RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4347
(816 letters)
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 560 bits (1446), Expect = 0.0
Identities = 244/485 (50%), Positives = 328/485 (67%), Gaps = 24/485 (4%)
Query: 198 LRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMV 257
LR+ +F+ V Q ++R +A F HLH+L L FHL R+TG LS+ I+RG++GI +L ++
Sbjct: 1 LRDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWIL 60
Query: 258 FNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENE 317
FNI+PT+ E++L++ IL G F+L + V +Y +T+ ++ WRT FR MN A+++
Sbjct: 61 FNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSD 120
Query: 318 AGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAA 377
A KAIDSL+N+ETVKYF NE++EA RY+ L+ YE+AA+K SL LNFG
Sbjct: 121 ANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFG-------- 172
Query: 378 LKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFL 437
Q+AIFST + + M +A + G LTVGDLV VN LLFQLS+PL FL
Sbjct: 173 -------------QTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFL 219
Query: 438 GSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTK 497
G YRE+RQA DM+ MF L+ E + + +A PL A + F +V+F+Y + +
Sbjct: 220 GFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGA-VAFINVSFAYDPR--R 276
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557
I + ++FTIP GK+VAIVG SG+GKSTI+RLL+RF++ N+G+I IDG++I DV SLR
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 558 RHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
R I IVPQD VLF+DTI YNI YG + EE AA+ A +H+ I P Y+T VGER
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGER 396
Query: 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
GLKLSGGEKQRVAIAR ILKN PIL+ DEATS+LD+ TE I ++L+ S +TT+ IAH
Sbjct: 397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH 456
Query: 678 RLSTI 682
RLSTI
Sbjct: 457 RLSTI 461
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 357 bits (917), Expect = e-113
Identities = 163/529 (30%), Positives = 271/529 (51%), Gaps = 28/529 (5%)
Query: 156 TGIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIA 215
++ + + +A A + ++L + + L++ + + + Q+ + +
Sbjct: 29 LSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88
Query: 216 KNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILS 275
+++F L L L+F ++G L + ++ ++S ++ + +I L + S +L
Sbjct: 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSIL-LLIGSLVLL 147
Query: 276 YKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYF 335
+ +L+ + + + + + + + +A E + ++SL +K F
Sbjct: 148 FSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAF 207
Query: 336 NNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIF 395
E E R+E ++ +A L+ S A L +
Sbjct: 208 GAEDRELKRFEEANEELRRANLRASRLEALLAPL---------------------MLLLS 246
Query: 396 STAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMF 455
S L + + G+LTVG L L +L P+ LG V +++A + +F
Sbjct: 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLF 306
Query: 456 TLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAI 515
L+ +EP +++ + L + SIEF +V+FSY K + +++F+I G+ VAI
Sbjct: 307 ELLDEEPEVEDPPDPLK----DTIGSIEFENVSFSYPGKKP--VLKDISFSIEPGEKVAI 360
Query: 516 VGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575
VG SGSGKST+I+LL R ++P +G I IDG +I D+ LDSLR+ I IV QDP+LF TI
Sbjct: 361 VGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420
Query: 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635
NI G + EE EA KLA+ H I P+ Y+T VGERG+ LSGG++QR+AIARA+
Sbjct: 421 ENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL 480
Query: 636 LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
L+N PIL+ DEATS+LD+ TE I +LK + +TT+ IAHRLSTIK+
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN 529
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 331 bits (852), Expect = e-108
Identities = 124/203 (61%), Positives = 160/203 (78%), Gaps = 2/203 (0%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IEF +V F+Y + + +++FTIPAGK VAIVG SGSGKSTI+RLL+RF++ ++G+I
Sbjct: 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
IDG++I +V LDSLRR I +VPQD VLF+DTI YNI YG + EE IEAAK A +H+
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
I+++P+ Y+T VGERGLKLSGGEKQRVAIARAILKN PIL+ DEATS+LD+ TE I +
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
+L+ S+ +TTI IAHRLSTI +
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVN 201
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 307 bits (788), Expect = 3e-93
Identities = 157/516 (30%), Positives = 253/516 (49%), Gaps = 32/516 (6%)
Query: 172 DALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHL 231
DA ++ T + +G +A + + LR + A + +R +++ F HL L L++
Sbjct: 187 DASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246
Query: 232 NRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVG 291
R G + + + F+ +++ I+ +F L ++ + Y + +L+ ++ +
Sbjct: 247 KRSVGEIISRVRELEQIREFLTGSILTLIIDLLFALIFLAVMFLY--SWKLTLIVLAAIP 304
Query: 292 IYTAYTLSITQWRTQFRVNMNKAENEAGNKA---IDSLINYETVKYFNNEKFEADRYEGV 348
+ TL I Q R K E+ + ++++ ETVK E +++
Sbjct: 305 LNVLITL-IFQPL--LRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNR 361
Query: 349 LKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAR 408
L K KT LN + L + S + + F A
Sbjct: 362 LAKQVNIGFKTEKLALILNT-----------IKSLL-------QQLSSVLI---LWFGAI 400
Query: 409 EIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKA 468
+ G LT+G LV N L P+ L ++ + +QA + ++ + ++ P + +
Sbjct: 401 LVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP--EQEG 458
Query: 469 NALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIR 528
+ + L IEF +V+F Y + +L+ IP G+ VAIVG SGSGKST+++
Sbjct: 459 DKTLIHLPKLQGEIEFENVSFRY-GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLK 517
Query: 529 LLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYE 588
LL ++P G I +DG ++ND+DL SLRR + V QDP LF +I NI G+ + E
Sbjct: 518 LLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE 577
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
E IEAA+LA H I P Y+T VGE G LSGG++QR+A+ARA+L IL+ DEAT
Sbjct: 578 EIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637
Query: 649 SSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
S+LD TE IL +L + +T I IAHRLSTI+
Sbjct: 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 289 bits (743), Expect = 2e-92
Identities = 104/203 (51%), Positives = 144/203 (70%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IEF++V+F Y + I L+ TIP GK+VA+VG SG GKST++ LL RF++P +G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
+DG +I D++L LR I +V Q+PVLF TI NI YG + EE EAAK A++H+
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
I+ P+ Y+T VGERG +LSGG+KQR+AIARA+L+N IL+ DEATS+LD+ +E +
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
+L A + +TTI IAHRLSTI++
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRN 203
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 273 bits (701), Expect = 2e-86
Identities = 98/203 (48%), Positives = 145/203 (71%), Gaps = 1/203 (0%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+EF++V F Y + +++ IPAG++VA+VG SGSGKST++ L+ RF++ ++G I
Sbjct: 1 VEFKNVTFRY-PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
IDG ++ D L SLRR I +V QD LF+DT+ NI YG + EE EAA+ A+ H
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
I++ P Y+T +GERG+KLSGG++QR+AIARA+LK+ PIL+ DEATS+LD+ +E + +
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
+L+ +N+TT IAHRLSTI++
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIEN 202
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 273 bits (700), Expect = 6e-82
Identities = 174/553 (31%), Positives = 275/553 (49%), Gaps = 82/553 (14%)
Query: 174 LIASATSIILGYGIARICSSGFN----ELRNAVFA---------------------SVAQ 208
LI +A ++ L Y + + GF+ L N FA + +
Sbjct: 28 LITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87
Query: 209 RSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAM-------VFNIV 261
R + I + VF HL +L +F ++G +++ R + + S + + N +
Sbjct: 88 RVVADIRRAVFAHLISLSPSFFDKNRSG---EVVSRLTTDTTLLQSVIGSSLSMALRNAL 144
Query: 262 PTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQW-RTQFRVNMNKAENEAGN 320
I L ++ I S K S LLAV V L + R R + ++ +AG+
Sbjct: 145 MCIGGLIMMF-ITSPKLTS-LVLLAVPLV---LLPILLFGRRVRKLSRESQDRIA-DAGS 198
Query: 321 KAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKT 380
A ++L TV+ F +E E R+ G ++K +AA + + A L
Sbjct: 199 YAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL-------------- 244
Query: 381 STSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDL-------VMVNGLLFQLSMP 433
+ + L FG A+ + A ++ G ++ G L VMV G
Sbjct: 245 TAIVIVLVFG-------AIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAG-------S 290
Query: 434 LGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKAN--ALPLVLTTSNASIEFRDVNFSY 491
+G L V+ E+++A + + L+ EP IK A+ LP+ L IEF VNF+Y
Sbjct: 291 IGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLR---GEIEFEQVNFAY 347
Query: 492 IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV 551
+ + LN T+ G++VA+VG SG+GKST+ +LL RF++P +G I +DG ++ +
Sbjct: 348 PARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407
Query: 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
D LR +A+VPQDPVLF +++ NI YG + EE AA+ A H I P Y+
Sbjct: 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYD 467
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKT 671
T +GERG+ LSGG++QR+AIARAILK+ PIL+ DEATS+LD+ +E + +L+T + +T
Sbjct: 468 TYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRT 527
Query: 672 TICIAHRLSTIKH 684
T+ IAHRL+T+
Sbjct: 528 TLIIAHRLATVLK 540
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 257 bits (659), Expect = 2e-80
Identities = 101/203 (49%), Positives = 139/203 (68%), Gaps = 2/203 (0%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IEF +VNFSY K + ++NF+I G++VAIVG +G+GK+T+I LL RF++P G I
Sbjct: 3 IEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
IDG +I D+ SLR I +V QD LF TI+ NI G + + EE IEAAK A H+
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
I+K PN Y+T +GE G LS GE+Q +AIARA+L++ IL+ DEATS++D+ TE I
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
+L+ + +T+I IAHRLSTIK+
Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKN 203
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 257 bits (658), Expect = 9e-76
Identities = 148/496 (29%), Positives = 235/496 (47%), Gaps = 82/496 (16%)
Query: 217 NVFLHLHNLDLAFHLNRQTGALSKIIDRGSRG-----INFV---LSAMV--FNIVPTIFE 266
F + L LA+H R +G + RG+ + F+ L+ +V ++P
Sbjct: 94 EYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF 153
Query: 267 LALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNK-----AENEAGN- 320
+ S++ L V + +YT T + M K A E
Sbjct: 154 MNWRLSLV----------LVVLGI-VYTLIT----------TLVMRKTKDGQAAVEEHYH 192
Query: 321 ----KAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTST--SLATLNFGKAQYE 374
D++ N V+ +N + E + A + + +LA+
Sbjct: 193 DLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALAS--------- 243
Query: 375 QAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNG---LLFQ-L 430
+ ++++ L AI L + G L VG++V G LL L
Sbjct: 244 -VLNRAASTITML-----AILVLGAAL--------VQKGQLRVGEVVAFVGFATLLIGRL 289
Query: 431 SMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNAS--IEFRDVN 488
+ F+ V+ + ++ F + P +++ A+ L +EF DV+
Sbjct: 290 DQVVAFINQVFMAAPK----LEEFFEVEDAVPDVRDPPGAIDL----GRVKGAVEFDDVS 341
Query: 489 FSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548
FSY + ++ +++F G++VAIVG +G+GKST+I LL R F+P +G I IDG +I
Sbjct: 342 FSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI 399
Query: 549 NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPN 608
V SLRR+IA+V QD LF+ +I NI G + EE AA+ A H+ I + P+
Sbjct: 400 RTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPD 459
Query: 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR 668
Y+T VGERG +LSGGE+QR+AIARA+LK+ PIL+ DEATS+LD TE + ++L +
Sbjct: 460 GYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK 519
Query: 669 NKTTICIAHRLSTIKH 684
+TT IAHRLST+++
Sbjct: 520 GRTTFIIAHRLSTVRN 535
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 239 bits (613), Expect = 2e-74
Identities = 89/203 (43%), Positives = 123/203 (60%), Gaps = 43/203 (21%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IEF++V+FSY + K + +++ TI G+ VAIVG SGSGKST+++LL R ++P +G I
Sbjct: 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
IDG ++ D+DL+SLR++IA VPQDP LF TI NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
LSGG++QR+AIARA+L++ PIL+ DEATS+LD TE IL
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
+L+ ++ KT I IAHRLSTI+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRD 160
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 248 bits (636), Expect = 8e-73
Identities = 147/508 (28%), Positives = 248/508 (48%), Gaps = 41/508 (8%)
Query: 181 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGA-LS 239
+ + GI S+ + V+ + +R I +F L L ++F + TG LS
Sbjct: 63 LAVLRGICSFVSTYL-------LSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLS 115
Query: 240 KIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCV--GIYTAYT 297
+I + + A + + T+ + L +L Y ++ + V + +
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVS 175
Query: 298 LSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAAL 357
+ R + + + + A ++L Y VK F + +E R++ V + + A+
Sbjct: 176 ---KRLRRISK-EIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAM 231
Query: 358 KTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTV 417
K +++ S S I S A+ + + A + G+LT
Sbjct: 232 KMTSA-----------------GSISSPITQL----IASLALAVVLFIALFQAQAGSLTA 270
Query: 418 GDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTT 477
GD + L PL L +V +++ +++FTL+ P A+
Sbjct: 271 GDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERA--- 327
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
+EFR+V F Y + +++ I G++VA+VG SGSGKST++ L+ RF+EP+
Sbjct: 328 -RGDVEFRNVTFRYPGRDRP-ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD 385
Query: 538 AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIE-AAKL 596
+G I +DG ++ D L SLRR +A+V QD VLF+DTI NI YG ++ IE A
Sbjct: 386 SGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAA 445
Query: 597 ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITE 656
A + + K P +T +GE G+ LSGG++QR+AIARA+LK+ PIL+ DEATS+LD+ +E
Sbjct: 446 AYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505
Query: 657 NNILSSLKTASRNKTTICIAHRLSTIKH 684
+ ++L+ + +TT+ IAHRLSTI+
Sbjct: 506 RLVQAALERLMQGRTTLVIAHRLSTIEK 533
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 244 bits (625), Expect = 3e-70
Identities = 142/489 (29%), Positives = 240/489 (49%), Gaps = 31/489 (6%)
Query: 198 LRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMV 257
LR +FA + R ++ ++ HL L L + +R+ G + + NF+ + +
Sbjct: 198 LRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARVRELEQIRNFLTGSAL 257
Query: 258 FNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENE 317
++ +F + ++ + Y + + + + Y ++ + + RV +K E
Sbjct: 258 TVVLDLLFVVVFLAVMFFY--SPTLTGVVIGSLVCYALLSVFVGP-ILRKRVE-DKFERS 313
Query: 318 AGNKA--IDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQ 375
A + ++S+ ET+K E +R++ L Y A+ + T+L + A
Sbjct: 314 AAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFR-VTNLGNI----AGQAI 368
Query: 376 AALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLG 435
++ T L FG + G L+ G LV N L +++ P+
Sbjct: 369 ELIQKLTFAILLWFGAHLVIG----------------GALSPGQLVAFNMLAGRVTQPVL 412
Query: 436 FLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKH 495
L ++++ +Q I ++ + + L PT A L +I F ++ F Y
Sbjct: 413 RLAQLWQDFQQTGIALERLGDI-LNSPTEPRSAGLA--ALPELRGAITFENIRFRY-APD 468
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS 555
+ + SNLN I G+ + IVG SGSGKST+ +LL R + P G + +DG ++ D
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528
Query: 556 LRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG 615
LRR + +V Q+ VLF +I NI + +E I AAKLA H+ I + P Y T+VG
Sbjct: 529 LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588
Query: 616 ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICI 675
E+G LSGG++QR+AIARA++ N IL+FDEATS+LD +E I+ +++ R +T I I
Sbjct: 589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648
Query: 676 AHRLSTIKH 684
AHRLST++
Sbjct: 649 AHRLSTVRA 657
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 238 bits (609), Expect = 5e-69
Identities = 115/271 (42%), Positives = 171/271 (63%), Gaps = 6/271 (2%)
Query: 414 NLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPL 473
LT G + +V + L PL L +V + ++ QT+F ++ E K++
Sbjct: 278 TLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE-KDEGK---R 333
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
V+ + IEFR+V F+Y K + N+NF IPAGK+VA+VG SGSGKSTI LL RF
Sbjct: 334 VIERAKGDIEFRNVTFTYPGKEVPAL-RNINFKIPAGKTVALVGRSGSGKSTIANLLTRF 392
Query: 534 FEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK-SYEETIE 592
++ + G I +DG ++ D L SLR +A+V Q+ LF+DTI NI Y + S E+ E
Sbjct: 393 YDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEE 452
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
AA++A + I K N +T +GE G+ LSGG++QR+AIARA+L+++PIL+ DEATS+LD
Sbjct: 453 AARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 653 SITENNILSSLKTASRNKTTICIAHRLSTIK 683
+ +E I ++L +N+T++ IAHRLSTI+
Sbjct: 513 TESERAIQAALDELQKNRTSLVIAHRLSTIE 543
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 238 bits (608), Expect = 8e-68
Identities = 165/543 (30%), Positives = 257/543 (47%), Gaps = 63/543 (11%)
Query: 156 TGIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIA 215
TG V D T D + S I + I SS LR F R +I
Sbjct: 184 TGRVID------TLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIR 237
Query: 216 KNVFLHLHNLDLAFHLNRQTGAL--------SKIIDRGSRGINFVLSAMVFNIVPTIFEL 267
+++F L DL F +TG L + S +N +L +V + F L
Sbjct: 238 EDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFML 297
Query: 268 ALISSILSYKCGSEFSLLAVSCVG----IYTAYTLSITQWRTQFRVNMNKAENEAGNKAI 323
L S L+ +L+ + V ++ +++ Q +A +A A
Sbjct: 298 WL-SPRLTM-----VTLINLPLVFLAEKVFGKRYQLLSE-ELQ------EAVAKANQVAE 344
Query: 324 DSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTS 383
++L TV+ F E+ EA R++ L LN KA A +TS
Sbjct: 345 EALSGMRTVRSFAAEEGEASRFKEAL-----------EETLQLNKRKA-LAYAGYLWTTS 392
Query: 384 LATLNFGQSAIFSTAMTLSMIF-AAREIAHGNLTVGDLVMVNGLLFQLSM--PLGFLGSV 440
+ + + +++ + + G ++ G+LV LL+Q + + L V
Sbjct: 393 V----------LGMLIQVLVLYYGGQLVLTGKVSSGNLVSF--LLYQEQLGEAVRVLSYV 440
Query: 441 YREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIF 500
Y + QA + +F + ++P I PL L IEF+DV+FSY ++ +
Sbjct: 441 YSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNL---EGLIEFQDVSFSYPNRPDVPVL 497
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560
L FT+ G+ VA+VG SGSGKST+ LL ++P G + +DG + D L R +
Sbjct: 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557
Query: 561 AIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLK 620
A+V Q+PVLF ++ NI YG EE + AAK A+ H+ I+++PN Y+T+VGE+G +
Sbjct: 558 ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680
LSGG+KQR+AIARA+++ +L+ DEATS+LD+ E + S ASR T + IAHRLS
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASR--TVLLIAHRLS 675
Query: 681 TIK 683
T++
Sbjct: 676 TVE 678
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 206 bits (527), Expect = 2e-61
Identities = 92/202 (45%), Positives = 126/202 (62%), Gaps = 1/202 (0%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I F V F Y I N++ I G+ V IVG SGSGKST+ +L+ RF+ P G +
Sbjct: 1 ITFEHVRFRY-KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
+DG ++ D LRR + +V Q+ VLF+ +I NI D S E IEAAKLA H+
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHD 119
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
I + P Y+T VGE+G LSGG++QR+AIARA++ N IL+FDEATS+LD +E+ I+
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
Query: 662 SLKTASRNKTTICIAHRLSTIK 683
++ +T I IAHRLST+K
Sbjct: 180 NMHDICAGRTVIIIAHRLSTVK 201
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 219 bits (561), Expect = 3e-61
Identities = 117/359 (32%), Positives = 184/359 (51%), Gaps = 26/359 (7%)
Query: 323 IDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTST 382
++SL ET+K N E +++EQ + S + +
Sbjct: 328 VESLSGLETIKALNAEGR-------FQRRWEQTVAALARS------------GLKSRFLS 368
Query: 383 SLATLNFGQSAI-FSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVY 441
+LAT NF Q + + + I+ G LT+G L+ L + PLG L +
Sbjct: 369 NLAT-NFAQFIQQLVSVAIV--VVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLL 425
Query: 442 REVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFS 501
+QA +Q++ LM ++ L IEFR+V+F+Y + T +
Sbjct: 426 TRYQQAKTALQSLDELMQLP--VERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPAL-D 482
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
N++ TI G+ VAI+G GSGKST+++LL ++P G++ +DG +I +D LRR+I
Sbjct: 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542
Query: 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKL 621
VPQDP LF+ T+ NI G EE + AA+LA + + + P+ + Q+GERG L
Sbjct: 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602
Query: 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680
SGG++Q VA+ARA+L++ PIL+ DE TS++D+ +E LK KT + + HR S
Sbjct: 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 214 bits (548), Expect = 1e-60
Identities = 110/371 (29%), Positives = 164/371 (44%), Gaps = 34/371 (9%)
Query: 319 GNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAAL 378
+D L ET++ F + +R + + +A + L
Sbjct: 179 SGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSV------------------L 220
Query: 379 KTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLF-----QLSMP 433
+ + F SA+ LS+ A I L GDL + GL + P
Sbjct: 221 R-------IAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQP 273
Query: 434 LGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYID 493
L LGS + A +L+ P + V + IE N S+
Sbjct: 274 LRDLGSFF-HAAAAGEAAADKLFTLLESPVATPGSGEKAEV--ANEPPIEISLENLSFRY 330
Query: 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL 553
K S+LN TI AG+ A+VG SG+GKST++ LL F P G I ++G ++ D+
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390
Query: 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQ 613
++ R+ I+ V Q+P LF TI NI S EE I A A L + P+ +T
Sbjct: 391 EAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGL-LEFVPKPDGLDTV 449
Query: 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTI 673
+GE G LSGG+ QR+A+ARA+L +L+ DE T+ LD+ TE IL +L+ ++ KT +
Sbjct: 450 IGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVL 509
Query: 674 CIAHRLSTIKH 684
I HRL
Sbjct: 510 VITHRLEDAAD 520
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 203 bits (518), Expect = 2e-60
Identities = 86/200 (43%), Positives = 128/200 (64%), Gaps = 1/200 (0%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
IEFR+V+FSY ++ + N++ TI AG+ VAI+G GSGKST+++LL ++P +G+
Sbjct: 2 RIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
+ +DG +I +D LRR+I VPQD LF+ T+ NI G E + AA+LA +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ + K PN + Q+GERG LSGG++Q VA+ARA+L + PIL+ DE TS++D +E +
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 661 SSLKTASRNKTTICIAHRLS 680
L+ +KT I I HR S
Sbjct: 181 ERLRQLLGDKTLIIITHRPS 200
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 213 bits (543), Expect = 8e-60
Identities = 123/302 (40%), Positives = 180/302 (59%), Gaps = 20/302 (6%)
Query: 392 SAIFSTAMTLSM----IFAAREIAHGNLTVGDLVMVNG----LLFQLSMPLGFLGSVY-- 441
S + A T+SM + + G L+VG+++ G L+ +L GF+ ++
Sbjct: 243 SGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEA 302
Query: 442 REVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFS 501
R + F D++ +EP A LP V ++EFR + F + ++ +
Sbjct: 303 RAKLEDFFDLEDS-VFQREEPA---DAPELPNV----KGAVEFRHITFEF--ANSSQGVF 352
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
+++F AG++VAIVG +G+GK+T+I LL R ++P G I IDG +IN V +SLR+ IA
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412
Query: 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKL 621
V QD LF+ +I NI G + + EE EAAK A H+ I+K N Y+T VGERG +L
Sbjct: 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472
Query: 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLST 681
SGGE+QR+AIARAILKN PILV DEATS+LD TE + +++ +N+TT IAHRLST
Sbjct: 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLST 532
Query: 682 IK 683
++
Sbjct: 533 VR 534
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 201 bits (514), Expect = 1e-59
Identities = 80/202 (39%), Positives = 125/202 (61%), Gaps = 2/202 (0%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
IEF++V+ Y + + N++F+I G+ V IVG +GSGKS+++ L+R E ++G+
Sbjct: 2 DIEFKNVSLRYRP-NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
I IDG +I+ + L LR I+I+PQDPVLF TI N++ + S EE +A + L
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEY-SDEELWQALERVGLK 119
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ P +T V E G LS G++Q + +ARA+L+ + ILV DEAT+S+D T+ I
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 661 SSLKTASRNKTTICIAHRLSTI 682
+++ A ++ T + IAHRL TI
Sbjct: 180 KTIREAFKDCTVLTIAHRLDTI 201
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 197 bits (502), Expect = 5e-58
Identities = 84/203 (41%), Positives = 136/203 (66%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
++F++V F+Y + + +++FT+ G+ A+VG SGSGKST++ LL F++P G +
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
+DGK I+ + L +++V Q+PVLF ++ NI YG +S S+E EAA+ A H+
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHS 131
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
I + + Y+T+VGE+G +LSGG+KQRVAIARA+++N +L+ DEATS+LD+ +E +
Sbjct: 132 FISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
+L +T + IAHRLST++
Sbjct: 192 ALYDWPERRTVLVIAHRLSTVER 214
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 206 bits (526), Expect = 8e-58
Identities = 115/334 (34%), Positives = 171/334 (51%), Gaps = 20/334 (5%)
Query: 363 LATLN-FGKAQYEQAALKTSTS------LATLN--FGQSAIFSTAMTLSMIFAAREIAHG 413
L TL FG+A+ + AA++ S+ + L F SA+ TLS+ A I
Sbjct: 193 LPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGF- 251
Query: 414 NLTVGDLVMVNGLLFQL-----SMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKA 468
L GDL + GL L +PL LG+ Y + +F ++ P A
Sbjct: 252 RLLAGDLDLATGLFVLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAVLDAAPRPL--A 309
Query: 469 NALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIR 528
P V S+EF V+ +Y + + ++FT+P G+ VA+VG SG+GKST++
Sbjct: 310 GKAP-VTAAPAPSLEFSGVSVAYPGR-RPAL-RPVSFTVPPGERVALVGPSGAGKSTLLN 366
Query: 529 LLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYE 588
LL F +P G+I ++G + D D DS R IA VPQ P LF TI NI S
Sbjct: 367 LLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDA 426
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
E EA + A L + P +T +GE G LSGG+ QR+A+ARA L++ P+L+ DE T
Sbjct: 427 EIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486
Query: 649 SSLDSITENNILSSLKTASRNKTTICIAHRLSTI 682
+ LD+ TE +L +L+ ++ +T + + HRL+
Sbjct: 487 AHLDAETEAEVLEALRALAQGRTVLLVTHRLALA 520
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 208 bits (532), Expect = 2e-57
Identities = 149/513 (29%), Positives = 248/513 (48%), Gaps = 47/513 (9%)
Query: 181 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGAL-- 238
I +G IA I + ++ + + QR I + HL L ++F R+TG +
Sbjct: 198 ISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVS 257
Query: 239 -----SKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIY 293
S IID L++ + ++ ++ L ++ L + F L +S + +Y
Sbjct: 258 RFTDASSIID--------ALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLS-IPVY 308
Query: 294 TAYTLSITQWRTQFRVNMNKAENEA--GNKAIDSLINYETVKYFNNEKFEADRYEGVLKK 351
+ RT ++N + + A + I+ L ET+K +E + +
Sbjct: 309 AVIIILFK--RTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGD 366
Query: 352 YEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIA 411
Y + K + KA Q A+K T L LN I T L M
Sbjct: 367 YLNKSFK---------YQKADQGQQAIKAVTKL-ILNV---VILWTGAYLVM-------- 405
Query: 412 HGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANAL 471
G LT+G L+ N LL PL + ++ +++ A + + + L + NK
Sbjct: 406 RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRT 465
Query: 472 PLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY 531
L N I DV++SY + I S+++ TI IVG SGSGKST+ +LL
Sbjct: 466 EL--NNLNGDIVINDVSYSY--GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521
Query: 532 RFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK-SYEET 590
FF+ +G I ++G ++ D+D +LR+ I +PQ+P +F +IL N+ G K S +E
Sbjct: 522 GFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581
Query: 591 IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
A ++A++ + I P Y+T++ E G +SGG+KQR+A+ARA+L ++ +L+ DE+TS+
Sbjct: 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641
Query: 651 LDSITENNILSSLKTASRNKTTICIAHRLSTIK 683
LD+ITE I+++L ++KT I +AHRLS K
Sbjct: 642 LDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAK 673
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 191 bits (488), Expect = 2e-52
Identities = 101/280 (36%), Positives = 154/280 (55%), Gaps = 27/280 (9%)
Query: 412 HGNLTVGDL---VMVNGLLFQLSMPLGFL------GSV-YREVRQAFIDMQTMFTLMLKE 461
+G+LT+G L VM GL+ + L ++ GS Y +R ML E
Sbjct: 248 NGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRA-----------MLAE 296
Query: 462 -PTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSG 520
P +K+ + +P + +I F+Y + N+NFT+ G+ + I G +G
Sbjct: 297 APVVKDGSEPVPEGRGELDVNIR----QFTY-PQTDHPALENVNFTLKPGQMLGICGPTG 351
Query: 521 SGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINY 580
SGKST++ L+ R F+ + G I + + LDS R +A+V Q P LF DT+ NI
