+||.++|. + | |++||+.+...+.+.|.++. .++|+++ +||+++.+...+|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999987751 1 7 99999988777766666654 3688875 8999999877655
No 136
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.39 E-value=1.7e-13 Score=140.92 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=83.3
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhc--CCCC-----CcceEEECCEeCCC-CChHHHhhccEEEcCCCCcccccHHHH
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYR--FFEP-----NAGAIYIDGKNIND-VDLDSLRRHIAIVPQDPVLFHDTILYN 577 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~g--l~~p-----~~G~I~idG~di~~-~~~~~lr~~i~~V~Q~~~LF~~Ti~eN 577 (816)
-+++|++++|+||||||||||++.+++ ...| ..|.+++++.+... -....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 67899999875311 1123345567766653 4566
Q ss_pred HhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHH-
Q psy4347 578 INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL--KNTPILVFDEATSSLDSI- 654 (816)
Q Consensus 578 i~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll--~~p~iLiLDE~Ts~LD~~- 654 (816)
+.+..+ .+.++..+. +.-+++++ .+|+++++||||+.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 655432 222222221 11122222 589999999999999986
Q ss_pred ------HH-----HHHHHHHHHhc--CCCEEEEEecChhHHH
Q psy4347 655 ------TE-----NNILSSLKTAS--RNKTTICIAHRLSTIK 683 (816)
Q Consensus 655 ------te-----~~i~~~l~~~~--~~~T~i~IaHrls~i~ 683 (816)
++ ..+...|.++. .++|+|+++|-.....
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 42 23444444432 3899999999766543
No 137
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.32 E-value=3.1e-15 Score=159.40 Aligned_cols=145 Identities=18% Similarity=0.180 Sum_probs=106.8
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCC-Ccc-cccH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP-VLF-HDTI 574 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~-~LF-~~Ti 574 (816)
+.+++++++++++| ++|+||+|||||||++.|++.+.+ |.|.++|.++........++.+++++|++ ..+ .-++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45899999999999 999999999999999999999987 79999999987766667788899999985 333 3366
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC-----
Q psy4347 575 LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS----- 649 (816)
Q Consensus 575 ~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts----- 649 (816)
.|||....+.....+. ....+....++ ..|||||+||+.|++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~~~~~------~~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRf 169 (274)
T 2x8a_A 109 FDEVDALCPRRSDRET------GASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRL 169 (274)
T ss_dssp EETCTTTCC---------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSS
T ss_pred eehhhhhhcccCCCcc------hHHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccC
Confidence 7777654332111110 01122222222 469999999999999999999985 99964
Q ss_pred -------CCCHHHHHHHHHHHH
Q psy4347 650 -------SLDSITENNILSSLK 664 (816)
Q Consensus 650 -------~LD~~te~~i~~~l~ 664 (816)
--|.+....|++.+.
T Consensus 170 d~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 170 DKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CEEEECCSCCHHHHHHHHHHHT
T ss_pred CeEEEeCCcCHHHHHHHHHHHH
Confidence 346777777776653
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.32 E-value=1.2e-12 Score=127.07 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=71.4
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc--eEEECCEeCCCCChHHHhhccEEEcCCCCcccccHH
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG--AIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G--~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~ 575 (816)
.+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------ 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------ 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC------------------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH------------------------
Confidence 356666 8999999999999999999999999987 57 666666543321
Q ss_pred HHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q psy4347 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655 (816)
Q Consensus 576 eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~t 655 (816)
+++.+|++||||||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 3467899999999998 66555
Q ss_pred HHHHHHHHHHhc-CCCE-EEEEecC
Q psy4347 656 ENNILSSLKTAS-RNKT-TICIAHR 678 (816)
Q Consensus 656 e~~i~~~l~~~~-~~~T-~i~IaHr 678 (816)
++.+.+.++++. +++| +|+++|+
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 888888887653 3677 7777775
No 139
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=1.4e-13 Score=148.64 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=83.0
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEE---CCEeCCCCChHHHh-hccEEEcCCCCcc------cccHH
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI---DGKNINDVDLDSLR-RHIAIVPQDPVLF------HDTIL 575 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~i---dG~di~~~~~~~lr-~~i~~V~Q~~~LF------~~Ti~ 575 (816)
++.+|++++|+||||||||||+|+|+ +..|++|+|.+ +|.++..... .++ +.+|+|+|+|.+. +.|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9998876432 223 3799999998542 4588
Q ss_pred HHH--hcC---------C---C-CCCHHHHHHHHHHcCChh-HHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 576 YNI--NYG---------D---K-SKSYEETIEAAKLADLHN-SIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 576 eNi--~~~---------~---~-~~~~~~i~~a~~~a~l~~-~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
||+ .|+ . + ......+.++++..++.+ ...+.| ..|||.++++++|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 443 1 1 112356888999999975 555555 569998889999987
No 140
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.31 E-value=4.3e-15 Score=148.20 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=102.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc-cccHHHHHhcCCCCCCHH
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYE 588 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~ 588 (816)
|++++|+|||||||||++++|++ |.+|.+.+||.++... ..+++++|+...+ ..++.+|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999997 7789999999766432 2467888876544 45888887532
Q ss_pred HHHHHHHHcCChhHHHhCCCCccccccCCCCCC--ChhHHHHHHHHH------HhccCCCEEEEeCCCCCCCHHHHHHHH
Q psy4347 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKL--SGGEKQRVAIAR------AILKNTPILVFDEATSSLDSITENNIL 660 (816)
Q Consensus 589 ~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~L--SGGqrQRiaiAR------All~~p~iLiLDE~Ts~LD~~te~~i~ 660 (816)
..... ..+. +.|.....+-+. . +.-..+ |+|++|++.++. +++++|+...+|+ ++|+..... .
T Consensus 66 -~~~~~-~~~~-~~ild~~~~~~~-~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 66 -TVNFL-LAQN-DVVLDYIAFPDE-A-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp -HHHHH-HTTC-EEEEESCCCHHH-H-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred -HHHHH-hcCC-cEEEeeccCHHH-H-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 11111 1111 111110000000 0 000124 889999988888 8999998888884 799987777 7
Q ss_pred HHHHHhc-CCCEEEEEecC-hhHHHhcc------CeEEEEcChhHH
Q psy4347 661 SSLKTAS-RNKTTICIAHR-LSTIKHLL------GYKAHRKTSTNL 698 (816)
Q Consensus 661 ~~l~~~~-~~~T~i~IaHr-ls~i~~~d------g~i~~~g~~~~L 698 (816)
+.++.+. .+.|+|..+|. ++++.... |+++..|+.+-|
T Consensus 137 ~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 137 EEFESKGIDERYFYNTSHLQPTNLNDIVKNLKTNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHTTCCTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC------
T ss_pred HHHhhcCCCccEEEeCCCCChhhHHHHHHHHhhCCcEEEeecCCch
Confidence 7777764 35799999999 88877644 665555554433
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.29 E-value=3.3e-12 Score=126.28 Aligned_cols=110 Identities=21% Similarity=0.178 Sum_probs=76.0
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcce-EEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA-IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD 582 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~-I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~ 582 (816)
+|++++|+.++|+||+|||||||++.+++.+.|++|. +.+ -+..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~----------------------------~~~~~~~---- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF----------------------------FDTKDLI---- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE----------------------------EEHHHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE----------------------------EEHHHHH----
Confidence 5778899999999999999999999999999877763 211 1111111
Q ss_pred CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHH
Q psy4347 583 KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS-SLDSITENNILS 661 (816)
Q Consensus 583 ~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts-~LD~~te~~i~~ 661 (816)
+++........ .. -+...+.+|++||||||++ ++|+.....+.+
T Consensus 80 -----~~~~~~~~~~~--------------------~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 80 -----FRLKHLMDEGK--------------------DT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp -----HHHHHHHHHTC--------------------CS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred -----HHHHHHhcCch--------------------HH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 11111110000 00 1112245999999999996 899999999988
Q ss_pred HHHHhc-CCCEEEEEecChh
Q psy4347 662 SLKTAS-RNKTTICIAHRLS 680 (816)
Q Consensus 662 ~l~~~~-~~~T~i~IaHrls 680 (816)
.+.+.. +++++|++||...
T Consensus 125 ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 125 IITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHcCCCEEEEcCCCh
Confidence 887654 6899999999864
No 142
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.26 E-value=7.9e-12 Score=138.56 Aligned_cols=72 Identities=26% Similarity=0.346 Sum_probs=62.2
Q ss_pred CCCChhHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhccCeEEE
Q psy4347 619 LKLSGGEKQRV------AIARAILKN-TPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAH 691 (816)
Q Consensus 619 ~~LSGGqrQRi------aiARAll~~-p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~dg~i~~ 691 (816)
..|||||+||+ ++|||+..+ |++|||||||++||+.+...+.+.|+++.++.++|+|||++.. ...+++++.
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~-~~~~d~~~~ 357 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL-EDVADVIIN 357 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG-GGGCSEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH-HhhCCEEEE
Confidence 57999999988 678999999 9999999999999999999999999987666899999999874 444455544
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.25 E-value=2.9e-12 Score=143.55 Aligned_cols=134 Identities=15% Similarity=0.264 Sum_probs=86.8
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHH--HhcCCCCCcc-----eEEECCEeCC-CCChHHHhhccEEEcCCCCcccccHHHH
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRL--LYRFFEPNAG-----AIYIDGKNIN-DVDLDSLRRHIAIVPQDPVLFHDTILYN 577 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~l--l~gl~~p~~G-----~I~idG~di~-~~~~~~lr~~i~~V~Q~~~LF~~Ti~eN 577 (816)
-|++|++++|+||||||||||++. +.+..+|+.| .|+|++.+.. ......+++.+++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4566766544 8999997631 1123334566776655 67788
Q ss_pred HhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH
Q psy4347 578 INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL--KNTPILVFDEATSSLDSIT 655 (816)
Q Consensus 578 i~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll--~~p~iLiLDE~Ts~LD~~t 655 (816)
+.+..+. +.++. .+.+.-+++++ .+|+++++||+|+.+|++.
T Consensus 247 i~~~~~~-~~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 8776542 22222 12222222222 4799999999999999764
Q ss_pred H------------HHHHHHHHHhc--CCCEEEEEecChhHH
Q psy4347 656 E------------NNILSSLKTAS--RNKTTICIAHRLSTI 682 (816)
Q Consensus 656 e------------~~i~~~l~~~~--~~~T~i~IaHrls~i 682 (816)
. ..+.+.|+++. .+.|+|+|+|-.+..
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~ 331 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQV 331 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccC
Confidence 4 45666666653 379999999975443
No 144
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.23 E-value=7.7e-14 Score=143.92 Aligned_cols=162 Identities=13% Similarity=0.127 Sum_probs=65.7
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh-cCC------------CCCcceEEECCEeCCCCChHHHhhccEEE
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY-RFF------------EPNAGAIYIDGKNINDVDLDSLRRHIAIV 563 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~-gl~------------~p~~G~I~idG~di~~~~~~~lr~~i~~V 563 (816)
....+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +|.+....+...+... +
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---C 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---H
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---h
Confidence 34678999999999999999999999999999999 999 5555544 3433322233222221 1
Q ss_pred cCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhC-CCCccccccCCCCCCChhHHHHH-HHHH-HhccCCC
Q psy4347 564 PQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKW-PNHYETQVGERGLKLSGGEKQRV-AIAR-AILKNTP 640 (816)
Q Consensus 564 ~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~L-P~GydT~VGE~G~~LSGGqrQRi-aiAR-All~~p~ 640 (816)
.++..++..++.+|+ |+.+.. ++.++++... ..|..+ +.|. ..-+++. .-++ .++..|+
T Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~---~i~~~~~~~~--~vild~~~~g~------------~~~~~~~~~~~~~v~v~~~~ 150 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNF-YGVPRK---NLEDNVDKGV--STLLVIDWQGA------------FKFMEMMREHVVSIFIMPPS 150 (231)
T ss_dssp HTTCEEEEEEETTEE-EEEECT---THHHHHHHTC--EEEEECCHHHH------------HHHHHHSGGGEEEEEEECSC
T ss_pred hcCceehhhhhcccc-CCCCHH---HHHHHHHcCC--eEEEEcCHHHH------------HHHHHhcCCCeEEEEEECCc
Confidence 122222233333332 333322 2333332211 111111 0010 1113443 2222 3466778
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEEecChhH
Q psy4347 641 ILVFDEATSSLDSITENNILSSLKTAS------RNKTTICIAHRLST 681 (816)
Q Consensus 641 iLiLDE~Ts~LD~~te~~i~~~l~~~~------~~~T~i~IaHrls~ 681 (816)
..++||++++.|..++..+.+.|++.. +....+++.|.++.
T Consensus 151 ~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~ 197 (231)
T 3lnc_A 151 MEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEE 197 (231)
T ss_dssp HHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHH
Confidence 888999999999999888877765432 12455566665443
No 145
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.22 E-value=1.5e-13 Score=140.53 Aligned_cols=128 Identities=20% Similarity=0.281 Sum_probs=105.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCC---CCCcceEEE--------CCEeCCC-CChHHHhhccEEEcCCC------Cccc
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFF---EPNAGAIYI--------DGKNIND-VDLDSLRRHIAIVPQDP------VLFH 571 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~---~p~~G~I~i--------dG~di~~-~~~~~lr~~i~~V~Q~~------~LF~ 571 (816)
+.+++|+|||||||||++++|.+.| .++.|+|.. +|.++.+ ....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999877 789999988 7887763 45677899999999976 4566
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCcccccc-CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q psy4347 572 DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG-ERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649 (816)
Q Consensus 572 ~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VG-E~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts 649 (816)
.++.+++. ++++..++..+..++++...+.++++.+. ++|.-++|+ .++++++++++++|+++++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 68888863 47888999999999999988877777663 567788887 56778889999999988753
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.19 E-value=5.7e-13 Score=144.11 Aligned_cols=140 Identities=16% Similarity=0.231 Sum_probs=100.1
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEe-------------------eCCcEEEEeCCCCCchhHHHHHHhcCCC--CC
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTI-------------------PAGKSVAIVGGSGSGKSTIIRLLYRFFE--PN 537 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i-------------------~~Ge~vaivG~sGsGKSTl~~ll~gl~~--p~ 537 (816)
.+.|+++||++.|. ++++++||++ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 45699999999992 5899999998 9999999999999999999999999999 99
Q ss_pred cceEEE---CCEeCCCCChHHHhhccEEEcCCCCcc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCcccc
Q psy4347 538 AGAIYI---DGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQ 613 (816)
Q Consensus 538 ~G~I~i---dG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~ 613 (816)
+|+|.+ ||.+.. ...++.+++| |+..++ ..|+.+|+.+.. +...-.+. ...| -||-.
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~------------~l~~~~~~-i~~P-~~~~~ 170 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS------------DLKSGVPN-VTAP-VYSHL 170 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH------------HHTTTCSC-EEEC-CEETT
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH------------HHhCCCCc-eecc-ccccc
Confidence 999999 998742 2456778999 876665 458888876431 00100000 0122 12222
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q psy4347 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653 (816)
Q Consensus 614 VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~ 653 (816)
.+ +|++.+.+.+.+|+++|+|.|....|.
T Consensus 171 ~~-----------~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 171 IY-----------DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TT-----------EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cc-----------CcccccceecCCCCEEEECchhhCCCc
Confidence 21 333333355678999999999988763
No 147
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.17 E-value=3.8e-12 Score=137.26 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=70.9
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEE---CCEeCCCCChHHHhhccEEEcCCCC-------------
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI---DGKNINDVDLDSLRRHIAIVPQDPV------------- 568 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~i---dG~di~~~~~~~lr~~i~~V~Q~~~------------- 568 (816)
|++.+|++++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+|+|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9999876542211246999999985
Q ss_pred ---cc-cccHHHHHhcCCC---CCCHHHHHHHHHHcCCh-hHHHhCC
Q psy4347 569 ---LF-HDTILYNINYGDK---SKSYEETIEAAKLADLH-NSIIKWP 607 (816)
Q Consensus 569 ---LF-~~Ti~eNi~~~~~---~~~~~~i~~a~~~a~l~-~~I~~LP 607 (816)
+| +-|+ +|+.|+.. ......+.++++..++. +...+.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 46 4488 99988532 12345789999999994 6666666
No 148
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.17 E-value=2.3e-11 Score=130.91 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=102.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
+.++++++.|++ . . ++++|+ +|++++++|++||||||++..|++++.+..|+|.+.+.|++.-... .+.