Sbjct: 352 SGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIAL 411
Query: 581 GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
G + +E A+LA +H+ I++ P Y+T+VGERG+ LSGG+KQR++IARA+L N
Sbjct: 412 GRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471
Query: 641 ILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680
IL+ D+A S++D TE+ IL +L+ +T I AHRLS
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS 511
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 193 bits (493), Expect = 4e-52
Identities = 136/520 (26%), Positives = 234/520 (45%), Gaps = 58/520 (11%)
Query: 182 ILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALS-- 239
+LG G+ + L+ + + ++ H+ L + F R G ++
Sbjct: 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASR 256
Query: 240 -KIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTL 298
++ D+ + ++ L+ + V +F L+ L Y +L + + A +
Sbjct: 257 VQLNDQVAEFLSGQLATTALDAVMLVFYALLM---LLYD-----PVLTLIGIAF-AAINV 307
Query: 299 SITQWRTQFRVNMN-KAENEAG---NKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQ 354
Q ++ RV+ N + + +AG AI L + ET+K E R+ G Y+
Sbjct: 308 LALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAG----YQA 363
Query: 355 AALKTSTSLATLNFGKAQYEQAALKT-STSLATLNFGQSAIFSTAMTLSMIFAAREIAHG 413
L L L L T L +LN + + ++ R + G
Sbjct: 364 KLLNAQQELGVLT--------QILGVLPTLLTSLN---------SALILVVGGLRVME-G 405
Query: 414 NLTVGDLVMVNGLLFQLSMPL----GFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKAN 469
LT+G LV L+ P+ GF G++ +E+ D+ + ++ +
Sbjct: 406 QLTIGMLVAFQSLMSSFLEPVNNLVGFGGTL-QELEG---DLNRLDDVLRNPVDPLLEEE 461
Query: 470 ALPLVLTTSNAS----IEFRDVNFSY--IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGK 523
P + + +E R++ F Y ++ + N + T+ G+ VA+VGGSGSGK
Sbjct: 462 EAPAAGSEPSPRLSGYVELRNITFGYSPLEPP---LIENFSLTLQPGQRVALVGGSGSGK 518
Query: 524 STIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK 583
STI +L+ ++P +G I DG ++ + L +A+V QD LF T+ N+ D
Sbjct: 519 STIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP 578
Query: 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILV 643
+ + + A K A +H+ I P Y+ ++ E G LSGG++QR+ IARA+++N IL+
Sbjct: 579 TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILI 638
Query: 644 FDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIK 683
DEATS+LD TE I +L+ R T I +AHRLSTI+
Sbjct: 639 LDEATSALDPETEKIIDDNLR--RRGCTCIIVAHRLSTIR 676
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 187 bits (477), Expect = 7e-51
Identities = 96/341 (28%), Positives = 159/341 (46%), Gaps = 20/341 (5%)
Query: 347 GVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFA 406
G Y A T S + KAQ +QA + + I + +++
Sbjct: 215 GAEDAYRTALEATEAS-----WLKAQRKQARFTGLS-----DAILLLIAGLLVIGLLLWM 264
Query: 407 AREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDM-QTMFTLMLKEPTIK 465
A ++ G L + L + L + AF + Q + + +
Sbjct: 265 AAQVGAGALAQPGAALA------LLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILD 318
Query: 466 NKANALPLV--LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGK 523
K T+ ++E R+V+F+Y + TK N N T+ G+ VAI+G SGSGK
Sbjct: 319 QKPEVTFPDEQTATTGQALELRNVSFTYPGQQTK-ALKNFNLTLAQGEKVAILGRSGSGK 377
Query: 524 STIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK 583
ST+++LL ++P G+I ++G I +D +LR I+++ Q LF T+ N+ +
Sbjct: 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP 437
Query: 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILV 643
S EE A + L + P+ T +GE G +LSGGE++R+A+ARA+L + P+ +
Sbjct: 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497
Query: 644 FDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
DE T LD ITE +L+ L + KT + + HRL ++
Sbjct: 498 LDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 179 bits (457), Expect = 2e-47
Identities = 96/305 (31%), Positives = 155/305 (50%), Gaps = 18/305 (5%)
Query: 393 AIFSTAM-TLSMI----FAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQA 447
+F+ + L+ A + L++G + N S + L + +
Sbjct: 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAV 421
Query: 448 FIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTI 507
+ ++ P + ++A P L+ +IE V F Y I +++ I
Sbjct: 422 IPLWERAKPILEALPEV-DEAKTDPGKLS---GAIEVDRVTFRY-RPDGPLILDDVSLQI 476
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP 567
G+ VAIVG SGSGKST++RLL F P +G+++ DG+++ +D+ ++RR + +V Q+
Sbjct: 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG 536
Query: 568 VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627
L +I NI G + +E EAA++A L I P T + E G LSGG++Q
Sbjct: 537 RLMSGSIFENIA-GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595
Query: 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLG 687
R+ IARA+++ IL+FDEATS+LD+ T+ + SL+ T I IAHRLSTI++
Sbjct: 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRN--- 650
Query: 688 YKAHR 692
A R
Sbjct: 651 --ADR 653
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 172 bits (438), Expect = 1e-45
Identities = 105/352 (29%), Positives = 165/352 (46%), Gaps = 53/352 (15%)
Query: 347 GVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMI-- 404
G +Y Q +T AQ QA L T S A + I + +T+ ++
Sbjct: 217 GAEDRYRQQLEQTEQQWL-----AAQRRQANL-TGLSQALM------ILANGLTVVLMLW 264
Query: 405 FAAREIAHGNLTVGDLV--MVNGLL--FQLSMPLG----FLGSVY---REVRQAFIDMQT 453
AA + GN G L+ V L F+ MP+ LG V R + +
Sbjct: 265 LAAGGVG-GNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINE------- 316
Query: 454 MFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSV 513
+ ++P + + S+ +V+F+Y D+ + L+ I AG+ V
Sbjct: 317 ---ITEQKPEVTFPTTSTA---AADQVSLTLNNVSFTYPDQPQP-VLKGLSLQIKAGEKV 369
Query: 514 AIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDT 573
A++G +G GKST+++LL R ++P G I ++G+ I D +LR+ I++V Q LF T
Sbjct: 370 ALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSAT 429
Query: 574 ILYNINYGDKSKSYEETIEA------AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627
+ N+ + S E IE KL + + W +GE G +LSGGE++
Sbjct: 430 LRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAW-------LGEGGRQLSGGEQR 482
Query: 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
R+ IARA+L + P+L+ DE T LD+ TE IL L ++NKT + I HRL
Sbjct: 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL 534
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 169 bits (430), Expect = 2e-44
Identities = 66/188 (35%), Positives = 117/188 (62%), Gaps = 1/188 (0%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K + LNFT+PAG+ +A+VG SG+GK++++ L F P G++ I+G + ++D +S
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW 421
Query: 557 RRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGE 616
R+H++ V Q+P L H T+ N+ G+ S E+ +A + A + + P +T +G+
Sbjct: 422 RKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
+ LS G+ QR+A+ARA+L+ +L+ DE T+SLD+ +E ++ +L ASR +TT+ +
Sbjct: 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT 541
Query: 677 HRLSTIKH 684
H+L +
Sbjct: 542 HQLEDLAQ 549
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 167 bits (426), Expect = 2e-44
Identities = 69/200 (34%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
++E RD++ Y + ++ +P G+ VAI+G SGSGKST++ L +P G
Sbjct: 333 PTLELRDLSAGYPG--APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQG 390
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADL 599
+ +DG ++ +D D +RR +++ QD LF T+ N+ + EE A + L
Sbjct: 391 EVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGL 450
Query: 600 HNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+ + P+ +T +GE G +LSGGE+QR+A+ARA+L + PIL+ DE T LD+ T + +
Sbjct: 451 ADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
Query: 660 LSSLKTASRNKTTICIAHRL 679
L L A +T + I H L
Sbjct: 511 LEDLLAALSGRTVVLITHHL 530
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 164 bits (417), Expect = 4e-43
Identities = 70/187 (37%), Positives = 117/187 (62%), Gaps = 1/187 (0%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K ++F++ AG+++AI+G SGSGKST+ RL+ + P +G++ +DG ++ D ++
Sbjct: 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390
Query: 557 RRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGE 616
+HI +PQD LF T+ NI ++ E+ IEAAKLA +H I++ P+ Y+T +G
Sbjct: 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGP 450
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICI 675
G LSGG++QR+A+ARA+ + ++V DE S+LD E + +++K +R T + I
Sbjct: 451 GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVI 510
Query: 676 AHRLSTI 682
HR S +
Sbjct: 511 THRPSLL 517
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 165 bits (419), Expect = 4e-43
Identities = 76/185 (41%), Positives = 117/185 (63%), Gaps = 1/185 (0%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K I ++F + AG+++ I+G SGSGKST+ RLL + P +G++ +DG ++ D + L
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408
Query: 557 RRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGE 616
RHI +PQD LF TI NI + E+ IEAA+LA +H I++ P Y+T++GE
Sbjct: 409 GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGE 468
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA-SRNKTTICI 675
G LSGG++QR+A+ARA+ + ++V DE S+LDS E + +++ A +R T + I
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528
Query: 676 AHRLS 680
AHR S
Sbjct: 529 AHRPS 533
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 152 bits (387), Expect = 2e-42
Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 20/202 (9%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
IE +++ Y + N++F + AG+ + IVG +G+GKST+I L+RF E G
Sbjct: 6 EIEVENLSVRY-APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK 64
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
I IDG +I+ + L+ LR + I+PQDP LF TI N++ D+ S EE A +
Sbjct: 65 IEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR----- 118
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
V E GL LS G++Q + +ARA+LK +LV DEAT+S+D T+ I
Sbjct: 119 -------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQ 165
Query: 661 SSLKTASRNKTTICIAHRLSTI 682
+++ N T + IAHRL TI
Sbjct: 166 KTIREEFTNSTILTIAHRLRTI 187
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 151 bits (384), Expect = 3e-42
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 41/203 (20%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+ +V+FSY ++ + + NL+ + G+ +A++G SGSGKST+++LL +P G I
Sbjct: 1 LSINNVSFSYPEQEQQ-VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
+DG ++D++ +L I+++ Q P LF T+ N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
G + SGGE+QR+A+AR +L++ PI++ DE T LD ITE +LS
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
+ ++KT I I H L+ I+H
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEH 162
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 148 bits (377), Expect = 2e-41
Identities = 63/203 (31%), Positives = 93/203 (45%), Gaps = 44/203 (21%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+E +V+F Y + N++F+I G+S+AI+G SGSGKST+ RL+ P +G +
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
+DG +I+ D + L H+ +PQD LF +I NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
LSGG++QR+ +ARA+ N ILV DE S LD E +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 662 SLKTAS-RNKTTICIAHRLSTIK 683
++ T I IAHR T+
Sbjct: 138 AIAALKAAGATRIVIAHRPETLA 160
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 149 bits (379), Expect = 5e-41
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 21/212 (9%)
Query: 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY 542
E ++++FSY + +++ TI G+ V IVG +GSGKST++RLL P +G +
Sbjct: 1 ELKNLSFSY-PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 543 IDGKNINDVDLDSLRRHIAIVPQDP--VLFHDTILYNINYG------DKSKSYEETIEAA 594
+DGK++ + L LRR + +V Q+P F T+ + +G + + E EA
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 595 KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654
+L L + LSGG+KQRVAIA + + IL+ DE T+ LD
Sbjct: 120 ELVGL-EGLRDRSPFT----------LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 655 TENNILSSLKT-ASRNKTTICIAHRLSTIKHL 685
+L LK + KT I + H L + L
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 157 bits (398), Expect = 3e-40
Identities = 94/273 (34%), Positives = 153/273 (56%), Gaps = 14/273 (5%)
Query: 413 GNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALP 472
G + VG L L +L+ PL L + ++QA + + +F LM P + + P
Sbjct: 277 GTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELM-DGPRQQYGNDDRP 335
Query: 473 LVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR 532
L + I+ +V+F+Y + + N+N ++P+ VA+VG +GSGKST+ LL
Sbjct: 336 L----QSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG 389
Query: 533 FFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYE---E 589
++ G I +DG+ ++ + LR+ +A+V QDPV+ DT L N+ G + S E +
Sbjct: 390 YYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-RDISEEQVWQ 448
Query: 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
+E +LA+L S+ P+ T +GE+G LS G+KQ +A+AR +++ IL+ DEAT+
Sbjct: 449 ALETVQLAELARSL---PDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505
Query: 650 SLDSITENNILSSLKTASRNKTTICIAHRLSTI 682
++DS TE I +L + T + IAHRLSTI
Sbjct: 506 NIDSGTEQAIQQALAAVREHTTLVVIAHRLSTI 538
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 144 bits (366), Expect = 7e-40
Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 47/209 (22%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+E ++V+ Y K + ++++ I AG+ VA++G SGSGKST++R + EP++G+I
Sbjct: 1 LELKNVSKRY---GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 542 YIDGKNINDVDLDS--LRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLAD 598
IDG+++ D++ + LRR I +V QD LF H T+L NI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 599 LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENN 658
LSGG++QRVA+ARA+ + +L+ DE TS+LD IT
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 659 ILSSLKT--ASRNKTTICIAHRLSTIKHL 685
+ + LK+ A T + + H L L
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARL 167
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 145 bits (367), Expect = 2e-39
Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 30/212 (14%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF-----FEP 536
IE RD+N Y DKH +++ IP G+ A++G SG GKST++RLL R P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 537 NAGAIYIDGKNINDVDLD--SLRRHIAIVPQDPVLFHDTILYNINYGDK------SKSYE 588
+ G + +DGK+I D+D+D LRR + +V Q P F +I N+ YG + + +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 589 ETIEAA-KLADLHNSIIKWPNHYETQVGER--GLKLSGGEKQRVAIARAILKNTPILVFD 645
E +E A + A L W V +R L LSGG++QR+ +ARA+ +L+ D
Sbjct: 118 ERVEEALRKAAL------WDE-----VKDRLHALGLSGGQQQRLCLARALANEPEVLLLD 166
Query: 646 EATSSLDSITENNILSSLKTASRNKTTICIAH 677
E TS+LD I+ I + + T + + H
Sbjct: 167 EPTSALDPISTAKIEELIAELKKEYTIVIVTH 198
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 141 bits (357), Expect = 7e-38
Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 27/214 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE R + S+ + + ++ + G+ +AI+G SGSGKST++RL+ P++G +
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 542 YIDGKNI---NDVDLDSLRRHIAIVPQDPVLFHD-TILYNINYG--DKSKSYEETIE--- 592
IDG++I ++ +L LRR + ++ Q LF T+ N+ + + ++ EE I
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 593 AAKLA--DLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
KL L + +P E LSGG K+RVA+ARA+ + +L++DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYP-------AE----LSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 651 LDSITENNILSSLKT--ASRNKTTICIAHRLSTI 682
LD I I +++ T+I + H L T
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA 200
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 140 bits (355), Expect = 7e-38
Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 25/205 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+E + ++ +Y + R +L+ T+ G+ +A++G SG GK+T++RL+ P++G I
Sbjct: 1 LELKGLSKTY---GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG-DKSKSYEETI-----EAA 594
IDG+++ V + RR+I +V QD LF H T+ NI +G + I E
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 595 KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654
+L L + ++P+ +LSGG++QRVA+ARA+ + +L+ DE S+LD+
Sbjct: 116 ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 655 TENNILSSLKTASRN--KTTICIAH 677
+ LK R TTI + H
Sbjct: 165 LREELREELKELQRELGITTIYVTH 189
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 151 bits (383), Expect = 2e-37
Identities = 98/293 (33%), Positives = 153/293 (52%), Gaps = 65/293 (22%)
Query: 453 TMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKS 512
+++ ++ ++P ++N + L I+F++V F Y + I+ +LNFT+ GK+
Sbjct: 357 SLYEIINRKPLVENNDDGKKL---KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKT 413
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI-DGKNINDVDLDSLRRHIAIVPQDPVLFH 571
A VG SG GKSTI++L+ R ++P G I I D N+ D++L R I +V QDP+LF
Sbjct: 414 YAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS 473
Query: 572 DTILYNINYG----------------DKSKSYE--------------------------- 588
++I NI Y D + S E
Sbjct: 474 NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533
Query: 589 --------ETIEAAKLAD------LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634
+TI+ +++ D +H+ + P+ YET VG KLSGG+KQR++IARA
Sbjct: 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARA 593
Query: 635 ILKNTPILVFDEATSSLDSITE---NNILSSLKTASRNKTTICIAHRLSTIKH 684
I++N IL+ DEATSSLD+ +E +++LK + N+ TI IAHRLSTI++
Sbjct: 594 IIRNPKILILDEATSSLDNKSEYLVQKTINNLK-GNENRITIIIAHRLSTIRY 645
Score = 138 bits (348), Expect = 3e-33
Identities = 112/364 (30%), Positives = 166/364 (45%), Gaps = 61/364 (16%)
Query: 379 KTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVM-VNGLLFQLSMPLGFL 437
KT + F QSA + + F + I G + V D + + LF S G L
Sbjct: 1062 KTLVNSMLWGFSQSAQLFIN-SFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYA-GKL 1119
Query: 438 GSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTS--NASIEFRDVNFSYIDKH 495
S+ + A + + + L++++ I + N + + IE DVNF YI +
Sbjct: 1120 MSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRP 1179
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF--------------------- 534
I+ +L F+ + K+ AIVG +GSGKST++ LL RF+
Sbjct: 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNE 1239
Query: 535 -----------------------EPNAGAIYIDGKNINDVDLD----------SLRRHIA 561
E +G KN + LD LR +
Sbjct: 1240 QDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS 1299
Query: 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKL 621
IV Q+P+LF+ +I NI +G + + E+ A K A + I PN Y+T VG G L
Sbjct: 1300 IVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSL 1359
Query: 622 SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA--SRNKTTICIAHRL 679
SGG+KQR+AIARA+L+ IL+ DEATSSLDS +E I ++ +KT I IAHR+
Sbjct: 1360 SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419
Query: 680 STIK 683
++IK
Sbjct: 1420 ASIK 1423
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 138 bits (350), Expect = 3e-37
Identities = 67/211 (31%), Positives = 110/211 (52%), Gaps = 26/211 (12%)
Query: 482 IEFRDVNFSYIDK--HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
I D +F++ T ++N +P G+ VAIVG GSGKS+++ L E +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG---DKSKSYEETIEAAKL 596
++ + G IA V Q+P + + TI NI +G D+ + YE+ I+A L
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEER-YEKVIKACAL 106
Query: 597 -ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
DL P+ T++GE+G+ LSGG+KQR+++ARA+ + I + D+ S++D+
Sbjct: 107 EPDLEI----LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162
Query: 656 ENNILSS--LKTASRNKTTICIAHRLSTIKH 684
+I + L NKT I + H+L + H
Sbjct: 163 GRHIFENCILGLLLNNKTRILVTHQLQLLPH 193
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 138 bits (350), Expect = 5e-37
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 29/222 (13%)
Query: 482 IEFRDVNFSY-IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
+E ++++ S+ + + +++F+I G+++ +VG SGSGKST+ R + +P +G+
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 541 IYIDGKNINDVD---LDSLRRHIAIVPQD------PVLFHDTI------LYNINYGDKSK 585
I DGK++ + R+ I +V QD P + TI I+ K
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 586 SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645
+ L + + N Y + LSGG++QRVAIARA+ N +L+ D
Sbjct: 119 EARKEAVLLLLVGVGLP-EEVLNRYPHE-------LSGGQRQRVAIARALALNPKLLIAD 170
Query: 646 EATSSLDSITENNILSSLK--TASRNKTTICIAHRLSTIKHL 685
E TS+LD + IL LK T + I H L + +
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI 212
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 138 bits (351), Expect = 6e-37
Identities = 71/209 (33%), Positives = 111/209 (53%), Gaps = 30/209 (14%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE ++++ S+ DK + ++ ++ G+ V I+G SGSGKST++R L EP++G+I
Sbjct: 3 IEIKNLSKSFGDKE---VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 542 YIDGKNI-NDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGD---KSKSYEETIEAAK- 595
+DG+++ + D+ LRR + +V Q LF H T+L N+ K S E E A
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 596 ------LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
LAD K + Y Q LSGG++QRVAIARA+ + +++FDE TS
Sbjct: 120 LLEKVGLAD------KA-DAYPAQ-------LSGGQQQRVAIARALAMDPKVMLFDEPTS 165
Query: 650 SLDSITENNILSSLKTASRNKTT-ICIAH 677
+LD +L +K + T I + H
Sbjct: 166 ALDPELVGEVLDVMKDLAEEGMTMIIVTH 194
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 138 bits (349), Expect = 7e-37
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 30/213 (14%)
Query: 482 IEFRDVNFSYIDKHTK-RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
IE ++V+ Y K ++N I AG+ VAIVG SGSGKST++ LL +P +G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 541 IYIDGKNI---NDVDLDSLRR-HIAIVPQDPVLFHD-TILYNI---------NYGDKSKS 586
+ I+GK++ ++ +L LRR I V Q+ L D T+L N+ + G + ++
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
EE +E L D ++ LSGG++QRVAIARA++ N I++ DE
Sbjct: 122 AEELLEVLGLEDRLL------KKKPSE-------LSGGQQQRVAIARALINNPKIILADE 168
Query: 647 ATSSLDSITENNILSSLKTASR--NKTTICIAH 677
T +LDS T +L L+ ++ KT I + H
Sbjct: 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 136 bits (346), Expect = 1e-36
Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 25/207 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE ++++ S+ D H + ++ T+ G+ V I+G SGSGKST++R + EP++G I
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 542 YIDGKNIND--VDLDSLRRHIAIVPQDPVLF-HDTILYNINYG-------DKSKSYEETI 591
IDG + D +++ LR+ + +V Q LF H T+L NI K+++ E +
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
E + L + +P LSGG++QRVAIARA+ N +++FDE TS+L
Sbjct: 118 ELLEKVGLADKADAYPAQ-----------LSGGQQQRVAIARALAMNPKVMLFDEPTSAL 166
Query: 652 DSITENNILSSLKTASRNKTT-ICIAH 677
D +L +K + T + + H
Sbjct: 167 DPELVGEVLDVMKDLAEEGMTMVVVTH 193
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 136 bits (345), Expect = 6e-36
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 29/212 (13%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
+E +++F Y K I +L+F+IP G+ I+G +GSGKST+++ L +P +G
Sbjct: 1 MMLEVENLSFGY---GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-----HDTILY----NINY--GDKSKSYE 588
+ +DGK+I + L + +A VPQ P ++ +L ++ + E
Sbjct: 58 EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEA 647
EA +L L H +R + LSGGE+QRV IARA+ + TPIL+ DE
Sbjct: 118 IVEEALELLGLE--------HLA----DRPVDELSGGERQRVLIARALAQETPILLLDEP 165
Query: 648 TSSLDSITENNILSSLK--TASRNKTTICIAH 677
TS LD + +L L+ + T + + H
Sbjct: 166 TSHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 134 bits (340), Expect = 1e-35
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 24/212 (11%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE +++F Y K +++ I G+ V ++G +GSGKST+++LL +P +G +
Sbjct: 4 IEAENLSFRY--PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 542 YIDGKNI-NDVDLDSLRRHIAIVPQDPV--LFHDTILYNINYG------DKSKSYEETIE 592
+DG + ++ L LR+ + +V Q+P LF T+ + +G + + E E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
A +L L + + P + LSGG+KQRVAIA + IL+ DE T+ LD
Sbjct: 122 ALELVGLEELLDRPPFN-----------LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 653 SITENNILSSLKT--ASRNKTTICIAHRLSTI 682
+L LK KT I + H L +
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELV 202
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 145 bits (367), Expect = 2e-35
Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 4/202 (1%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+EFR+ Y + + ++N TI G+ V IVG +G+GKS++ L+R E G I
Sbjct: 1285 VEFRNYCLRY-REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI 1343
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNIN-YGDKSKSYEETIEAAKLADLH 600
IDG NI + L LR I I+PQDPVLF ++ N++ + S EE A +LA L
Sbjct: 1344 IIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS--QYSDEEVWWALELAHLK 1401
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ P+ + + E G LS G++Q V +ARA+L+ T ILV DEAT+++D T+N I
Sbjct: 1402 TFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ 1461
Query: 661 SSLKTASRNKTTICIAHRLSTI 682
S+++T + T + IAHRL+TI
Sbjct: 1462 STIRTQFEDCTVLTIAHRLNTI 1483
Score = 98.9 bits (246), Expect = 5e-21
Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 26/316 (8%)
Query: 372 QYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQ-L 430
Q E LK S L + + L + N+ + V+ LF L
Sbjct: 527 QEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNIL 586
Query: 431 SMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFS 490
PL L V + QA + ++ + + E + + N SI + F+
Sbjct: 587 RFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGN-SITVHNATFT 645
Query: 491 YIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550
+ + + + F+IP G VA+VG G GKS+++ L + G +++ G
Sbjct: 646 WA-RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS---- 700
Query: 551 VDLDSLRRHIAIVPQDPVLFHDTILYNINYGD--KSKSYEETIEA-AKLADLHNSIIKWP 607
+A VPQ + +D++ NI +G K Y++ +EA A L DL P
Sbjct: 701 ---------VAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLE----ILP 747
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL---K 664
+ T++GE+G+ LSGG+KQRV++ARA+ N I +FD+ S++D+ +I + +
Sbjct: 748 SGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE 807
Query: 665 TASRNKTTICIAHRLS 680
+NKT I + H +S
Sbjct: 808 GVLKNKTRILVTHGIS 823
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 135 bits (343), Expect = 2e-35
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 29/216 (13%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE R++ Y K ++F + G+ ++G +G+GK+T++++L +P +G I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-----HDTI-----LYNINYGDKSKSYEETI 591
+ G ++ + +RR I VPQ+P L+ + + LY ++ + + EE +
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
E L D N ++ LSGG KQR++IA A+L + +L+ DE TS L
Sbjct: 122 ELFGLEDKANKKVR--------------TLSGGMKQRLSIALALLHDPELLILDEPTSGL 167
Query: 652 DSITENNILSSLKT-ASRNKTTICIA-HRLSTIKHL 685
D + I L+ A TI ++ H L + L
Sbjct: 168 DPESRREIWELLRELAKEGGVTILLSTHILEEAEEL 203
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 131 bits (332), Expect = 3e-35
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 45/198 (22%)
Query: 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY 542
E +++ Y + + +L+ +I AG+ V I+G +G+GKST+++ L +P++G I
Sbjct: 1 EVENLSVGY---GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 543 IDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNS 602
+DGK++ + L R IA VPQ +E LA L
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ------------------------ALELLGLAHL--- 90
Query: 603 IIKWPNHYETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
+R LSGGE+QRV +ARA+ + PIL+ DE TS LD + +L
Sbjct: 91 ------------ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 662 SLK--TASRNKTTICIAH 677
L+ R KT + + H
Sbjct: 139 LLRRLARERGKTVVMVLH 156
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 133 bits (337), Expect = 5e-35
Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 23/217 (10%)
Query: 481 SIEFRDVNFSYIDKHT-KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
+ R+++ Y +N++ I G+++ IVG SGSGKST+ RLL +P++G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 540 AIYIDGKNI-NDVDLDSLRRHIAIVPQDPVL-FH-----DTILYN-INYGDKSKSYEETI 591
+I +DGK + + R + +V QDP + IL + SKS +
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 592 EAAKLADLHNSII-KWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
E L S + + P+ +LSGG++QR+AIARA++ +L+ DE TS+
Sbjct: 123 ELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 651 LDSITENNILSSLKT--ASRNKTTICIAHRLSTIKHL 685
LD + IL+ L R T + I+H L+ ++H+
Sbjct: 172 LDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM 208
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 133 bits (338), Expect = 5e-35
Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 476 TTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535
+ IE R V S+ D+ I ++ +P G+ +AI+GGSGSGKST++RL+
Sbjct: 3 ASPEPLIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59
Query: 536 PNAGAIYIDGKNI---NDVDLDSLRRHIAIVPQDPVLFHD-TILYNI-----NYGDKSKS 586
P+ G I IDG++I ++ +L +R+ + ++ Q LF T+ N+ + +S
Sbjct: 60 PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES 119
Query: 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGL-------KLSGGEKQRVAIARAILKNT 639
+ KL VG RG +LSGG ++RVA+ARAI +
Sbjct: 120 LIRELVLMKLE---------------LVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164
Query: 640 PILVFDEATSSLDSITENNILSSLKT--ASRNKTTICIAHRLSTI 682
+L DE TS LD I+ I ++ + T I + H L ++
Sbjct: 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL 209
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 133 bits (337), Expect = 4e-34
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 482 IEFRDVNFSYIDKHTKRI--FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
IE +V+ ++ T + +++ IP G+ I+G SG+GKST++RL+ P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 540 AIYIDGKNINDVD---LDSLRRHIAIVPQDPVLFHD-TILYNINYG------DKSKSYEE 589
++++DG+++ + L LR+ I ++ Q L T+ N+ + K++ +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
E +L L + + Y Q LSGG+KQRVAIARA+ N IL+ DEATS
Sbjct: 122 VAELLELVGLSD----KADRYPAQ-------LSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 650 SLDSITENNILSSLK--TASRNKTTICIAHRLSTIK 683
+LD T +IL LK T + I H + +K
Sbjct: 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEVVK 206
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 132 bits (333), Expect = 6e-34
Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 23/206 (11%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IEF +V+ Y K+ ++N TI G+ + ++G SGSGK+T ++++ R EP +G I
Sbjct: 2 IEFENVSKRY---GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINY------GDKSKSYEETIEAA 594
IDG++I+D+D LRR I V Q LF H T+ NI DK + + E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 595 KLADLHNSIIKWPNHYETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
L L P+ Y +R LSGG++QRV +ARA+ + PIL+ DE +LD
Sbjct: 119 DLVGLD------PSEY----ADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168
Query: 654 ITENNILSSLKTASRN--KTTICIAH 677
IT + +K + KT + + H
Sbjct: 169 ITRKQLQEEIKELQKELGKTIVFVTH 194
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 129 bits (326), Expect = 9e-34
Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 16/203 (7%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IEF +V Y K+ +NLN I G+ + ++G SGSGK+T ++++ R EP +G I
Sbjct: 1 IEFENVTKRY--GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSY-EETIEA-AK--L 596
+IDG++I + D LRR I V Q LF H T+ NI K + +E I A L
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 597 ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITE 656
A + ++ + Y + LSGG++QRV +ARA+ + P+L+ DE +LD IT
Sbjct: 119 ALVGLDPAEFADRYPHE-------LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171
Query: 657 NNILSSLKTASR--NKTTICIAH 677
+ + K + KT + + H
Sbjct: 172 DQLQEEFKRLQQELGKTIVFVTH 194
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 129 bits (325), Expect = 1e-33
Identities = 81/213 (38%), Positives = 115/213 (53%), Gaps = 17/213 (7%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IEF++V++S K I +++ G IVG SG+GKST+I+L+ R +P G+I
Sbjct: 4 IEFKEVSYSSFGKE---ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
IDG +I +D+ LRR I +V Q P LF T+ NI YG K E+ ++ + +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKG-EKNVD----VEYYL 115
Query: 602 SIIKWPNHYETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
SI+ Y T R +K LSGGE QRV+IAR + N +L+ DE TS+LD T I+
Sbjct: 116 SIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEII 170
Query: 661 SSLKTASRNK---TTICIAHRLSTIKHLLGYKA 690
L +NK T I I H + K + Y A
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTA 203
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 126 bits (320), Expect = 3e-33
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 23/196 (11%)
Query: 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN---IND 550
K I +LN TI GK AI+G SGSGKST++ ++ + ++G +Y++G+ +N
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNS 67
Query: 551 VDLDSLRR-HIAIVPQDPVLFHD-TILYNINYG------DKSKSYEETIEAAKLADLHNS 602
RR + + Q+ L + T+ N++ G K + E+ EA + L+
Sbjct: 68 KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK 127
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
+ + YE LSGGE+QRVA+ARAILK P+++ DE T SLD + +L
Sbjct: 128 LKQKI--YE---------LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 663 LKT-ASRNKTTICIAH 677
L KT I + H
Sbjct: 177 LLELNDEGKTIIIVTH 192
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 126 bits (320), Expect = 4e-33
Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 26/206 (12%)
Query: 482 IEFRDVNFSYIDKH-TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
+E R+V+ +Y +++ ++ G+ VA+VG SG GKST++R++ P +G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG------DKSKSYEETIEA 593
+ +DG+ + V Q L T+L N+ G K+++ E E
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+L L N Y Q LSGG +QRVA+ARA+ + +L+ DE S+LD+
Sbjct: 116 LELVGLSGFE----NAYPHQ-------LSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 654 ITENNILSSLKTASR--NKTTICIAH 677
+T + L R KT + + H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 126 bits (320), Expect = 4e-33
Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 24/213 (11%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I F +V+ +Y + +++F IP G+ V + G SG+GKST+++L+Y P G I
Sbjct: 2 IRFENVSKAY--PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 542 YIDGKNINDV---DLDSLRRHIAIVPQD-PVLFHDTILYNINY-----GDKSKSYEETIE 592
++G +++ + ++ LRR I +V QD +L T+ N+ G + +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 593 AA-KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
L L + P+ LSGGE+QRVAIARAI+ +L+ DE T +L
Sbjct: 120 EVLDLVGLKHKARALPSQ-----------LSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 652 DSITENNILSSLKTASRNKTTICIA-HRLSTIK 683
D I+ + +R TT+ +A H L +
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 128 bits (323), Expect = 6e-33
Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 24/214 (11%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
+ + I+ +V+FSY N++F I G+ VAI+G +GSGKSTI ++L
Sbjct: 1 IKNKSVMIKVENVSFSY-PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 535 EPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP------VLFHDTI---LYNINYGDKSK 585
+P +G I IDG I+ +L +R+ I I+ Q+P D I L N K
Sbjct: 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKV-PPKK 118
Query: 586 SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645
+ + AK + + + K P LSGG+KQRVAIA + N I++FD
Sbjct: 119 MKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIASVLALNPEIIIFD 167
Query: 646 EATSSLDSITENNILSSLKT--ASRNKTTICIAH 677
E+TS LD + I + +R KT I I H
Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH 201
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 126 bits (318), Expect = 9e-33
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 31/213 (14%)
Query: 482 IEFRDVNFSY-IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
IE ++++ +Y + ++ +I G+ VAIVG SGSGKST++ +L P +G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 541 IYIDGKNI---NDVDLDSLRR-HIAIVPQDPVLFHD-TILYNINY-----GDKSKSYE-- 588
+ +DG +I ++ +L + RR HI V Q L D T L N+ G K
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 589 --ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
E +E L D N HY ++ LSGG++QRVAIARA+ + I++ DE
Sbjct: 121 AEELLERVGLGDRLN-------HYPSE-------LSGGQQQRVAIARALANDPKIILADE 166
Query: 647 ATSSLDSITENNILSSLK--TASRNKTTICIAH 677
T +LDS T ++ L+ T + + H
Sbjct: 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 129 bits (326), Expect = 1e-32
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 25/208 (12%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
A +E ++V S+ + + ++N I G+ V ++G SG GKST++R++ EP +G
Sbjct: 2 AELELKNVRKSF---GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKS-KSYEETI-----E 592
I IDG+++ DL +R IA+V Q+ L+ H T+ NI +G K + I E
Sbjct: 59 EILIDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKE 116
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
AKL L + ++ + L+LSGG++QRVA+ARA+++ + + DE S+LD
Sbjct: 117 VAKLLGLEH-LLNR----------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165
Query: 653 SITENNILSSLKTASR--NKTTICIAHR 678
+ + S +K TTI + H
Sbjct: 166 AKLRVLMRSEIKKLHERLGTTTIYVTHD 193
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 126 bits (319), Expect = 1e-32
Identities = 80/214 (37%), Positives = 111/214 (51%), Gaps = 38/214 (17%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---- 537
IE RD+N Y DKH ++N IP K A++G SG GKST++R L R +
Sbjct: 8 IEVRDLNLYYGDKH---ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 538 -AGAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYG-----DKSKSYEE 589
G + +DGKNI D VD+ LRR + +V Q P F +I N+ YG K K +E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 590 TIEAA-KLADLHNSIIKWPNHYETQVGER----GLKLSGGEKQRVAIARAILKNTPILVF 644
+E++ K A L W +V +R L LSGG++QR+ IARA+ +L+
Sbjct: 125 IVESSLKKAAL------W-----DEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173
Query: 645 DEATSSLDSITENNI---LSSLKTASRNKTTICI 675
DE TS+LD I+ I ++ LK K TI I
Sbjct: 174 DEPTSALDPISTLKIEELITELK----KKYTIVI 203
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 129 bits (326), Expect = 1e-32
Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 26/186 (13%)
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
++E R+V+ S+ +++ I G+ V ++G SG GK+T++R++ F +P
Sbjct: 1 MPKPALEIRNVSKSF---GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP 57
Query: 537 NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG--DKSKSYEETI-- 591
++G I +DG++I DV + +R I +V Q LF H T+ N+ +G + K + I
Sbjct: 58 SSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKA 115
Query: 592 ---EAAKLADLHNSIIKWPNHYETQVGER-GLKLSGGEKQRVAIARAILKNTPILVFDEA 647
EA +L L +R +LSGG++QRVA+ARA++ +L+ DE
Sbjct: 116 RVEEALELVGL------------EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163
Query: 648 TSSLDS 653
S+LD+
Sbjct: 164 LSALDA 169
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 124 bits (314), Expect = 2e-32
Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 24/212 (11%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IEF +V+ +Y +++ I G+ + + G SG+GK+T+++LLY P+ G +
Sbjct: 2 IEFHNVSKAYPGGV--AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 542 YIDGKNINDV---DLDSLRRHIAIVPQD-PVLFHDTILYNINY-----GDKSKSYEETIE 592
I G+++N + L LRR I +V QD +L T+ N+ G K + + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 593 AA-KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
AA + L + + + Q LSGGE+QRVAIARAI+ + P+L+ DE T +L
Sbjct: 120 AALRQVGLEHKA----DAFPEQ-------LSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 652 DSITENNILSSLKTASRNKTTICIA-HRLSTI 682
D IL LK ++ TT+ +A H LS +
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 126 bits (319), Expect = 1e-31
Identities = 68/191 (35%), Positives = 97/191 (50%), Gaps = 24/191 (12%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL----R 557
+ + I G+ I+G SGSGKST +R+L R EP AG I+IDG+NI L R
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 558 RHIAIVPQDPVLF-HDTILYNINYG------DKSKSYEETIEAAKLADLHNSIIKWPNHY 610
+ I +V Q LF H TIL N + G + + E+ +E KL L ++P+
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD-- 128
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN- 669
+LSGG +QRV +ARA+ IL+ DEA S+LD + +++ LK
Sbjct: 129 ---------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 670 -KTTICIAHRL 679
KT + I H L
Sbjct: 180 QKTIVFITHDL 190
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 122 bits (308), Expect = 3e-31
Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 36/211 (17%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
A +E V+ S+ + ++N ++ G+ VAI+G SG GKST++RL+ +P +G
Sbjct: 2 ALLEIEGVSKSF---GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG--DKSKSYEETIEAAK- 595
+ +DG+ + I V Q+ L T+L N+ G + KS E E AK
Sbjct: 59 EVLLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKE 113
Query: 596 ------LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
LA + K+P+ +LSGG +QRVAIARA+ +L+ DE
Sbjct: 114 LLELVGLAGFED---KYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFG 159
Query: 650 SLDSITE---NNILSSLKTASRNKTTICIAH 677
+LD++T + L L KT + + H
Sbjct: 160 ALDALTREELQDELLRLW-EETRKTVLLVTH 189
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 120 bits (303), Expect = 4e-31
Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 46/210 (21%)
Query: 480 ASIEFRDVNF---SYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL--YRFF 534
++ FR++ S K K++ N++ G+ AI+G SG+GKST++ L R
Sbjct: 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 535 EPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIE- 592
+G + I+G+ + D S R+ I VPQD +L T+ ET+
Sbjct: 62 LGVSGEVLINGRPL---DKRSFRKIIGYVPQDDILHPTLTV-------------RETLMF 105
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
AAKL RGL SGGE++RV+IA ++ N +L DE TS LD
Sbjct: 106 AAKL--------------------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Query: 653 SITENNILSSLKT-ASRNKTTICIAHRLST 681
S + ++S L+ A +T IC H+ S+
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSS 173
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 121 bits (305), Expect = 5e-31
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 30/218 (13%)
Query: 482 IEFRDVNFSYIDKHTK-RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
IE ++V+ + D K +++ ++P G+ I+G SG+GKST+IR + P +G+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 541 IYIDGKNINDV---DLDSLRRHIAIVPQDPVLFHD-TILYNINY----GDKSKSY----- 587
+ +DG ++ + +L RR I ++ Q L T+ N+ K+
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
E +E L D ++ Y Q LSGG+KQRV IARA+ N +L+ DEA
Sbjct: 122 LELLELVGLEDKADA-------YPAQ-------LSGGQKQRVGIARALANNPKVLLCDEA 167
Query: 648 TSSLDSITENNILSSLKT--ASRNKTTICIAHRLSTIK 683
TS+LD T +IL+ L+ T + I H + +K
Sbjct: 168 TSALDPETTQSILALLRDINRELGLTIVLITHEMEVVK 205
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 122 bits (308), Expect = 5e-31
Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 24/191 (12%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI---NDVDLDSLRR 558
+++ + G+ I+G SGSGKST++R + R EP +G + IDG++I + +L LRR
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 559 H-IAIVPQDPVLF-HDTILYNINYG------DKSKSYEETIEAAKLADLHNSIIKWPNHY 610
I++V Q L H T+L N+ +G +++ E EA +L L W + Y
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG----WEHKY 157
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT--ASR 668
+ LSGG +QRV +ARA+ + IL+ DEA S+LD + + L A
Sbjct: 158 PDE-------LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210
Query: 669 NKTTICIAHRL 679
KT + I H L
Sbjct: 211 QKTIVFITHDL 221
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 122 bits (308), Expect = 2e-30
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 37/230 (16%)
Query: 482 IEFRDVNFSY-IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKST----IIRLLYRFFEP 536
+E ++++ S+ D + ++F + G+ + IVG SGSGKS I+ LL +P
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLP---KP 58
Query: 537 NA----GAIYIDGKNINDVDLDSLR----RHIAIVPQDPVL-----------FHDTILYN 577
NA G I DGK++ + LR + IA++ QDP+ + + +
Sbjct: 59 NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH 118
Query: 578 INYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637
K ++ E IE +L + + + Y + LSGG +QRV IA A+
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRL-KSYPHE-------LSGGMRQRVMIAMALAL 170
Query: 638 NTPILVFDEATSSLDSITENNILSSLK--TASRNKTTICIAHRLSTIKHL 685
N +L+ DE T++LD + IL LK + I I H L + +
Sbjct: 171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEI 220
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 118 bits (298), Expect = 2e-30
Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 28/230 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IEF +V +Y + +N +I AG+ V +VG SG+GKST+++L+Y+ P +G I
Sbjct: 1 IEFINVTKTY--PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 542 YIDGKNINDVD---LDSLRRHIAIVPQD-PVLFHDTILYNINY-----GDKSKSYEETIE 592
++G++++D+ + LRR I +V QD +L + N+ + G + + +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 593 AA-KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
AA +L L + P +LSGGE+QRVAIARAI+ + IL+ DE T +L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 652 DSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHRKTSTNLVRG 701
D T I++ LK ++ TT+ +A + R L RG
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVATHAKEL-----VDTTRHRVIALERG 212
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 128 bits (323), Expect = 3e-30
Identities = 93/306 (30%), Positives = 163/306 (53%), Gaps = 27/306 (8%)
Query: 381 STSLATLNFGQS---AIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFL 437
+ + A L G + A F++ M L + + N+T +++G+L Q S L
Sbjct: 1151 TATFAVLRNGNAENQAGFASTMGLLLSYTL------NITT----LLSGVLRQASKAENSL 1200
Query: 438 GSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTK 497
SV R +ID+ + T +++ N P+ S SI+F DV+ Y
Sbjct: 1201 NSVERV--GNYIDLPSEATAIIE--------NNRPVSGWPSRGSIKFEDVHLRY-RPGLP 1249
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557
+ L+F + + V +VG +G+GKS+++ L+R E G I ID ++ L LR
Sbjct: 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309
Query: 558 RHIAIVPQDPVLFHDTILYNIN-YGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGE 616
R ++I+PQ PVLF T+ +NI+ + + + + + EA + A + + I + P + +V E
Sbjct: 1310 RVLSIIPQSPVLFSGTVRFNIDPFSEHNDA--DLWEALERAHIKDVIDRNPFGLDAEVSE 1367
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
G S G++Q +++ARA+L+ + ILV DEAT+S+D T++ I +++ ++ T + IA
Sbjct: 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIA 1427
Query: 677 HRLSTI 682
HRL+TI
Sbjct: 1428 HRLNTI 1433
Score = 118 bits (298), Expect = 3e-27
Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 19/255 (7%)
Query: 427 LFQ-LSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFR 485
LF L PL L ++ +V A + +Q + L+L E I A PL SI+
Sbjct: 563 LFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERIL--AQNPPLQPGAPAISIK-- 618
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
+ FS+ K +K S++N IP G VAIVGG+G GK+++I + + +
Sbjct: 619 NGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-- 676
Query: 546 KNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
+R +A VPQ +F+ T+ NI +G +S E A + L + +
Sbjct: 677 ----------IRGSVAYVPQVSWIFNATVRENILFGSDFES-ERYWRAIDVTALQHDLDL 725
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS-LK 664
P T++GERG+ +SGG+KQRV++ARA+ N+ I +FD+ S+LD+ + + S +K
Sbjct: 726 LPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785
Query: 665 TASRNKTTICIAHRL 679
+ KT + + ++L
Sbjct: 786 DELKGKTRVLVTNQL 800
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 116 bits (293), Expect = 3e-30
Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 59/204 (28%)
Query: 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY 542
E +++F Y + N++ T+ AG+ VA+VG +GSGKST++R + +P +G I
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 543 IDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNS 602
I+ D+ L L
Sbjct: 58 -----IDGKDIAKLPLEE--------------------------------------LRRR 74
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
I Y Q LSGG++QRVA+ARA+L N +L+ DE TS LD + +L
Sbjct: 75 IG-----YVPQ-------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 663 LKT-ASRNKTTICIAHRLSTIKHL 685
L+ A +T I + H +
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELA 146
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 125 bits (316), Expect = 4e-30
Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 37/227 (16%)
Query: 482 IEFRDVNFSY-IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA-- 538
+E ++ + D +++F + G+ + IVG SGSGKST+ L
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 539 --GAIYIDGKNINDVDLDSLR----RHIAIVPQDP---------VLFHDTILYNINY-GD 582
G + +DG+++ + +R + IA++ QDP + ++ G
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 583 KSKSYEETIEAAKLADLHN--SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
++++ + +E + L + ++P+ +LSGG +QRV IA A+
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRYPH-----------QLSGGMRQRVMIAMALALKPK 174
Query: 641 ILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLG 687
+L+ DE T++LD T+ IL LK R + I H LG
Sbjct: 175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVL-----FITHDLG 216
Score = 124 bits (314), Expect = 7e-30
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 34/258 (13%)
Query: 457 LMLKEPTIKNKANALPLVLTTSNAS--IEFRDVNFSYI--------DKHTKRIFSNLNFT 506
L+ P + ++ A + R+++ Y ++ + +++F
Sbjct: 254 LLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFD 313
Query: 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN--DVDLDSLRRHIAIVP 564
+ G+++ +VG SGSGKST+ R+L P++G+I DG++++ +L LRR I +V
Sbjct: 314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVF 373
Query: 565 QDPVLF---HDTILYNI-----NYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGE 616
QDP T+ + +G S + A++A+L + P + E
Sbjct: 374 QDPYSSLNPRMTVGDILAEPLRIHGGGSGAERR----ARVAELLELVGLPPEFLDRYPHE 429
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRNKTTIC 674
LSGG++QRVAIARA+ +L+ DE S+LD + +L+ LK T +
Sbjct: 430 ----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF 485
Query: 675 IAHRLSTIKHLLGYKAHR 692
I+H L+ ++++ A R
Sbjct: 486 ISHDLAVVRYI----ADR 499
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 119 bits (299), Expect = 5e-30
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 4/202 (1%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I+ D+ Y + + K + ++ I G+ V I G +GSGKS++ +R + G I
Sbjct: 20 IKIHDLCVRY-ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETI-EAAKLADLH 600
IDG +I+ + L +LR ++I+ QDP+LF +I +N++ + K ++ + EA ++A L
Sbjct: 79 VIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD--PECKCTDDRLWEALEIAQLK 136
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
N + P + V E G S G++Q +ARA ++ + IL+ DEAT+S+D TEN +
Sbjct: 137 NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 661 SSLKTASRNKTTICIAHRLSTI 682
+ TA ++T + IAHR+STI
Sbjct: 197 KVVMTAFADRTVVTIAHRVSTI 218
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 116 bits (293), Expect = 6e-30
Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 45/205 (21%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE R+++ Y K +++ T+ G+ ++G +G+GK+T+I+++ +P++G I
Sbjct: 1 IEVRNLSKRY---GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
+ GK+I + + ++R I +P++P L+ + + E
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYEN------------LTVREN----------- 93
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
LKLSGG KQR+A+A+A+L + +L+ DE TS LD +
Sbjct: 94 -----------------LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136
Query: 662 SLKTASRNKTTICIA-HRLSTIKHL 685
L+ + TI ++ H L + L
Sbjct: 137 LLRELKKEGKTILLSSHILEEAERL 161
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 122 bits (307), Expect = 8e-30
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 24/191 (12%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI---NDVDLDSLRR 558
+ + + G+ I+G SGSGKST++RLL R EP G I +DGK+I + +L LRR
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105
Query: 559 H-IAIVPQDPVLF-HDTILYNINYG------DKSKSYEETIEAAKLADLHNSIIKWPNHY 610
I++V Q L H T+L N+ +G K++ E +EA +L L + + Y
Sbjct: 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE----GYADKY 161
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASR 668
+ LSGG +QRV +ARA+ + IL+ DEA S+LD + + L A
Sbjct: 162 PNE-------LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 669 NKTTICIAHRL 679
KT + I H L
Sbjct: 215 KKTIVFITHDL 225
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 118 bits (297), Expect = 1e-29
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 37/225 (16%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
IE ++ SY + + +++ ++ G+ A++G +G+GKST+++ + +P+
Sbjct: 1 MMPMIEVENLTVSY---GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 538 AGAIYIDGKNINDVDLDSLRRHIAIVPQD-------PVLFHDTIL----YNINYGDKSKS 586
+G I I GK + R I VPQ P+ D +L + +
Sbjct: 58 SGEIKIFGKPVRKRR---KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK 114
Query: 587 Y-----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641
+E +E + DL + Q+GE LSGG+KQRV +ARA+ +N +
Sbjct: 115 KDKEKVDEALERVGMEDLRDR----------QIGE----LSGGQKQRVLLARALAQNPDL 160
Query: 642 LVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIKHL 685
L+ DE + +D + I LK KT + + H L +
Sbjct: 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY 205
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 126 bits (318), Expect = 2e-29
Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 6/207 (2%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
S+ SI+F DV Y + L+F I + V IVG +G+GKS+++ L+R E
Sbjct: 1234 SSGSIKFEDVVLRY-RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292
Query: 538 AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYE--ETIEAAK 595
G I IDG +I+ L LR+ + I+PQ PVLF T+ +N++ ++ + E++E A
Sbjct: 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAH 1352
Query: 596 LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
L D+ I + + +V E G S G++Q +++ARA+L+ + ILV DEAT+++D T
Sbjct: 1353 LKDV---IRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
Query: 656 ENNILSSLKTASRNKTTICIAHRLSTI 682
+ I +++ ++ T + IAHRL+TI
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTI 1436
Score = 112 bits (281), Expect = 4e-25
Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 27/265 (10%)
Query: 427 LFQ-LSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFR 485
LF L PL L ++ + A + ++ + L+L E + L +I +
Sbjct: 563 LFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVL----LPNPPLEPGLPAISIK 618
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
+ FS+ K + SN+N +P G VAIVG +G GK+++I + P + A +
Sbjct: 619 NGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-- 676
Query: 546 KNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG---DKSKSYEETIEAAKLA-DLHN 601
+R +A VPQ +F+ T+ NI +G D + YE I+ L DL
Sbjct: 677 ----------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPER-YERAIDVTALQHDL-- 723
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
++ P T++GERG+ +SGG+KQRV++ARA+ N+ + +FD+ S+LD+ +
Sbjct: 724 DLL--PGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781
Query: 662 S-LKTASRNKTTICIAHRLSTIKHL 685
+K R KT + + ++L + +
Sbjct: 782 KCIKDELRGKTRVLVTNQLHFLSQV 806
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 116 bits (293), Expect = 3e-29
Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 16/206 (7%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---- 537
IE ++N Y +K + N+N IP + A++G SG GKST++R L R +
Sbjct: 2 IEIENLNLFYGEKEALK---NINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 538 -AGAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAA 594
G + DG++I D +D+ LRR + +V Q P F +I NI YG + ++ E
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 595 KLADLHNSIIK---WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
++ + S+ K W + + ++ + L LSGG++QR+ IARA+ +L+ DE TS+L
Sbjct: 119 EIVE--ESLKKAALW-DEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 652 DSITENNILSSLKTASRNKTTICIAH 677
D I I ++ + T + + H
Sbjct: 176 DPIATGKIEELIQELKKKYTIVIVTH 201
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 116 bits (293), Expect = 3e-29
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 37/224 (16%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE +++ +Y + K+ +++ +I G+ VA++G SG+GKST++R L EP +G++
Sbjct: 1 IEVENLSKTY--PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 542 YIDGKNINDV---DLDSLRRHIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLA 597
IDG +IN + L LRR I ++ Q L ++L N+ G +L
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG-------------RLG 105
Query: 598 DLH--NSIIKW--PNHYE------TQVG------ERGLKLSGGEKQRVAIARAILKNTPI 641
S+ + +VG +R +LSGG++QRVAIARA+++ +
Sbjct: 106 RRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKL 165
Query: 642 LVFDEATSSLDSITENNILSSLK--TASRNKTTICIAHRLSTIK 683
++ DE +SLD + ++ LK T I H++ +
Sbjct: 166 ILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAR 209
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 114 bits (288), Expect = 9e-29
Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560
N++ + G I+G +GSGKS ++ + F +P++G I ++GK+I + L +R I
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDI 73
Query: 561 AIVPQDPVLF-HDTILYNINYG------DKSKSYEETIEAAKLADLHNSIIKWPNHYETQ 613
+ VPQ+ LF H T+ NI YG DK + + +E A++ + + + + P
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP------ 127
Query: 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK--T 671
LSGGE+QRVAIARA++ N IL+ DE S+LD T+ + LK + T
Sbjct: 128 -----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 672 TICIAHRLSTIKHL 685
+ + H L
Sbjct: 183 VLHVTHDFEEAWAL 196
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 113 bits (286), Expect = 4e-28
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 33/224 (14%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
IE ++++ +Y H + ++N I G+ VAI+G SG+GKST++R L +P +G
Sbjct: 2 MMIEVKNLSKTYPGGH--QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG 59
Query: 540 AIYIDGKNI---NDVDLDSLRRHIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAK 595
I +G I +L LRR I ++ Q L ++L N+ G Y T
Sbjct: 60 EILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG--RLGYTSTWR--- 114
Query: 596 LADLHNSIIKWPNHYE--------TQVG------ERGLKLSGGEKQRVAIARAILKNTPI 641
S+ + + +VG +R LSGG++QRVAIARA+++ I
Sbjct: 115 ------SLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKI 168
Query: 642 LVFDEATSSLDSITENNILSSLKTASRN--KTTICIAHRLSTIK 683
++ DE +SLD + ++ LK ++ T I H++ K
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAK 212
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 114 bits (286), Expect = 4e-28
Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 14/210 (6%)
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
N+ I F++V+F Y +++F IP G+ +IVG +GSGKSTI +L+ +
Sbjct: 3 DKNSIIVFKNVSFQY-QSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV 61
Query: 537 NAGAIYIDGKNINDVDLDSLRRHIAIVPQDP--VLFHDTILYNINYG--DKSKSYEETIE 592
+G I+ + + I D + + LR+HI IV Q+P + Y++ +G + + Y+E
Sbjct: 62 KSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR 121
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
A +++ + YE LSGG+KQRVAIA + N +++ DEATS LD
Sbjct: 122 RVSEALKQVDMLERAD-YEPN------ALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 653 SITENNILSSLKTASRNK--TTICIAHRLS 680