T Consensus 77 ~~~~~l~~~~~~--~-~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~---~ql- 145 (295)
T 1ls1_A 77 TVYEALKEALGG--E-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---EQL- 145 (295)
T ss_dssp HHHHHHHHHTTS--S-C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---HHH-
T ss_pred HHHHHHHHHHCC--C-C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---HHH-
Confidence 566778888854 2 2 788888 9999999999999999999999999999999999999887541111 000
Q ss_pred EEcCCCCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q psy4347 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641 (816)
Q Consensus 562 ~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~i 641 (816)
...++..++.- +|.| ..-...+-||.+|+++...++++
T Consensus 146 -----------------------------~~~~~~~~l~~----~~~~---------~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 146 -----------------------------RLLGEKVGVPV----LEVM---------DGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp -----------------------------HHHHHHHTCCE----EECC---------TTCCHHHHHHHHHHHHHHHTCCE
T ss_pred -----------------------------HHhcccCCeEE----EEcC---------CCCCHHHHHHHHHHHHHhCCCCE
Confidence 00112222211 1111 11234456899999998899999
Q ss_pred EEEeCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEEe
Q psy4347 642 LVFDEA-TSSLDSITENNILSSLKTASRNKTTICIA 676 (816)
Q Consensus 642 LiLDE~-Ts~LD~~te~~i~~~l~~~~~~~T~i~Ia 676 (816)
+|+||| ++++|...-..+.+..+....+.+++++.
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 999999 99999988888887777666666665554
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.14 E-value=5.6e-11 Score=128.63 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=75.4
Q ss_pred eeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCC
Q psy4347 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD 582 (816)
Q Consensus 503 isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~ 582 (816)
++++.++|++++|+|++||||||++..|++++.|+.|+|.+.+.|.... . ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--~-------------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--A-------------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--H-------------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--H-------------------HH-------
Confidence 4556778999999999999999999999999999999999988876321 0 01
Q ss_pred CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH---HHHHHhccCCCEEEEeCCCC
Q psy4347 583 KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV---AIARAILKNTPILVFDEATS 649 (816)
Q Consensus 583 ~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi---aiARAll~~p~iLiLDE~Ts 649 (816)
+++...++..++.- + ..+|||+.|++ +|++|+.++|+++|+|||..
T Consensus 149 -----eqL~~~~~~~gl~~------------~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERVGATV------------I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHTCEE------------E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHcCCcE------------E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 22333344334321 1 24589999999 99999999999999999975
No 150
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.11 E-value=7.3e-12 Score=140.96 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=92.9
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHh
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNIN 579 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~ 579 (816)
-++++|+++.|+.++|||+||||||||++.|++.. | .+.+.+...+ ...+++|+|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~-~-----~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH-P-----KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC-C-----EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC-c-----cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 47999999999999999999999999999999974 3 3555554443 335777777641 1112222222
Q ss_pred cCC-----CCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q psy4347 580 YGD-----KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654 (816)
Q Consensus 580 ~~~-----~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~ 654 (816)
+.. ..... ...+..+.+ +..+.-+.-. +.+ -.+||+||+||+++||+|..+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era--~~lL~vvDls-~~~----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIART--RVLLYVLDAA-DEP----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSS--SEEEEEEETT-SCH----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHH--HhhhEEeCCc-cCC----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 00111 111111111 1111111000 111 246999999999999999999999999 889987
Q ss_pred HHHHHHHHHHH-h-cCCCEEEEEec
Q psy4347 655 TENNILSSLKT-A-SRNKTTICIAH 677 (816)
Q Consensus 655 te~~i~~~l~~-~-~~~~T~i~IaH 677 (816)
.. ...+.+.+ + ..+.+++.||-
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 65 33333333 2 23567776654
No 151
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.11 E-value=6.3e-11 Score=118.83 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=57.7
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccc-cHHHHHh
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TILYNIN 579 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~-Ti~eNi~ 579 (816)
|+++++|++++|+||||||||||+++|+|++ | .+.++|.++........+..++|++|++.+|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 6788999999999999999999999999997 4 689999888776655567889999999988854 6555554
No 152
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.07 E-value=6.9e-12 Score=131.67 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=82.8
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh---cCCCCCcceEE--------ECCEeCC-CCChHHHhhccEEEcC
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY---RFFEPNAGAIY--------IDGKNIN-DVDLDSLRRHIAIVPQ 565 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~---gl~~p~~G~I~--------idG~di~-~~~~~~lr~~i~~V~Q 565 (816)
+++++++ ++|++++|+|||||||||++++|+ |++.|++|.|. .+|.++. ......+++.+++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999999 9999984 4567889999999996
Q ss_pred C------CCcccccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCcccccc
Q psy4347 566 D------PVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG 615 (816)
Q Consensus 566 ~------~~LF~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VG 615 (816)
+ .+++..++.+||. .+++..++..+..++.|......+...++
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a 143 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREALLRRQRAFR 143 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHHHHHHTTC
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 4 4566778888874 25777777777777777665544444333
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.06 E-value=4.8e-11 Score=136.26 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=56.2
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCC
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD 552 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~ 552 (816)
.+.+++... .++|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 456665433 3579999999999 999999999999999999999999999999999999987654
No 154
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=1.7e-11 Score=132.62 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=58.7
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEE---CCEeCCCCChHHHhhccEEEcCCCCccc-----ccHHH
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI---DGKNINDVDLDSLRRHIAIVPQDPVLFH-----DTILY 576 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~i---dG~di~~~~~~~lr~~i~~V~Q~~~LF~-----~Ti~e 576 (816)
+++.+|++++|+||||+|||||+|.|+|+..|+.|+|.+ +|.+++... ..++..+++|+|.|-++. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 898876543 222333899999997654 478 9
Q ss_pred HHh--cC------------C---CCCCHHHHHHHHHHcCChhH
Q psy4347 577 NIN--YG------------D---KSKSYEETIEAAKLADLHNS 602 (816)
Q Consensus 577 Ni~--~~------------~---~~~~~~~i~~a~~~a~l~~~ 602 (816)
|+. |. + .......+.++++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 983 21 0 11223568888888888654
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.03 E-value=1.3e-13 Score=150.66 Aligned_cols=170 Identities=13% Similarity=0.126 Sum_probs=105.6
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCC-------cEEEEeCCCCCchhHHHHHHhcCC----CCCcceEEECCEeCCC
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAG-------KSVAIVGGSGSGKSTIIRLLYRFF----EPNAGAIYIDGKNIND 550 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G-------e~vaivG~sGsGKSTl~~ll~gl~----~p~~G~I~idG~di~~ 550 (816)
++.++++..|+. ..+++++++.+++| +.++|+||+|+|||||+++|++.+ .|++|.+..+|.|+..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 444566666743 46899999999887 899999999999999999999998 7888888877766543
Q ss_pred CChHHHhhccEEEcCCCCcccccHHHHHhcC--CCCCC----HHHHHHHHHHcCChhHHHhCCC-CccccccCCCCCCCh
Q psy4347 551 VDLDSLRRHIAIVPQDPVLFHDTILYNINYG--DKSKS----YEETIEAAKLADLHNSIIKWPN-HYETQVGERGLKLSG 623 (816)
Q Consensus 551 ~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~--~~~~~----~~~i~~a~~~a~l~~~I~~LP~-GydT~VGE~G~~LSG 623 (816)
+.....+..|.+++|...++. ++.|++... ....+ ..+..+.++ . .+|. ++.. ...+-..||+
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~-----~---~l~~~~li~-at~~~~~Ls~ 165 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIR-----I---DIQPFTLVG-ATTRSGLLSS 165 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccccccc-----c---cCCCeEEEE-ecCCcccCCH
Confidence 211112457999999888776 787877421 00000 000000000 0 1111 1111 1122347999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHH
Q psy4347 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIK 683 (816)
Q Consensus 624 GqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~ 683 (816)
|+|||++++ .+||+.+...+.+.|++..+.. -++|..+.+.
T Consensus 166 ~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~~ 206 (334)
T 1in4_A 166 PLRSRFGII----------------LELDFYTVKELKEIIKRAASLM---DVEIEDAAAE 206 (334)
T ss_dssp HHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT---TCCBCHHHHH
T ss_pred HHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHHH
Confidence 999998655 6777777777777776643211 1356655543
No 156
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.99 E-value=1.4e-11 Score=122.89 Aligned_cols=128 Identities=23% Similarity=0.406 Sum_probs=62.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCC-------------CCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHH
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFE-------------PNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILY 576 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~-------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~e 576 (816)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+...++..+. |+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~~---~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHHh---hcceeeEEEEec
Confidence 67899999999999999999999998 888886 888777677766665542 555555555555
Q ss_pred HHhcCCCCCCHHHHHHHHHH-------------------cCChh---HHHh-CCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 577 NINYGDKSKSYEETIEAAKL-------------------ADLHN---SIIK-WPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 577 Ni~~~~~~~~~~~i~~a~~~-------------------a~l~~---~I~~-LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
|+ ||.+ .+++.++++. .+... ||.. -++-+...+-++|..-....+||++-|+
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 54 4433 2222222221 11000 1111 2256677777888887788889999998
Q ss_pred Hhc-----cCCCEEEEeC
Q psy4347 634 AIL-----KNTPILVFDE 646 (816)
Q Consensus 634 All-----~~p~iLiLDE 646 (816)
+-+ +.++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 765 5677777765
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.98 E-value=5.9e-13 Score=141.24 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=97.9
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
-+++++.+.|.. ..+++++++++++| ++|+||||||||||++.|++... .|.|.++|.++.+......++.++
T Consensus 50 ~~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 122 (278)
T 1iy2_A 50 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 122 (278)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence 345677777743 56899999999999 99999999999999999999885 899999998876555555667788
Q ss_pred EEcCCCC-cc-cccHHHHH-hcCCCCC-----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 562 IVPQDPV-LF-HDTILYNI-NYGDKSK-----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 562 ~V~Q~~~-LF-~~Ti~eNi-~~~~~~~-----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
+++|+.. .+ .-++.||| .++.... ..++..+.+ ..++ ..|||||+||+.||+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~lsgg~~~~~~i~~ 182 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVM 182 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH---------HHHH-----------HHHTTCCTTCCEEEE
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEE
Confidence 8888754 33 33566777 3332110 011222221 1111 248999999999999
Q ss_pred HhccCCCEEEEeCC
Q psy4347 634 AILKNTPILVFDEA 647 (816)
Q Consensus 634 All~~p~iLiLDE~ 647 (816)
|+..+|++ ||++
T Consensus 183 a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 183 AATNRPDI--LDPA 194 (278)
T ss_dssp EEESCTTS--SCHH
T ss_pred EecCCchh--CCHh
Confidence 99999987 5654
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.97 E-value=1.3e-13 Score=144.07 Aligned_cols=139 Identities=18% Similarity=0.197 Sum_probs=99.2
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
.+++++.+.|.. ..+++++++++++| ++|+||||||||||++.|++... .|.|.++|.++.+......++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456788777743 56899999999999 99999999999999999999885 899999998876555555567788
Q ss_pred EEcCCCC-cc-cccHHHHH-hcCCCCC-----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 562 IVPQDPV-LF-HDTILYNI-NYGDKSK-----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 562 ~V~Q~~~-LF-~~Ti~eNi-~~~~~~~-----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
.++|+.. .+ .-++.||| .++.... ..++..+.+ ..+. ..|||||+||+.||+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHH-----------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEE
Confidence 8888753 33 33556666 3332110 111222111 1111 247899999999999
Q ss_pred HhccCCCEEEEeCCCC
Q psy4347 634 AILKNTPILVFDEATS 649 (816)
Q Consensus 634 All~~p~iLiLDE~Ts 649 (816)
|+..+|++ ||++.-
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 687654
No 159
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.93 E-value=1.5e-09 Score=116.91 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=82.3
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCH
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSY 587 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~ 587 (816)
++|++++++|++||||||++..|++.+.|++| +.+.++.+|++ ..+..|++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 47999999999999999999999999998888 24566666652 22333333
Q ss_pred HHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q psy4347 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667 (816)
Q Consensus 588 ~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~ 667 (816)
...++..++ | -... .+ ++..+.+|+++ ++|+++|+| |+++|+.....+.+..+-+.
T Consensus 154 ---~~~~~~~gl-------~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 154 ---KTYAELLQA-------P----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp ---HHHHTTTTC-------C----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred ---HHHHHhcCC-------C----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 222222222 1 0011 12 34467788865 999999999 99999877665554433332
Q ss_pred ---CCCEEEEE--ecChhHHHhc
Q psy4347 668 ---RNKTTICI--AHRLSTIKHL 685 (816)
Q Consensus 668 ---~~~T~i~I--aHrls~i~~~ 685 (816)
.+.+++++ +|....+...