N+L ++ T I I H LS
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLS 204
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 112 bits (282), Expect = 1e-27
Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 25/210 (11%)
Query: 472 PLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY 531
++ T+ + I+ R++NF Y H + N+N I + A +G SG GKST++R
Sbjct: 4 MSMVATAPSKIQVRNLNFYYGKFHALK---NINLDIAKNQVTAFIGPSGCGKSTLLRTFN 60
Query: 532 RFFE--PN---AGAIYIDGKNI--NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK- 583
R +E P G I +DG+NI D+ LR + +V Q P F +I NI +G +
Sbjct: 61 RMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRL 120
Query: 584 ----SKS-YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638
S++ +E +E A L + + W N + ++ + G LSGG++QR+ IAR I
Sbjct: 121 FEKLSRAEMDERVEWA----LTKAAL-W-NEVKDKLHQSGYSLSGGQQQRLCIARGIAIR 174
Query: 639 TPILVFDEATSSLDSITENNI---LSSLKT 665
+L+ DE S+LD I+ I ++ LK
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITELKQ 204
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 110 bits (278), Expect = 1e-27
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 19/196 (9%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
+++FSY K I +L+ + AG+ +A+ G +G+GK+T+ ++L + ++G+I ++G
Sbjct: 4 NISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 546 KNINDVDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSI 603
K I + R+ I V QD LF D++ + G K L DL
Sbjct: 62 KPIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 604 IKWPNHYETQVGERG-LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
+K ER L LSGG+KQR+AIA A+L +L+FDE TS LD +
Sbjct: 119 LK----------ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
Query: 663 LKT-ASRNKTTICIAH 677
++ A++ K I I H
Sbjct: 169 IRELAAQGKAVIVITH 184
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 110 bits (278), Expect = 1e-27
Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 41/220 (18%)
Query: 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY 542
E D+ SY H + +++F + G+ +AIVG +G+GKST+++ + +P +G+I
Sbjct: 1 EVEDLTVSY-GGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 543 IDGKNINDVDLDSLRRHIAIVPQD-------PVLFHDTILYNINYGDK------SKSYEE 589
+ GK + R+ I VPQ P+ D +L + YG K SK+ +
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGL-YGHKGLFRRLSKADKA 111
Query: 590 TIEAA----KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645
++ A L++L + Q+GE LSGG++QRV +ARA++++ +L+ D
Sbjct: 112 KVDEALERVGLSELADR----------QIGE----LSGGQQQRVLLARALVQDPDLLLLD 157
Query: 646 EATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIKH 684
E + +D T+ +I L+ T + + H L +
Sbjct: 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 109 bits (275), Expect = 3e-27
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----VDLDSLR 557
++F + I G SG+GKST++R + +P+ G I ++G + D ++L +
Sbjct: 16 KIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 558 RHIAIVPQDPVLF-HDTILYNINYGDKSKS-YEETIEAAKLADLHNSIIKWPNHYETQVG 615
R I +V Q LF H + N+ +G K K E+ I +L DL +
Sbjct: 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL---------DHLL 125
Query: 616 ERG-LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT--ASRNKTT 672
R +LSGGEKQRVA+ARA+ +L+ DE S+LD +L LK + N
Sbjct: 126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPV 185
Query: 673 ICIAHRLSTIKHL 685
I + H LS ++L
Sbjct: 186 IFVTHDLSEAEYL 198
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 109 bits (274), Expect = 4e-27
Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 25/205 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+E +V + + +LN I G+ V ++G SG GK+T +R++ EP +G I
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSY-EETI-----EAA 594
YI G+++ D+ R IA+V Q+ L+ H T+ NI +G K + ++ I E A
Sbjct: 58 YIGGRDVTDL--PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 595 KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654
+L + + + + Q LSGG++QRVA+ RAI++ + + DE S+LD+
Sbjct: 116 ELLQIEHLL----DRKPKQ-------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 655 TENNILSSLKTASRN--KTTICIAH 677
+ + LK + TTI + H
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTH 189
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 109 bits (275), Expect = 1e-26
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 42/194 (21%)
Query: 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL 553
K + ++F+I G+++ +VG SG GKST+ RL+ EP +G I +GK+I +
Sbjct: 23 KRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSK 82
Query: 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQ 613
+ R + E +E L
Sbjct: 83 EERRERV---------------------------LELLEKVGLP---------EEFLYRY 106
Query: 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRNKT 671
E LSGG++QR+ IARA+ N ++V DE S+LD + IL+ LK T
Sbjct: 107 PHE----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLT 162
Query: 672 TICIAHRLSTIKHL 685
+ I+H LS ++++
Sbjct: 163 YLFISHDLSVVRYI 176
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 111 bits (279), Expect = 2e-26
Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----VDLDSLRR 558
+FT+P AI G SGSGK+T+IRL+ P+ G I ++G+ + D + L +R
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 559 HIAIVPQDPVLF-HDTILYNINYG-DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGE 616
I V Q+ LF H ++ N+ YG +++ E I ++ +L +G
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG--------IGHLLGR 127
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRNKTTIC 674
+LSGGEKQRVAI RA+L + +L+ DE ++LD + IL L+ A +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187
Query: 675 IAHRLSTIKHL 685
++H L + L
Sbjct: 188 VSHSLQEVLRL 198
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 103 bits (258), Expect = 4e-26
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 524 STIIRLLYRFFEPNAGAIYIDGKNINDV-DLDSLRRHIAIVPQDPVLF-HDTILYNINYG 581
ST+++L+ +P +G I +DG++ + LR+ I +V QDP LF T+ N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 582 DKSKSYEETIEAA-KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
+ K + E A + L + + + E LSGG+KQRVAIARA+LK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 641 ILVFDEATS 649
+L+ DE T+
Sbjct: 111 LLLLDEPTA 119
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 106 bits (267), Expect = 8e-26
Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 45/237 (18%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+E +++ Y + N+N I G+ VAI+G SG+GKST++R + R EP++G+I
Sbjct: 2 LEVENLSKVYPNGKQ--ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 542 YIDGKNINDV---DLDSLRRHIAIVPQDPVLFHD-TILYNINYG---------------- 581
++G +I + L LRR I ++ Q L T+L N+ +G
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 582 --DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639
DK ++ +E LAD R +LSGG++QRVAIARA+ +
Sbjct: 120 EEDKERALS-ALERVGLADKAYQ--------------RADQLSGGQQQRVAIARALAQQP 164
Query: 640 PILVFDEATSSLDSITENNILSSLKTASRNK--TTICIAHRLSTIK----HLLGYKA 690
+++ DE +SLD T ++ LK ++ T I H++ K ++G KA
Sbjct: 165 DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 107 bits (270), Expect = 1e-25
Identities = 67/209 (32%), Positives = 108/209 (51%), Gaps = 19/209 (9%)
Query: 481 SIEFRDVNFSYIDK--HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
SI+ ++ Y++ K+ N+N I G+ V ++G +GSGKST+I+ L +P +
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 539 GAIYIDGKNIND--VDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEETIEAA 594
G I IDG +I D V L +R+ + +V Q P LF +TI +I +G + E
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEE---- 117
Query: 595 KLADLHNSIIKWPN----HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
++ N + + N YE + +LSGG+K+RVAIA + IL+ DE T+
Sbjct: 118 ---EIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
Query: 651 LDSITENNILSSLKTASR--NKTTICIAH 677
LD + IL+ +K + N T I ++H
Sbjct: 175 LDPKGRDEILNKIKELHKEYNMTIILVSH 203
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 106 bits (267), Expect = 1e-25
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 37/242 (15%)
Query: 451 MQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAG 510
M + ++ P + L L+ ++E R++N Y DK +++ IP
Sbjct: 1 MISHGITLMALPLLDV------LNLSDEQTALEVRNLNLFYGDKQA---LFDISMRIPKN 51
Query: 511 KSVAIVGGSGSGKSTIIRLLYRFFEPN--------AGAIYIDGKNIND--VDLDSLRRHI 560
+ A +G SG GKST++R R N G I +DG+NI D VD+ LRR +
Sbjct: 52 RVTAFIGPSGCGKSTLLRCFNRM---NDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRV 108
Query: 561 AIVPQDPVLFHDTILYNINYG------DKSKSYEETIEAA-KLADLHNSIIKWPNHYETQ 613
+V Q P F +I N+ YG + + +E +E + + A L W + + +
Sbjct: 109 GMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAAL------W-DEVKDR 161
Query: 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTI 673
+ E LSGG++QR+ IARAI +L+ DE TS+LD I+ I L T ++K TI
Sbjct: 162 LHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI-EELITELKSKYTI 220
Query: 674 CI 675
I
Sbjct: 221 VI 222
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 104 bits (263), Expect = 2e-25
Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 25/182 (13%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
+L+ + G+ ++G +G+GK+T +++L P +G YI+G +I D + R+ +
Sbjct: 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSLG 78
Query: 562 IVPQDPVLFHD----------TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
PQ LF + L + + + E + L D N +
Sbjct: 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR------ 132
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKT 671
LSGG K+++++A A++ +L+ DE TS LD + I + + ++
Sbjct: 133 --------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRS 184
Query: 672 TI 673
I
Sbjct: 185 II 186
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 105 bits (264), Expect = 2e-25
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 23/178 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE +V+ Y ++ I G+ ++G SG GK+T++RL+ F P +G I
Sbjct: 1 IELENVSKFYGGFV---ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG------DKSKSYEETIEAA 594
+DGK+I +L +R + V Q+ LF H T+ NI +G K++ E EA
Sbjct: 58 LLDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 595 KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
L L + P+ +LSGG++QRVAIARA++ +L+ DE +LD
Sbjct: 116 DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 104 bits (261), Expect = 3e-25
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 40/213 (18%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
++ ++ Y K R ++ T+ G ++G +G+GK+T++R+L P++G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDP----------VLFHDTILYNINYGDKSKSYEETI 591
IDG+++ LRR I +PQ+ L + L I + +E +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
E L D + ++G LSGG ++RV IA+A++ + IL+ DE T+ L
Sbjct: 116 ELVNLGD----------RAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161
Query: 652 D---SITENNILSSLKTASRNKTTICIAHRLST 681
D I N+LS L ++ I LST
Sbjct: 162 DPEERIRFRNLLSEL---GEDRIVI-----LST 186
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 105 bits (264), Expect = 4e-25
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 28/213 (13%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---- 537
IE RD+N Y D+ +++ IP + A++G SG GKST +R + R N
Sbjct: 40 IEARDLNVFYGDEQA---LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM---NDLID 93
Query: 538 ----AGAIYIDGKNINDVDLD--SLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETI 591
G + GKN+ D D+D +LRR I +V Q P F +I N+ YG K + Y+ I
Sbjct: 94 AARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDI 153
Query: 592 -----EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
E+ + A L W + + Q+ GL LSGG++QR+ IARAI + +++ DE
Sbjct: 154 DERVEESLRRAAL------W-DEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE 206
Query: 647 ATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
S+LD + + I ++ + T + + H +
Sbjct: 207 PASALDPVATSKIEDLIEELAEEYTVVIVTHNM 239
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 106 bits (268), Expect = 7e-25
Identities = 60/178 (33%), Positives = 98/178 (55%), Gaps = 23/178 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+E R ++ S+ K + SNL+ TI G+ + ++G SG GK+T++RL+ F P++G I
Sbjct: 15 VELRGISKSF---DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-SKSYEETI-----EAA 594
+DG++I V + RH+ V Q LF H T+ N+ +G + K+ I EA
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 595 KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
++ L E + +LSGG++QRVAIARA++ +L+ DE+ S+LD
Sbjct: 130 RMVQL-----------EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 106 bits (266), Expect = 1e-24
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 44/227 (19%)
Query: 482 IEFRDVNFSYIDKHTKRI--FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
IE ++++ + + + I +N++ IPAG+ ++G SG+GKST+IR + P +G
Sbjct: 2 IELKNISKVF-PQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60
Query: 540 AIYIDGKNI---NDVDLDSLRRHIAIVPQDPVLFH----------DTI-----LYNINYG 581
+ +DG+++ ++ +L RR I ++ Q H D + L
Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQ-----HFNLLSSRTVFDNVALPLELAGTPKA 115
Query: 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP- 640
+ E +E L+D + Y Q LSGG+KQRVAIARA L + P
Sbjct: 116 EIKARVTELLELVGLSDKADR-------YPAQ-------LSGGQKQRVAIARA-LASNPK 160
Query: 641 ILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHL 685
+L+ DEATS+LD T +IL LK +R T + I H + +K +
Sbjct: 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRI 207
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 102 bits (256), Expect = 2e-24
Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 30/226 (13%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PN-- 537
IE + + Y +K + N+ I + AI+G SG GK+T++R + R + P
Sbjct: 4 IEIENFSAYYGEK---KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 538 -AGAIYIDGKNI--NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-------DKSK-- 585
G IY G++I +D+ R+ + +V Q P F +I N+ +G K K
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 586 -SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644
EE+++ A L D ++++ + G +LSGG++QR+ IARA+ +++
Sbjct: 121 RIVEESLKKAALWD----------EVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILL 170
Query: 645 DEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690
DE TS+LD I I L+ S N T + + H + + Y A
Sbjct: 171 DEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIA 216
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 109 bits (274), Expect = 3e-24
Identities = 66/203 (32%), Positives = 108/203 (53%), Gaps = 3/203 (1%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
S+ F V Y + + ++F I + V IVG +GSGKST++ R E G
Sbjct: 1308 SLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGE 1366
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
I ++G+ I L LRR +++PQDPVLF T+ N++ ++ S E A +L L
Sbjct: 1367 IRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASS-AEVWAALELVGLR 1425
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK-NTPILVFDEATSSLDSITENNI 659
+ +++V E G S G++Q + +ARA+LK + ++ DEAT+++D + I
Sbjct: 1426 ERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI 1485
Query: 660 LSSLKTASRNKTTICIAHRLSTI 682
+++ +A T I IAHRL T+
Sbjct: 1486 QATVMSAFSAYTVITIAHRLHTV 1508
Score = 88.3 bits (219), Expect = 9e-18
Identities = 60/201 (29%), Positives = 104/201 (51%), Gaps = 39/201 (19%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K + +++ ++P GK ++G +GSGKST+++ L FE + G ++ +
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------ 720
Query: 557 RRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLAD------LHNSIIKWPNHY 610
R IA VPQ + + T+ NI + D EE +AA+LAD L + +
Sbjct: 721 -RSIAYVPQQAWIMNATVRGNILFFD-----EE--DAARLADAVRVSQLEADLAQLGGGL 772
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS-----ITENNILSSLKT 665
ET++GE+G+ LSGG+K RV++ARA+ N + + D+ S+LD+ + E L +L
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-- 830
Query: 666 ASRNKTTICIAHRLSTIKHLL 686
KT + H++ H++
Sbjct: 831 --AGKTRVLATHQV----HVV 845
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 106 bits (268), Expect = 4e-24
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 38/223 (17%)
Query: 472 PLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY 531
P +L S F V + ++ T+ G+ A++G +G+GKST++++L
Sbjct: 6 PPLLELRGISKSFGGV----------KALDGVSLTVRPGEVHALLGENGAGKSTLMKILS 55
Query: 532 RFFEPNAGAIYIDGKNINDVD-LDSLRRHIAIVPQDPVLFHD-TILYNINYG-------- 581
+ P++G I IDGK + D+L IA V Q+ L + ++ NI G
Sbjct: 56 GVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFG 115
Query: 582 --DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639
D+ E LA L I P +T VG+ LS ++Q V IARA+ +
Sbjct: 116 LIDRKAMRRRAREL--LARLGLDID--P---DTLVGD----LSIAQRQMVEIARALSFDA 164
Query: 640 PILVFDEATSSLDSI-TEN--NILSSLKTASRNKTTICIAHRL 679
+L+ DE T++L TE +++ LK ++ I I+HRL
Sbjct: 165 RVLILDEPTAALTVKETERLFDLIRRLK--AQGVAIIYISHRL 205
Score = 61.8 bits (151), Expect = 8e-10
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LD 554
+++FT+ AG+ + I G G+G++ + R L+ ++G I +DGK + D
Sbjct: 271 GGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330
Query: 555 SLRRHIAIVPQDP-----VLFHDTILYNINYGD-----KSKSYEETIEAAKLADLHNSI- 603
+++ IA VP+D VL I NI + + E A +
Sbjct: 331 AIKAGIAYVPEDRKSEGLVLDMS-IAENITLASLRRFSRRGLIDRRKERALAERYIRRLR 389
Query: 604 IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
IK P+ E +G LSGG +Q+V +AR + + +L+ DE T +D
Sbjct: 390 IKTPSP-EQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGID 433
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 100 bits (251), Expect = 8e-24
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 37/218 (16%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+ DV FSY H F + T+PAG+ VAI+G SG+GKST++ L+ F P +G I
Sbjct: 2 LALDDVRFSY--GHLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-----SKSYEETIEAAK 595
I+G + R ++++ Q+ LF H T+ NI G + E +EAA
Sbjct: 57 LINGVDH--TASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 596 LADLHNSIIKWPNHYETQVGERGL------KLSGGEKQRVAIARAILKNTPILVFDEATS 649
QVG G +LSGG++QRVA+AR +++ PIL+ DE S
Sbjct: 115 ----------------AQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS 158
Query: 650 SLDSITENNILSSLKTASRNK--TTICIAHRLSTIKHL 685
+LD +L+ + + T + + H +
Sbjct: 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARI 196
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 100 bits (249), Expect = 2e-23
Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 30/215 (13%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PNA- 538
I+ RDVNF Y D H ++ I VA +G SG GKST +RL R + P
Sbjct: 4 IDARDVNFWYGDFHA---LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 539 --GAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK----------S 584
G I IDG+NI D V +D LR+++ +V Q P F +I N+ YG +
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 585 KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644
+ EET++ A L D + ++ E LSGG++QR+ IARA+ + +L+
Sbjct: 121 QRVEETLKGAALWD----------EVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLM 170
Query: 645 DEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
DE S+LD I+ + + ++ T + + H +
Sbjct: 171 DEPASALDPISTAKVEELIHELKKDYTIVIVTHNM 205
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 98.8 bits (246), Expect = 3e-23
Identities = 46/166 (27%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS 555
+I +N++ ++ AG+ +AI G SG GKST+++++ P +G + +G++++ + ++
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 556 LRRHIAIVPQDPVLFHDTILYNIN--YGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQ 613
R+ ++ Q P LF DT+ N+ + +++ + LA ++
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP--------DSI 126
Query: 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+ + +LSGGEKQR+A+ R + IL+ DE TS+LD + NI
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 99.3 bits (247), Expect = 4e-23
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 24/226 (10%)
Query: 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--P 536
+E +++N Y +K +++N I K A++G SG GKST +R L R +
Sbjct: 2 KIKMESKNLNLWYGEKQA---LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLIS 58
Query: 537 NA---GAIYIDGKNI--NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK------SK 585
N G + +DGKNI DVD+ LR+ + +V Q P F +I N+ YG + K
Sbjct: 59 NVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKK 118
Query: 586 SYEETIE-AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644
++ +E A K A L + + + + + LKLSGG++QR+ IAR I +++
Sbjct: 119 ELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILM 171
Query: 645 DEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690
DE TS+LD I+ I + + T + + H + + Y A
Sbjct: 172 DEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTA 217
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 98.9 bits (246), Expect = 4e-23
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----P 536
IE ++N +Y D I N+N IP A++G SG GKST IR L R +
Sbjct: 4 IEVENLN-TYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 537 NAGAIYIDGKNI--NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSY------- 587
+ G IY+DG +I VD+ LR+ + +V Q P F +I N+ YG +
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 588 ---EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644
EE+++AA L D + ++ + L LSGG++QR+ IAR I + +++
Sbjct: 121 ERVEESLKAAALWD----------EVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILM 170
Query: 645 DEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690
DE S+LD I+ I + + T + + H + + Y +
Sbjct: 171 DEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTS 216
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 99.2 bits (247), Expect = 7e-23
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 5/202 (2%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+ +D+ Y + + N++F+I G+ V ++G +GSGKST++ R G I
Sbjct: 3 MTVKDLTAKYTEGGNA-VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDI 60
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNIN-YGDKSKSYEETIEAAKLADLH 600
IDG + N V L R+ ++PQ +F T N++ YG S EE + A+ L
Sbjct: 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSD--EEIWKVAEEVGLK 118
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ I ++P + + + G LS G KQ + +AR++L IL+ DE ++ LD IT I
Sbjct: 119 SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIR 178
Query: 661 SSLKTASRNKTTICIAHRLSTI 682
+LK A + T I HR+ +
Sbjct: 179 KTLKQAFADCTVILSEHRIEAM 200
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 97.0 bits (242), Expect = 9e-23
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 29/220 (13%)
Query: 482 IEFRDVNFSYID-KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
++ ++ Y + K R+ ++ +I G+ VAIVG SGSGKST++ LL P +G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 541 IYIDGKNIN---DVDLDSLR-RHIAIVPQDPVLFHD-----TILYNINY----GDKSKSY 587
+ +G++++ + LR + + + Q FH T L N+ G KS
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQ----FHHLLPDFTALENVAMPLLIGKKSVKE 117
Query: 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
+ L + NH ++ LSGGE+QRVAIARA++ +++ DE
Sbjct: 118 AKERAYEMLEKVGLE--HRINHRPSE-------LSGGERQRVAIARALVNQPSLVLADEP 168
Query: 648 TSSLDSITENNILSSLKTASRNKTT--ICIAHRLSTIKHL 685
T +LD+ I + +R T + + H L K L
Sbjct: 169 TGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL 208
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 96.4 bits (240), Expect = 1e-22
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+ + FSY F T G+ AIVG SGSGKST++ L+ F P +G +
Sbjct: 1 VRLDKIRFSY--GEQPMHFD---LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG--DKSKSYEETIEAAKLAD 598
I+G ++ R ++++ Q+ LF H T+ N+ G K E +A ++A
Sbjct: 56 LINGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVA- 112
Query: 599 LHNSIIKWPNHYETQVGERGL------KLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
+VG GL +LSGGE+QRVA+AR ++++ P+L+ DE ++LD
Sbjct: 113 ------------LARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
Query: 653 SITENNILSSLKT--ASRNKTTICIAHRLSTIKHL 685
+L + A T + + H+ K L
Sbjct: 161 PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL 195
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 96.5 bits (240), Expect = 2e-22
Identities = 59/202 (29%), Positives = 108/202 (53%), Gaps = 25/202 (12%)
Query: 488 NFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKN 547
Y +H F + + G+ VAI+G SG+GKST++ L+ F EP +G+I ++ ++
Sbjct: 5 KVRYEYEHLPMEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS 61
Query: 548 INDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK------SKSYEETIEAAKLADLH 600
L +R ++++ Q+ LF H T+ NI G ++ E+ ++AA+ +
Sbjct: 62 H--TGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA 119
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ + + P +LSGG++QRVA+AR +++ PIL+ DE S+LD + +L
Sbjct: 120 DYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168
Query: 661 SSLKT--ASRNKTTICIAHRLS 680
+ +K + R +T + + H LS
Sbjct: 169 ALVKQLCSERQRTLLMVTHHLS 190
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 98.6 bits (246), Expect = 4e-22
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 20/191 (10%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----VDLDSLRR 558
NFT+PA A+ G SGSGK+++I ++ P+ G I ++G+ + D + L +R
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 559 HIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
I V QD LF H T+ N+ YG + + L + + + ++P
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG--------- 127
Query: 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICI-- 675
LSGGEKQRVAI RA+L +L+ DE +SLD + IL L+ R++ I I
Sbjct: 128 --TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL-RDEINIPILY 184
Query: 676 -AHRLSTIKHL 685
+H L + L
Sbjct: 185 VSHSLDEVLRL 195
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 95.9 bits (239), Expect = 4e-22
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 40/218 (18%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PNA- 538
I +D++ Y D + +N I + A++G SG GKST +R L R + P+
Sbjct: 4 ISVKDLDLFYGDFQALK---KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK 60
Query: 539 --GAIYIDGKNI--NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-------DKSK-- 585
G + +DG++I +D+D++ LR+ + +V Q P F +I N+ YG DK K
Sbjct: 61 IEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLD 120
Query: 586 -SYEETIEAAKLAD-----LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639
E++++ A L D L S L LSGG++QR+ IARA+
Sbjct: 121 EIVEKSLKGAALWDEVKDRLKKS---------------ALGLSGGQQQRLCIARALAVEP 165
Query: 640 PILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
+L+ DE TS+LD I+ I ++ ++ T + + H
Sbjct: 166 EVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 98.0 bits (244), Expect = 4e-22
Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 26/218 (11%)
Query: 482 IEFRDVNFSYIDKHTKRI--FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
I+ ++ + TK I +N++ +PAG+ ++G SG+GKST+IR + P +G
Sbjct: 2 IKLSNIT-KVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60
Query: 540 AIYIDGKNI---NDVDLDSLRRHIAIVPQD-PVLFHDTILYNI------NYGDKSKSYEE 589
++ +DG+++ ++ +L RR I ++ Q +L T+ N+ + K + +
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK 120
Query: 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
E L L + +P++ LSGG+KQRVAIARA+ N +L+ DEATS
Sbjct: 121 VTELLALVGLGDKHDSYPSN-----------LSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 650 SLDSITENNILSSLKTASR--NKTTICIAHRLSTIKHL 685
+LD T +IL LK +R T + I H + +K +
Sbjct: 170 ALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRI 207
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 96.1 bits (239), Expect = 4e-22
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 22/217 (10%)
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE- 535
T + +++N Y +KH ++ +IP + A++G SG GKST++R R +
Sbjct: 2 TMEIILSTKNLNLWYGEKHA---LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL 58
Query: 536 -PNA---GAIYIDGKNINDVDLD--SLRRHIAIVPQDPVLFHDTILYNINYGDK------ 583
P G I +G+NI D D +LRR I +V Q P F +I N+ YG +
Sbjct: 59 IPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILV 643
K+ + +E + L + + W + + ++ + L LSGG++QR+ IAR + N +++
Sbjct: 119 KKTLDTIVEKS----LKGAAL-W-DEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVIL 172
Query: 644 FDEATSSLDSITENNILSSLKTASRNKTTICIAHRLS 680
DE S+LD I I ++ + T I + H +
Sbjct: 173 MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 95.6 bits (238), Expect = 6e-22
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 30/220 (13%)
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE- 535
S +E R ++F Y D +++ + A++G SG GKST +R L R +
Sbjct: 2 ASPPKMEARGLSFFYGDFQA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL 58
Query: 536 -PNA---GAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYG-----DKS 584
P A G I +DG+NI D VD+ LRR + +V Q P F +I N+ YG K
Sbjct: 59 IPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD 118
Query: 585 KSY-----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639
K+Y E ++ A L D + ++ E L LSGG++QR+ IARA+
Sbjct: 119 KAYLAERVERSLRHAALWD----------EVKDRLHESALGLSGGQQQRLCIARALAVEP 168
Query: 640 PILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
+L+ DE S+LD I I + T I + H +
Sbjct: 169 EVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNM 208
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 95.5 bits (237), Expect = 6e-22
Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 18/205 (8%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA---GAIYIDGKNINDVDL 553
K+ ++N I K A++G SG GKST +R R + A G + I+GK++ + D+
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 554 DSLRRHIAIVPQDPVLFHDTILYNINYGDK------SKSYEETI--EAAKLADLHNSIIK 605
+LR+++ +V Q P +F +I NI+Y K +K EE + + + L +
Sbjct: 75 VALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-- 132
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665