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~ 232 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHI 232 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHH
T ss_pred hcCCCeEEEEEECCCCHHHHHHH
Confidence 23456666 8998777663
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.91 E-value=7.4e-11 Score=135.63 Aligned_cols=164 Identities=12% Similarity=0.120 Sum_probs=100.9
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHhc--CCCCCcceEEECCEeCCCCChHHHhh--cc-EEEcCCCCcccccHHH
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR--FFEPNAGAIYIDGKNINDVDLDSLRR--HI-AIVPQDPVLFHDTILY 576 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g--l~~p~~G~I~idG~di~~~~~~~lr~--~i-~~V~Q~~~LF~~Ti~e 576 (816)
-+++++.+|..+.|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. ++ +.|-+|+. -+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHHH
Confidence 4788899999999999999999999999876 77888899999999887655444432 11 11112210 1122
Q ss_pred HHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHH----------HHHHHhccCCC-EEEEe
Q psy4347 577 NINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV----------AIARAILKNTP-ILVFD 645 (816)
Q Consensus 577 Ni~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRi----------aiARAll~~p~-iLiLD 645 (816)
.+.... ...++-.+.++..++.+.- +|+..+. ..+||||+||. ++|+++...|. ++++|
T Consensus 235 ~L~~~~--~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID 304 (512)
T 2ius_A 235 ALRWCV--NEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD 304 (512)
T ss_dssp HHHHHH--HHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred HHHHHH--HHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence 222110 0112223344444543321 2222222 24688888753 46788888998 78899
Q ss_pred CCCCCCCHHHHHHHHHHHH---HhcC--CCEEEEEecChh
Q psy4347 646 EATSSLDSITENNILSSLK---TASR--NKTTICIAHRLS 680 (816)
Q Consensus 646 E~Ts~LD~~te~~i~~~l~---~~~~--~~T~i~IaHrls 680 (816)
|+++.+|.. ...+.+.|. +..+ |.++|++|||++
T Consensus 305 E~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 305 EFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999988843 233444433 2222 789999999998
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.87 E-value=3.3e-11 Score=120.28 Aligned_cols=134 Identities=25% Similarity=0.292 Sum_probs=77.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCC-----------CcceEEECCEeCCC--CChHHHhhccEEEcC---CC--Cc--cc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEP-----------NAGAIYIDGKNIND--VDLDSLRRHIAIVPQ---DP--VL--FH 571 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p-----------~~G~I~idG~di~~--~~~~~lr~~i~~V~Q---~~--~L--F~ 571 (816)
+++|+|++|||||||++.+.|...| ++|+|.++|.++.- ++....++..++++| +. .+ |+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6999999999999999999998765 58999999976531 111111222233332 11 11 11
Q ss_pred ccH---HHHHhcCCCCCCHHHHHHHHHH-cCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCC
Q psy4347 572 DTI---LYNINYGDKSKSYEETIEAAKL-ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647 (816)
Q Consensus 572 ~Ti---~eNi~~~~~~~~~~~i~~a~~~-a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~ 647 (816)
.+- .+|+. ...+..+. .... .| =-.|+.. ..|..-..+...+||+++.+|+++++|
T Consensus 111 ~~~~~s~~~~~---------~~~~~~~~~~~~~-----~~---i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld-- 170 (191)
T 1oix_A 111 IAKHLTYENVE---------RWLKELRDHADSN-----IV---IMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE-- 170 (191)
T ss_dssp TTCHHHHHTHH---------HHHHHHHHHSCTT-----CE---EEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--
T ss_pred CcCHHHHHHHH---------HHHHHHHHhcCCC-----Cc---EEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--
Confidence 110 11111 11111111 1000 00 0011111 112221223478899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy4347 648 TSSLDSITENNILSSLKT 665 (816)
Q Consensus 648 Ts~LD~~te~~i~~~l~~ 665 (816)
||++|......+++.|.+
T Consensus 171 ~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 171 TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 999999999999988865
No 162
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.85 E-value=1e-10 Score=121.40 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=52.3
Q ss_pred cEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh-------
Q psy4347 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL------- 553 (816)
Q Consensus 481 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~------- 553 (816)
.|+++|++..|+ . +|++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 588999876552 1 455666 8999999999999999999999999999999999999844332
Q ss_pred -HHHhhccEEEcCC
Q psy4347 554 -DSLRRHIAIVPQD 566 (816)
Q Consensus 554 -~~lr~~i~~V~Q~ 566 (816)
..++.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346789999984
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.84 E-value=2.2e-10 Score=116.33 Aligned_cols=83 Identities=25% Similarity=0.400 Sum_probs=68.0
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC-------------CCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-------------PNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF 570 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~-------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF 570 (816)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||.|..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34445899999999999999999999999986 78898 799999889999999876 5999999
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHH
Q psy4347 571 HDTILYNINYGDKSKSYEETIEAAK 595 (816)
Q Consensus 571 ~~Ti~eNi~~~~~~~~~~~i~~a~~ 595 (816)
.+++.+| .||.+ .+.+.++++
T Consensus 88 ~~~~~~n-~YGt~---~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGTK---FETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEEE---HHHHHHHHH
T ss_pred hhhhhce-ecccc---hhhHHHHHh
Confidence 9999999 48865 344555443
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.83 E-value=1.4e-10 Score=136.64 Aligned_cols=157 Identities=13% Similarity=0.167 Sum_probs=102.9
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCc-ceEEECCEeCCCCChHHHhhccEEEcCCC--------
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA-GAIYIDGKNINDVDLDSLRRHIAIVPQDP-------- 567 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~-G~I~idG~di~~~~~~~lr~~i~~V~Q~~-------- 567 (816)
..+++++++.+++|+.+.|+||||||||||++.|.++..+.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 568999999999999999999999999999999999999988 8899988776543 34588887754
Q ss_pred --------------Ccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q psy4347 568 --------------VLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632 (816)
Q Consensus 568 --------------~LF-~~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA 632 (816)
..| ..++.+|+..++.......+... ......+.+.. ++.. ......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCC-CC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEec-hhhcCCccccccccccCc
Confidence 111 11223333222110000000000 00000011100 0000 012235999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4347 633 RAILKNTPILVFDEATSSLDSITENNILSSLKT 665 (816)
Q Consensus 633 RAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~ 665 (816)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999999875
No 165
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.73 E-value=1e-09 Score=108.91 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=60.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCC-CcceEE----------ECCEeCCCCChHHHhhccEEEcCCCCcccccHHHH
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIY----------IDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYN 577 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p-~~G~I~----------idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eN 577 (816)
+|++++|+||||||||||+++|++++++ ..|.|. +||.+....+.+.+++. +.|+.+++..++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999874 445553 46777766777777764 568888999999998
Q ss_pred HhcCCCCCCHHHHHHHH
Q psy4347 578 INYGDKSKSYEETIEAA 594 (816)
Q Consensus 578 i~~~~~~~~~~~i~~a~ 594 (816)
.||.+ .+.+.+++
T Consensus 81 -~yg~~---~~~i~~~l 93 (180)
T 1kgd_A 81 -MYGTK---LETIRKIH 93 (180)
T ss_dssp -EEEEE---HHHHHHHH
T ss_pred -ccccc---HHHHHHHH
Confidence 57654 34555554
No 166
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.72 E-value=1.8e-08 Score=110.91 Aligned_cols=122 Identities=20% Similarity=0.356 Sum_probs=72.1
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcce-EEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA-IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKS 584 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~-I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~ 584 (816)
-+++|+.+.|.||+|||||||+..++.-.....|. ++++... ..+. .+.+.+|+.+|+.. +..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~-----------i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL-----------VSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE-----------EECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE-----------EecC-
Confidence 58899999999999999999988777555444444 4444421 1121 12223333322211 1111
Q ss_pred CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC--CCEEEEeCCCCCC----------C
Q psy4347 585 KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN--TPILVFDEATSSL----------D 652 (816)
Q Consensus 585 ~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~--p~iLiLDE~Ts~L----------D 652 (816)
.++ .|-+.++++++++ |+++|+||+++.+ |
T Consensus 122 ------------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 122 ------------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ------------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ------------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 011 2345578888765 9999999999998 3
Q ss_pred H---HHHHHHHHHHHHh-----cCCCEEEEEecChh
Q psy4347 653 S---ITENNILSSLKTA-----SRNKTTICIAHRLS 680 (816)
Q Consensus 653 ~---~te~~i~~~l~~~-----~~~~T~i~IaHrls 680 (816)
+ ...+.+.+.++++ ..++|+|+++|-..
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 2 1222334444333 23799999999654
No 167
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.71 E-value=1.2e-10 Score=129.48 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=89.0
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILY 576 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~e 576 (816)
..+++++|+++++|+.++|+||+|||||||+++|++.+ +|.+..-+ . +.+.++..++++||...+| .|
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HH
Confidence 46899999999999999999999999999999999964 68776511 1 1122344588999987654 23
Q ss_pred HHhcCCC---CC-CHHHHHHHHHHcCChhHHH---------hCCCCccc-----cccCCCCCCChhHHHHHHHHHHhccC
Q psy4347 577 NINYGDK---SK-SYEETIEAAKLADLHNSII---------KWPNHYET-----QVGERGLKLSGGEKQRVAIARAILKN 638 (816)
Q Consensus 577 Ni~~~~~---~~-~~~~i~~a~~~a~l~~~I~---------~LP~GydT-----~VGE~G~~LSGGqrQRiaiARAll~~ 638 (816)
++..... .. +.+.+. ....+.+.+. +-|+-.+. .+.++-..+++|++||++.+.+++.+
T Consensus 224 d~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCC
Confidence 3332221 00 000110 1112222221 01111110 23345567899999999999999999
Q ss_pred CCEEE-EeCCCC
Q psy4347 639 TPILV-FDEATS 649 (816)
Q Consensus 639 p~iLi-LDE~Ts 649 (816)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99999 999987
No 168
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.70 E-value=3.6e-09 Score=125.88 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=98.1
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC--CcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcC
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP--NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG 581 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p--~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~ 581 (816)
|+++++|.+++|+|++|+|||||++.|++...+ +.|+| .+|.++.+....+.++.|++++|...++..++..||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 78999 899999999999999999999999988877666665311
Q ss_pred CCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4347 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661 (816)
Q Consensus 582 ~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~ 661 (816)
|.. .+|. . . ..+-.-..++.++++| ||.++|+.++..+..
T Consensus 82 -pG~--------------~~f~--------------------~--~--~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 -PGY--------------GDFV--------------------G--E--IRGALEAADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp -CCS--------------GGGH--------------------H--H--HHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred -CCc--------------cchH--------------------H--H--HHHHHhhcCcEEEEEc-CCcccchhHHHHHHH
Confidence 111 0110 0 0 1111123566788888 999999988855544
Q ss_pred HHHHhcCCCEEEEEecChhHH
Q psy4347 662 SLKTASRNKTTICIAHRLSTI 682 (816)
Q Consensus 662 ~l~~~~~~~T~i~IaHrls~i 682 (816)
. ++ .+.++|++.|.+...
T Consensus 122 ~-~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 A-ER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp H-HH--TTCCEEEEEECGGGC
T ss_pred H-HH--ccCCEEEEecCCchh
Confidence 3 33 367888999988764
No 169
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.65 E-value=2e-09 Score=108.59 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=64.4
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcC
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG 581 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~ 581 (816)
++-=++++|++++|+|+|||||||++++|.+.++ .+.+++||+++|.+ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3344688899999999999999999999999875 47899999999976 677654
Q ss_pred CCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q psy4347 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649 (816)
Q Consensus 582 ~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts 649 (816)
.+...+.++.++++...+.+++.++.++. + -..++.|.++ ..+++++|+|=|..
T Consensus 67 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~---~---~~~~~~~~~~--------~~~~~~vi~eg~~~ 120 (207)
T 2qt1_A 67 KNGFLQYDVLEALNMEKMMSAISCWMESA---R---HSVVSTDQES--------AEEIPILIIEGFLL 120 (207)
T ss_dssp TTSCBCCSSGGGBCHHHHHHHHHHHHHHH---T---TSSCCC-------------CCCCEEEEECTTC
T ss_pred ccCCChhHHHHHhHHHHHHHHHHHHHhCC---C---CCCcCCCeee--------cCCCCEEEEeehHH
Confidence 43222111212222222233333221110 0 0134555554 45778999987653
No 170
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.62 E-value=3.1e-10 Score=126.65 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=95.7
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhc------------CCCCCcceEEECCEeCCCCCh-HHHhhcc---EEEcCCCCc
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYR------------FFEPNAGAIYIDGKNINDVDL-DSLRRHI---AIVPQDPVL 569 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~g------------l~~p~~G~I~idG~di~~~~~-~~lr~~i---~~V~Q~~~L 569 (816)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. ..-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 678999999998854321100 0001112 356676766
Q ss_pred ccc-cHHHHHhcCCCCCCHHHHHHHHHHcCC-hhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC--CEEEEe
Q psy4347 570 FHD-TILYNINYGDKSKSYEETIEAAKLADL-HNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT--PILVFD 645 (816)
Q Consensus 570 F~~-Ti~eNi~~~~~~~~~~~i~~a~~~a~l-~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p--~iLiLD 645 (816)
..+ |..+++ . .+....++.+.. -..+.... | .....+||+. || +++++|
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~il~Vvd~~~---d----~~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDAIYQVVRAFD---D----AEIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSEEEEEEECCC---T----TCSSCCSSSS------------CHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHHHHHHHhccc---c----ceeeeecccc------------Ccchhhhhch
Confidence 543 322222 1 122222222211 11111111 1 1223356652 99 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHh-cC-CCEEEEEecChhHHHhcc
Q psy4347 646 EATSSLDSITENNILSSLKTA-SR-NKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 646 E~Ts~LD~~te~~i~~~l~~~-~~-~~T~i~IaHrls~i~~~d 686 (816)
||++.+|++......+.++.. .+ |.|+ ++|.+..+....
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~ 189 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAII 189 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHH
Confidence 999999999999998888876 54 4553 399998876654
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.62 E-value=3.9e-09 Score=108.31 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=83.0
Q ss_pred cccceee-eEEeeCCcEEEEeCCCCCchhHHH-HHHhcCCCCCcceEEECCEeCCCCChHHHh---hccEEEcCCCCccc
Q psy4347 497 KRIFSNL-NFTIPAGKSVAIVGGSGSGKSTII-RLLYRFFEPNAGAIYIDGKNINDVDLDSLR---RHIAIVPQDPVLFH 571 (816)
Q Consensus 497 ~~vL~~i-sl~i~~Ge~vaivG~sGsGKSTl~-~ll~gl~~p~~G~I~idG~di~~~~~~~lr---~~i~~V~Q~~~LF~ 571 (816)
.+.|+++ .--+++|+.++|+||+|||||||+ +++....++..+.+++++.. +...++ ..+++.+|+...
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~-- 82 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE-- 82 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH--
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh--
Confidence 3456666 667999999999999999999995 45555555555556665532 333332 235555443210
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc--cCCCEEEEeCCCC
Q psy4347 572 DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL--KNTPILVFDEATS 649 (816)
Q Consensus 572 ~Ti~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll--~~p~iLiLDE~Ts 649 (816)
.+|+.+.+... +.+..++. .+..+-+. +....+.+..++.++ .+|+++++|++|+
T Consensus 83 ---~~~l~~~~~~~---------------~~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 83 ---KGMFAMVDAFT---------------AGIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp ---HTSEEEEECST---------------TTTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred ---CCcEEEEecch---------------hhcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 01221111000 00000000 00000011 112334444444444 4799999999999
Q ss_pred CC--CHHHHHHHHHHHHHh--cCCCEEEEEecChhH
Q psy4347 650 SL--DSITENNILSSLKTA--SRNKTTICIAHRLST 681 (816)
Q Consensus 650 ~L--D~~te~~i~~~l~~~--~~~~T~i~IaHrls~ 681 (816)
-+ |+.........+.+. ..++|+|+++|....
T Consensus 140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 88 553334444444432 247899999998764
No 172
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.60 E-value=2.1e-08 Score=114.00 Aligned_cols=159 Identities=11% Similarity=0.077 Sum_probs=99.0
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc-eEEECCEeCCCCChHHHhhcc-EEEcCCCCcccccH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG-AIYIDGKNINDVDLDSLRRHI-AIVPQDPVLFHDTI 574 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G-~I~idG~di~~~~~~~lr~~i-~~V~Q~~~LF~~Ti 574 (816)
-+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+. +.+...+++++ +....-+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~------- 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN------- 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC-------
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC-------
Confidence 3468888878999999999999999999999999988877555 6766554 34555554432 1111100
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc--cCCCEEEEeCCCCCCC
Q psy4347 575 LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL--KNTPILVFDEATSSLD 652 (816)
Q Consensus 575 ~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll--~~p~iLiLDE~Ts~LD 652 (816)
.+.+.-|. .++++...+.+.. +.+...| -.+-+ ...+|++|.+ +.||++. .+|+++|+|+++...+
T Consensus 260 ~~~l~~g~--l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 260 AQNLRTGK--LTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHTSC--CCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHhcCC--CCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 12233332 3444433222211 1122222 11111 2468999876 6778777 5799999999998874
Q ss_pred H--------HHHHHHHHHHHHhc--CCCEEEEEec
Q psy4347 653 S--------ITENNILSSLKTAS--RNKTTICIAH 677 (816)
Q Consensus 653 ~--------~te~~i~~~l~~~~--~~~T~i~IaH 677 (816)
+ .....+.+.|+.+. .++|+|+++|
T Consensus 328 ~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 328 SGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3 22245566666543 2789999999
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.59 E-value=1.2e-08 Score=101.95 Aligned_cols=135 Identities=23% Similarity=0.287 Sum_probs=74.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC-----CCC------cceEEECCEeCC----CCC-hHHHhhccEEEcCCCC--c--cc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF-----EPN------AGAIYIDGKNIN----DVD-LDSLRRHIAIVPQDPV--L--FH 571 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~-----~p~------~G~I~idG~di~----~~~-~~~lr~~i~~V~Q~~~--L--F~ 571 (816)
+++|+|++|||||||++.++|.. .|+ .|+|.++|.++. +.. .+.++.......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 58999999999999999999974 243 678999997652 222 2333333333333321 1 22
Q ss_pred ccH---HHHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q psy4347 572 DTI---LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648 (816)
Q Consensus 572 ~Ti---~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~T 648 (816)
.+- .+++. .....++..... ..| =-.|+.. ..|..-.......||+++++|+++++| |
T Consensus 87 ~~~~~s~~~~~---------~~~~~~~~~~~~----~~~---i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~ 147 (199)
T 2f9l_A 87 IAKHLTYENVE---------RWLKELRDHADS----NIV---IMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--T 147 (199)
T ss_dssp TTCHHHHHTHH---------HHHHHHHHHSCT----TCE---EEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--C
T ss_pred CcCHHHHHHHH---------HHHHHHHHhcCC----CCe---EEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--E
Confidence 111 11111 111111110000 000 0011211 111111112245699999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy4347 649 SSLDSITENNILSSLKT 665 (816)
Q Consensus 649 s~LD~~te~~i~~~l~~ 665 (816)
||+|......+.+.|.+
T Consensus 148 Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILT 164 (199)
T ss_dssp CTTTCTTHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHH
Confidence 99999999999888765
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.52 E-value=6.1e-08 Score=106.68 Aligned_cols=162 Identities=15% Similarity=0.229 Sum_probs=85.7
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhc--CCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCC-ccc--
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR--FFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPV-LFH-- 571 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g--l~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~-LF~-- 571 (816)
..+|++++++++ .++|||++|||||||++.|.| ++++.+|.+.-.+..+.-.+...-....+..++.+. .|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999999 999999999999999999999 778888877544443321100000112222222211 110
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHH-cC----C---------------hhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q psy4347 572 DTILYNINYGDKSKSYEETIEAAKL-AD----L---------------HNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631 (816)
Q Consensus 572 ~Ti~eNi~~~~~~~~~~~i~~a~~~-a~----l---------------~~~I~~LP~GydT~VGE~G~~LSGGqrQRiai 631 (816)
..+++. +...... .+ + +=.+-.+|.=.++.. +.+.+++++|+..+
T Consensus 101 ~~v~~~------------i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~---~~q~~~~~~~~~~~ 165 (360)
T 3t34_A 101 AAVRKE------------IQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAV---DGQSDSIVKDIENM 165 (360)
T ss_dssp HHHHHH------------HHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCC---TTCCSSHHHHHHHH
T ss_pred HHHHHH------------HHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCc---CCCchhHHHHHHHH
Confidence 011111 1111111 11 0 001223342122222 13467889999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CEEEEEec
Q psy4347 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-N-KTTICIAH 677 (816)
Q Consensus 632 ARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~-~-~T~i~IaH 677 (816)
+++.+++|+++||.-..+..|..+ ....+.++.+.+ + +|++++++
T Consensus 166 ~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 166 VRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999887774333445443 334445555432 3 57777665
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.52 E-value=7.4e-09 Score=108.83 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=36.3
Q ss_pred cEEEEee-EEEeCCCcccccceeeeEEeeC---CcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 481 SIEFRDV-NFSYIDKHTKRIFSNLNFTIPA---GKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 481 ~I~~~~v-sf~Y~~~~~~~vL~~isl~i~~---Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.|+++|| +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999933 46899999999999 9999999999999999999999865
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.51 E-value=3.2e-09 Score=106.90 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=47.8
Q ss_pred EeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceE--EECCEeCCC
Q psy4347 485 RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI--YIDGKNIND 550 (816)
Q Consensus 485 ~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I--~idG~di~~ 550 (816)
+|++..+. ...+.+..++..++|++++|+|||||||||++++|.+.+. ..|.+ ++||.++..