+ ++ + L LSGG++QR+ IARA+ +L+ DE TS+LD I+ I LK
Sbjct: 133 -----KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE 187
Query: 666 ASRNKTTICIAHRLSTIKHLLGYKA 690
S N + I + H + K + Y A
Sbjct: 188 LSHNLSMIMVTHNMQQGKRVADYTA 212
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 94.3 bits (235), Expect = 9e-22
Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 27/196 (13%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA---GAIYIDGKNINDVD 552
RI ++++ + +G+ +AI+G SGSGK+T++ + E G I +G+
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ---PRK 75
Query: 553 LDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAK--------LADLHNSI 603
D ++ +A V QD +L T+ + Y + ++ +A + L DL
Sbjct: 76 PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL-- 133
Query: 604 IKWPNHYETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
T++G +K +SGGE++RV+IA +L + +L+ DE TS LDS T N++S+
Sbjct: 134 --------TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 663 LK-TASRNKTTICIAH 677
L A RN+ I H
Sbjct: 186 LSQLARRNRIVILTIH 201
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 95.2 bits (237), Expect = 1e-21
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 463 TIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSG 522
A T + + RDV+ Y +K +F +++ IP A +G SG G
Sbjct: 1 YEMADEKAADKKATATEIKMRARDVSVFYGEKQA--LF-DVDLDIPEKTVTAFIGPSGCG 57
Query: 523 KSTIIRLLYRFFE--PNA---GAIYIDGKNINDVDLD--SLRRHIAIVPQDPVLFHDTIL 575
KST +R L R + G I +DG++I D LD LR + +V Q P F +I
Sbjct: 58 KSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIY 117
Query: 576 YNINYGDKSKSYEETIEAAKLADLHNSIIK-------WPNHYETQVGERGLKLSGGEKQR 628
N+ YG + A A+L + W + ++ E G LSGG++QR
Sbjct: 118 ENVAYGPRIHGL-----ARSKAELDEIVETSLRKAGLW-EEVKDRLHEPGTGLSGGQQQR 171
Query: 629 VAIARAILKNTPILVFDEATSSLDSI 654
+ IARAI + +++ DE S+LD I
Sbjct: 172 LCIARAIAVSPEVILMDEPCSALDPI 197
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 95.6 bits (238), Expect = 1e-21
Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE +++ F Y + K ++++F + G+ ++I+G +GSGKST +RL+ E +G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDP--VLFHDTILYNINYG--DKSKSYEETI----EA 593
IDG + + ++ +R I +V Q+P T+ ++ +G +K +EE EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+L + + + P +LSGG+KQRVAIA A+ I++ DEATS LD
Sbjct: 125 LELVGMQDFKEREPA-----------RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 654 ITENNILSSLKT--ASRNKTTICIAHRL 679
++ ++K T I I H L
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHDL 201
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 94.8 bits (236), Expect = 1e-21
Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 29/225 (12%)
Query: 467 KANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTI 526
N VL T N ++ Y N+ IP + A +G SG GKSTI
Sbjct: 3 TLNGTETVLRTENLNV--------YYGSFLA--VKNVWLDIPKNQITAFIGPSGCGKSTI 52
Query: 527 IRLLYRFFE--PNA---GAIYIDGKNINDVDLD--SLRRHIAIVPQDPVLFHDTILYNIN 579
+R R + P G + GKN+ D+D +RR I +V Q P F +I NI
Sbjct: 53 LRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIA 112
Query: 580 YGDKSKSY----EETIEAA-KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634
YG + Y +E +E + + A L W + + ++ + GL LSGG++QR+ IARA
Sbjct: 113 YGARINGYKGDMDELVERSLRQAAL------W-DEVKDKLKQSGLSLSGGQQQRLCIARA 165
Query: 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
I +++ DE S+LD I+ I + T I + H +
Sbjct: 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 96.3 bits (240), Expect = 2e-21
Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 25/170 (14%)
Query: 496 TKR-----IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550
TKR + NLN TI G V ++G SG GK+T++RL+ +P G I+IDG+++
Sbjct: 13 TKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH 72
Query: 551 VDLDSLRRHIAIVPQDPVLF-HDTILYNINYG------DKSKSYEETIEAAKLADLHNSI 603
+ +R I +V Q LF H ++ N+ YG K + + EA +L DL
Sbjct: 73 RSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL---- 126
Query: 604 IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+ + Y Q+ SGG++QRVA+ARA++ +L+FDE S+LD+
Sbjct: 127 AGFEDRYVDQI-------SGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 99 bits (249), Expect = 2e-21
Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 17/254 (6%)
Query: 435 GFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYID- 493
G + SV R + FID+ P+ L VL N + + +D
Sbjct: 1167 GLMRSVSRVFK--FIDLPQEEP----RPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDV 1220
Query: 494 -----KHT---KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
K+T + + +L+F++ G+ V ++G +GSGKST++ L R G I IDG
Sbjct: 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDG 1279
Query: 546 KNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
+ N V L + R+ ++PQ +F T N++ ++ S EE + A+ L + I +
Sbjct: 1280 VSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW-SDEEIWKVAEEVGLKSVIEQ 1338
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665
+P+ + + + G LS G KQ + +AR+IL IL+ DE ++ LD +T I +LK
Sbjct: 1339 FPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398
Query: 666 ASRNKTTICIAHRL 679
+ N T I HR+
Sbjct: 1399 SFSNCTVILSEHRV 1412
Score = 87.7 bits (217), Expect = 2e-17
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 15/196 (7%)
Query: 489 FSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548
FS + + N++F + G+ +A+ G +GSGKS+++ ++ EP+ G I G+
Sbjct: 431 FSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-- 488
Query: 549 NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPN 608
I+ PQ + TI NI +G Y T K L I +P
Sbjct: 489 -----------ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT-SVIKACQLEEDIALFPE 536
Query: 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS-LKTAS 667
+T +GE G+ LSGG++ R+++ARA+ K+ + + D + LD +TE I S L
Sbjct: 537 KDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM 596
Query: 668 RNKTTICIAHRLSTIK 683
NKT I + +L +K
Sbjct: 597 SNKTRILVTSKLEHLK 612
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 93.2 bits (232), Expect = 4e-21
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
+++F G+ ++G +G+GK+T++R++ P++G + IDG + D +RR I
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78
Query: 562 IVPQDPVLFHDTI----------LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
++ + L+ L ++ + E + +L + +
Sbjct: 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD---------- 128
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK-TASRNK 670
+VGE S G KQ+VAIARA++ + ILV DE TS LD T +K + +
Sbjct: 129 RRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGR 184
Query: 671 TTICIAHRLSTIKHL 685
I +H + ++ L
Sbjct: 185 AVIFSSHIMQEVEAL 199
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 92.0 bits (228), Expect = 5e-21
Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 16/196 (8%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND---VDLDSL 556
SN+N IP G+ IVG G GKS+++ + + G ++ KN ++ S
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 557 RRH-IAIVPQDPVLFHDTILYNINYGD--KSKSYEETIEAAKLADLHNSIIKWPNHYETQ 613
R+ +A Q P L + T+ NI +G + Y+ +A L I P +T+
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSL---QPDIDLLPFGDQTE 133
Query: 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL-----DSITENNILSSLKTASR 668
+GERG+ LSGG++QR+ +ARA+ +NT I+ D+ S+L D + + IL L+ R
Sbjct: 134 IGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKR 193
Query: 669 NKTTICIAHRLSTIKH 684
T + + H+L + H
Sbjct: 194 --TLVLVTHKLQYLPH 207
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 92.1 bits (228), Expect = 1e-20
Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 22/211 (10%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA- 540
I+ R VNF Y H ++ N+N P + AI+G SG GKST++R L R + +GA
Sbjct: 5 IKIRGVNFFY---HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 541 ----IYIDGKNINDVDLD--SLRRHIAIVPQDPVLFHDTILYNINYGDK------SKSYE 588
+ +D +NI +LD +LR+ + +V Q P F +I N+ +G + +
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
E +E + L + + W + + + + GL LSGG++QR+ IAR + +++ DE
Sbjct: 122 EVVEKS----LRQAAL-W-DEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 649 SSLDSITENNILSSLKTASRNKTTICIAHRL 679
S+LD ++ I ++ +N T + H +
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNM 206
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 91.7 bits (228), Expect = 1e-20
Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 25/207 (12%)
Query: 482 IEFRDVNFSYIDKH--TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
IEF++V KH ++ N++ I G+ V I+G SGSGKST++R + + E +G
Sbjct: 2 IEFKNV-----SKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG 56
Query: 540 AIYIDGKNIND--VDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-----SKSYEETI 591
+ +DG +ND VD +R+ +V Q LF H T L N+ +G SK E
Sbjct: 57 DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQ 116
Query: 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
LA + + + +HY ++ LSGG++QRVAIARA+ +++FDE TS+L
Sbjct: 117 ARELLAKV--GLAERAHHYPSE-------LSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167
Query: 652 DSITENNILSSLKT-ASRNKTTICIAH 677
D + +L ++ A T + + H
Sbjct: 168 DPELRHEVLKVMQDLAEEGMTMVIVTH 194
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 91.6 bits (228), Expect = 1e-20
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 38/218 (17%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE ++V+ K +I +L++ + G+ AIVG +G+GK+T++ LL P++G +
Sbjct: 32 IELKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 542 YIDGKNINDVDLDS-LRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
+ G+ + LR+ I +V L H+ ET+ L+
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLV--SSEL-HERFRVR-----------ETVRDVVLSGFF 134
Query: 601 NSIIKWPNHYETQVGER--------GLK---------LSGGEKQRVAIARAILKNTPILV 643
SI + + G K LS GE++RV IARA++K+ +L+
Sbjct: 135 ASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLI 194
Query: 644 FDEATSSLDSITEN---NILSSLKTASRNKTTICIAHR 678
DE LD I N L L + + + H
Sbjct: 195 LDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 89.8 bits (223), Expect = 2e-20
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 21/189 (11%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI--NDVDLDS 555
+ LNF G+ +A++G +G+GKST++ L P +GA+ IDG+ + + L
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLE 65
Query: 556 LRRHIAIVPQDP--VLFHDTILYNI-----NYGDKSKSYEETI-EAAKLADLHNSIIKWP 607
R+ + +V QDP LF + ++ N G E + EA
Sbjct: 66 RRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA-------- 117
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667
+ + LSGGEK+RVAIA A+ +L+ DE T+ LD +L+ L+
Sbjct: 118 SGLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 668 RNKTTICIA 676
T+ I+
Sbjct: 175 AEGMTVVIS 183
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 90.2 bits (224), Expect = 2e-20
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 32/196 (16%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL-- 556
I + + G++VAIVG SGSGKST++ +L +P++G + + G+ ++ +D D+
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 557 --RRHIAIVPQDPVLF-HDTILYNI---------NYGDKSKSYEETIEAAKLAD-LHNSI 603
RH+ V Q L + T L N+ + D + +EA L L
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT--- 141
Query: 604 IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663
HY Q LSGGE+QRVA+ARA +L DE T +LD T + I L
Sbjct: 142 -----HYPAQ-------LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 664 --KTASRNKTTICIAH 677
R T + + H
Sbjct: 190 FALNRERGTTLVLVTH 205
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 92.4 bits (230), Expect = 3e-20
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 27/166 (16%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV-DLDSLRR 558
+++ I +G+ VA++G SG+GKST++R++ P+AG I ++G+ + DV +L R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 559 HIAIVPQDPVLF-HDTILYNINYGDKSKSY-----------EETIEAAKLADLHNSIIKW 606
+ V Q LF H T+ NI +G K + EE + +L L +
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR---- 133
Query: 607 PNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
Y Q LSGG++QRVA+ARA+ +L+ DE +LD
Sbjct: 134 ---YPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALD 169
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 90.2 bits (224), Expect = 4e-20
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 26/162 (16%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
++N +P G VA++G SGSGKST++R++ +P++G I ++G++ V R I
Sbjct: 18 DVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRKIG 75
Query: 562 IVPQDPVLF-HDTILYNINYG---------DKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
V Q LF H T+ NI +G EE +E +L L + +PN
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR---YPN--- 129
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+LSGG++QRVA+ARA+ +L+ DE +LD+
Sbjct: 130 --------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDA 163
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 89.3 bits (222), Expect = 6e-20
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 29/185 (15%)
Query: 481 SIEFRDV-----NFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535
SIE R+V +F +D +++ IP+G+ VA++G SGSGK+T++RL+
Sbjct: 2 SIEVRNVSKRFGDFVALD--------DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER 53
Query: 536 PNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAA 594
P++G I G++ DV + R++ V Q LF H T+ N+ +G + K E A
Sbjct: 54 PDSGTILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA 111
Query: 595 KLADLHNSIIK------WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
++ + ++K + Y Q LSGG++QRVA+ARA+ +L+ DE
Sbjct: 112 EIRAKVHELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPF 164
Query: 649 SSLDS 653
+LD+
Sbjct: 165 GALDA 169
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 89.5 bits (222), Expect = 7e-20
Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 29/218 (13%)
Query: 485 RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPN---AG 539
+++N Y +K+I ++N I + A +G SG GKST +R R F PN G
Sbjct: 9 KNLNLWY---GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65
Query: 540 AIYIDGKNINDVDLDS--LRRHIAIVPQDPVLFHDTILYNINYGDK-------SKSYEET 590
+ IDG ++ VD + LR + +V Q P F +I N+ YG K K +E
Sbjct: 66 ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEI 125
Query: 591 IEAAKLADLHNSIIK---WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
+E S+ W ++ + +LSGG++QR+ IARAI +L+ DE
Sbjct: 126 VE--------KSLTSVGLW-EELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176
Query: 648 TSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL 685
S+LD + N I + ++ +N T I + H + K +
Sbjct: 177 CSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKV 214
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 89.9 bits (223), Expect = 7e-20
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 12/211 (5%)
Query: 476 TTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535
+ N I ++V SY + N+ IP GK A++G SG GKST++R L R +
Sbjct: 8 ISKNIIISLQNVTISYGTFEAVK---NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMND 64
Query: 536 --PNA---GAIYIDGKNINDVDLD--SLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYE 588
G + DG ++ D +D +RR I +V Q P F +I NI +G + Y
Sbjct: 65 LIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYT 124
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
++ L + + W + + ++ E G LSGG++QR+ IAR I +++ DE
Sbjct: 125 GDMDELVERSLRKAAV-W-DECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 649 SSLDSITENNILSSLKTASRNKTTICIAHRL 679
S+LD I+ I ++ +N T + + H +
Sbjct: 183 SALDPISTLKIEETMHELKKNFTIVIVTHNM 213
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 89.8 bits (223), Expect = 7e-20
Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 40/221 (18%)
Query: 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
++ +D++ Y K ++ K A++G SGSGKST +R L R +
Sbjct: 18 EIALSTKDLHVYYGKKEA---IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTID 74
Query: 539 GA-----IYIDGKNIN--DVDLDSLRRHIAIVPQDPVLFHDTILYNINY-----GDKSKS 586
A I G +IN ++++ +R+HI +V Q P F +I NI + G K K
Sbjct: 75 IARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKK 134
Query: 587 Y-----EETIEAAKL-----ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636
E +++ A L DLH S L LSGG++QR+ IARAI
Sbjct: 135 VLDEIVETSLKQAALWDQVKDDLHKS---------------ALTLSGGQQQRLCIARAIA 179
Query: 637 KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
IL+ DE S+LD I+ + ++ +N T I + H
Sbjct: 180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTH 220
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 89.1 bits (221), Expect = 9e-20
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 29/220 (13%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA- 540
+++ Y + ++N IPA + A++G SG GKST++R L R + G
Sbjct: 4 FNIENLDLFYGENQA---LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 541 ----IYIDGKNI-NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-------DK---SK 585
+ +DG++I ++D+ LR + +V Q P F +I N+ YG DK +
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDE 120
Query: 586 SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645
E ++ A L D + ++ LSGG++QR+ IAR I +++ D
Sbjct: 121 VVERSLRGAALWD----------EVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD 170
Query: 646 EATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL 685
E TS+LD I + I ++ +N T + + H + + +
Sbjct: 171 EPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRI 210
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 90.1 bits (223), Expect = 9e-20
Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 9/203 (4%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PNA---GAIYIDGKNINDVDLDS- 555
+++ IPA K +A +G SG GKST++R R + P A G + +NI D ++S
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 556 -LRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQV 614
LRR + +V Q P F +I NI + ++ Y+ ++ L + I W + ++
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAI-W-EEVKDKL 155
Query: 615 GERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTIC 674
E+G LSGG++QR+ IARAI +L+ DE S+LD I+ + T I
Sbjct: 156 KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIM 215
Query: 675 IAHRLSTIKHLLGYKAHRKTSTN 697
+ H + + + A T +
Sbjct: 216 VTHNMQQASRVADWTAFFNTEID 238
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 89.3 bits (222), Expect = 9e-20
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 25/198 (12%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
+R+ ++ + G+ +AI+G +G+GKST+++ L P++G + ++G +N + L
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEEL 73
Query: 557 RRHIAIVPQDPVL-FHDTILYNINYGDKS-KSYEETIEAAKLADLHNSIIKWPNHYETQV 614
RH A++PQ+ L F T+ + G +S E E ++A
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA----------QALAAT 123
Query: 615 GERGL------KLSGGEKQRVAIARAILKNTP------ILVFDEATSSLDSITENNILSS 662
GL LSGGE+QRV +AR + + P L DE TS+LD +++ L
Sbjct: 124 DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183
Query: 663 LKT-ASRNKTTICIAHRL 679
+ A + + H L
Sbjct: 184 ARQLAREGGAVLAVLHDL 201
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 89.3 bits (222), Expect = 1e-19
Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 30/212 (14%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I ++F Y D +++F++ G+ VAIVG +GSGKST+ +LL P AG I
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHD------TILYNINYG--DKSKSYEETIE- 592
+ G +++ + +RR + +V Q+P D T+ ++ +G + EE +E
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNP----DNQFVGATVQDDVAFGLENIGVPREEMVER 120
Query: 593 ---AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
A + + + + + P+ LSGG+KQRVAIA + I++ DEATS
Sbjct: 121 VDQALRQVGMEDFLNREPHR-----------LSGGQKQRVAIAGVLALQPDIIILDEATS 169
Query: 650 SLDSITENNILSSLKTASRNK--TTICIAHRL 679
LD +L +++ K T + I H L
Sbjct: 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDL 201
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 88.5 bits (220), Expect = 2e-19
Identities = 47/162 (29%), Positives = 90/162 (55%), Gaps = 10/162 (6%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS 555
TKRI ++L+ ++P GK A++G +G GKST+++ R P +G +++ K I+ +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 556 LRRHIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQV 614
L R +A++PQ + T+ + YG +S ++ +L+ N+ + +T++
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYG---RSPWLSL-WGRLSAEDNARVNQAME-QTRI 128
Query: 615 GE----RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
R LSGG++QR +A + ++TP+++ DE T+ LD
Sbjct: 129 NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 88.7 bits (221), Expect = 2e-19
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 35/218 (16%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
A +E R+++ + + +++ T+ G+ VAI+G +G+GKST++R L P++G
Sbjct: 1 AMLEARNLSVRL---GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG 57
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVL-F----HDTIL-----YNINYGDKSKSYEE 589
+ ++G+ + D L R A++PQ L F + + + ++ +
Sbjct: 58 EVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAA 117
Query: 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL------KNTPILV 643
+ LA L Y LSGGE+QRV +AR + L+
Sbjct: 118 ALAQVDLAHLAGR------DYPQ--------LSGGEQQRVQLARVLAQLWEPDGPPRWLL 163
Query: 644 FDEATSSLDSITENNILSSLK--TASRNKTTICIAHRL 679
DE TS+LD ++++L + R I + H L
Sbjct: 164 LDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 88.7 bits (220), Expect = 2e-19
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 23/217 (10%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE RD+ +SY +K +N+NF P +A++G +G+GKST+ R +P +G++
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSY-EETI-----EA 593
I G+ I ++ +R+ + +V Q+P +F T+ +I +G + EET+ A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+ L + P+H LSGGEK+RVAIA I +LV DE T+ LD
Sbjct: 122 LHMLGLEELRDRVPHH-----------LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 654 ITENNILSSLKTASRN--KTTICIAHRLSTIKHLLGY 688
++ L T I H+L + + Y
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADY 207
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 88.1 bits (219), Expect = 3e-19
Identities = 58/297 (19%), Positives = 111/297 (37%), Gaps = 32/297 (10%)
Query: 141 VKVAMGLLYAVDELNTGIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRN 200
+ + G V L G D L + +S S+ + + +
Sbjct: 7 LLILAGATALVFPLLLGRFLDS----LIDGNGDERSSLISLAILLIAVGVLQGLLLQGSF 62
Query: 201 AVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLS---AMV 257
+ + QR +++ + + + L ++F G L+ + I L +
Sbjct: 63 YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLF 122
Query: 258 FNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENE 317
F + T+ ++ +K +L+ ++ + + + + + + KA +
Sbjct: 123 FQSLATVVGGFIVMFYYGWK----LTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178
Query: 318 AGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAA 377
AG+ A +SL TVK F E++E +RY+ L+ E+A +K A L+FG Q
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIK-KAITAGLSFGITQ----- 232
Query: 378 LKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPL 434
I + L++ F A + G L+VG + L QLS PL
Sbjct: 233 ---------------LISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 92.0 bits (229), Expect = 3e-19
Identities = 68/289 (23%), Positives = 109/289 (37%), Gaps = 41/289 (14%)
Query: 412 HGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQ--AFIDMQTMF---TLMLKEPTIKN 466
G +T G L+ G Q+ L + Y + A + F + T K
Sbjct: 317 SGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKP 376
Query: 467 KANALPLVLTTS-NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKST 525
+ + + I +++ + S LNF + G+ + I G SG+GK++
Sbjct: 377 ARTGRRIDFDDNADHGITLENLSLR-TPDGQTLL-SELNFEVRPGERLLITGESGAGKTS 434
Query: 526 IIRLLYRFFEPNAGA-IYIDGKNINDVDLDSLRRHIAIVPQDPVL----FHDTILY-NIN 579
++R L AG + G+ D L +PQ P L + + Y N
Sbjct: 435 LLRAL-------AGLWPWGSGRISMPADSALL-----FLPQRPYLPQGTLREALCYPNAA 482
Query: 580 YGDKSKSYEETIEAAKLADL---HNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636
+ L DL + +W LSGGE+QR+A AR +L
Sbjct: 483 PDFSDAELVAVLHKVGLGDLAERLDEEDRW-----------DRVLSGGEQQRLAFARLLL 531
Query: 637 KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHL 685
+ DEATS+LD TE+ + LK + T I + HR T+ +
Sbjct: 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR-PTLWNF 579
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 87.8 bits (218), Expect = 4e-19
Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 23/205 (11%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+E RD+ +SY D +NF G+ VA++G +G+GKST+ +P +G +
Sbjct: 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 542 YIDGKNI--NDVDLDSLRRHIAIVPQDP--VLFHDTILYNINYG------DKSKSYEETI 591
I G+ I + L +R+ + IV Q+P LF T+ ++ +G K + +
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
EA K + K P+H LSGG+K+RVAIA + I+V DE TS L
Sbjct: 120 EALKAVGMEGFENKPPHH-----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
Query: 652 DSITENNILSSLKTASRNKTTICIA 676
D + + I+ L ++ TI I+
Sbjct: 169 DPMGASQIMKLLYDLNKEGITIIIS 193
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 87.1 bits (216), Expect = 5e-19
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 46/212 (21%)
Query: 495 HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD 554
H + + ++ + G+ VAI+G SGSGK+T++R + +P AG I + D+ +D
Sbjct: 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-----RVGDITID 68
Query: 555 S-------------LRRHIAIVPQDPVLF-HDTILYNINYGD---KSKSYEETIEAAK-- 595
+ LR+H+ V Q+ LF H T+L NI G K + EE A+
Sbjct: 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARAREL 128
Query: 596 LADLHNSIIKWPNHYETQVGERG------LKLSGGEKQRVAIARAILKNTPILVFDEATS 649
LA +VG G +LSGG++QRVAIARA+ +++FDE TS
Sbjct: 129 LA---------------KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTS 173
Query: 650 SLDSITENNILSSLKT-ASRNKTTICIAHRLS 680
+LD +L++++ A +T + + H +S
Sbjct: 174 ALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS 205
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 89.3 bits (222), Expect = 5e-19
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 22/189 (11%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557
+++ ++ G+ V ++G SG GK+T++R++ AG IY G++I L +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQK 75
Query: 558 RHIAIVPQDPVLFHD-TILYNINYGDKSKSY------EETIEAAKLADLHNSIIKWPNHY 610
R IV Q LF + T+ NI YG K++ E E L L S K+P
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG-- 133
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-- 668
+LSGG++QRVA+ARA+ + +L+ DE S+LD+ ++ + ++ R
Sbjct: 134 ---------QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL 184
Query: 669 NKTTICIAH 677
TTI + H
Sbjct: 185 GVTTIMVTH 193
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 87.0 bits (216), Expect = 5e-19
Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 28/198 (14%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
SI+ +N Y + ++ P G+++ ++G SG+GKS+++R+L P +G
Sbjct: 2 SIQLNGINCFY---GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 541 IYIDG------KNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG-------DKSKS 586
+ I G K +D + LRR++ +V Q L+ H T+ N+ K ++
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA 118
Query: 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
+ + L ++P L LSGG++QRVAIARA++ +L+FDE
Sbjct: 119 LARAEKLLERLRLKPYADRFP-----------LHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 647 ATSSLDSITENNILSSLK 664
T++LD I+S ++
Sbjct: 168 PTAALDPEITAQIVSIIR 185
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 89.7 bits (222), Expect = 6e-19
Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 24/189 (12%)
Query: 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG---KNINDVDLDSLRR-H 559
+ I G+ I+G SGSGKST++RLL R EP G + IDG I+D +L +RR
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 560 IAIVPQDPVLF-HDTILYNINYGDK------SKSYEETIEAAKLADLHNSIIKWPNHYET 612
IA+V Q L H T+L N +G + + E+ ++A + L N +P+
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD---- 163
Query: 613 QVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRNK 670
+LSGG +QRV +ARA+ N IL+ DEA S+LD + + L A +
Sbjct: 164 -------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR 216
Query: 671 TTICIAHRL 679
T + I+H L
Sbjct: 217 TIVFISHDL 225
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 88.9 bits (220), Expect = 6e-19
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 495 HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA--GAIYIDGKNINDVD 552
+ +L+ I AG+ +A++G SG GK+T++R + F + G I I +++
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTH-- 73
Query: 553 LDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSI--IKWPNH 609
+R +A++ Q+ LF H + N+ +G +++ + A ++AD + H
Sbjct: 74 APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH 133
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR- 668
Q LSGG +QR+AIARAI +L+ DE S+LD+ N+ +
Sbjct: 134 LPAQ-------LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186
Query: 669 --NKTTICIAH 677
T +C+ H
Sbjct: 187 LPELTILCVTH 197
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 87.0 bits (215), Expect = 7e-19
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 29/231 (12%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
V + I+ ++N Y +K N++ IP A++G SG GKST IR L R
Sbjct: 5 VQNVAQPQIKVENLNLWYGEKQA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61
Query: 534 FE--PNA---GAIYIDGKNI--NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG----- 581
+ N G + I+G++I DVD+ LR+++ +V Q P F +I N+ YG
Sbjct: 62 NDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHG 121
Query: 582 ----DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILK 637
D E + +A L D + +K P L LSGG++QR+ IAR +
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSP----------ALSLSGGQQQRLCIARTLAV 171
Query: 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGY 688
I++FDE TS+LD I+ I + ++ T + + H + + Y
Sbjct: 172 KPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDY 222
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 87.2 bits (216), Expect = 9e-19
Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Query: 481 SIEFRDVNFSYIDKHT--KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
SI+F +V++ Y K+ N++F + G VA+VG +GSGKST+++ +P++
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 539 GAIYIDGKNIN----DVDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEETIE 592
G I I G +I + +L LR+ +++V Q P LF +T+L ++ +G K+ + E +
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSE--D 119
Query: 593 AAKLADLHNSIIKWPNHY---ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
AK +KW E + + +LSGG+ +RVAIA + IL DE +
Sbjct: 120 EAK-----EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174
Query: 650 SLDSITENNILSSLKTASR-NKTTICIAHRLSTI 682
LD ++ K + T I + H + +
Sbjct: 175 GLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDV 208
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 87.9 bits (217), Expect = 1e-18
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 8/210 (3%)
Query: 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-----PN 537
E R+ NF Y+++ TK + +LN I K A +G SG GKST +R L + + +
Sbjct: 82 EIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 538 AGAIYIDGKNINDVDLDSL--RRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAK 595
G IY G N + SL R I +V Q P F +I N+ YG ++ + K
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 596 LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
+ + + + + + G LSGG++QR+ IARAI +L+ DE TS+LD I
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 656 ENNILSSLKTASRNKTTICIAHRLSTIKHL 685
I + + + I + H ++ + +
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRI 290
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 86.9 bits (215), Expect = 1e-18
Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 43/262 (16%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
A I DV ++ + HT + +FT+P G A+VG +GSGKST+ + L F
Sbjct: 3 QQAGIVVNDVTVTWRNGHTA--LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60
Query: 538 AGAIYIDGKNINDVDLDSLRRH-IAIVPQD-------PVLFHDTILYNINYGD-----KS 584
+G I I G+ +L+++ +A VPQ PVL D ++ YG ++
Sbjct: 61 SGKISILGQPTRQ----ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMG-RYGHMGWLRRA 115
Query: 585 KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644
K + I A LA + Q+GE LSGG+K+RV +ARAI + +++
Sbjct: 116 KKRDRQIVTAALAR-----VDMVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILL 166
Query: 645 DEATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIKHLLGYKAHRK---------- 693
DE + +D TE I+S L+ KT + H L ++ Y K
Sbjct: 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTE 226
Query: 694 ---TSTNLVRGNSSAMRSMSLS 712
T+ NL S +R ++L+
Sbjct: 227 TTFTAENLELAFSGVLRHVALN 248
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 86.2 bits (213), Expect = 1e-18
Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 26/235 (11%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA-- 538
+I+ +++F Y T++I ++ I K AI+G SG GKST ++ L R E +
Sbjct: 7 AIKVNNLSFYY---DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63
Query: 539 ---GAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIE- 592
G + +NI + V+L+ LRR +++V P LF ++ N+ YG K + +E
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 593 ------AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
A K ADL + I + ++ + L LSGG++QR+ IARA+ +L+ DE
Sbjct: 124 DDIVESALKDADLWDEI-------KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 647 ATSSLDSITENNILSSLKTAS-RNKTTICI-AHRLSTIKHLLGYKAHRKTSTNLV 699
LD I + S +++ R++ T+ I +H L + L + A K + N +
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRI 231
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 85.2 bits (212), Expect = 1e-18
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+E ++N Y I ++ T+P G+ VA++G +G+GK+T+++ + P +G+I
Sbjct: 1 LEVENLNAGYGKSQ---ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57
Query: 542 YIDGKNINDVDLDS-LRRHIAIVPQDPVLFHD-TILYNIN---YGDKSKSYEETIEAA-- 594
DG++I + R I VP+ +F + T+ N+ Y + + +E
Sbjct: 58 RFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYE 117
Query: 595 ---KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
+L + LSGGE+Q +AIARA++ +L+ DE + L
Sbjct: 118 LFPRLKERRKQ--------------LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163
Query: 652 DSITENNILSSLKTASRNKTTI 673
I +++ TI
Sbjct: 164 APKIVEEIFEAIRELRDEGVTI 185
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 83.2 bits (207), Expect = 1e-18
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 59/187 (31%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK--NINDVDLDSLRRH 559
++ ++ G+ A++G +G+GKST++++L ++P++G I +DGK + D+ R
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPR-DARRAG 76
Query: 560 IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGL 619
IA+V Q VGER
Sbjct: 77 IAMVYQLS----------------------------------------------VGER-- 88
Query: 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHR 678
Q V IARA+ +N +L+ DE T++L + ++ ++ I I+HR
Sbjct: 89 -------QMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141
Query: 679 LSTIKHL 685
L + +
Sbjct: 142 LDEVFEI 148
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 86.3 bits (214), Expect = 1e-18
Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 22/206 (10%)
Query: 481 SIEFRDVNFSYID--KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
I ++V+++Y R ++N TI G A +G +GSGKSTI++LL P
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 539 GAIYIDGKNIN----DVDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDK----SKSYE 588
G++ +D I + D+ +R+ + +V Q P LF +T+L ++ +G + S+
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP-ILVFDEA 647
E + KLA + S E+ + +LSGG+ +RVAIA IL P ILV DE
Sbjct: 122 EALAREKLALVGIS--------ESLFEKNPFELSGGQMRRVAIA-GILAMEPKILVLDEP 172
Query: 648 TSSLDSITENNILSSLKTASRNKTTI 673
T+ LD +++ K ++ TI
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQSGMTI 198
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 89.5 bits (222), Expect = 1e-18
Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 39/211 (18%)
Query: 481 SIEFRDVNFSYIDKHTKRIFS--NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
++E R+V F+Y D F +N TI G+ V ++GG+GSGKST+ LL ++P +
Sbjct: 322 TLELRNVRFAYQDNA----FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS 377
Query: 539 GAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIE------ 592
G I +DGK ++ L+ R+ + V D LF + G + K+ + IE
Sbjct: 378 GEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRL 431
Query: 593 --AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
A K + LKLS G+K+R+A+ A+L+ ILV DE +
Sbjct: 432 ELAHKTSLNDGRFSN-------------LKLSTGQKKRLALLLALLEERDILVLDEWAAD 478
Query: 651 LDSITE----NNILSSLKTASRNKTTICIAH 677
D +L LK + KT I+H
Sbjct: 479 QDPAFRREFYQVLLPLLK--EQGKTIFAISH 507
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 85.9 bits (212), Expect = 1e-18
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 15/212 (7%)
Query: 489 FSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK-- 546
+ YI+ K I ++ IP I+G SGSGKST++++L R E I +DGK
Sbjct: 17 YLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVL 74
Query: 547 ----NINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHN 601
+I +D LR+ + +V Q P F H +I NI Y KS +E E K+ +
Sbjct: 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI--VEE 132
Query: 602 SIIK---WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENN 658
+ K W Y+ ++ +LSGG++QR+ IARA+ +L+ DE TS +D +
Sbjct: 133 CLRKVGLWKEVYD-RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQA 191
Query: 659 ILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690
I + + ++H + + Y A
Sbjct: 192 IEKLITELKNEIAIVIVSHNPQQVARVADYVA 223
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 85.2 bits (211), Expect = 2e-18
Identities = 48/189 (25%), Positives = 100/189 (52%), Gaps = 17/189 (8%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
+ ++ ++ ++V + +I +N++F++ AG+ I G SG GKST+++++
Sbjct: 1 MQENSPLLQLQNVGYL---AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57
Query: 535 EPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNI--NYGDKSKSYEETIE 592
P +G + +G++I+ + + R+ ++ Q P LF DT+ N+ + +++ + I
Sbjct: 58 SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIF 117
Query: 593 AAKLA--DLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
L L ++I+ + E LSGGEKQR+++ R + +L+ DE TS+
Sbjct: 118 LDDLERFALPDTILTKN------IAE----LSGGEKQRISLIRNLQFMPKVLLLDEITSA 167
Query: 651 LDSITENNI 659
LD ++N+
Sbjct: 168 LDESNKHNV 176
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 85.3 bits (211), Expect = 2e-18
Identities = 68/202 (33%), Positives = 100/202 (49%), Gaps = 21/202 (10%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PN---AGA 540
+N Y H N+N +IP + AI+G SG GKST I+ L + PN G
Sbjct: 17 GMNLWYGQHHA---LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGE 73
Query: 541 IYIDGKNI--NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-----DKSKSYEETIEA 593
+ +G NI VDL LR++I +V Q F +I N+ YG K+K + I
Sbjct: 74 MNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVE 133
Query: 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
L D + W + + ++ + L LSGG++QR+ IARA+ N +L+ DE TS+LD
Sbjct: 134 KSLKD----VALW-DEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP 188
Query: 654 ITENNILSSLKTASRNKTTICI 675
++ I L + K TI I
Sbjct: 189 VSTRKI-EELILKLKEKYTIVI 209
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 85.6 bits (212), Expect = 2e-18
Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 27/214 (12%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
+ +EF+ V+F+Y D K ++++F+IP G A++G +GSGKSTI +L+ P+
Sbjct: 2 KDNIVEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 538 AGA---IYIDGKNINDVDLDSLRRHIAIVPQDP------VLFHDTILYNINYGDKSKSYE 588
I +DG + + +R + IV Q+P D + + + +
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM 120
Query: 589 ETIEAAKLAD--LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP-ILVFD 645
I LAD + + I P + LSGG+KQRVAIA IL P I++ D
Sbjct: 121 IKIVRDVLADVGMLDYIDSEPAN-----------LSGGQKQRVAIA-GILAVEPKIIILD 168
Query: 646 EATSSLDSITENNILSSLKTASRNK--TTICIAH 677
E+TS LD + IL ++ + T I I H
Sbjct: 169 ESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 84.9 bits (210), Expect = 3e-18
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
SI+ +N Y + ++ P G+++ ++G SG+GKS+++R+L P +G
Sbjct: 2 SIQLNGINCFY---GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 541 IYIDGKNIN------DVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG-------DKSKS 586
+ I G + + D + LRR++ +V Q L+ H T+ N+ K ++
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQA 118
Query: 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
+ K L ++P L LSGG++QRVAIARA++ +L+FDE
Sbjct: 119 LARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 647 ATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIK 683
T++LD I+S +K A T + + H + +
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVAR 205
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 85.7 bits (212), Expect = 3e-18
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 19/209 (9%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
S + ++ FS + + N+N I G+ +AI G +GSGK++++ L+ EP+
Sbjct: 31 RKHSSDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS 90
Query: 538 AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEET--IEAAK 595
G I G+ I+ Q + TI NI +G SY+E K
Sbjct: 91 EGKIKHSGR-------------ISFSSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVK 134
Query: 596 LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
L I K+P T +GE G+ LSGG++ R+++ARA+ K+ + + D LD T
Sbjct: 135 ACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
Query: 656 ENNILSS-LKTASRNKTTICIAHRLSTIK 683
E I S + NKT I + ++ +K
Sbjct: 195 EKEIFESCVCKLMANKTRILVTSKMEHLK 223
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 83.8 bits (208), Expect = 3e-18
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 27/165 (16%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
+ +FS L+FT+ AG+++ + G +GSGK+T++RL+ P AG I +DG +I+D D+
Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEA 74
Query: 557 RRHIAIVPQD---PVLFHDTILYNIN-----YGDKSKSYEETIEAAKLADLHNSIIKWPN 608
++ ++ P L T+ N+ G + +EA LA L + P
Sbjct: 75 CHYLG--HRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL----PF 125
Query: 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
Y LS G+K+RVA+AR ++ N PI + DE T++LD+
Sbjct: 126 GY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 84.8 bits (210), Expect = 3e-18
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 25/190 (13%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PNA 538
I+ +D+N Y H ++N I A +G SG GKST++R L R E P A
Sbjct: 4 RIDVKDLNIYYGSFHA---VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGA 60
Query: 539 ---GAIYIDGKNINDVDLD--SLRRHIAIVPQDPVLF-----HDTILYNINY-GDKSKS- 586
G + +DG+++ +D ++RR I +V Q P F D ++ + G ++K
Sbjct: 61 RVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKD 120
Query: 587 YEETIEAA-KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645
+E +E + + A+L W N + ++ + G LSGG++QR+ IARAI +L+ D
Sbjct: 121 LDELVEKSLRGANL------W-NEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173
Query: 646 EATSSLDSIT 655
E S+LD I+
Sbjct: 174 EPCSALDPIS 183
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 84.9 bits (210), Expect = 3e-18
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
+IE ++ Y H + ++ IP A++G SG GKST++R R E N
Sbjct: 2 KFAIETVNLRVYYGSNH---VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE 58
Query: 539 -----GAIYIDGKNI--NDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK----SKS 586
G + + G+NI DVD +RR + +V Q P F H TI N+ G K KS
Sbjct: 59 EARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKS 118
Query: 587 YEETIE----AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPIL 642
+E E A K A L + + N Y + LSGG++QR+ IARA+ IL
Sbjct: 119 KKELDERVEWALKKAALWDEVKDRLNDYPSN-------LSGGQRQRLVIARALAMKPKIL 171
Query: 643 VFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
+ DE T+++D + I L + T + + H
Sbjct: 172 LMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 88.1 bits (219), Expect = 4e-18
Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 43/208 (20%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD---LDSLRR 558
++ T+ G+++ +VG SGSGKST+ L R G I DG++I+ + + LRR
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRR 363
Query: 559 HIAIVPQDP-----------------VLFHDTILYNINYGDKSKSYEETIEAAKL--ADL 599
+ +V QDP + H+ L + ++ + E +E L A
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKL---SAAERDQRVIEALEEVGLDPATR 420
Query: 600 HNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+ ++P+ + SGG++QR+AIARA++ +++ DE TS+LD + +
Sbjct: 421 N----RYPHEF-----------SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQV 465
Query: 660 LSSLKT--ASRNKTTICIAHRLSTIKHL 685
L L+ + + I+H L+ ++ L
Sbjct: 466 LDLLRDLQQKHGLSYLFISHDLAVVRAL 493
Score = 76.9 bits (190), Expect = 2e-14
Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 30/237 (12%)
Query: 476 TTSNASIEFRDVNFSY-IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKS----TIIRLL 530
+ + R+++ ++ + T ++F I AG+++A+VG SGSGKS +I+ LL
Sbjct: 1 MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60
Query: 531 -YRFFEPNAGAIYIDGKNINDVDLDSLRR----HIAIVPQDPVLFHDTILYNINYGDKSK 585
+G+I DG+++ LR I ++ Q+P+ + L+ I K
Sbjct: 61 PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNP-LHTI-----GK 114
Query: 586 SYEETIE---AAKLADLHNSIIKWPNHYETQVGERGLK-----LSGGEKQRVAIARAILK 637
E + A ++ E+ L LSGG++QRV IA A+
Sbjct: 115 QLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174
Query: 638 NTPILVFDEATSSLDSITENNILSSLKT--ASRNKTTICIAHRLSTIKHLLGYKAHR 692
+L+ DE T++LD + IL LK A + I H L ++ A R
Sbjct: 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKF----ADR 227
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 86.0 bits (213), Expect = 4e-18
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 12/167 (7%)
Query: 515 IVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDT 573
++G SG GK+T++RLL F +P++G+I +DG+++ +V RHI +V Q LF H T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP--PHLRHINMVFQSYALFPHMT 58
Query: 574 ILYNINYGDK-SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632
+ N+ +G K K I+ L L ++ E + +LSGG++QRVA+A
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEAL--RLV----QLEEFADRKPHQLSGGQQQRVALA 112
Query: 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASRN--KTTICIAH 677
RA++ IL+ DE S+LD + + LKT T + + H
Sbjct: 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 84.8 bits (210), Expect = 4e-18
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE D++F Y D + L+ +IP G A++G +G+GKST++ L + P G +
Sbjct: 5 IEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDP--VLFHDTILYNINYG------DKSKSYEETIEA 593
+ G+ +N + +R + +V QDP +F T+ ++ +G DK + EA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 594 AKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
K + + K P H LS G+K+RVAIA + + ++V DE + LD
Sbjct: 123 LKAVRMWDFRDKPPYH-----------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 654 ITENNILSSLKTASRNKTTICIA 676
+ ++ L T+ +A
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVA 194
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 86.4 bits (214), Expect = 5e-18
Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 19/192 (9%)
Query: 462 PTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGS 521
P K + PL +E R++ S+ +H +++ TI G+ A++G SG
Sbjct: 8 PQAKTRKALTPL--------LEIRNLTKSFDGQHA---VDDVSLTIYKGEIFALLGASGC 56
Query: 522 GKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINY 580
GKST++R+L F +P AG I +DG +++ V +R I ++ Q LF H T+ NI +
Sbjct: 57 GKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPYQRPINMMFQSYALFPHMTVEQNIAF 114
Query: 581 GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
G K + A+++ ++ + H + + +LSGG++QRVA+AR++ K
Sbjct: 115 GLKQDKLPKAEIASRVNEMLGLV-----HMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169
Query: 641 ILVFDEATSSLD 652
+L+ DE +LD
Sbjct: 170 LLLLDEPMGALD 181
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 84.2 bits (208), Expect = 5e-18
Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 16/208 (7%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PN 537
IE RD+ S+ + +N IP A++G SGSGKST++R+ R E P
Sbjct: 2 NKIEIRDLKVSFGQV---EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPE 58
Query: 538 A---GAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TILYNINYGDK----SKSYEE 589
A G +Y+DG++I +D+ LRR + +V Q P + +I N+ G K KS +E
Sbjct: 59 ARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKE 118
Query: 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
E + A L + + W + + ++ KLSGG++QR+ IARA+ +L+ DE T+
Sbjct: 119 LQERVRWA-LEKAQL-W-DEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175
Query: 650 SLDSITENNILSSLKTASRNKTTICIAH 677
+LD I S ++ T + + H
Sbjct: 176 NLDPENTAKIESLFLELKKDMTIVLVTH 203
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 84.4 bits (209), Expect = 6e-18
Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 23/184 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
++ R V+F+ + + IF N++ T+P GK AI+G SG GK+T++RL+ P+ G I
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 542 YIDGKNINDVD---LDSLRRHIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLA 597
DG+NI + L ++R+ ++++ Q LF D + N+ Y + E T A L
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLR----EHTQLPAPL- 119
Query: 598 DLHNSIIKWPNHYETQVGERGL------KLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
LH++++ E VG RG +LSGG +R A+ARAI +++FDE
Sbjct: 120 -LHSTVMM---KLEA-VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 652 DSIT 655
D IT
Sbjct: 175 DPIT 178
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 84.2 bits (208), Expect = 7e-18
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 31/236 (13%)
Query: 461 EPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSG 520
++ K P + +E +D++ Y +K R ++++ I A++G SG
Sbjct: 2 VQMVREKIEIAPFPEAKEHI-LEVKDLSIYYGEK---RAVNDISMDIEKHAVTALIGPSG 57
Query: 521 SGKSTIIRLLYRFFE--PNA---GAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDT 573
GKST +R + R + P+A G I +G NI D +++ +LRR I +V Q P F +
Sbjct: 58 CGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKS 117
Query: 574 ILYNINY-----GDKSKSY-----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623
I NI + G++ KS EE++ A L D + ++ L LSG
Sbjct: 118 IYNNITHALKYAGERRKSVLDEIVEESLTKAALWD----------EVKDRLHSSALSLSG 167
Query: 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
G++QR+ IAR + +L+ DE S+LD I+ I + + I + H +
Sbjct: 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNM 223
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 87.2 bits (217), Expect = 7e-18
Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 31/208 (14%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN-DVDLDSLRRH 559
+++ ++ G+ A++G +G+GKST++++L+ ++P++G I +DGK + D++R
Sbjct: 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80
Query: 560 IAIVPQDPVLFHD-TILYNINYG---------DKSKSYEETIEAAKLADLHNSIIKWPNH 609
I +V Q +L T+ NI G D+ ++ +L++ + +
Sbjct: 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA---RIKELSERYGLPVDP--- 134
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL-DSITEN--NILSSLKTA 666
+ +V + LS GE+QRV I +A+ + +L+ DE T+ L + IL L
Sbjct: 135 -DAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA-- 187
Query: 667 SRNKTTICIAHRLSTIKHLLGYKAHRKT 694
+ KT I I H+L + + A R T
Sbjct: 188 AEGKTIIFITHKLKEVMAI----ADRVT 211
Score = 49.5 bits (119), Expect = 6e-06
Identities = 35/166 (21%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI-NDVDLDSLRRH 559
+++F + AG+ V I G +G+G+S ++ + +P +G I ++GK++ + RR
Sbjct: 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334
Query: 560 -IAIVPQDPV---------LFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNH 609
+A VP+D L + +L + S+ ++ + +I+
Sbjct: 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGG--FLDRRAIRKFARELIE---E 389
Query: 610 YETQVGERGLK---LSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
++ + LSGG +Q++ +AR + + +L+ + T LD
Sbjct: 390 FDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 86.0 bits (213), Expect = 8e-18
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
+ S+ S+EF D + ++ ++ G V +VG +G+GK+T++R +
Sbjct: 4 IDVSDLSVEFGDT----------TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL 53
Query: 535 EPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVL-FHDTILYNINYG------------ 581
P AG + + G ++ + + R +A VPQD L F + + G
Sbjct: 54 TPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT 113
Query: 582 -DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGL-KLSGGEKQRVAIARAILKNT 639
+ E +E +A Q +R + LSGGE+QRV +ARA+ + T
Sbjct: 114 ETDRAAVERAMERTGVA---------------QFADRPVTSLSGGERQRVLLARALAQAT 158
Query: 640 PILVFDEATSSLD 652
P+L+ DE T+SLD
Sbjct: 159 PVLLLDEPTASLD 171
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 84.1 bits (208), Expect = 8e-18
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 31/216 (14%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
++ ++N++Y D +N I G+ AI+GG+G+GKST+ + L +P++G I
Sbjct: 6 LKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 542 YIDGKNIN--DVDLDSLRRHIAIVPQDP--VLFHDTILYNINYG---------DKSKSYE 588
DGK I+ L LR + +V QDP LF ++ ++++G + K +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
++ + L + P H LS G+K+RVAIA ++ +LV DE T
Sbjct: 124 NALKRTGIEHLKDK----PTHC----------LSFGQKKRVAIAGVLVMEPKVLVLDEPT 169
Query: 649 SSLDSITENNILSSLK-TASRNKTTICIA-HRLSTI 682
+ LD + + I+ L TI IA H + +
Sbjct: 170 AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV 205
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 84.3 bits (209), Expect = 8e-18
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 28/213 (13%)
Query: 482 IEFRDVNFSYIDK--HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
I F+ V Y K +R ++N +IP+G VAI+G +GSGKST+++ L +P +G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 540 AIYIDGKNI----NDVDLDSLRRHIAIVPQDP--VLFHDTILYNI-----NYGDKSKSYE 588
+ I + I + L LR+ + IV Q P LF +T+ +I N+G + +
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 589 ETI-EAAKLADLHNSII-KWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
+ E +L L ++ + P +LSGG+ +RVAIA + +LV DE
Sbjct: 123 QKAREMIELVGLPEELLARSP-----------FELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 647 ATSSLDSITENNILSSLKTASRNK--TTICIAH 677
T+ LD ++ + K TT+ + H
Sbjct: 172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTH 204
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 83.9 bits (207), Expect = 9e-18
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 26/225 (11%)
Query: 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PN--- 537
E +NF Y + N+N + + A++G SG GKST +R R + P
Sbjct: 18 EVNKLNFYY---GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 538 AGAIYIDGKNIN----DVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKS------Y 587
G I + N+N +VD +R I++V Q P F +I N+ YG + +
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
EE +E A L N+ + W + + ++G+ LSGG++QR+ IARA+ + IL+FDE
Sbjct: 135 EERVENA----LRNAAL-W-DEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188
Query: 648 TSSLDSITENNILSSLKTASRNKTTICI-AHRLSTIKHLLGYKAH 691
TS+LD I +I L + +NK TI I H + + Y A+
Sbjct: 189 TSALDPIATASI-EELISDLKNKVTILIVTHNMQQAARVSDYTAY 232
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 83.5 bits (206), Expect = 1e-17
Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 16/215 (7%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
+ + A IE ++N Y D + +N+N I A++G SG GKST +R L R
Sbjct: 1 MPKNEAIIETENLNLFYTDF---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN 57
Query: 535 E-----PNAGAIYIDGKNI--NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSY 587
+ G + +GKNI N+ D+ LRR I +V Q P F +I NI+YG K
Sbjct: 58 DLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGT 117
Query: 588 EETIEAAKLADLHNSIIK---WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF 644
++ + ++ + S+ K W N + ++ L LSGG++QR+ IAR + +++
Sbjct: 118 KDKKKLDEIVE--QSLKKSALW-NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILM 174
Query: 645 DEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
DE TS+LD I+ I + + T I + H +
Sbjct: 175 DEPTSALDPISTGKIEELIINLKESYTIIIVTHNM 209
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 84.6 bits (210), Expect = 1e-17
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 53/209 (25%)
Query: 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD---LDSLRRHIA 561
FT+ GK++A+VG SG GKST+ RLL P G +Y G+++ D LR+ I
Sbjct: 36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQ 95
Query: 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG--ER-- 617
IV Q+P YG S + + + I++ P T + ER
Sbjct: 96 IVFQNP------------YG--SLNPRKKVGQ---------ILEEPLLINTSLSAAERRE 132
Query: 618 ---------GLK----------LSGGEKQRVAIARAILKNTPILVFDEATSSLD-SITEN 657
GL+ SGG++QR+AIARA++ + ++V DE S+LD S+
Sbjct: 133 KALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQ 192
Query: 658 --NILSSLKTASRNKTTICIAHRLSTIKH 684
N++ L+ + + I+H LS ++H
Sbjct: 193 VLNLMMDLQ-QELGLSYVFISHDLSVVEH 220
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 86.9 bits (215), Expect = 1e-17
Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 24/301 (7%)
Query: 388 NFGQ---SAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQL--SMPLGFLGSVYR 442
NFGQ + A+ + +FA+ + A + V L+ + G L L ++P+ +
Sbjct: 242 NFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQI-- 299
Query: 443 EVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFS- 501
Q D F E + + N L L S SIE +DV+ + F+
Sbjct: 300 -ACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFAL 358
Query: 502 -NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560
++ I G V IVG +G GKST+ +L + P G I +DG ++ D R
Sbjct: 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLF 418
Query: 561 AIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLK 620
+ + D LF D L + G+ + +L I+ T
Sbjct: 419 SAIFADFHLFDD--LIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTT------A 470
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLD----SITENNILSSLKTASRNKTTICIA 676
LS G+++R+A+ A L++ PIL+FDE + D +L LK + KT I I+
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK--RQGKTIIIIS 528
Query: 677 H 677
H
Sbjct: 529 H 529
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 83.4 bits (206), Expect = 1e-17
Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 24/218 (11%)
Query: 477 TSNASIEF--RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
T+ + F +++N Y + H N+N I + AI+G SG GKST I+ L R
Sbjct: 18 TAPKKVVFDTQNLNLWYGEDHA---LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74
Query: 535 E-----PNAGAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK---- 583
E G I +NI D ++ LR ++ +V Q P F +I N+ YG K
Sbjct: 75 ELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGI 134
Query: 584 --SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641
K+ +E +E + L + I W + + ++ + LSGG++QR+ IAR + +
Sbjct: 135 KDKKTLDEIVEKS----LRGAAI-W-DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDV 188
Query: 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
++ DE TS+LD I+ + ++ ++ + I + H +
Sbjct: 189 ILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNM 226
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 83.0 bits (205), Expect = 1e-17
Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 41/214 (19%)