T Consensus 3 ~~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 3 TNIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp -------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred CCCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 34555443 3556788899999999999999999999999999999997 78988 999877653
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.49 E-value=1.9e-08 Score=101.17 Aligned_cols=70 Identities=20% Similarity=0.140 Sum_probs=49.3
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCccc-ccHHHHH
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH-DTILYNI 578 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~-~Ti~eNi 578 (816)
.++.++|++++|+|||||||||++++|.+.+ |.+.+||.++... ....+..+++++|++.++. .++.+|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 4667899999999999999999999999988 9999999887531 1122335788999865553 2444443
No 178
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.48 E-value=3.7e-08 Score=98.53 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=42.2
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF 570 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF 570 (816)
++|++|++++|+|||||||||++++|.+++.|+.| +.+ +...+.... ..+..+++++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~-~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMRE-GEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCT-TCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCC-CccCCCceEEcCHHHH
Confidence 46899999999999999999999999999988666 222 223322211 1223478888876443
No 179
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.48 E-value=2e-08 Score=98.92 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=63.2
Q ss_pred eeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCE--eCCCCCh----HHHhhccEEEcCCCC------
Q psy4347 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK--NINDVDL----DSLRRHIAIVPQDPV------ 568 (816)
Q Consensus 501 ~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~--di~~~~~----~~lr~~i~~V~Q~~~------ 568 (816)
+++++++.+| +++|+||||||||||++.|.+++.+..|...-.+. ++-.... ...+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 99999999999999999999998888775433321 1111110 023457999999853
Q ss_pred ----cccccHHHH----HhcCCCCCCHHHHHHHHHHcCCh
Q psy4347 569 ----LFHDTILYN----INYGDKSKSYEETIEAAKLADLH 600 (816)
Q Consensus 569 ----LF~~Ti~eN----i~~~~~~~~~~~i~~a~~~a~l~ 600 (816)
.+..++..+ +.......+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 112122111 11111224567888888877774
No 180
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.45 E-value=9e-09 Score=119.68 Aligned_cols=90 Identities=22% Similarity=0.210 Sum_probs=63.2
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc-eEE-ECCEeCCC-------CCh---HHHhhccEEEcCCCCccc
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG-AIY-IDGKNIND-------VDL---DSLRRHIAIVPQDPVLFH 571 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G-~I~-idG~di~~-------~~~---~~lr~~i~~V~Q~~~LF~ 571 (816)
...+++|++++|+|+||||||||+++|++.+.|++| +|. +||.++.+ ++. ...++.+++|+|+.
T Consensus 363 ~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l---- 438 (552)
T 3cr8_A 363 PPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI---- 438 (552)
T ss_dssp CCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH----
T ss_pred ccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH----
Confidence 346889999999999999999999999999999997 784 99977643 222 23456688888862
Q ss_pred ccHHHHHhcCCCC----CCHHHHHHHHHHcC
Q psy4347 572 DTILYNINYGDKS----KSYEETIEAAKLAD 598 (816)
Q Consensus 572 ~Ti~eNi~~~~~~----~~~~~i~~a~~~a~ 598 (816)
+..+|+.+.... ...+++.++++..+
T Consensus 439 -~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 -TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp -HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred -HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 345565543221 12345666666555
No 181
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.43 E-value=1.8e-07 Score=106.92 Aligned_cols=116 Identities=21% Similarity=0.288 Sum_probs=77.9
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILY 576 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~e 576 (816)
+..++++++++++| +.|+||+|+|||||++.+.+-... | ++.-+..
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~- 83 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGS- 83 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGG-
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHH-
Confidence 34677888888888 889999999999999999983210 0 1111110
Q ss_pred HHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC--------
Q psy4347 577 NINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT-------- 648 (816)
Q Consensus 577 Ni~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~T-------- 648 (816)
+++.. .+| .|++++|-.+++|....|.||++||+.
T Consensus 84 ------------------------~~~~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 84 ------------------------DFVEL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp ------------------------GTTTC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred ------------------------HHHHH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 11000 012 278899999999999999999999994
Q ss_pred --CCCCHHHHHHHHHHHHHh-----cCCCEEEEEecChhHHH
Q psy4347 649 --SSLDSITENNILSSLKTA-----SRNKTTICIAHRLSTIK 683 (816)
Q Consensus 649 --s~LD~~te~~i~~~l~~~-----~~~~T~i~IaHrls~i~ 683 (816)
++.|.+.++.+.+.+..+ ..+..+|..||+++.+.
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 466776666666665543 23568889999987653
No 182
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.41 E-value=6.5e-08 Score=105.23 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=58.1
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh----HHH-----hhccEEE-cCCCCc
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL----DSL-----RRHIAIV-PQDPVL 569 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~----~~l-----r~~i~~V-~Q~~~L 569 (816)
++++||++++|++++|+|++|+||||++..|++.+.++.|+|++.+.|+..... ..+ +.++.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 467888899999999999999999999999999999999999999988865331 234 5678888 666443
Q ss_pred c
Q psy4347 570 F 570 (816)
Q Consensus 570 F 570 (816)
+
T Consensus 175 ~ 175 (320)
T 1zu4_A 175 D 175 (320)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.40 E-value=5.3e-09 Score=120.20 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=98.4
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccE
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~ 561 (816)
.+++++...|.. +.+++++++++++| +.|+||+|+|||||++.|.+... .|.|.++|.++.+......++++.
T Consensus 41 ~~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~ 113 (499)
T 2dhr_A 41 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 113 (499)
T ss_dssp HHHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHH
T ss_pred HHHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHH
Confidence 345566555632 46899999999999 99999999999999999999875 789999999887765555667788
Q ss_pred EEcCCCC-ccc-ccHHHHH-hcCCCCC-----CHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q psy4347 562 IVPQDPV-LFH-DTILYNI-NYGDKSK-----SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIAR 633 (816)
Q Consensus 562 ~V~Q~~~-LF~-~Ti~eNi-~~~~~~~-----~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiAR 633 (816)
.++|+.. .+. -.+.|+| .++.... ..++..+.+. .++ ..|||||+|+..|++
T Consensus 114 ~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL---------------~~Ldg~~~~~~vivi 173 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLL---------------VEMDGFEKDTAIVVM 173 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHH---------------HHGGGCCSSCCCEEE
T ss_pred HHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHH---------------HHhcccccCccEEEE
Confidence 8888864 232 3455677 3332111 1122222211 111 137788899999999
Q ss_pred HhccCCCEEEEeCCCCC
Q psy4347 634 AILKNTPILVFDEATSS 650 (816)
Q Consensus 634 All~~p~iLiLDE~Ts~ 650 (816)
|...+|++ ||||.-.
T Consensus 174 Aatn~p~~--LD~aLlr 188 (499)
T 2dhr_A 174 AATNRPDI--LDPALLR 188 (499)
T ss_dssp ECCSCGGG--SCTTTSS
T ss_pred EecCChhh--cCccccc
Confidence 99999987 8988753
No 184
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.38 E-value=2e-08 Score=101.89 Aligned_cols=72 Identities=22% Similarity=0.247 Sum_probs=51.7
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCC-CcceEE----------ECCEeCCCCChHHHhhccEEEcCCCCcccccHHH
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIY----------IDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILY 576 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p-~~G~I~----------idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~e 576 (816)
++|+.++|+||||||||||+++|++.++| ..+.+. .+|.+..-.+...+++.+ .|+.+++..++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999987 333333 345555555666666654 4666777777666
Q ss_pred HHhcCCC
Q psy4347 577 NINYGDK 583 (816)
Q Consensus 577 Ni~~~~~ 583 (816)
| .||.+
T Consensus 83 ~-~yg~~ 88 (208)
T 3tau_A 83 N-YYGTP 88 (208)
T ss_dssp E-EEEEE
T ss_pred c-cCCCc
Confidence 6 45543
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=1.3e-07 Score=94.87 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=25.1
Q ss_pred EeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 490 SYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 490 ~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+|++++..++++||||++++|+.++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 566555678999999999999999999999999999999999877
No 186
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.33 E-value=2e-07 Score=103.17 Aligned_cols=137 Identities=19% Similarity=0.236 Sum_probs=84.7
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCC-----------CCcceEEECCEeCCCCChHHHhhccEEEcCCCCc----ccccHHH
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFE-----------PNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVL----FHDTILY 576 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~-----------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L----F~~Ti~e 576 (816)
+++|||++|||||||++.|.|... |+.|.|.++|.++. +....|++.|.|.- |..|. +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 499999999999999999999875 77899999997652 33446766664431 22232 2
Q ss_pred HHhcC-------CC-CCC---HHH---HHHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHH----HHh-cc
Q psy4347 577 NINYG-------DK-SKS---YEE---TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA----RAI-LK 637 (816)
Q Consensus 577 Ni~~~-------~~-~~~---~~~---i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiA----RAl-l~ 637 (816)
.+... +. +.. ++. +.+.++..++. ..| --.|+..-..+|+|++||+.++ +++ ..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 33221 11 111 111 22233322221 112 1223444445788899988887 776 55
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTA 666 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~ 666 (816)
+|++ +|||++|...-..+.+.|.+.
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHH
Confidence 5555 799999999999988888664
No 187
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.30 E-value=2e-07 Score=102.67 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=47.0
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceE-EECCEeCCCCChHHHhhccEEEcCCCCc
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI-YIDGKNINDVDLDSLRRHIAIVPQDPVL 569 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I-~idG~di~~~~~~~lr~~i~~V~Q~~~L 569 (816)
-+++|+++.|.||+|||||||+..+++...+..|.| +||+.+.. + ..+.+++|+.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhhh
Confidence 488999999999999999999999999988888865 66665332 2 2355667877766443
No 188
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.25 E-value=1.8e-06 Score=94.96 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=80.0
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHH
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEET 590 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i 590 (816)
-++++||++|+|||||++.|.+.. +. +++.+....+ ..++.++++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t~~-----~~~~~~~~~~~---------------------- 214 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTTRG-----INVGQFEDGYF---------------------- 214 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCSSC-----EEEEEEEETTE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCeeec-----eeEEEEEecCc----------------------
Confidence 479999999999999999999864 21 2222221111 12333333211
Q ss_pred HHHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCC
Q psy4347 591 IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD-EATSSLDSITENNILSSLKTASRN 669 (816)
Q Consensus 591 ~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLD-E~Ts~LD~~te~~i~~~l~~~~~~ 669 (816)
... +...|.-.+ .....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+
T Consensus 215 -----~~~----l~Dt~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~ 280 (357)
T 2e87_A 215 -----RYQ----IIDTPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD 280 (357)
T ss_dssp -----EEE----EEECTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT
T ss_pred -----eEE----EEeCCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC
Confidence 001 111221111 122468999999887 66666788889999 999999999988888888776557
Q ss_pred CEEEEEe--cChh
Q psy4347 670 KTTICIA--HRLS 680 (816)
Q Consensus 670 ~T~i~Ia--Hrls 680 (816)
+++|+|. |++.
T Consensus 281 ~piilV~NK~Dl~ 293 (357)
T 2e87_A 281 LPFLVVINKIDVA 293 (357)
T ss_dssp SCEEEEECCTTTC
T ss_pred CCEEEEEECcccC
Confidence 8888888 7764
No 189
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.25 E-value=2.2e-06 Score=96.61 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=100.3
Q ss_pred EEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHH-Hhhcc
Q psy4347 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS-LRRHI 560 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~-lr~~i 560 (816)
+-.+++++.|++ .. ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+..-...+ ++..
T Consensus 77 ~v~~~L~~~~~~--~~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGG--EA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTS--SC---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCC--Cc---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 344566777754 21 678887 89999999999999999999999999999999999988876532211 2110
Q ss_pred EEEcCCCCcccccHHHHHhcC--CCCCCHHHHHHHHHHcCChhHHHhC-CCCccccccCCCCCCC---hhHHHHHHHHHH
Q psy4347 561 AIVPQDPVLFHDTILYNINYG--DKSKSYEETIEAAKLADLHNSIIKW-PNHYETQVGERGLKLS---GGEKQRVAIARA 634 (816)
Q Consensus 561 ~~V~Q~~~LF~~Ti~eNi~~~--~~~~~~~~i~~a~~~a~l~~~I~~L-P~GydT~VGE~G~~LS---GGqrQRiaiARA 634 (816)
+ -..|+.+. .+..+..++.. +.+..+ .++||..+=+-...++ ....+..+++++
T Consensus 149 ~------------~~~gv~v~~~~~~~~p~~i~~--------~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 149 G------------EKVGVPVLEVMDGESPESIRR--------RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp H------------HHHTCCEEECCTTCCHHHHHH--------HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred c------------ccCCccEEecCCCCCHHHHHH--------HHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 0 01122110 11123334421 223333 2567766655444443 346777788898
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Q psy4347 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHR 678 (816)
Q Consensus 635 ll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHr 678 (816)
+..++-+|++| ++++.|..... +.+.+. -+.+-|++|+=
T Consensus 209 ~~pd~vlLVvD-a~tgq~av~~a---~~f~~~-l~i~GVIlTKl 247 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEALSVA---RAFDEK-VGVTGLVLTKL 247 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHHHHH---HHHHHH-TCCCEEEEESG
T ss_pred cCCceEEEEEe-ccchHHHHHHH---HHHHhc-CCceEEEEeCc
Confidence 87777788888 55666554322 233321 24677888863
No 190
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.24 E-value=1.5e-07 Score=104.04 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=50.6
Q ss_pred CccEEEEeeEEEeCCCcccccce--------------eeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFS--------------NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~--------------~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+.|+|+||+|.||. ++.+|+ |+++.|.+||+++|+||+|||||||+++|.++.