Query: 487 VNFSYIDKHTK--RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
V FS + K + LNF++ AG+ VA++G SGSGKSTI+R+L + G I ++
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 545 GKNI-------------NDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG--------- 581
G+ + ++ L +R I +V Q LF H T+L N+
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 582 -DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
+ K E ++ LAD +H Q LSGG++QRVAIARA+
Sbjct: 121 AEAEKRAMELLDMVGLADK-------ADHMPAQ-------LSGGQQQRVAIARALAMRPK 166
Query: 641 ILVFDEATSSLDSITENNILSSL-KTASRNKTTI 673
+++FDE TS+LD +L+ + + AS + T+
Sbjct: 167 VMLFDEVTSALDPELVGEVLNVIRRLASEHDLTM 200
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 81.5 bits (202), Expect = 2e-17
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
++ D+ +Y KR+ +++ + G+ +G +G+GK+T ++++ +P++G I
Sbjct: 1 LKTNDLTKTY---GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF------HDTILYNINYGDKSKSYEETIEAAK 595
DGK+ R I + + P + + L G + K +E ++
Sbjct: 58 TFDGKSY--QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG 115
Query: 596 LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD--S 653
L D +K S G KQR+ IA A+L N +L+ DE T+ LD
Sbjct: 116 LKDSAKKKVK--------------GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 654 ITE-NNILSSLKTASRNKTTICIAHRLSTI 682
I E ++ SL + T + +H LS I
Sbjct: 162 IKELRELILSL--RDQGITVLISSHLLSEI 189
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 84.5 bits (209), Expect = 2e-17
Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 29/217 (13%)
Query: 472 PLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY 531
+ + S +I+ V+ SY DK + + L+FT+ +G+ ++G +G+GKSTI R++
Sbjct: 32 SIPGSMSTVAIDLAGVSKSYGDK---AVVNGLSFTVASGECFGLLGPNGAGKSTIARMIL 88
Query: 532 RFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ----DP--VLFHDTILYNINYGDKSK 585
P+AG I + G + R I +VPQ D + + +++ +G ++
Sbjct: 89 GMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR 147
Query: 586 SYEETI----EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641
E I E A+L E++ R LSGG K+R+ +ARA++ + +
Sbjct: 148 EIEAVIPSLLEFARL--------------ESKADARVSDLSGGMKRRLTLARALINDPQL 193
Query: 642 LVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAH 677
L+ DE T+ LD + I L++ +R KT + H
Sbjct: 194 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 82.4 bits (204), Expect = 2e-17
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 23/165 (13%)
Query: 495 HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD 554
+ + + L+ IPAG+ VA+VG SG GKST++RLL P+AG + + G L
Sbjct: 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGT----APLA 77
Query: 555 SLRRHIAIVPQDPVLFH-DTILYNINYGDKSK---SYEETIEAAKLADLHNSIIKWPNHY 610
R ++ QD L ++ N+ G K + + + + A LAD N +WP
Sbjct: 78 EAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN---EWP--- 131
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
LSGG+KQRVA+ARA++ +L+ DE +LD++T
Sbjct: 132 --------AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 85.8 bits (213), Expect = 3e-17
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 482 IEFRDVNFSYIDKHTKRIFS--NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
+E R+V F+Y D FS +N TI G+ + ++GG+GSGKST+ LL ++P +G
Sbjct: 323 LELRNVTFAYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG 378
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADL 599
I +DGK + + R+ + V D LF + G + K + L L
Sbjct: 379 EILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL------GPEGKPANPALVEKWLERL 432
Query: 600 HNSIIKWPNHYETQVGER--GLKLSGGEKQRVAIARAILKNTPILVFDE 646
H R LKLS G+K+R+A+ A+ + IL+ DE
Sbjct: 433 KM------AHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 81.9 bits (202), Expect = 3e-17
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 34/200 (17%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV-------------DLDS 555
AG ++I+G SGSGKST +R + +P+ G+I ++G+ IN V L
Sbjct: 30 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89
Query: 556 LRRHIAIVPQDPVLF-HDTILYNINYG-------DKSKSYEETIE-AAKLADLHNSIIKW 606
LR + +V Q L+ H T+L N+ K ++ E ++ AK+ + K+
Sbjct: 90 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY 149
Query: 607 PNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL-KT 665
P H LSGG++QRV+IARA+ +L+FDE TS+LD +L + +
Sbjct: 150 PVH-----------LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198
Query: 666 ASRNKTTICIAHRLSTIKHL 685
A KT + + H + +H+
Sbjct: 199 AEEGKTMVVVTHEMGFARHV 218
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 85.5 bits (212), Expect = 4e-17
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 28/204 (13%)
Query: 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNIND 550
+ K + N++ G+ +A++G SG+GK+T++ L +G++ ++G I
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI-- 92
Query: 551 VDLDSLRRHIAIVPQDPVLF-----HDTILY--------NINYGDKSKSYEETIEAAKLA 597
D +R A V QD + + +++ + +K + +E ++A L
Sbjct: 93 -DAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR 151
Query: 598 DLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITEN 657
N+ I P R LSGGE++R+A A +L + P+L DE TS LDS
Sbjct: 152 KCANTRIGVPG--------RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAY 203
Query: 658 NILSSLKT-ASRNKTTICIAHRLS 680
+++ LK A + KT IC H+ S
Sbjct: 204 SVVQVLKGLAQKGKTIICTIHQPS 227
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 80.6 bits (199), Expect = 7e-17
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 47/228 (20%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
+L S+ S+ + K+ ++++ + A++G SGSGKST++R + R
Sbjct: 5 ILQVSDLSVYYNK----------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRM 54
Query: 534 FEPN-----AGAIYIDGKNINDVDLDS--LRRHIAIVPQDPVLFHDTILYNINYG----- 581
+ N G+I +G NI D+ LR+ I +V Q P F +I N+ YG
Sbjct: 55 NDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKG 114
Query: 582 --DKS---KSYEETIEAAKLAD-----LHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631
DK ++ E++++ A + D LH+S L LSGG++QRV I
Sbjct: 115 IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS---------------ALGLSGGQQQRVCI 159
Query: 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
AR + + I++ DE TS+LD I+ I +L + T + + +
Sbjct: 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM 207
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 80.4 bits (199), Expect = 7e-17
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 22/185 (11%)
Query: 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIV 563
+ T+ G+ VAI+G SG+GKST++ L+ F P +G++ ++G++ RR ++++
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76
Query: 564 PQDPVLF-HDTILYNINYG-----DKSKSYEETIEA-AKLADLHNSIIKWPNHYETQVGE 616
Q+ LF H T+ NI G + + E + A A+ + + + + P
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG-------- 128
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT--ASRNKTTIC 674
+LSGG++QRVA+AR +++ PIL+ DE S+LD +L+ + R T +
Sbjct: 129 ---QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLM 185
Query: 675 IAHRL 679
++H L
Sbjct: 186 VSHSL 190
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 84.4 bits (209), Expect = 9e-17
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 479 NASIEFRDVNFSYID-KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
A +E +D+ SY + + ++ I AG+ VAIVG SGSGKST++ +L +P
Sbjct: 2 TALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT 61
Query: 538 AGAIYIDGKNINDVDLDSL----RRHIAIVPQD-PVLFHDTILYNIN----YGDKSKSYE 588
+G + G+++ +D D+L R H + Q +L H T N+ Y +
Sbjct: 62 SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR 121
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
L L E +V + +LSGG++QRV+IARA++ +++ DE T
Sbjct: 122 LLRAQELLQRL---------GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPT 172
Query: 649 SSLDSITENNILSSLKT-ASRNKTTICIAH 677
+LDS + +++ L R T I + H
Sbjct: 173 GALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 79.7 bits (197), Expect = 1e-16
Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 18/190 (9%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562
++FT+ G+ ++G +G+GK+T +R+L EP+AG +DG ++ ++ RR +
Sbjct: 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR-LGF 82
Query: 563 VPQDPVLFHD-TILYNINY-----GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGE 616
V L+ T N+ Y G K +E +LAD +
Sbjct: 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE--ELADRLGM-----EEL---LDR 132
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
R S G +Q+VAIARA++ + P+L+ DE T+ LD + + ++ I +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192
Query: 677 -HRLSTIKHL 685
H + ++ L
Sbjct: 193 THIMQEVERL 202
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 82.2 bits (204), Expect = 1e-16
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD----LDSLR 557
+N T+PA AI G SG+GK+++I + P G I ++G+ + D + L +
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 558 RHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGE 616
R I V QD LF H + N+ YG + + L + + ++P
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP--------- 126
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
LSGGEKQRVAI RA+L +L+ DE +SLD
Sbjct: 127 --GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 80.5 bits (198), Expect = 1e-16
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 24/213 (11%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA-- 538
+I+ +D++F Y +T + ++ I K AI+G SG GKST I+ L R E
Sbjct: 7 AIKVKDLSFYY---NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPV 63
Query: 539 ---GAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYG------DKSKSY 587
G + G+NI D ++++ LRR I +V Q P F +I N+ YG
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 588 EETIEAA-KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
+E +E+A K A L + + ++ + L LSGG++QR+ IARA+ +L+ DE
Sbjct: 124 DEIVESALKGAALWQEV-------KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 647 ATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
S+LD I + + + T + H +
Sbjct: 177 PCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 80.0 bits (198), Expect = 1e-16
Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I +V+ SY TK + +++ IP G +I+G +G+GKST++ ++ R + ++G I
Sbjct: 2 ITIENVSKSY---GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TILYNINYG------------DKSKSYE 588
IDG + L + ++I+ Q+ + T+ + +G D+
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI-IN 117
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
E IE L DL + + +LSGG++QR IA + ++T ++ DE
Sbjct: 118 EAIEYLHLEDLSDRYLD--------------ELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 649 SSLDSITENNILSSLKTASR--NKTTICIAH 677
++LD I+ L+ + KT + + H
Sbjct: 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLH 194
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 78.9 bits (195), Expect = 2e-16
Identities = 41/201 (20%), Positives = 89/201 (44%), Gaps = 29/201 (14%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS 555
+++F++ G+ ++G +G+GK+T IR++ P++G + DGK ++
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--- 68
Query: 556 LRRHIAIVPQD----------PVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
R I +P++ L + L + + + +E +E +L++ N ++
Sbjct: 69 -RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE 127
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665
+LS G +Q+V A++ + +L+ DE S LD + + ++
Sbjct: 128 --------------ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173
Query: 666 -ASRNKTTICIAHRLSTIKHL 685
A KT I H++ ++ L
Sbjct: 174 LARAGKTVILSTHQMELVEEL 194
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 79.3 bits (196), Expect = 2e-16
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 28/182 (15%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
++E ++F Y +R +++FT+ G+ VA++G +G+GKST+ LL R + G
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TILYNINY-----GDKSKSYEETIEAA 594
I + G ++ +L R + +V Q P L D ++ N+ Y G I
Sbjct: 58 ISVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAEL 116
Query: 595 KLADLHNSIIKWPNHYETQVGERGL----KLSGGEKQRVAIARAILKNTPILVFDEATSS 650
LA L + ER +L+GG ++RV IARA+L +L+ DE T
Sbjct: 117 -LARL-------------GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG 162
Query: 651 LD 652
LD
Sbjct: 163 LD 164
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 79.6 bits (196), Expect = 2e-16
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-- 535
+ I DV+ Y ++ + A++G SG GKST +R L R +
Sbjct: 2 AKKIITSSDVHLFY---GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLI 58
Query: 536 PNA---GAIYIDGKNINDVDLDS--LRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEE- 589
P G + + G+NI + D LR+ + +V Q P F +I N+ YG + ++
Sbjct: 59 PGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDK 118
Query: 590 -TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
++ A L + I W + + + E L LSGG++QRV IAR + +++ DE T
Sbjct: 119 AVLDEAVETSLKQAAI-W-DEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176
Query: 649 SSLDSITENNILSSLKTASRNKTTICIAHRLS 680
S+LD I+ I + L T I + H +
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMH 208
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 78.9 bits (195), Expect = 2e-16
Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 24/207 (11%)
Query: 482 IEFRDVNFSY-IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I R++N Y K++ ++N I G+ V + G SGSGK+T++ L+ G+
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 541 IYIDGKNINDV---DLDSLRRHIAIVPQDPVLFHD-TILYNINYG---DKSKSYEETIEA 593
+ + G+ + +L LRR+I + Q L T N+ + SY+E E
Sbjct: 62 LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER 121
Query: 594 A----KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
A + L + + +P+ LSGG+KQRVAIARA++ +++ DE T+
Sbjct: 122 ARAMLEAVGLGDHLDYYPH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTA 170
Query: 650 SLDSITENNILSSLKTASRNK-TTICI 675
+LDS + +++ ++ +R + TI I
Sbjct: 171 ALDSKSGRDVVELMQKLAREQGCTILI 197
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 79.8 bits (197), Expect = 2e-16
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 33/212 (15%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
L S+ S+ + S +++ TI +G+ V ++G SG GK+T++ L+ F
Sbjct: 4 LNVSHLSLSYEGKPRS--------ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55
Query: 535 EPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFH-DTILYNINYG------DKSKSY 587
P+ G+I ++G+ I + +V Q+ L ++ N+ +G +K++
Sbjct: 56 TPSRGSIQLNGRRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRR 110
Query: 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
E + L L + K+ LSGG +QRV IARA+ +L+ DE
Sbjct: 111 EIAHQMLALVGLEGAEHKYIWQ-----------LSGGMRQRVGIARALAVEPQLLLLDEP 159
Query: 648 TSSLDSITENNILSSLKTASR--NKTTICIAH 677
+LD++T + L + K + I H
Sbjct: 160 FGALDALTREQMQELLLDLWQETGKQVLLITH 191
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 81.4 bits (202), Expect = 2e-16
Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 28/183 (15%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
A ++ + V SY K ++ ++ + G+ + +VG SG GKST++R++ +G
Sbjct: 2 AGLKLQAVRKSYDGKT--QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK----SKSYEETI--- 591
I+I G+ +N +L+ R IA+V Q+ L+ H ++ N+ YG K K I
Sbjct: 60 EIWIGGRVVN--ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK---AEIEER 114
Query: 592 --EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
EAA++ +L + + P +LSGG++QRVA+ RAI++ + +FDE S
Sbjct: 115 VAEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163
Query: 650 SLD 652
+LD
Sbjct: 164 NLD 166
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 80.1 bits (198), Expect = 2e-16
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 38/231 (16%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
L S S + S +H + + +N++ ++ +G++VA++G SG GKST+ RLL
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQH-QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE 62
Query: 535 EPNAGAIYIDGKNINDVD---LDSLRRHIAIVPQDPV----------------LFHDTIL 575
P+ G + G+ + ++ + RR I +V QD + L H L
Sbjct: 63 SPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH---L 119
Query: 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635
+++ ++ E + A L D K P +LSGG+ QRV +ARA+
Sbjct: 120 LSLDKAERLARASEMLRAVDLDDSVLD--KRPP-----------QLSGGQLQRVCLARAL 166
Query: 636 LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTIC--IAHRLSTIKH 684
+L+ DEA S+LD + + ++ LK + T C I H L ++
Sbjct: 167 AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVER 217
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 80.1 bits (197), Expect = 2e-16
Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 11/186 (5%)
Query: 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
N +E ++ F Y + + ++F+I G+ V+I+G +GSGKST RL+ FE
Sbjct: 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61
Query: 539 GAIYIDGKNINDVDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSY--EETIEAA 594
G + IDG+ + ++ +LRR I +V Q+P T+ ++ +G +++ EE I+
Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV 121
Query: 595 KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654
A L +++ ++T+ R LSGG+KQRVA+A I I++ DE+TS LD
Sbjct: 122 DEALLAVNMLD----FKTREPAR---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPT 174
Query: 655 TENNIL 660
I+
Sbjct: 175 GRQEIM 180
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 80.6 bits (199), Expect = 2e-16
Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
+A + D++ Y D H ++ IP A++G SG GKST +R L R +
Sbjct: 42 GDAKLSVEDLDVYYGDDHA---LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRI 98
Query: 538 AGA-----IYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEET 590
A + +DG++I V+L LR+ + +V Q P F +I NI+YG + T
Sbjct: 99 KAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINT 158
Query: 591 IEAAKL-----ADLHNSIIK--------WPNHYETQVGERGLKLSGGEKQRVAIARAILK 637
A+L D + +++ W + ++ + L LSGG++QR+ IAR +
Sbjct: 159 GLLARLLGRDDKDAEDELVERSLRQAALW-DEVNDRLDDNALGLSGGQQQRLCIARCLAV 217
Query: 638 NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
+ +++ DE S+LD I + I ++ + T + + H +
Sbjct: 218 DPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNM 259
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 78.7 bits (194), Expect = 2e-16
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 28/188 (14%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR--RH 559
+N TI G+ ++++G SG GKST++ L+ +P +G + ++GK I + D + ++
Sbjct: 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQN 62
Query: 560 IAIVP-----QDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQV 614
+++P ++ L D +L +++ ++ EE I L L + K P
Sbjct: 63 YSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIA---LVGLTEAADKRPG------ 113
Query: 615 GERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTIC 674
+LSGG KQRVAIARA+ +L+ DE +LD++T N+ L I
Sbjct: 114 -----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL-------MQIW 161
Query: 675 IAHRLSTI 682
HR++ +
Sbjct: 162 EEHRVTVL 169
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 79.8 bits (197), Expect = 3e-16
Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 18/209 (8%)
Query: 481 SIEFRDVNFSYIDKHT---KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
+I F +V+++Y K T + ++N GK AIVG +GSGKST+I+ + +P
Sbjct: 2 TIRFDNVSYTY-QKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60
Query: 538 AGAIYIDGKNIN----DVDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEETI 591
G + +D I D + +R+ I +V Q P LF DT+ I +G K+++ +
Sbjct: 61 TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG--PKNFKMNL 118
Query: 592 EAAKLADLHNSIIKWPNHYETQVGERG-LKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
+ K H ++ + V + ++SGG+ +++AI + N I+V DE T+
Sbjct: 119 DEVK-NYAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 651 LDSITENNILSSLKT--ASRNKTTICIAH 677
LD ++ ++ LK+ NKT I ++H
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSH 204
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 79.0 bits (195), Expect = 3e-16
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 43/203 (21%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV-------------DLDS 555
AG ++I+G SGSGKST +R + +P+AG+I ++G+ I L
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90
Query: 556 LRRHIAIVPQDPVLF-HDTILYN-----INYGDKSKSYEETIEAAK-------LADLHNS 602
LR + +V Q L+ H T+L N ++ SK+ E IE A+ +A+ +
Sbjct: 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA--EAIERAEKYLAKVGIAEKAD- 147
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
+P H LSGG++QRVAIARA+ +++FDE TS+LD +L
Sbjct: 148 --AYPAH-----------LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKV 194
Query: 663 L-KTASRNKTTICIAHRLSTIKH 684
+ A +T + + H + +
Sbjct: 195 MQDLAEEGRTMVVVTHEMGFARD 217
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 80.9 bits (200), Expect = 3e-16
Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 41/191 (21%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
SIE ++ S+ T+ + ++++ IP+G+ VA++G SGSGK+T++R++ +G
Sbjct: 2 SIEIANIKKSF--GRTQ-VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58
Query: 541 IYIDGKNINDVDLDSLR-RHIAIVPQDPVLF-HDTILYNINYG----------------D 582
I G DV R R + V Q LF H T+ NI +G
Sbjct: 59 IRFHGT---DVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA 115
Query: 583 KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPIL 642
K E ++ A LA + Y Q LSGG+KQRVA+ARA+ IL
Sbjct: 116 KVTQLLEMVQLAHLA----------DRYPAQ-------LSGGQKQRVALARALAVEPQIL 158
Query: 643 VFDEATSSLDS 653
+ DE +LD+
Sbjct: 159 LLDEPFGALDA 169
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 78.2 bits (193), Expect = 3e-16
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 29/179 (16%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA----GAIYIDGKNINDVDLDSL 556
+LN ++ G+ +A+VG SGSGKS + P G I +DG+ + + +
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG- 61
Query: 557 RRHIAIVPQDPVL-----------FHDTIL-YNINYGDKSKSYEETIEAAKLADLHNSII 604
RHIA + Q+P +T+ E +EA L D +
Sbjct: 62 -RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLK 120
Query: 605 KWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663
K+P +LSGG QRV IA A+L P L+ DE T+ LD + + +L L
Sbjct: 121 KYP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL 168
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 78.7 bits (194), Expect = 4e-16
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 25/195 (12%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558
I ++ T P G ++G +GSGKST++RLL P+AG + + G +++ + + R
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 559 HIAIVPQD-----PVLFHDTI-LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYET 612
+A+V QD P+ D + L I + +S ++ A + D
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPH--RSLWAGDSPHDAAVVD----------RALA 123
Query: 613 QVGERGL------KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA 666
+ L LSGGE+QRV +ARA+ + +L+ DE T+ LD + L+ ++
Sbjct: 124 RTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 667 SRNKTTICIA-HRLS 680
+ T+ A H L+
Sbjct: 184 AATGVTVVAALHDLN 198
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 78.5 bits (193), Expect = 4e-16
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 14/218 (6%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PN-- 537
I +DV+ SY + ++ + A++G SG GKST +R L R + N
Sbjct: 5 ISAKDVHLSYGNYEA---LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 538 -AGAIYIDGKNI--NDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYE--ETIE 592
G I +G+NI + +DL LR+ + +V Q P F ++ N+ YG K + E I+
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
L + I W + + SGG++QR+ IARA+ +++ DE TS+LD
Sbjct: 122 QRVEESLKQAAI-W-KETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179
Query: 653 SITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690
I+ + I +L T I + H L + A
Sbjct: 180 PISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTA 217
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 77.8 bits (192), Expect = 5e-16
Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 34/199 (17%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI--DGKNINDVDLD-- 554
+ N++ T+ AG+ VA+ G SG+GKST+++ LY + P++G I + +G ++
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 555 ---SLRRH-IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKL------ADLHNSII 604
+RR I V Q F I S E + L
Sbjct: 83 EVLEVRRKTIGYVSQ----FLRVI--------PRVSALEVVAEPLLERGVPREAARARAR 130
Query: 605 KWPNHYETQVGERGLKL-----SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+ + ER L SGGE+QRV IAR + + PIL+ DE T+SLD+ +
Sbjct: 131 ELLARLN--IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 660 LSSLKTASRNKTT-ICIAH 677
+ + A I I H
Sbjct: 189 VELIAEAKARGAALIGIFH 207
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 81.1 bits (201), Expect = 7e-16
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 29/175 (16%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+EF +V+ Y + + +L+F I G +AIVG +G+GKST+++LL P +G +
Sbjct: 322 LEFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD-KSKSYEETIEA---AKLA 597
+ G+ + I Q D + + + S+ + + E A L
Sbjct: 380 KV-GETVK----------IGYFDQH----RDELDPDKTVLEELSEGFPDGDEQEVRAYLG 424
Query: 598 DLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
+ E VG LSGGEK R+ +A+ +L+ +L+ DE T+ LD
Sbjct: 425 RFGFT----GEDQEKPVG----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
Score = 77.3 bits (191), Expect = 1e-14
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 39/196 (19%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I +++ +Y + + N++ T+ G+ + +VG +G+GKST++++L EP++G +
Sbjct: 4 ITLENLSLAY---GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-----SKSYEETIEA-- 593
LR + + Q+P L T+L + G EE
Sbjct: 61 TRPK---------GLR--VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 594 ----AKLADLHNSIIKWPNH-YETQVGE--RGLK----------LSGGEKQRVAIARAIL 636
LA+L + + E + E GL LSGG ++RVA+ARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 637 KNTPILVFDEATSSLD 652
+ +L+ DE T+ LD
Sbjct: 170 EEPDLLLLDEPTNHLD 185
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 77.7 bits (191), Expect = 7e-16
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 11/220 (5%)
Query: 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--P 536
N ++ +N + H + +++ P AI+G SG GKST++R + R + P
Sbjct: 2 NNKVKLEQLNVHFGKNHAVK---DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVP 58
Query: 537 NA---GAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILY-NINYGDKSKSYEET 590
+A G I +D +I D VD S+RR + +V Q P F +Y N+ G K
Sbjct: 59 SARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR 118
Query: 591 IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
EA ++ + + + + ++ ++LSGG++QR+ IAR I +++ DE S+
Sbjct: 119 SEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASA 178
Query: 651 LDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKA 690
LD I+ I ++ T I + H + + Y A
Sbjct: 179 LDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTA 218
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 77.9 bits (192), Expect = 9e-16
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS- 555
+ +N++ +I G++V ++G SG GKST+ RLL +P G + G+++ +D
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQR 83
Query: 556 --LRRHIAIVPQD---PVLFHDTI-------LYNINYGDKSKSYEETIEAAKLADLHNSI 603
RR + +V QD V T+ L ++ D+S+ E + L +
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED 143
Query: 604 I-KWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
K P +LSGG+ QR+ IARA+ ++V DEA S+LD + + IL
Sbjct: 144 ADKLPR-----------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL 192
Query: 663 LKTASRNKTTIC--IAHRLS 680
L+ + T I H L
Sbjct: 193 LRKLQQAFGTAYLFITHDLR 212
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 76.6 bits (189), Expect = 1e-15
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 32/167 (19%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557
+FS+L+FT+ AG+++ I G +G+GK+T++R+L P+AG +Y G+ I +V +S
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYH 74
Query: 558 RHIAIVPQDPVL------FHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
+ + + P + + + +G + TI A L
Sbjct: 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGN---AATIWEA----LA----------- 116
Query: 612 TQVGERGL------KLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
QVG GL +LS G+++RVA+AR L P+ + DE ++LD
Sbjct: 117 -QVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 78.9 bits (195), Expect = 1e-15
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 25/182 (13%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
AS+ R+V +Y D I ++N I G+ V VG SG GKST++R++ + +G
Sbjct: 2 ASVTLRNVTKAYGDVV---ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG 58
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG------DKSKSYEETIE 592
++I K +NDV R + +V Q L+ H ++ N+++G K + + +
Sbjct: 59 DLFIGEKRMNDV--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQ 116
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEATSSL 651
A++ L + + +R K LSGG++QRVAI R ++ + + DE S+L
Sbjct: 117 VAEVLQLAHLL------------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
Query: 652 DS 653
D+
Sbjct: 165 DA 166
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 77.9 bits (192), Expect = 2e-15
Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 29/211 (13%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
S A I+FR+V Y DK + L+F + G+ ++G +G+GK+T +R+L P+
Sbjct: 4 SVAPIDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD 60
Query: 538 AGAIYIDGKNINDVDLDSLRRHIAIVPQ----DP--VLFHDTILYNINYGDKSKSYEETI 591
AG+I + G+ + + R+ + +VPQ DP + + +++ +G + + +
Sbjct: 61 AGSISLCGEPVPSRARHA-RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV 119
Query: 592 ----EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
E AKL N + +VGE LSGG K+R+ +ARA++ + +LV DE