T Consensus 131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 568999999999987 678999 999999999999999999999999999999986
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.22 E-value=4.5e-08 Score=100.87 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=50.0
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCC------ChHH----HhhccEEEcCCCCccc
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV------DLDS----LRRHIAIVPQDPVLFH 571 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~------~~~~----lr~~i~~V~Q~~~LF~ 571 (816)
+.+.++|++++|+|++||||||++++|.++ .|+|.++|.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 445689999999999999999999999998 79999999876432 1211 2456888888876654
No 192
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.16 E-value=2.2e-06 Score=103.72 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=52.4
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhcCC-CEEEE-EecChhHHHh
Q psy4347 620 KLSGGEKQRVAIARAILKNTPILVFDEATS-SLDSITENNILSSLKTASRN-KTTIC-IAHRLSTIKH 684 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll~~p~iLiLDE~Ts-~LD~~te~~i~~~l~~~~~~-~T~i~-IaHrls~i~~ 684 (816)
-+|+|+.+|..++++++.+++++|+|||.. +||......+.+.+.....+ +++++ .||+...+..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 468999999999999999999999999997 99988777777776665544 55555 4898776654
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.09 E-value=6.3e-07 Score=87.53 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=41.7
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhh-ccEEEcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR-HIAIVPQD 566 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~-~i~~V~Q~ 566 (816)
.+|++++|+|+|||||||+++.|.+.+ |.+.+|+.++.. ...+++ .+|+++|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 469999999999999999999999976 899999977653 222332 46777665
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.07 E-value=1.1e-06 Score=95.27 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=73.9
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCC-CC------CcceEEECCEeCCCCChHHHhhc---cEEEcCCCCcccccHH
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFF-EP------NAGAIYIDGKNINDVDLDSLRRH---IAIVPQDPVLFHDTIL 575 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~-~p------~~G~I~idG~di~~~~~~~lr~~---i~~V~Q~~~LF~~Ti~ 575 (816)
-+++|+.+.|.||+|||||||+..++.-. .| ..+.++|+...- ++.+.+++. +++-+ ..+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~-------~~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDI-------DNVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCH-------HHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCH-------HHHh
Confidence 58999999999999999999998877643 34 334566655321 233333221 21111 0122
Q ss_pred HHHhcCCCCCCHHHHHHHHHHcCChhHHHhCCCCccccccCCCCCCCh-hHHHHHHHHHHhc---cCCCEEEEeCCCCCC
Q psy4347 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG-GEKQRVAIARAIL---KNTPILVFDEATSSL 651 (816)
Q Consensus 576 eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSG-GqrQRiaiARAll---~~p~iLiLDE~Ts~L 651 (816)
+|+.+.++ .++ -+.+.+..+++++ .+|+++|+|+.++-.
T Consensus 174 ~~l~~~~~-------------------------------------~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 174 NNIYYIRA-------------------------------------INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HTEEEEEC-------------------------------------CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred ccEEEEeC-------------------------------------CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 22222211 111 1345677777777 579999999999876
Q ss_pred CHH-------H--H---HHHHHHHHHhc--CCCEEEEEecChhH
Q psy4347 652 DSI-------T--E---NNILSSLKTAS--RNKTTICIAHRLST 681 (816)
Q Consensus 652 D~~-------t--e---~~i~~~l~~~~--~~~T~i~IaHrls~ 681 (816)
+.+ . . ..+...|+++. .++|+|++.|-...
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 431 1 1 23333344332 27899999886543
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.04 E-value=1.5e-06 Score=87.29 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=74.2
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHhcCCCCCCHHHHH
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETI 591 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~~~~~~~~~~~i~ 591 (816)
+++|+|++||||||+.++|.++ |...+|+- .+.+.+. + +. .+.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d--------~~~~~~~---~-----------------~~--~~~~~ 48 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD--------VVAREVV---A-----------------KD--SPLLS 48 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH--------HHHHHTT---C-----------------SS--CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH--------HHHHHHc---c-----------------CC--hHHHH
Confidence 6999999999999999999983 55555542 2221111 0 00 01222
Q ss_pred HHHHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCE
Q psy4347 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKT 671 (816)
Q Consensus 592 ~a~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T 671 (816)
+..+..|. . .-.+.|+.+|..+++.++.+|+.+-.+ ++.++|...+.+.+.+... .+.+
T Consensus 49 ~i~~~~g~-----------------~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~ 107 (206)
T 1jjv_A 49 KIVEHFGA-----------------Q-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPY 107 (206)
T ss_dssp HHHHHHCT-----------------T-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSE
T ss_pred HHHHHhCH-----------------H-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCE
Confidence 22222221 1 123678999999999999888754433 3355666666666666543 3567
Q ss_pred EEEEecChhHH---HhccCeEEEEcChhHHhh
Q psy4347 672 TICIAHRLSTI---KHLLGYKAHRKTSTNLVR 700 (816)
Q Consensus 672 ~i~IaHrls~i---~~~dg~i~~~g~~~~L~~ 700 (816)
+|+-+|.+... ..+|-.|....+.+++.+
T Consensus 108 vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~ 139 (206)
T 1jjv_A 108 TLFVVPLLIENKLTALCDRILVVDVSPQTQLA 139 (206)
T ss_dssp EEEECTTTTTTTCGGGCSEEEEEECCHHHHHH
T ss_pred EEEEechhhhcCcHhhCCEEEEEECCHHHHHH
Confidence 88888887654 334433344455555444
No 196
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.98 E-value=4.9e-06 Score=93.88 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=37.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN 549 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~ 549 (816)
++.+++++|++||||||++..|++.+.+..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 47899999999999999999999999999999999877754
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.95 E-value=1.8e-06 Score=86.90 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=42.1
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCCh
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL 553 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~ 553 (816)
..++|++++|+|+|||||||+++.|.+++.|..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 367899999999999999999999999999999999988877655544
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.93 E-value=7.8e-06 Score=89.43 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=78.5
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHH
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYN 577 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eN 577 (816)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.| .|+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fS------------- 81 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFS------------- 81 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEE-------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEe-------------
Confidence 34666666799999999999999999999988776443322222 2221
Q ss_pred HhcCCCCCCHHHHHHH--HHHcCChh-HHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q psy4347 578 INYGDKSKSYEETIEA--AKLADLHN-SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654 (816)
Q Consensus 578 i~~~~~~~~~~~i~~a--~~~a~l~~-~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~ 654 (816)
.+.+.+++..- +..+++.- -+.. ..||++++||++.|...+.+++++|.|+|...+|
T Consensus 82 -----lEms~~ql~~Rlls~~~~v~~~~l~~-------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-- 141 (338)
T 4a1f_A 82 -----LEMSAEQLALRALSDLTSINMHDLES-------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-- 141 (338)
T ss_dssp -----SSSCHHHHHHHHHHHHHCCCHHHHHH-------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--
T ss_pred -----CCCCHHHHHHHHHHHhhCCCHHHHhc-------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--
Confidence 11233333221 12223311 1111 2699999999999999999999999999876543
Q ss_pred HHHHHHHHHHHhc--C-CCEEEEEec
Q psy4347 655 TENNILSSLKTAS--R-NKTTICIAH 677 (816)
Q Consensus 655 te~~i~~~l~~~~--~-~~T~i~IaH 677 (816)
.|.+.++++. . +..+|+|-|
T Consensus 142 ---~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 ---QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp ---HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ---HHHHHHHHHHHhcCCCCEEEEec
Confidence 3333333321 2 567777744
No 199
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.91 E-value=6e-07 Score=97.61 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=39.0
Q ss_pred cccceeeeEEeeCCc------EEEEeCCCCCchhHHHHHHhcCCC--CCcceEEE
Q psy4347 497 KRIFSNLNFTIPAGK------SVAIVGGSGSGKSTIIRLLYRFFE--PNAGAIYI 543 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge------~vaivG~sGsGKSTl~~ll~gl~~--p~~G~I~i 543 (816)
...|++++..+.+++ ++||+|||||||||++++|.++++ |++|.|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 467888888888776 999999999999999999999998 45555433
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.88 E-value=2.6e-05 Score=85.02 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=35.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEEecChhHHHhcc
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTAS----RNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~----~~~T~i~IaHrls~i~~~d 686 (816)
.+|.+|+|||+... |......+.+.+.+.. .+.++|+++|+.......+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 8877777777665432 3678889999986554443
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.86 E-value=7.1e-06 Score=89.83 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=25.7
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl 533 (816)
-+++|+.+.|.||+|||||||+..++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988874
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.82 E-value=5.8e-05 Score=79.88 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=40.2
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhcC-----CCEEEEEecChh
Q psy4347 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSI----------TENNILSSLKTASR-----NKTTICIAHRLS 680 (816)
Q Consensus 622 SGGqrQRiaiARAll~~p~iLiLDE~Ts~LD~~----------te~~i~~~l~~~~~-----~~T~i~IaHrls 680 (816)
++++++|..+++|...+|.+|++||+.+.++.. ....++..+..... +..+|..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 367888888999988999999999998776532 22234444544321 245667788765
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=4.2e-06 Score=90.89 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=39.2
Q ss_pred cccceeeeEEeeCCcE--EEEeCCCCCchhHHHHHHhcCCCCCcce
Q psy4347 497 KRIFSNLNFTIPAGKS--VAIVGGSGSGKSTIIRLLYRFFEPNAGA 540 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~--vaivG~sGsGKSTl~~ll~gl~~p~~G~ 540 (816)
..+++.++..|+.|+. +.+.||+|+||||+++.+++.+.+..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 4689999999999998 9999999999999999999988766554
No 204
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.74 E-value=2.6e-05 Score=82.24 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=43.7
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhcc
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLL 686 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~d 686 (816)
|++|||||..+|++++||||| |+++...+.+ ....|.|+++++|+.+....+|
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~d 140 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIH 140 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHH
Confidence 899999999999999999999 9988665444 3345899999999988655443
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.72 E-value=3.1e-06 Score=83.07 Aligned_cols=41 Identities=34% Similarity=0.484 Sum_probs=34.4
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc--eEEECCEeCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG--AIYIDGKNIN 549 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G--~I~idG~di~ 549 (816)
++|+.++|+|++||||||++++|.+.+.| .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 67 6777775554
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.65 E-value=0.0001 Score=79.08 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=50.0
Q ss_pred EEEeeEEEeCCCccccccee-eeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC
Q psy4347 483 EFRDVNFSYIDKHTKRIFSN-LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~-isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~ 550 (816)
..+++...|++ .. ++ ++|+.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 76 ~~~~l~~~~~~--~~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 76 VYDELSNLFGG--DK---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHHTTC--SC---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHHhcc--cc---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34455555643 11 45 788877 99999999999999999999999999999999998888764
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.59 E-value=8.4e-06 Score=99.04 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=29.6
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
+|.+++|+.+.|+||||||||||++.|++.+.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 347899999999999999999999999998743
No 208
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.59 E-value=1.6e-05 Score=79.31 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=31.9
Q ss_pred EEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 488 NFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 488 sf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
+|+|++ -.++++++|++.+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 467765 457899999998888 489999999999999999986
No 209
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.59 E-value=1.1e-05 Score=93.81 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=51.4
Q ss_pred EEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEE
Q psy4347 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562 (816)
Q Consensus 483 ~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~ 562 (816)
-+++|...|. +..+++++++++ +|+.+.|+||||||||||++.|.+...+..|.|.++|......-....++.+|+
T Consensus 85 G~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~ 160 (543)
T 3m6a_A 85 GLEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGA 160 (543)
T ss_dssp SCHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------------
T ss_pred cHHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhcc
Confidence 3456666663 346788999998 899999999999999999999999999999999988854322112233456676
Q ss_pred EcCC
Q psy4347 563 VPQD 566 (816)
Q Consensus 563 V~Q~ 566 (816)
++|.
T Consensus 161 ~~~~ 164 (543)
T 3m6a_A 161 MPGR 164 (543)
T ss_dssp ---C
T ss_pred CchH
Confidence 6664
No 210
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.58 E-value=7e-05 Score=76.96 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=72.7
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcc-cccHHHHHhcCCCCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSK 585 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF-~~Ti~eNi~~~~~~~ 585 (816)
+.+|+.+.++|||||||||++.+++.-.....|. ...++++.+.|... ..++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4568999999999999999888764321111111 23467788888766 447778875321100
Q ss_pred CHHHHHHHHHHcCChhHHHhCCCCcccc----ccCCCCC---CChhHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHH
Q psy4347 586 SYEETIEAAKLADLHNSIIKWPNHYETQ----VGERGLK---LSGGEKQRVAIARAILKNTPILVFDEATS-SLDSITEN 657 (816)
Q Consensus 586 ~~~~i~~a~~~a~l~~~I~~LP~GydT~----VGE~G~~---LSGGqrQRiaiARAll~~p~iLiLDE~Ts-~LD~~te~ 657 (816)
.+ ...||... ....+.. -+.|+-.+. .+..+++-+++|+||+=. ++|.....
T Consensus 137 -----------~~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 -----------PG-------KSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp -----------TT-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred -----------cC-------ceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHH
Confidence 00 00122111 1101111 234655554 344689999999999976 57776664
Q ss_pred HHHHHHHHhcCCC
Q psy4347 658 NILSSLKTASRNK 670 (816)
Q Consensus 658 ~i~~~l~~~~~~~ 670 (816)
...+.+.....+.
T Consensus 197 ~~l~~i~~~~~~~ 209 (235)
T 3llm_A 197 VVLRDVVQAYPEV 209 (235)
T ss_dssp HHHHHHHHHCTTS
T ss_pred HHHHHHHhhCCCC
Confidence 4555554444443
No 211
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.58 E-value=0.00026 Score=72.67 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCCcc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAG 539 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~~G 539 (816)
+++|||++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999997766655
No 212
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.58 E-value=5.3e-05 Score=85.69 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=33.8
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHh-cCCCEEEEEecCh
Q psy4347 637 KNTPILVFDEATSSLDS-ITENNILSSLKTA-SRNKTTICIAHRL 679 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~-~te~~i~~~l~~~-~~~~T~i~IaHrl 679 (816)
.+|++|++||+..-.+. .+...+...+..+ ..++++|+.||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999887764 5677787887764 3468899999983
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.56 E-value=0.0002 Score=74.24 Aligned_cols=46 Identities=28% Similarity=0.442 Sum_probs=30.8
Q ss_pred cceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeC
Q psy4347 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548 (816)
Q Consensus 499 vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di 548 (816)
.++++++.+++| +.|+||+|+||||+++.+.+.+... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 455666666665 9999999999999999999977532 355555443
No 214
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.54 E-value=4.3e-05 Score=86.27 Aligned_cols=70 Identities=29% Similarity=0.444 Sum_probs=43.9
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC------------CCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccc-cHHHH
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF------------EPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TILYN 577 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~------------~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~-Ti~eN 577 (816)
-++||||+||+|||||++.|+|.. +|.+|.+.++|.++.-+|..-+++..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 369999999999999999999985 37889999999977655555556666666676666632 34455
Q ss_pred Hhc
Q psy4347 578 INY 580 (816)
Q Consensus 578 i~~ 580 (816)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 215
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.54 E-value=2.4e-05 Score=84.86 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=27.4
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G 539 (816)
.++..+.|.||+|+|||||++.+.+...+..|
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~ 74 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999998766443
No 216
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.51 E-value=1.3e-05 Score=80.97 Aligned_cols=44 Identities=32% Similarity=0.355 Sum_probs=38.8
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcc--eEEECCEeC
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG--AIYIDGKNI 548 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G--~I~idG~di 548 (816)
+.+++|..++|+|++||||||+++.|.+.+.|+.| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45788999999999999999999999999988889 888886443
No 217
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.49 E-value=1.4e-05 Score=87.32 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=48.1
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~ 550 (816)
..+++++++++++|.+++|+|++|+||||+++.|++.+.+..|+|.+-+.|...
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 468899999999999999999999999999999999999988998887776543
No 218
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.48 E-value=3.8e-05 Score=74.43 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=28.2
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG 545 (816)
.|+.++|+|+|||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 56654
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.46 E-value=3.9e-05 Score=79.10 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=32.5
Q ss_pred ceeeeEEee---CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEEC
Q psy4347 500 FSNLNFTIP---AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544 (816)
Q Consensus 500 L~~isl~i~---~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~id 544 (816)
|.++||+++ +|..++|.|++||||||++++|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 556666665 8999999999999999999999999988 6666543
No 220
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.45 E-value=5.5e-05 Score=81.73 Aligned_cols=108 Identities=13% Similarity=0.144 Sum_probs=67.5
Q ss_pred cccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHH
Q psy4347 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILY 576 (816)
Q Consensus 497 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~e 576 (816)
-+.|+++.--+++|+.+.|.|++|+|||||+.-++.-.-- . | ..+.|+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~------g------------~~vl~~s------------ 103 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-N------D------------DVVNLHS------------ 103 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-T------T------------CEEEEEE------------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c------C------------CeEEEEE------------
Confidence 3457777766999999999999999999998877742210 0 1 1123322
Q ss_pred HHhcCCCCCCHHHHHHHHH--HcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCC
Q psy4347 577 NINYGDKSKSYEETIEAAK--LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651 (816)
Q Consensus 577 Ni~~~~~~~~~~~i~~a~~--~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~L 651 (816)
.+.+.+++..-+. .+++. +.++-.|- ..||++++||++.|...+.++++++.|+|+..+
T Consensus 104 ------lE~s~~~l~~R~~~~~~~i~--~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 104 ------LEMGKKENIKRLIVTAGSIN--AQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp ------SSSCHHHHHHHHHHHHTTCC--HHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred ------CCCCHHHHHHHHHHHHcCCC--HHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 1223344333221 22331 11111110 128999999999999999999999999987543
No 221
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.43 E-value=0.00014 Score=77.89 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=74.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEEC-CEeCCCCChHHHhhccEEEcCCCCc--ccccHHHHHhcCCCCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID-GKNINDVDLDSLRRHIAIVPQDPVL--FHDTILYNINYGDKSK 585 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~id-G~di~~~~~~~lr~~i~~V~Q~~~L--F~~Ti~eNi~~~~~~~ 585 (816)
++.++||||++|+|||||++.|+|.- +.+. +.+-. ..++..++++++..- |-+| |..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT---------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT---------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS---------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC---------cCC
Confidence 34589999999999999999999852 2221 11111 123456777776431 2222 222
Q ss_pred CHHHHHHHHH--HcCChhHHHhCCCCcccc--ccCCCCCCChhHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH-HHH
Q psy4347 586 SYEETIEAAK--LADLHNSIIKWPNHYETQ--VGERGLKLSGGEKQRVAIARAIL--KNTPILVFDEATSSLDSIT-ENN 658 (816)
Q Consensus 586 ~~~~i~~a~~--~a~l~~~I~~LP~GydT~--VGE~G~~LSGGqrQRiaiARAll--~~p~iLiLDE~Ts~LD~~t-e~~ 658 (816)
.. +-..... .... ....+ ...|.. |-+... +|+|++ .+++++. ..|.++++ +-+|... ...
T Consensus 67 ~~-~~~~~l~~~~~~~--~~~~l-~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 67 HM-EEKRAINRLMNKA--ASSSI-GDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp CH-HHHHHHHHHHTCC--TTSCC-CCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred Cc-cchhhHHHHHHHH--HHHHH-hcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 20 1011111 0000 00001 122221 122223 899886 5667766 67889988 5677665 445
Q ss_pred HHHHHHHhcC--C--CEEEEEecChhHHH
Q psy4347 659 ILSSLKTASR--N--KTTICIAHRLSTIK 683 (816)
Q Consensus 659 i~~~l~~~~~--~--~T~i~IaHrls~i~ 683 (816)
+.+.+.++.+ + .++.+.||.-..+.
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 5555555432 2 35556677655443
No 222
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.42 E-value=9e-06 Score=84.47 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=49.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHh---cCCCCCcceE--------EECCEeCCCCC-hHHHhhccEEEc------CCCCccc
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLY---RFFEPNAGAI--------YIDGKNINDVD-LDSLRRHIAIVP------QDPVLFH 571 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~---gl~~p~~G~I--------~idG~di~~~~-~~~lr~~i~~V~------Q~~~LF~ 571 (816)
.-+++|+|||||||||+.+.|. |+...+.|.+ .-.|.|+.+.. ...+...+.+++ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 5555667766 34577666543 456666777777 4455555
Q ss_pred ccHHHHHh
Q psy4347 572 DTILYNIN 579 (816)
Q Consensus 572 ~Ti~eNi~ 579 (816)
..|.++|+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 56666553
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.35 E-value=3.2e-05 Score=77.67 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=26.4
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
...+|..++|+|||||||||+++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998774
No 224
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.30 E-value=5.7e-05 Score=82.85 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=37.5
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~ 550 (816)
++|.+++|+|++|||||||++.|.|.+.|++|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3578899999999999999999999999999999998877654
No 225
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.24 E-value=0.00059 Score=75.08 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=33.5
Q ss_pred cccceeeeEE---eeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-cceEEECC
Q psy4347 497 KRIFSNLNFT---IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDG 545 (816)
Q Consensus 497 ~~vL~~isl~---i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-~G~I~idG 545 (816)
.+.|+.+ +. +++|+.+.|.|++|||||||+.-++.-.... ...++|+.
T Consensus 48 ~~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 48 SLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3446554 33 8899999999999999999987776543322 23445554
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.24 E-value=0.00016 Score=71.33 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=20.7
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
.+++++|++.++. +++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3788999998887 789999999999999999987
No 227
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.24 E-value=0.00016 Score=77.61 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=24.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~ 537 (816)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999876543
No 228
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.24 E-value=0.00027 Score=74.86 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=27.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceE
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I 541 (816)
...+.|+||+|+||||+++.+.+...+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999987776653
No 229
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=7e-05 Score=80.74 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhH
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLST 681 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~ 681 (816)
+++++++|| .-.+++.....+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6778998888899988886555667777877653
No 230
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.18 E-value=0.00056 Score=73.04 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=28.1
Q ss_pred eEEeeCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 504 sl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
++.++++..+.|.||+|+|||||++.+.+...
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34578899999999999999999999998763
No 231
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.18 E-value=0.00031 Score=69.89 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.7
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPN 537 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~ 537 (816)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999866543
No 232
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.16 E-value=0.00021 Score=72.10 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=24.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
++..+.|.||+|+||||+++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876543
No 233
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.13 E-value=2.1e-05 Score=77.93 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|+|++||||||++++|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 234
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.11 E-value=0.00029 Score=68.45 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.5
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++|.+++|||++|+|||||++.+.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 235
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.08 E-value=0.0002 Score=71.44 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=33.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
.+|.+|++||+-. +|......+.+.+.+...+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4578999999866 788888888888876555677888888765
No 236
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.98 E-value=0.0011 Score=69.53 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.8
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++++..+.|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4667789999999999999999998864
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.97 E-value=0.00032 Score=69.23 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=26.9
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl 533 (816)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999886
No 238
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.94 E-value=0.00011 Score=80.95 Aligned_cols=59 Identities=25% Similarity=0.282 Sum_probs=37.4
Q ss_pred CccEEEEeeEEEeCCCcccccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCE
Q psy4347 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK 546 (816)
Q Consensus 479 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~ 546 (816)
.+.|.|+|++..|.. +.++++++|+| +|||++|+|||||++.|.+...+..|.+..++.
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 466999999998853 56899999977 999999999999999999876666665554443
No 239
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.93 E-value=0.0024 Score=60.46 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHR 678 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHr 678 (816)
+..+|++||.- .|++.....+.+.|.....+..+|..|.+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 45789999984 67888888888888554444556666654
No 240
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.91 E-value=0.00027 Score=69.51 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=33.8
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceE-EECC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI-YIDG 545 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I-~idG 545 (816)
..++|..++|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 356799999999999999999999999988777765 4543
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.87 E-value=0.00037 Score=75.00 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.5
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999999987764
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.85 E-value=0.00028 Score=73.41 Aligned_cols=43 Identities=28% Similarity=0.474 Sum_probs=35.7
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~ 550 (816)
..++|..+.|+|++||||||+.+.|.+.+. .|.+.+||-+++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 567789999999999999999999999875 3678888865543
No 243
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.83 E-value=0.0028 Score=68.70 Aligned_cols=43 Identities=30% Similarity=0.423 Sum_probs=33.0
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN 549 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~ 549 (816)
..+|..+.|.||+|+||||+++.+.........-+.+++..+.
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 3457789999999999999999999887654455666554433
No 244
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.79 E-value=0.00068 Score=65.10 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=23.4
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHh
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLY 531 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~ 531 (816)
+.++++.+| ..+|+|||||||||++..|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555554 89999999999999999987
No 245
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.78 E-value=0.00031 Score=70.03 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=28.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di 548 (816)
+..++|+|++||||||+++.|.+.+ |.+.+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999999876 5666665443
No 246
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.77 E-value=0.0011 Score=74.75 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=63.8
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHH
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYN 577 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eN 577 (816)
+.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| . .+.|+.=
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~------------~vl~~sl------------ 237 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------V------------GVGIYSL------------ 237 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------C------------CEEEEES------------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------C------------eEEEEEC------------
Confidence 346666655899999999999999999999887764432211 0 1222211
Q ss_pred HhcCCCCCCHHHHHHH--HHHcCChhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC
Q psy4347 578 INYGDKSKSYEETIEA--AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650 (816)
Q Consensus 578 i~~~~~~~~~~~i~~a--~~~a~l~~~I~~LP~GydT~VGE~G~~LSGGqrQRiaiARAll~~p~iLiLDE~Ts~ 650 (816)
..+.+++..- +...++.- .++ . . ..|+..+++|+.-|-..+.+.++.+.|+|...
T Consensus 238 ------E~~~~~l~~R~~~~~~~i~~--~~l----~-----~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 238 ------EMPAAQLTLRMMCSEARIDM--NRV----R-----L-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp ------SSCHHHHHHHHHHHHTTCCT--TTC----C-----G-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred ------CCCHHHHHHHHHHHHcCCCH--HHH----h-----C-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 1223333322 22233311 111 1 1 25888999998888777778888888876443
No 247
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.71 E-value=0.0016 Score=73.68 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHH
Q psy4347 623 GGEKQRVAIARAILKNTPILVFDEA-TSSLDSITENNILSSLKTASRNKTTICIAHRLSTIK 683 (816)
Q Consensus 623 GGqrQRiaiARAll~~p~iLiLDE~-Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~ 683 (816)
+.|.+-...+...+++++++|+... +.++.... ..+.+.+++ .++.+|+|.+......
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccchh
Confidence 3588888899999999998886544 44455544 456666654 4788999998877653
No 248
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.70 E-value=0.0013 Score=62.92 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.1
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
-+++|+|++|+|||||++.+.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3699999999999999999998643
No 249
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.65 E-value=0.0009 Score=64.94 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
No 250
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.62 E-value=0.00083 Score=74.86 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=35.0
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcC-----------CCCCcceEEECCE
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRF-----------FEPNAGAIYIDGK 546 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl-----------~~p~~G~I~idG~ 546 (816)
.+..|.+++|||++|+|||||++.|.|. .+|+.|.|.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 7899999988764
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.62 E-value=0.0046 Score=68.27 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.7
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 378999999999999999999876654
No 252
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.58 E-value=0.00077 Score=66.70 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=30.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCC---cceEEECCEeC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNI 548 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~---~G~I~idG~di 548 (816)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 3679999999999999999999886543 47888877653
No 253
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.49 E-value=0.0012 Score=65.70 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 254
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.43 E-value=0.006 Score=66.68 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.8
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++...+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998754
No 255
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.41 E-value=0.0014 Score=72.57 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=38.7
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhcC-CCEEEEEecChhHHHh
Q psy4347 637 KNTPILVFDEATSSLD---SITENNILSSLKTASR-NKTTICIAHRLSTIKH 684 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD---~~te~~i~~~l~~~~~-~~T~i~IaHrls~i~~ 684 (816)
..|.++++||+=.-++ +.....+.+.+++.++ +..++++||+++.+..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~ 312 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLA 312 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGS
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhC
Confidence 3588999999988884 6677778888887654 7899999999987753
No 256
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.41 E-value=0.0082 Score=61.61 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=22.8
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++...+.|.||+|+||||+++.+...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999998754
No 257
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.38 E-value=0.0016 Score=63.57 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPN 537 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~ 537 (816)
+++|||++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
No 258
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.35 E-value=0.0086 Score=67.63 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=31.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di 548 (816)
++.+++++|++|+||||++.-|+..+....-+|.+=..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4578999999999999999999988876555665533343
No 259
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.34 E-value=0.0015 Score=64.48 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=27.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEe
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN 547 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~d 547 (816)
..+++|+|++||||||+.++|... |-..+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 457999999999999999999985 777776543
No 260
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.33 E-value=0.0057 Score=63.32 Aligned_cols=59 Identities=7% Similarity=0.048 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEEecChhH
Q psy4347 622 SGGEKQRVAIARAIL---KNTPILVFDEATSSLDSITENNILSSLKTAS----RNKTTICIAHRLST 681 (816)
Q Consensus 622 SGGqrQRiaiARAll---~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~----~~~T~i~IaHrls~ 681 (816)
+.|++.+-.+.|++. ++|+++|+--..+.++.. +..+.+.+.+.. .++++|+++|....
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344666667777774 889887765444455544 445555555532 25799999997654
No 261
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.32 E-value=0.0034 Score=61.47 Aligned_cols=35 Identities=40% Similarity=0.623 Sum_probs=26.5
Q ss_pred EEEEeCCCCCchhHHHHH-HhcC----CCCCcc----eEEECCE
Q psy4347 512 SVAIVGGSGSGKSTIIRL-LYRF----FEPNAG----AIYIDGK 546 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~l-l~gl----~~p~~G----~I~idG~ 546 (816)
+++|+|++|+|||||++- +.+- +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 599999999999999964 4444 667766 5556654
No 262
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.31 E-value=0.0016 Score=63.46 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.6
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.29 E-value=0.0013 Score=65.74 Aligned_cols=64 Identities=33% Similarity=0.597 Sum_probs=42.8
Q ss_pred EEEeCCCCCchhHHHHHHhcCC-------------CCCcceEEECCEeCCCCChHHHhhccEEEcCCCCcccccHHHHHh
Q psy4347 513 VAIVGGSGSGKSTIIRLLYRFF-------------EPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNIN 579 (816)
Q Consensus 513 vaivG~sGsGKSTl~~ll~gl~-------------~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~Ti~eNi~ 579 (816)
+.|+||||||||||++-|+.-+ +|-.|++ ||+|..-++.+.+.+.+. ++-+|-...+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHHH---cCCEEEEEEEcCc-e
Confidence 7899999999999999886433 3456664 788777777777666543 4444444444433 3
Q ss_pred cCC
Q psy4347 580 YGD 582 (816)
Q Consensus 580 ~~~ 582 (816)
||-
T Consensus 78 YGt 80 (186)
T 1ex7_A 78 YGS 80 (186)
T ss_dssp EEE
T ss_pred eee
Confidence 443
No 264
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.26 E-value=0.0019 Score=69.85 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=24.7
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999988663
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.25 E-value=0.0022 Score=62.05 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=23.9
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
.|..+.|+|+|||||||+.+.|..-+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998664
No 266
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.20 E-value=0.00075 Score=74.11 Aligned_cols=37 Identities=35% Similarity=0.483 Sum_probs=33.9
Q ss_pred ccceeeeEEeeCCcE--EEEeCCCCCchhHHHHHHhcCC
Q psy4347 498 RIFSNLNFTIPAGKS--VAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~--vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578899999999999 9999999999999999998864
No 267
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.17 E-value=0.0077 Score=59.15 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=30.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 637 KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 637 ~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
.++.++++||.- .+++.....+.+.+++...+..+|+++.+..
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 368899999974 4677777778888877555556666666553
No 268
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.16 E-value=0.00068 Score=67.70 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=50.6
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCCCChHHHhhccEEEcCCC---CcccccHHHHHh--cC-CC-C
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP---VLFHDTILYNIN--YG-DK-S 584 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~---~LF~~Ti~eNi~--~~-~~-~ 584 (816)
.++|+|++||||||+++.|.+.+.+....|.+ +.... .++..++++.+. ++ .+ +
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~-------------------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 62 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT-------------------LAFPRYGQSVAADIAAEALHGEHGDLASS 62 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE-------------------EESSEEEEEEEEEEHHHHEEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-------------------EeecCCCCcchhhHHHHHHcccccccCCC
Confidence 68999999999999999999988654333321 11100 111334555442 11 01 1
Q ss_pred CCHHHHHHHHHHcCChhHHHhCCCCccccccCCCC
Q psy4347 585 KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGL 619 (816)
Q Consensus 585 ~~~~~i~~a~~~a~l~~~I~~LP~GydT~VGE~G~ 619 (816)
...+.+..++..+...+.|..++.+.++.|.++..
T Consensus 63 ~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 63 VYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYV 97 (214)
T ss_dssp HHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEEEE
T ss_pred HhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECCCc
Confidence 11233333343333366777777777888887653
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.11 E-value=0.0024 Score=61.07 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.9
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
..++|+|++||||||+++.|...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987653
No 270
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.09 E-value=0.0031 Score=63.56 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=23.1
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHh
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLY 531 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~ 531 (816)
+.++++.+ ...+|+|||||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455555 489999999999999999775
No 271
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.05 E-value=0.026 Score=59.42 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35669999999999999999888765
No 272
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.05 E-value=0.023 Score=63.59 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=27.4
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG 545 (816)
=++.+.+.|+|++||||||+++.|..-+ |-+.++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 4567899999999999999999998744 4444443
No 273
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.03 E-value=0.0023 Score=66.46 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=25.5
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+.++.+..++| +.|.||+|+||||+++.+.+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444555555 8899999999999999999743
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.02 E-value=0.0032 Score=61.32 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+|..++|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998755
No 275
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.02 E-value=0.025 Score=60.87 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.4
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
..++.-+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456789999999999999999999865
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.96 E-value=0.0038 Score=61.72 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=24.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+|..++|+|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
No 277
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.96 E-value=0.0035 Score=61.13 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 278
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.95 E-value=0.0042 Score=66.03 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=29.4
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG 545 (816)
.+|..+.|+|||||||||+++.|..-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987553 36777776
No 279
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.94 E-value=0.0074 Score=65.44 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=25.1
Q ss_pred EEeeCCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 505 l~i~~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
--+++|..+.|.||+|||||||+..++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999999998874
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.94 E-value=0.0042 Score=62.52 Aligned_cols=32 Identities=41% Similarity=0.534 Sum_probs=26.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG 545 (816)
.+-+++|+|++||||||+++.|.. + |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c----CCEEEEc
Confidence 356899999999999999999998 2 5555554
No 281
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.92 E-value=0.0036 Score=64.12 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=24.3
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999999998744
No 282
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.92 E-value=0.0034 Score=61.13 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=21.0
Q ss_pred cEEEEeCCCCCchhHHHHHHhcC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl 533 (816)
=+++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999875
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.90 E-value=0.0034 Score=61.34 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=24.1
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++|..+.|+|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.89 E-value=0.0037 Score=59.49 Aligned_cols=19 Identities=47% Similarity=0.702 Sum_probs=18.3
Q ss_pred EEEEeCCCCCchhHHHHHH
Q psy4347 512 SVAIVGGSGSGKSTIIRLL 530 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll 530 (816)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 285
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.86 E-value=0.0034 Score=67.80 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=36.0
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhc----CCCCCcceEEECC
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR----FFEPNAGAIYIDG 545 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g----l~~p~~G~I~idG 545 (816)
..+++..+.+ .|..++|+|+||+||||++..|.+ +...+...|...|
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 4678888888 799999999999999999998887 4444444444433
No 286
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.85 E-value=0.00037 Score=76.60 Aligned_cols=59 Identities=12% Similarity=-0.049 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHHhc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHhcC--CCEEEEEecC
Q psy4347 620 KLSGGEKQRVAIARAIL-KNTPILVFDE---AT------SSLDSITENNILSSLKTASR--NKTTICIAHR 678 (816)
Q Consensus 620 ~LSGGqrQRiaiARAll-~~p~iLiLDE---~T------s~LD~~te~~i~~~l~~~~~--~~T~i~IaHr 678 (816)
.+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.|+++.+ +.|+|+++|-
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 45777888999998875 5999999999 65 68999999999999977544 7899999986
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.72 E-value=0.0033 Score=61.24 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.8
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++..+.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998654
No 288
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.69 E-value=0.006 Score=60.39 Aligned_cols=28 Identities=39% Similarity=0.483 Sum_probs=25.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
+|..++|.|++||||||+++.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999987754
No 289
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.66 E-value=0.0048 Score=60.43 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=24.2
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+|..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
No 290
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.64 E-value=0.0076 Score=66.39 Aligned_cols=36 Identities=36% Similarity=0.542 Sum_probs=31.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHhc-----------CCCCCcceEEECC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYR-----------FFEPNAGAIYIDG 545 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~g-----------l~~p~~G~I~idG 545 (816)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46799999999999999999998 4578889888876
No 291
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.64 E-value=0.0061 Score=66.21 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+..+.|.||+|+||||+++.+....
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
No 292
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.62 E-value=0.025 Score=61.11 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
++.++++||+- .|+......+.+.+++...+..+|++|++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 57899999974 4678888888888876545566777787664
No 293
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.61 E-value=0.0054 Score=60.97 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=24.3
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++|..++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998754
No 294
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.59 E-value=0.012 Score=64.84 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=40.2
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChhHHHhc
Q psy4347 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL 685 (816)
Q Consensus 628 RiaiARAll~~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls~i~~~ 685 (816)
+.+|++||..+|+++++|||| |+++-. .+++....|.+++.++|..+....+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~ 250 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTI 250 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHH
Confidence 569999999999999999999 776643 3444455689999999987744333
No 295
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.58 E-value=0.027 Score=72.90 Aligned_cols=39 Identities=28% Similarity=0.465 Sum_probs=31.1
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceE-EECC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI-YIDG 545 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I-~idG 545 (816)
+++|+.+.|.||+|+|||||+..++.-.....|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999998877655444443 4444
No 296
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.55 E-value=0.018 Score=54.20 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=22.8
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+.+.-+.|.||+|+|||++++.+....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 345669999999999999999998754
No 297
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.55 E-value=0.0059 Score=60.74 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=24.5
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|..++|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998754
No 298
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.54 E-value=0.0064 Score=68.79 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=27.5
Q ss_pred cceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 499 vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
-|+.+.--+++|+.+.|.|++|+||||++--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555443589999999999999999999876664
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.44 E-value=0.0027 Score=62.44 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=24.9
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++++..++|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998765
No 300
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.0074 Score=58.77 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++..++|+|++||||||+.+.|..-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999997654
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.42 E-value=0.0072 Score=58.17 Aligned_cols=31 Identities=39% Similarity=0.467 Sum_probs=24.2
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcceEEEC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~id 544 (816)
..+.|+|++||||||+.+.|... .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999872 12445554
No 302
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.41 E-value=0.0062 Score=59.05 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=18.7
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+|..+.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357889999999999999999998654
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.40 E-value=0.0049 Score=60.68 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=27.6
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCc---ceEEECCE
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNA---GAIYIDGK 546 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~---G~I~idG~ 546 (816)
..++|+|+||||||||+..|.+.+.+.. |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999999998775432 55555543
No 304
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.38 E-value=0.014 Score=61.92 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+...+.|.||+|+|||+|++.++.-+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568888999999999999999866
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.36 E-value=0.0068 Score=58.75 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998755
No 306
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.32 E-value=0.0072 Score=62.88 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=21.4
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+.++|+||+|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998755
No 307
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.23 E-value=0.021 Score=61.79 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=26.2
Q ss_pred eeCCcEEEEeCCCCCchhHHH-HHHhcCCCC--CcceEEECC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTII-RLLYRFFEP--NAGAIYIDG 545 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~-~ll~gl~~p--~~G~I~idG 545 (816)
+++| .+-|.||+|||||||+ .++...... ..-.++||+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 7889 8999999999999994 444444332 223455555
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.21 E-value=0.0081 Score=58.39 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
.+.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988664
No 309
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.19 E-value=0.023 Score=54.13 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.3
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl 533 (816)
++.-+++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999863
No 310
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.18 E-value=0.016 Score=59.60 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=25.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecCh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrl 679 (816)
+|+++++||+-- |+.+.-..+ ..|.+ .+.++|++-|+.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 589999999964 665433222 33444 388999999953
No 311
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.14 E-value=0.017 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999998865
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.14 E-value=0.011 Score=59.64 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.6
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++|..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357889999999999999999998765
No 313
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.13 E-value=0.0099 Score=58.70 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999764
No 314
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.12 E-value=0.058 Score=57.08 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++..+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998754
No 315
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.08 E-value=0.034 Score=60.66 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=23.4
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++.-+.|.||+|+|||||++.++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455669999999999999999999865
No 316
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.08 E-value=0.03 Score=58.20 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.9
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl 533 (816)
++...+.|.||+|+||||+++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999885
No 317
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.08 E-value=0.078 Score=56.67 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.9
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
..+.|.||+|+||||+++.+.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987653
No 318
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.019 Score=54.03 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 319
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.03 E-value=0.011 Score=57.94 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=21.2
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998866
No 320
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.00 E-value=0.012 Score=56.53 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-+.++|.|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998744
No 321
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.00 E-value=0.012 Score=58.19 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+..++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998755
No 322
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.96 E-value=0.011 Score=58.41 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=21.5
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998865
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.94 E-value=0.011 Score=58.51 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
....++|.|++||||||+.+.|..-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998655
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.93 E-value=0.012 Score=58.90 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997644
No 325
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.91 E-value=0.011 Score=59.78 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.7
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++..+.|+|++||||||+++.|..-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998655
No 326
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.83 E-value=0.012 Score=56.38 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.3
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.83 E-value=0.011 Score=57.59 Aligned_cols=24 Identities=46% Similarity=0.528 Sum_probs=21.4
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 328
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.80 E-value=0.034 Score=59.26 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhcCCCEEEEEecChhH
Q psy4347 638 NTPILVFDEATSSLD-SITENNILSSLKTASRNKTTICIAHRLST 681 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD-~~te~~i~~~l~~~~~~~T~i~IaHrls~ 681 (816)
+++++++||+-. +. ......+.+.+++...+..+|+++.+...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999843 44 66666777777776556788888888763
No 329
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.80 E-value=0.027 Score=54.76 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.79 E-value=0.014 Score=55.68 Aligned_cols=23 Identities=39% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 331
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.77 E-value=0.011 Score=59.57 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998765
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.77 E-value=0.014 Score=56.83 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.76 E-value=0.013 Score=56.84 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.75 E-value=0.012 Score=58.81 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997654
No 335
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.70 E-value=0.0099 Score=63.32 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=19.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++-+++|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 336
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.70 E-value=0.021 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 337
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.68 E-value=0.07 Score=58.73 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=23.6
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++..+.|.||+|+||||+++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998763
No 338
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.68 E-value=0.031 Score=53.85 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
+.=+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999999986
No 339
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.68 E-value=0.014 Score=64.39 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|||++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999986
No 340
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.026 Score=56.10 Aligned_cols=21 Identities=24% Similarity=0.694 Sum_probs=19.1
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 599999999999999997765
No 341
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.61 E-value=0.016 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 342
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.60 E-value=0.017 Score=59.53 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
++-.++|.|++||||||+.+.|..-|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998655
No 343
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.59 E-value=0.016 Score=57.94 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.6
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-.++|+|++||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999998753
No 344
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.58 E-value=0.091 Score=68.96 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=29.6
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCCCCC-cceEEECC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDG 545 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-~G~I~idG 545 (816)
+++|+.+.|.||+|+|||||+.-++.-.... ...++|++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 8999999999999999999987776544333 23455555
No 345
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.55 E-value=0.087 Score=59.32 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.2
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+..-+.|.||+|+|||||++.+.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999999999999865
No 346
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.52 E-value=0.018 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998643
No 347
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.52 E-value=0.023 Score=54.97 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
No 348
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.51 E-value=0.015 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.2
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++++|++|+|||||++.+.+-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998744
No 349
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.017 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.6
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
=+++++|++|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 350
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.50 E-value=0.017 Score=59.69 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.4
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998744
No 351
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.49 E-value=0.018 Score=53.81 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998875
No 352
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.47 E-value=0.016 Score=60.66 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
+++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998753
No 353
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.44 E-value=0.026 Score=52.96 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999886
No 354
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.42 E-value=0.047 Score=57.44 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
++.++++||+- .++......+.+.+++...+..+|+++.+..
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 48899999974 3566666677777777555566777777754
No 355
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.41 E-value=0.02 Score=54.02 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 356
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.39 E-value=0.019 Score=53.67 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999985
No 357
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.39 E-value=0.02 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998643
No 358
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.39 E-value=0.021 Score=59.52 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=23.1
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998753
No 359
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.38 E-value=0.039 Score=59.15 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=23.3
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+..-+.|.||+|+||||+++.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 456679999999999999999998753
No 360
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.38 E-value=0.019 Score=59.94 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999863
No 361
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.37 E-value=0.017 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 362
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.35 E-value=0.003 Score=76.69 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=38.7
Q ss_pred eeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCCC
Q psy4347 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550 (816)
Q Consensus 502 ~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~~ 550 (816)
..++.+++|+.+.|+||+|||||||++.|++... .+-+.+++.++..
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 3467789999999999999999999999999885 4566777766544
No 363
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.091 Score=59.20 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=25.1
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-+++-.-+-+.||+|||||+|++.+++-.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 35666779999999999999999999854
No 364
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.29 E-value=0.035 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 365
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.29 E-value=0.021 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999988763
No 366
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.29 E-value=0.021 Score=53.59 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 367
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.28 E-value=0.021 Score=53.80 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 368
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.25 E-value=0.021 Score=55.20 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
+++|+|++|+|||||++.+.+-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999986643
No 369
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.24 E-value=0.022 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988753
No 370
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.22 E-value=0.022 Score=54.19 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 371
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.21 E-value=0.022 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 372
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.20 E-value=0.026 Score=54.62 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 373
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.20 E-value=0.02 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 374
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.16 E-value=0.027 Score=61.38 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.6
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998663
No 375
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.14 E-value=0.065 Score=61.30 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.2
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++...+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4666779999999999999999998754
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.11 E-value=0.022 Score=60.23 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.0
Q ss_pred CcEEEEeCCCCCchhHHHHHHhc
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
...++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 377
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.06 E-value=0.021 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.8
Q ss_pred cEEEEeCCCCCchhHHHHHHhcC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl 533 (816)
-.++++|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 378
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.05 E-value=0.021 Score=55.09 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 69999999999999999998753
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.05 E-value=0.022 Score=57.35 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=23.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+|-.+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998765
No 380
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.97 E-value=0.026 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 381
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.97 E-value=0.026 Score=54.28 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 382
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.96 E-value=0.022 Score=59.65 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++|||++|+|||||++.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999998764
No 383
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.95 E-value=0.031 Score=61.39 Aligned_cols=31 Identities=35% Similarity=0.562 Sum_probs=25.5
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHh
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY 531 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~ 531 (816)
+++..+++.+ ..++|+|+||||||||+..|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3566677666 589999999999999999876
No 384
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.93 E-value=0.027 Score=59.41 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.3
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++|+|++|||||||++.+.|-.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 385
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.09 Score=59.20 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=25.1
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-+++..-+-+.||+|||||+|++.+++-.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 46667779999999999999999999854
No 386
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.89 E-value=0.022 Score=57.01 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998865
No 387
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.86 E-value=0.031 Score=53.21 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998863
No 388
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.84 E-value=0.07 Score=65.08 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=27.3
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcc-eEEECC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAG-AIYIDG 545 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G-~I~idG 545 (816)
..+.|+||+|+|||++++.|........+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999988754333 345554
No 389
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.82 E-value=0.029 Score=52.60 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 390
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.82 E-value=0.025 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999874
No 391
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.81 E-value=0.093 Score=55.97 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.2
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
+.+..+.|.||+|+|||++++.|.....
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 4567799999999999999999988654
No 392
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.79 E-value=0.029 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCchhHHHHHHhc
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~g 532 (816)
=+++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999965
No 393
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.78 E-value=0.14 Score=66.28 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=27.8
Q ss_pred ccceeeeEE---eeCCcEEEEeCCCCCchhHHHHHHhcC
Q psy4347 498 RIFSNLNFT---IPAGKSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 498 ~vL~~isl~---i~~Ge~vaivG~sGsGKSTl~~ll~gl 533 (816)
+-|+.+ +. +++|+.+-|.||+|+|||||+--++.-
T Consensus 369 ~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 446554 33 899999999999999999998766543
No 394
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.78 E-value=0.097 Score=68.72 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=32.3
Q ss_pred ccccceeee--EEeeCCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 496 TKRIFSNLN--FTIPAGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 496 ~~~vL~~is--l~i~~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
+.+.|+++. .-+++|+.+.+.||+|||||||+..+.-
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456788887 5799999999999999999999998773
No 395
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.78 E-value=0.039 Score=53.58 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.2
Q ss_pred cEEEEeCCCCCchhHHHHHHhc
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~g 532 (816)
-+++|+|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999987
No 396
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.76 E-value=0.045 Score=52.36 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.9
Q ss_pred EEEEeCCCCCchhHHHHHHh
Q psy4347 512 SVAIVGGSGSGKSTIIRLLY 531 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~ 531 (816)
+++|+|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999988
No 397
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.03 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999998763
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.72 E-value=0.028 Score=56.39 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998755
No 399
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.70 E-value=0.028 Score=53.36 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
.++++|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.68 E-value=0.032 Score=56.56 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.67 E-value=0.036 Score=56.45 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+..+.|+|++||||||+.+.|..-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 402
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.67 E-value=0.032 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 403
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.65 E-value=0.033 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 404
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.63 E-value=0.016 Score=57.43 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=23.2
Q ss_pred eeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcC
Q psy4347 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 501 ~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++.|.-..--+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 333333333347999999999999999999873
No 405
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.63 E-value=0.036 Score=52.94 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=23.7
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
..+..+.|+||+|+||||+++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3457799999999999999999887653
No 406
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.62 E-value=0.046 Score=53.07 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.8
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
.++|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 699999999999999999986
No 407
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.62 E-value=0.033 Score=53.26 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 599999999999999999985
No 408
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.59 E-value=0.051 Score=54.99 Aligned_cols=36 Identities=33% Similarity=0.302 Sum_probs=28.5
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
..++..-+.+ .|..+.|+||||||||||+.-|..-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566665554 58899999999999999998887643
No 409
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.58 E-value=0.041 Score=53.64 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++|+|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999999875
No 410
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.58 E-value=0.033 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 411
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.088 Score=59.17 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=24.6
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-+++..-+-+.||+|||||+|++.+++-.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35566669999999999999999999854
No 412
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.52 E-value=0.017 Score=65.56 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=34.0
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCCCCCcceEE
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY 542 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~ 542 (816)
.+++.+ +.+-+|++++|+|+||+|||||++.|.+-.....|.|.
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 355555 67789999999999999999999999876554444433
No 413
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.47 E-value=0.035 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=22.4
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
.+|..++|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987764
No 414
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.42 E-value=0.024 Score=54.37 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHhc
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
.=+++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998874
No 415
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.42 E-value=0.05 Score=54.18 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 416
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.41 E-value=0.23 Score=53.48 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
+++|+|+||+= .|.......+.+.|++-..+...|++|++.+
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 57899999984 3555666667777765444456777888865
No 417
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.069 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+|+|||++|+|||||++.+.+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998643
No 418
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.40 E-value=0.037 Score=54.20 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 419
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.38 E-value=0.037 Score=54.06 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 420
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.38 E-value=0.034 Score=57.31 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.8
Q ss_pred cEEEEeCCCCCchhHHHHHHhcC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl 533 (816)
-.|+|+|++|+|||||++.|++-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999873
No 421
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.35 E-value=0.042 Score=55.80 Aligned_cols=29 Identities=31% Similarity=0.319 Sum_probs=25.4
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
.+|..++|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999887754
No 422
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.35 E-value=0.038 Score=52.97 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=19.3
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999885
No 423
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.34 E-value=0.034 Score=60.66 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.4
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
..++|+||||||||||.+.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999988664
No 424
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.34 E-value=0.038 Score=53.56 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.32 E-value=0.06 Score=52.35 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 426
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.31 E-value=0.035 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 427
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.29 E-value=0.052 Score=52.73 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++|+|++|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 428
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.29 E-value=0.038 Score=54.84 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++++|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 429
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.27 E-value=0.04 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999863
No 430
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.27 E-value=0.039 Score=58.95 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999974
No 431
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.27 E-value=0.042 Score=56.06 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=26.5
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
++|..+++-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46999999999999999999999988865
No 432
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.24 E-value=0.038 Score=56.44 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=25.4
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
..++..++.|+||+||||+|..+.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34667889999999999999999999766
No 433
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.14 Score=56.97 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=23.3
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++-.-+-+.||+|||||+|++.+++-.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4444558999999999999999999854
No 434
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.23 E-value=0.041 Score=52.60 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998874
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.22 E-value=0.047 Score=58.96 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+..++|+||||||||||..-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4679999999999999999998765
No 436
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.19 E-value=0.044 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 437
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.17 E-value=0.043 Score=53.20 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=19.4
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999875
No 438
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.16 E-value=0.13 Score=61.70 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+.|+||+|+|||++++.|....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.13 E-value=0.043 Score=57.81 Aligned_cols=31 Identities=35% Similarity=0.393 Sum_probs=24.1
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcceEEEC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~id 544 (816)
..+.|+|++||||||+.+.|..-+ .|-..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEec
Confidence 468999999999999999998732 2444453
No 440
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.11 E-value=0.024 Score=56.52 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.1
Q ss_pred cEEEEeCCCCCchhHHHHHHhcC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl 533 (816)
-+++|+|++|+|||||++.|++-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 47999999999999999999875
No 441
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.10 E-value=0.043 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|||++|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 442
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.07 E-value=0.044 Score=58.64 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=20.9
Q ss_pred cEEEEeCCCCCchhHHHHHHhcC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl 533 (816)
-+|||+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36999999999999999999874
No 443
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.05 E-value=0.045 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=20.3
Q ss_pred cEEEEeCCCCCchhHHHHHHhc
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~g 532 (816)
-+++|+|++|+|||||++.+.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999987
No 444
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.05 E-value=0.033 Score=57.82 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=24.8
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
++|..++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5778999999999999999999998773
No 445
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.03 E-value=0.092 Score=55.25 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEecChh
Q psy4347 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680 (816)
Q Consensus 638 ~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~IaHrls 680 (816)
++.++++||+- .+++.....+.+.+++...+..+|+++.+.+
T Consensus 110 ~~~vliiDe~~-~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 110 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCeEEEEeCCC-cCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 68899999974 4677777778888877544555666666553
No 446
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.03 E-value=0.045 Score=53.44 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
.++|+|++|+|||||++.+.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 447
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.95 E-value=0.047 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 448
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.93 E-value=0.042 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.7
Q ss_pred cEEEEeCCCCCchhHHHHHHhcC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl 533 (816)
=+++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 36999999999999999999874
No 449
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.92 E-value=0.048 Score=55.73 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=24.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
+|..++|.|+.||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998764
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.91 E-value=0.048 Score=56.37 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
+|..++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999887653
No 451
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.043 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999998863
No 452
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.86 E-value=0.055 Score=55.48 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=25.0
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
.+|..++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987664
No 453
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.86 E-value=0.11 Score=59.76 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
..+++|||++||||||++.-|+..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999996654
No 454
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.85 E-value=0.047 Score=53.51 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=21.7
Q ss_pred EEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
+++++|++|+|||||++.+.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5999999999999999998875443
No 455
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.85 E-value=0.057 Score=51.51 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCchhHHHHHHhc
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~g 532 (816)
=+++++|++|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999875
No 456
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.85 E-value=0.05 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999763
No 457
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.83 E-value=0.05 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCchhHHHHHHhc
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~g 532 (816)
=.|+|+|++|+|||||++.+.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999885
No 458
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.82 E-value=0.21 Score=56.15 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=28.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCCCC-cceEEECCEeC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDGKNI 548 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~p~-~G~I~idG~di 548 (816)
+..+++++|++|+||||++--|+..+.-. .=.|.+=..|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 45789999999999999998888766544 22454433343
No 459
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.81 E-value=0.052 Score=56.56 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++++|++|||||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 59999999999999999998743
No 460
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.80 E-value=0.052 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCchhHHHHHHhcC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl 533 (816)
=+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999998863
No 461
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.79 E-value=0.046 Score=54.51 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.0
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-.++|+|++|+|||||++-|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 469999999999999999888754
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.78 E-value=0.053 Score=55.11 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
+|..++|.|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988775
No 463
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.78 E-value=0.047 Score=57.33 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
+++++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 464
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.75 E-value=0.05 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHhc
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999985
No 465
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.74 E-value=0.049 Score=53.59 Aligned_cols=21 Identities=24% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 599999999999999999875
No 466
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.73 E-value=0.041 Score=53.40 Aligned_cols=24 Identities=38% Similarity=0.299 Sum_probs=21.0
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
=+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998753
No 467
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.72 E-value=0.053 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl 533 (816)
.=+++|+|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999763
No 468
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.69 E-value=0.045 Score=52.25 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=24.3
Q ss_pred eCCcEEEEeCCCCCchhHHHHHHhcCCCC
Q psy4347 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536 (816)
Q Consensus 508 ~~Ge~vaivG~sGsGKSTl~~ll~gl~~p 536 (816)
..+..+.|+||+|+||||+++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999886643
No 469
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.67 E-value=0.27 Score=56.04 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.0
Q ss_pred ceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 500 L~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
|+.+.--+++|+.+.|.|++|+|||||+--++.-.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 44433258999999999999999999976665433
No 470
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.63 E-value=0.059 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 471
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.62 E-value=0.043 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++-+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998876
No 472
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.60 E-value=0.052 Score=58.78 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.4
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFE 535 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~ 535 (816)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998663
No 473
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.59 E-value=0.047 Score=52.63 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++.+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 474
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.58 E-value=0.06 Score=52.58 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCchhHHHHHHhc
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~g 532 (816)
=+++++|++|+|||||++.+.+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999875
No 475
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.49 E-value=0.042 Score=52.70 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=9.4
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++|+|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999998864
No 476
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.48 E-value=0.064 Score=56.28 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999998764
No 477
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.47 E-value=0.061 Score=52.33 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.0
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++-+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 599999999999999988764
No 478
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.44 E-value=0.057 Score=53.80 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=19.7
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 599999999999999999986
No 479
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.43 E-value=0.061 Score=56.33 Aligned_cols=30 Identities=43% Similarity=0.447 Sum_probs=23.0
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcce
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G~ 540 (816)
.++++||.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876555454
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.39 E-value=0.2 Score=57.14 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=47.9
Q ss_pred ccccCCCCCCChhHHHHHHHHH--Hhcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy4347 612 TQVGERGLKLSGGEKQRVAIAR--AILK---------------NTPILVFDEATSSLDSITENNILSSLKTASRNKTTIC 674 (816)
Q Consensus 612 T~VGE~G~~LSGGqrQRiaiAR--All~---------------~p~iLiLDE~Ts~LD~~te~~i~~~l~~~~~~~T~i~ 674 (816)
+........+||||+|-.-+|. |++. .=.+++|||| +-+|.+..+..++.++++ |-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 4445556789999999543333 2221 1157999999 999999999999999987 777888
Q ss_pred EecC
Q psy4347 675 IAHR 678 (816)
Q Consensus 675 IaHr 678 (816)
+|=.
T Consensus 448 atP~ 451 (483)
T 3euj_A 448 AAPE 451 (483)
T ss_dssp EESS
T ss_pred ECcc
Confidence 8876
No 481
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.39 E-value=0.055 Score=57.25 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|||++|+|||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999864
No 482
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.37 E-value=0.024 Score=63.84 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=31.6
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCCCCCcceEEECCEeCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN 549 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~~p~~G~I~idG~di~ 549 (816)
..++|+|++|+||||++.-|++.+......|.+-..|..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 589999999999999999999988765556766555543
No 483
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.36 E-value=0.081 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCchhHHHHHHhcC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl 533 (816)
-+++++|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998864
No 484
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.32 E-value=0.059 Score=55.98 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++++|++|+|||||++.|++-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999973
No 485
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.32 E-value=0.058 Score=56.24 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.|++-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 486
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.27 E-value=0.086 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.3
Q ss_pred cEEEEeCCCCCchhHHHHHHhcC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl 533 (816)
=+++|+|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999988763
No 487
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.19 E-value=0.075 Score=57.26 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 510 GKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 510 Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
...+.|+||||||||||..-|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999998765
No 488
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.19 E-value=0.06 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999863
No 489
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.13 E-value=0.061 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 509 AGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 509 ~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
+.=+++++|++|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999999864
No 490
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.12 E-value=0.088 Score=53.16 Aligned_cols=24 Identities=38% Similarity=0.811 Sum_probs=21.9
Q ss_pred eeCCcEEEEeCCCCCchhHHHHHH
Q psy4347 507 IPAGKSVAIVGGSGSGKSTIIRLL 530 (816)
Q Consensus 507 i~~Ge~vaivG~sGsGKSTl~~ll 530 (816)
+++|+.+.|.|++|+||||++--+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 799999999999999999997544
No 491
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.01 E-value=0.1 Score=51.55 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.5
Q ss_pred cEEEEeCCCCCchhHHHHHHhc
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~g 532 (816)
=+++++|++|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999988774
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.99 E-value=0.067 Score=51.93 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 493
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.29 Score=54.89 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=24.7
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-+++..-+-+.||+|||||+|++.+++-.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 35566679999999999999999999854
No 494
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.97 E-value=0.063 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.2
Q ss_pred EEEEeCCCCCchhHHHHHHhcCC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
.++|||.+|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999854
No 495
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.90 E-value=0.036 Score=61.43 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=38.3
Q ss_pred EEEEeeEEEeCCCcccccce-----------eeeEEeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 482 IEFRDVNFSYIDKHTKRIFS-----------NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 482 I~~~~vsf~Y~~~~~~~vL~-----------~isl~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
..|++++--||. ++.-++ |.=+.|-+|++.+|+|++|+|||||+..|.+..
T Consensus 138 ~~fe~l~Pi~P~--~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 138 VNFDNLTPDYPR--ERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCGGGSCEECCC--SBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccCCCCCch--hhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 445555555554 333455 666789999999999999999999999888854
No 496
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.89 E-value=0.067 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.7
Q ss_pred cEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 511 KSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 511 e~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-+++|+|.+|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 469999999999999998887653
No 497
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.85 E-value=0.24 Score=56.06 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.1
Q ss_pred EeeCCcEEEEeCCCCCchhHHHHHHhcCC
Q psy4347 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534 (816)
Q Consensus 506 ~i~~Ge~vaivG~sGsGKSTl~~ll~gl~ 534 (816)
-+++-.-+-+.||+|||||+|++.+++-.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 46677779999999999999999999744
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.82 E-value=0.1 Score=51.57 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=26.1
Q ss_pred ccceeeeEEeeCCcEEEEeCCCCCchhHHHHHHhc
Q psy4347 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 498 ~vL~~isl~i~~Ge~vaivG~sGsGKSTl~~ll~g 532 (816)
..++..-+. -.|.-+.|.|+||+||||++..|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345554444 3488999999999999999987765
No 499
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.77 E-value=0.04 Score=54.68 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEeCCCCCchhHHHHHHhc
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYR 532 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~g 532 (816)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998874
No 500
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.58 E-value=0.044 Score=53.48 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=4.5
Q ss_pred EEEEeCCCCCchhHHHHHHhcC
Q psy4347 512 SVAIVGGSGSGKSTIIRLLYRF 533 (816)
Q Consensus 512 ~vaivG~sGsGKSTl~~ll~gl 533 (816)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999988753
Done!