Sbjct: 120 PPLLEFAKLE----------NKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEP 165
Query: 648 TSSLDSITENNILSSLKT-ASRNKTTICIAH 677
T+ LD + + L++ +R KT + H
Sbjct: 166 TTGLDPQARHLMWERLRSLLARGKTILLTTH 196
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 75.7 bits (186), Expect = 2e-15
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 23/205 (11%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I F V+ +Y+ ++ + F + G+ + G SG+GKST+++L+ P+AG I
Sbjct: 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 542 YIDGKNINDV---DLDSLRRHIAIVPQDPVLFHDTILYN------INYGDKSKSYEETIE 592
+ G +I + ++ LRR I ++ QD L D +Y+ I G +
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119
Query: 593 AA-KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
AA L + +P ++LSGGE+QRV IARA++ +L+ DE T +L
Sbjct: 120 AALDKVGLLDKAKNFP-----------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL 168
Query: 652 DSITENNILSSLKTASRNKTTICIA 676
D IL + +R T+ +A
Sbjct: 169 DDALSEGILRLFEEFNRVGVTVLMA 193
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 76.8 bits (189), Expect = 4e-15
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 25/198 (12%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----------- 550
N+++T K I+G SGSGKST++ + G I + I D
Sbjct: 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNP 103
Query: 551 -----VDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSI 603
+ LRR +++V Q P LF DTI +I +G + ++ EA KLA + +
Sbjct: 104 YSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKK-SEAKKLAKFYLNK 162
Query: 604 IKWPNHYETQVGERG-LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSS 662
+ + Y ER LSGG+K+RVAIA + IL+FDE T+ LD E+ ++
Sbjct: 163 MGLDDSYL----ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218
Query: 663 LKTASR-NKTTICIAHRL 679
+ A NKT I H +
Sbjct: 219 ILDAKANNKTVFVITHTM 236
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 73.3 bits (181), Expect = 5e-15
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 64/204 (31%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRL---LYRFFEPNA 538
IE +++ + +L+F I G + I G SG+GKS++ R L+ +
Sbjct: 1 IELENLSL-ATPDGRVLL-KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS--- 55
Query: 539 GAIYIDGKNINDVDLDSLRRHIAIVPQDPVL----FHDTILYNINYGDKSKSYEETIEAA 594
G I + + +PQ P L + ++Y
Sbjct: 56 GRIGMPE-----------GEDLLFLPQRPYLPLGTLREQLIY------------------ 86
Query: 595 KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSI 654
W LSGGE+QR+A AR +L + DEATS+LD
Sbjct: 87 ----------PW-----------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125
Query: 655 TENNILSSLKTASRNKTTICIAHR 678
+E+ + LK T I + HR
Sbjct: 126 SEDRLYQLLKELG--ITVISVGHR 147
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 75.8 bits (187), Expect = 5e-15
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS 555
KR + L+ I G V ++G +G+GKST++ + +P +G I IDG ++ +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 556 LRRHIAIVPQDPV--LFHD-TILYNINYGD---KSKSYEETIEAAKLADLHNSIIKWPNH 609
+A V QDP+ + TI N+ + K + + + + + +
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA--- 666
E ++ +R LSGG++Q +++ A L IL+ DE T++LD T ++ TA
Sbjct: 138 LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME--LTAKIV 195
Query: 667 -SRNKTTICIAHRL 679
TT+ + H +
Sbjct: 196 EEHKLTTLMVTHNM 209
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 75.4 bits (185), Expect = 6e-15
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--------FEPNAGAIYIDGKNI--NDVDL 553
+ I + +G SG GKST++R L R FE G ++ G+++ VD
Sbjct: 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFE---GHVHFLGQDVYGKGVDP 84
Query: 554 DSLRRHIAIVPQDPVLFHDTILYNINYG--------DKSKSYEETIEAAKLADLHNSIIK 605
+RR+I +V Q P F +I N+ +G D + ++ A L D
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWD------- 137
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665
+ ++ GL LSGG++QR+ IARAI +L+ DE S+LD I + +
Sbjct: 138 ---EVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194
Query: 666 ASRNKTTICIAHRL 679
++ T + H +
Sbjct: 195 LKKDYTIALVTHNM 208
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 75.9 bits (187), Expect = 6e-15
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 23/213 (10%)
Query: 478 SNASIEFRDVNFSYID---KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
N I+ ++V++ Y K ++N + G+ + I+G +GSGKSTI + +
Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60
Query: 535 EPNAGAIYIDGKNINDV-DLDSLRRHIAIVPQDP-------VLFHDTILYNINYGDKSKS 586
P+ G +Y+DG + +D +L +R +V Q+P ++ D N G +
Sbjct: 61 IPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEE 120
Query: 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
E ++ + +K YE + L LSGG+KQRVAIA + ++FDE
Sbjct: 121 IRERVDES---------LKKVGMYEYRRHAPHL-LSGGQKQRVAIAGILAMRPECIIFDE 170
Query: 647 ATSSLDSITENNILSSLKTASRNK--TTICIAH 677
T+ LD +++++K ++ T I I H
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 78.4 bits (193), Expect = 6e-15
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN---DVDLDSLRR 558
++F + G+++++VG SGSGKST R L R E G I +G+ I+ L +LRR
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR 401
Query: 559 HIAIVPQDPVLFHD---TILYNINYGDKSKSYEETIEAAK-LADLHNSIIKWPNHYETQV 614
I + QDP D T+ +I + AA +A L + P H
Sbjct: 402 DIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461
Query: 615 GERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
E SGG++QR+ IARA+ N +++ DEA S+LD
Sbjct: 462 HE----FSGGQRQRICIARALALNPKVIIADEAVSALD 495
Score = 63.7 bits (155), Expect = 2e-10
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 32/212 (15%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
VL N +I F ++ NL+F++ G+++AIVG SGSGKS L R
Sbjct: 12 VLAVENLNIAFMQ------EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL 65
Query: 534 FEPNAGAIYIDG-----KNINDVDL----DSLRRH-----IAIVPQDPV-----LFH--D 572
E G + D ++ ++L + RH +A++ Q+P+ +F +
Sbjct: 66 LEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGE 125
Query: 573 TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632
I +I + E +EA ++ D ++ P +T + +LSGG +QRV IA
Sbjct: 126 QIAESIRLHQGASREEAMVEAKRMLDQ----VRIPEA-QTILSRYPHQLSGGMRQRVMIA 180
Query: 633 RAILKNTPILVFDEATSSLDSITENNILSSLK 664
A+ +L+ DE T++LD + IL +K
Sbjct: 181 MALSCRPAVLIADEPTTALDVTIQAQILQLIK 212
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 77.8 bits (192), Expect = 7e-15
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 41/212 (19%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKST----IIRLLYRFFEPNAGAIYIDGK---NIN 549
+ N++FT+ G+++ +VG SGSGKST ++RL+ + G I+ DG+ N+N
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-----NSQGEIWFDGQPLHNLN 353
Query: 550 DVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNH 609
L +R I +V QDP N + I L +H +
Sbjct: 354 RRQLLPVRHRIQVVFQDP-----------NSSLNPRLNVLQIIEEGLR-VHQPTLS-AAQ 400
Query: 610 YETQV----GERGL----------KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
E QV E GL + SGG++QR+AIARA++ +++ DE TSSLD
Sbjct: 401 REQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV 460
Query: 656 ENNILSSLKT--ASRNKTTICIAHRLSTIKHL 685
+ IL+ LK+ + I+H L ++ L
Sbjct: 461 QAQILALLKSLQQKHQLAYLFISHDLHVVRAL 492
Score = 75.5 bits (186), Expect = 4e-14
Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 58/249 (23%)
Query: 469 NALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKS---- 524
PL L N S+ FR + + + ++++ I AG+++A+VG SGSGKS
Sbjct: 1 MTQPL-LAIENLSVAFRQ------QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTAL 53
Query: 525 TIIRLLYRFFEPN------AGAIYIDGKNINDVDLDSLRR----HIAIVPQDPVLFHDTI 574
+I+RLL P+ +G I G+++ +LR IA++ Q+P++
Sbjct: 54 SILRLL-----PSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV----- 103
Query: 575 LYNINYGDKSKSYEETIEA--AKLADLHNSIIKWPNHYET-----QVGERGLK------- 620
S + T+E ++ LH + + E +VG R
Sbjct: 104 ---------SLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP 154
Query: 621 --LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIA 676
LSGGE+QRV IA A+L +L+ DE T++LD + IL L+ + N + I
Sbjct: 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT 214
Query: 677 HRLSTIKHL 685
H LS ++ L
Sbjct: 215 HNLSIVRKL 223
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 75.7 bits (186), Expect = 7e-15
Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 29/211 (13%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
SN +I+ V+ SY DK + ++L+FTI G+ ++G +G+GKSTI R+L P+
Sbjct: 1 SNVAIDLVGVSKSYGDK---VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57
Query: 538 AGAIYIDGKNINDVDLDSLRRHIAIVPQ----DP--VLFHDTILYNINYGDKSKSYEETI 591
G I + G+ + R I +VPQ DP + + +++ +G ++ E I
Sbjct: 58 RGKITVLGEPV-PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI 116
Query: 592 ----EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
E A+L E++ R LSGG K+R+ +ARA++ + +L+ DE
Sbjct: 117 PSLLEFARL--------------ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162
Query: 648 TSSLDSITENNILSSLKT-ASRNKTTICIAH 677
T+ LD + I L++ +R KT + H
Sbjct: 163 TTGLDPHARHLIWERLRSLLARGKTILLTTH 193
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 73.6 bits (181), Expect = 8e-15
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 21/161 (13%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557
+F L+FT+ AG+++ + G +G GK+T++R+L P++G + +G + + D
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPH 72
Query: 558 RHIAIVPQDPVLFHD-TILYNINY-----GDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
R+I + P L + + L N+++ G ++ E+ + A L + P
Sbjct: 73 RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL----PAAQ- 127
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
LS G+++R+A+AR L P+ + DE T++LD
Sbjct: 128 ---------LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 74.7 bits (183), Expect = 1e-14
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 45/219 (20%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE--PNA---GA 540
DVN Y DK + N+N + G A++G SG GK+T +R + R + P A G
Sbjct: 9 DVNIYYGDKQAVK---NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR 65
Query: 541 IYIDGKNIND--VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLAD 598
I +DG++I VD ++RR + +V Q P F ++ + + KLA
Sbjct: 66 ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVF-----------DNVVAGLKLAG 114
Query: 599 LHNSIIKWPNHYETQVGERGLK------------------LSGGEKQRVAIARAILKNTP 640
+ + + +V ER L+ LSGG++QR+ IARA+
Sbjct: 115 IRD------RDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPE 168
Query: 641 ILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRL 679
IL+ DE TS+LD + I + + T I + H +
Sbjct: 169 ILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNM 207
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 73.6 bits (181), Expect = 1e-14
Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 30/185 (16%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
++F + G+ ++G +G+GK+T I++L +P +G + G ++ + +RR I
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76
Query: 562 IVPQDPVLFHDTIL------------YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNH 609
IV QD + D L Y + ++ + +E ++ L + + ++K
Sbjct: 77 IVFQDLSV--DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK---- 130
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR- 668
SGG ++R+ IAR+++ +L DE T LD T ++ ++
Sbjct: 131 ----------TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180
Query: 669 NKTTI 673
TI
Sbjct: 181 FGMTI 185
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 74.4 bits (183), Expect = 1e-14
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 476 TTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535
S+ + R+V+F + + L+ T PAGK ++G +GSGKST++++L R
Sbjct: 6 NHSDTTFALRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62
Query: 536 PNAGAIYIDGKNINDVDLDSLRRHIAIVPQD-PVLFHDTILYNINYG------------- 581
P+ G I +D + + + R +A +PQ P T+ + G
Sbjct: 63 PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGA 122
Query: 582 -DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
D+ K EE I L L + ++ LSGGE+QR IA + +++
Sbjct: 123 ADREK-VEEAISLVGLKPLAHRLVD--------------SLSGGERQRAWIAMLVAQDSR 167
Query: 641 ILVFDEATSSLDSITENNILSSLKTASRNK--TTICIAH 677
L+ DE TS+LD + ++L+ + S+ + T I + H
Sbjct: 168 CLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 72.9 bits (180), Expect = 3e-14
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+E +++ Y ++ + G+ VA++G +G+GK+T+++ + P +G I
Sbjct: 4 LEVENLSAGYGKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 542 YIDGKNINDVDLDSL-RRHIAIVPQDPVLFHD-TILYNINYG----DKSKSYEETIEAA- 594
DG++I + R IA VP+ +F T+ N+ G ++ E +E
Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVY 120
Query: 595 ----KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
+L + N R LSGGE+Q +AIARA++ +L+ DE +
Sbjct: 121 ELFPRLKERRNQ--------------RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 166
Query: 651 L 651
L
Sbjct: 167 L 167
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 74.3 bits (183), Expect = 3e-14
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 20/193 (10%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
+++F IP G+ V +G +G+GKST +++L P +G + ++GK+ + LR
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGL 101
Query: 562 IVPQDPVLF-----HDTILYN-INYGDKSKSYEETI-EAAKLADLHNSIIKWPNHYETQV 614
++ Q L+ D++ + Y + E + ++ DL +KWP
Sbjct: 102 VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDL-EGFLKWPVR----- 155
Query: 615 GERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRNKTT 672
KLS G++ R +A A+L +L DE T LD + NI LK R T
Sbjct: 156 -----KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATV 210
Query: 673 ICIAHRLSTIKHL 685
+ H I L
Sbjct: 211 LLTTHIFDDIATL 223
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 72.5 bits (178), Expect = 5e-14
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 27/201 (13%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
+L N S FR + T ++FT+ G+++AI+G +GSGKST+ ++L
Sbjct: 4 LLEVRNLSKTFRY-RTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62
Query: 534 FEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD------PVLFHDTIL-------YNINY 580
EP +G I I+ ++ D + I ++ QD P L IL ++
Sbjct: 63 IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEP 122
Query: 581 GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
+ K ET+ L H + +P+ L+ G+KQRVA+ARA++
Sbjct: 123 EQRRKQIFETLRMVGLLPDHANY--YPHM-----------LAPGQKQRVALARALILRPK 169
Query: 641 ILVFDEATSSLDSITENNILS 661
I++ DEA +SLD + +++
Sbjct: 170 IIIADEALASLDMSMRSQLIN 190
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 69.8 bits (172), Expect = 1e-13
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 42/162 (25%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LD 554
K +++F + AG+ V I G G+G++ + L+ P +G I +DGK + D
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRD 71
Query: 555 SLRRHIAIVPQDPV---LFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHY 610
++R IA VP+D L D ++ NI L+ L
Sbjct: 72 AIRAGIAYVPEDRKREGLVLDLSVAENIA----------------LSSL----------- 104
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
LSGG +Q+V +AR + ++ +L+ DE T +D
Sbjct: 105 ----------LSGGNQQKVVLARWLARDPRVLILDEPTRGVD 136
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 74.5 bits (183), Expect = 1e-13
Identities = 54/213 (25%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 482 IEFRDVNFSY--IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
I+ R+V+ Y +D+ + N++ + G+ IVG SG+GK+T+ +++ EP +G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 540 AIYIDGKNIND--VDLDSLR--------RHIAIVPQDPVLF-HDTILYNINYGDKSKSYE 588
+ + + D VD+ R+I I+ Q+ L+ H T+L N+ ++ E
Sbjct: 340 EVNV---RVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLT---EAIGLE 393
Query: 589 ETIEAAKLADLHN-SIIKWPNHYETQVGER-GLKLSGGEKQRVAIARAILKNTPILVFDE 646
E A++ + ++ + ++ ++ +LS GE+ RVA+A+ ++K I++ DE
Sbjct: 394 LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE 453
Query: 647 ATSSLDSITENNILSSLKTASR--NKTTICIAH 677
T ++D IT+ ++ S+ A +T I ++H
Sbjct: 454 PTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486
Score = 73.3 bits (180), Expect = 2e-13
Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 62/246 (25%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL--YR 532
+ N + +F K + N++FTI G+ + I+G SG+GKS ++ +L
Sbjct: 1 IEVKNLTKKFDG----------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50
Query: 533 FFEPNAGAI-----------YID------------GKNINDVDLD----------SLRRH 559
+EP +G I Y++ G + ++D +R+
Sbjct: 51 QYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKR 110
Query: 560 IAIVPQDPVLFH--DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
IAI+ Q + DT+L N+ + YE + DL I+ Q+ R
Sbjct: 111 IAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDL----IE-----MVQLSHR 161
Query: 618 ----GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK--T 671
LSGGEKQRV +AR + K + + DE T +LD T + ++L+ A + +
Sbjct: 162 ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIS 221
Query: 672 TICIAH 677
+ +H
Sbjct: 222 MVLTSH 227
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 70.6 bits (173), Expect = 1e-13
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 24/164 (14%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN---AGAIYIDGKNINDVDLDS 555
+ +N+NFTI G+ V ++G SG GKST++ + G ++++ + ++ L +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74
Query: 556 LRRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQV 614
+R I I+ QD +LF H ++ N+ + + T++ + N+ + +
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLF-----ALPATLKGNARRNAANAAL-------ERS 122
Query: 615 GERGL------KLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
G G LSGG++ RVA+ RA+L L+ DE S LD
Sbjct: 123 GLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 70.9 bits (174), Expect = 1e-13
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 35/175 (20%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI--DGKNINDVDLD-- 554
+ N++ ++ AG+ V + G SGSGKST++R LY + P+ G I + +G+ ++ V +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 555 ---SLRRH--------IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSI 603
+RR + ++P+ L D + + ++ + AK ADL +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSAL--DVVAEPL----LARGVPREVARAKAADLLTRL 139
Query: 604 IKWPNHYETQVGERGLKL-----SGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+ ER L SGGE+QRV IAR + + PIL+ DE T+SLD+
Sbjct: 140 ---------NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 71.0 bits (174), Expect = 1e-13
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 24/200 (12%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS--- 555
+ N++F+I G+ +AIVG SGSGKST++ LL P +G + +G+ ++ + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 556 LR-RHIAIVPQDPVLFHD-TILYN------INYGDKSKSYEETIEAAKLADLHNSIIKWP 607
LR + + + Q L D T L N I ++ +E L
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-------- 135
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667
E + R +LSGGE+QRVAIARA++ N +++ DE T +LD+ ++I L +
Sbjct: 136 ---EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192
Query: 668 RNKTT--ICIAHRLSTIKHL 685
R + T + + H L K +
Sbjct: 193 RLQGTAFLVVTHDLQLAKRM 212
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 71.1 bits (175), Expect = 1e-13
Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS 555
+++ ++++ + +G+ V ++G +G+GK+T ++ P++G I +D ++I + +
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK 75
Query: 556 -LRRHIAIVPQDPVLFHD-TILYNI------NYGDKSKSYEETIEAAKLADLHNSIIKWP 607
R I +PQ+ +F T+ NI D K+ + A L + H + ++
Sbjct: 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-- 133
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+ LSGGE++RV IARA+ N ++ DE + +D I +I
Sbjct: 134 -------DSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI 178
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 71.7 bits (175), Expect = 1e-13
Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 6/190 (3%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY-----IDGKNI-ND 550
K + ++ PA +++G +GSGK+T +R L R + +G Y + G++I N
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 551 VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHY 610
D+ RR + ++ Q P F +I+ N+ G ++ E +A + + +
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV 153
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK 670
+ ++ + +LSGG++Q + +AR + N +L+ DE TS+LD T I +++ +
Sbjct: 154 KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213
Query: 671 TTICIAHRLS 680
T I + H L+
Sbjct: 214 TVIIVTHNLA 223
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 71.6 bits (175), Expect = 2e-13
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 31/216 (14%)
Query: 486 DVNFSYIDK--HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG---- 539
+V+++Y K + +N + T K ++G +GSGKST+I+L G
Sbjct: 11 NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70
Query: 540 ---AIYIDGKNINDVDLDSLRRHIAIVPQDP--VLFHDTILYNINYG------DKSKSYE 588
AI + K I +V LR+ I +V Q P LF +TI +I +G +K ++Y+
Sbjct: 71 GDYAIPANLKKIKEVK--RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK 128
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
+ E KL L P Y V +LSGG+K+RVA+A I + LV DE T
Sbjct: 129 KVPELLKLVQL-------PEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 649 SSLDSITENNILSSLKTASRN--KTTICIAHRLSTI 682
LD E + ++ + ++ K I + H + +
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQV 214
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 70.9 bits (173), Expect = 2e-13
Identities = 53/220 (24%), Positives = 103/220 (46%), Gaps = 21/220 (9%)
Query: 482 IEFRDVNFSYI--DKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
I+F VN++Y R +++ + G A++G +GSGKST+++ L +P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 540 AIYIDGKNINDV----DLDSLRRHIAIVPQDP--VLFHDTILYNINYGDK----SKSYEE 589
+ + ++ ++ +R+ + +V Q P LF +T+L ++ +G + K E
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
I A KL + + W + +LSGG+ +RVAIA + +LV DE T+
Sbjct: 122 KIAAEKLEMVGLADEFWE--------KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA 173
Query: 650 SLDSITENNILSSLKTASRN-KTTICIAHRLSTIKHLLGY 688
LD ++ ++ ++ +T + + H + + Y
Sbjct: 174 GLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADY 213
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 73.3 bits (180), Expect = 2e-13
Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 458 MLKEP-TIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKR---IFSNLNFTIPAGKSV 513
L+ P KN L EF+D+ S+ + + NLN I G V
Sbjct: 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVV 412
Query: 514 AIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ--DPVLFH 571
A+VG SG+GK+T++R++ + Y +V +++ A++P +P
Sbjct: 413 AVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS---ALIPGEYEPEFGE 469
Query: 572 DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAI 631
TIL ++ K+ +E A L ++++ Y + E LS G+K+R +
Sbjct: 470 VTILEHL--RSKTGDLNAAVEILNRAGLSDAVL-----YRRKFSE----LSTGQKERAKL 518
Query: 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK--TTICIAHRLSTIKHL 685
A+ + + +L+ DE + LD +T + + +R T I + HR L
Sbjct: 519 AKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNAL 574
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 71.3 bits (175), Expect = 2e-13
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 37/229 (16%)
Query: 482 IEFRDVNFSYIDKHTKRIFS---NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
I+ +++ + +K N++ I G+ +AI+G +GSGK+T I L P+
Sbjct: 3 IKVKNIVKIF-NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 539 GAIYIDGKNIND--------VDLDS----------------LRRHIAIVPQ--DPVLFHD 572
G I K+ + L+ +RR + +V Q + LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 573 TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632
TI +I +G S + EA K A + ++ Y + +LSGG+K+RVA+A
Sbjct: 122 TIEKDIIFGPVSMGVSKE-EAKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRVALA 177
Query: 633 RAILKNTP-ILVFDEATSSLDSITENNILSSLKTASRN-KTTICIAHRL 679
IL P LVFDE T+ LD IL ++ KT I + H L
Sbjct: 178 -GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 71.1 bits (174), Expect = 3e-13
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Query: 514 AIVGGSGSGKSTIIRLLYRFFE--PN---AGAIYIDGKNINDVDLDS--LRRHIAIVPQD 566
AI+G SG GKST +R + R + P+ GA+ DG++I D LR+ I +V Q
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 567 PVLFHDTILYNINYGDK------SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLK 620
P F +I NI YG + K EE +E + L + + W + ++ + L
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKS----LRKAAL-W-DEVSDRLDKNALG 182
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
LSGG++QR+ +AR + IL+ DE TS+LD
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 70.1 bits (172), Expect = 3e-13
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 25/167 (14%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K ++N T+ +G+ + ++G SG GK+T++ L+ F G+I +DGK +
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG---PGA 70
Query: 557 RRHIAIVPQDPVLFH-DTILYNINYG------DKSKSYEETIEAAKLADLHNSIIKWPNH 609
R +V Q+ L + N+ +G +K + E + K L +
Sbjct: 71 ER--GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA------- 121
Query: 610 YETQVGERGL-KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
+R + +LSGG++QRV IARA+ N +L+ DE +LD+ T
Sbjct: 122 -----EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 71.3 bits (175), Expect = 4e-13
Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 50/239 (20%)
Query: 472 PLVLTTSNASIEFRD--VNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRL 529
PL ++A ++ +D V FS D + ++LNF++ AG+++ IVG SGSGKS
Sbjct: 3 PLAQQQADALLDVKDLRVTFSTPDGDVTAV-NDLNFSLRAGETLGIVGESGSGKSQTAFA 61
Query: 530 LYRFFEPN---AGAIYIDGK---NINDVDLDSLR-RHIAIVPQDP--------------- 567
L N G+ +G+ N+ + +L+ LR I+++ QDP
Sbjct: 62 LMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM 121
Query: 568 -VL-FHDTILYNINYGDKSKSYEETI---EAAKLADLHNSIIKWPNHYETQVGERGLKLS 622
VL H + K++++EE++ +A K+ + + +P+ + S
Sbjct: 122 EVLMLHKGM-------SKAEAFEESVRMLDAVKMPEARKRMKMYPHEF-----------S 163
Query: 623 GGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRL 679
GG +QRV IA A+L +L+ DE T++LD + I++ L R N I I H L
Sbjct: 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 69.6 bits (170), Expect = 5e-13
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 13/203 (6%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I +V++SY D N+N I G+ + I+G +GSGKST+ L P G +
Sbjct: 2 IRLENVSYSYPDGTPA--LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 542 YIDGKNINDVD-LDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEETIEAAKLAD 598
+ G + D L +R+ + IV Q+P T+ ++ +G ++ IE K D
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCL-PPIEIRKRVD 118
Query: 599 LHNSIIKWPNHYETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITEN 657
+ I + R K LSGG+ Q VA+A + L+FDE TS LD +
Sbjct: 119 RALAEIGLEKYR-----HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 658 NILSSLKTASRN-KTTICIAHRL 679
+L +K KT + I H L
Sbjct: 174 AVLERIKKLHEKGKTIVYITHNL 196
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 70.1 bits (172), Expect = 6e-13
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 25/181 (13%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562
+NF + G+ +G +G+GK+T IR+L P +G + G ++ + +RR I I
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGI 70
Query: 563 VPQDPVLFHDTI----------LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYET 612
VPQ + D LY + + + EE +E +L + + +
Sbjct: 71 VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG------- 123
Query: 613 QVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTT 672
SGG ++R+ IA +++ +L DE T+ LD T I ++ T
Sbjct: 124 -------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 673 I 673
I
Sbjct: 177 I 177
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 68.9 bits (168), Expect = 9e-13
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 16/193 (8%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
+ NL IP G AI+G +G GKST++R L R P G +++DG++I +
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79
Query: 557 RRHIAIVPQDPVLFHDTILYNI----NYGDK---SKSYEETIEAAKLADLHNSIIKWPNH 609
R I ++ Q+ D + + Y + ++ +E EA A I H
Sbjct: 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI----TH 135
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN 669
Q + LSGG++QR IA + + T I++ DE T+ LD + ++L L +R
Sbjct: 136 LADQSVD---TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
Query: 670 K--TTICIAHRLS 680
K T + H L+
Sbjct: 193 KGYTLAAVLHDLN 205
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 71.1 bits (175), Expect = 9e-13
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 39/203 (19%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLL-----YRFFEPNAGAIYIDG-----KNINDV 551
N++ + AG+ V++ G +G+GKST++++L + +E G I +G NI D
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE---GEIIFEGEELQASNIRD- 78
Query: 552 DLDSLRRHIAIVPQDPVLFHD-TILYNINYGDKSKS-----YEE-TIEAAK-LADLHNSI 603
+ R IAI+ Q+ L + ++L NI G++ Y+ + A K LA L I
Sbjct: 79 ---TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI 135
Query: 604 IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL-DSITEN--NIL 660
+ T VG L G++Q V IA+A+ K +L+ DE T+SL +S T +I+
Sbjct: 136 -----NPATPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII 186
Query: 661 SSLKTASRNKTTICIAHRLSTIK 683
LK + I I+H+L+ +K
Sbjct: 187 RDLK--AHGIACIYISHKLNEVK 207
Score = 52.2 bits (126), Expect = 8e-07
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 27/187 (14%)
Query: 484 FRDVNFSYIDK---HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE-PNAG 539
N + D H KR+ +++F++ G+ + I G G+G++ +++ L+ + G
Sbjct: 260 LEVRNLTAWDPVNPHIKRV-DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEG 318
Query: 540 AIYIDGKNIN-DVDLDSLRRHIAIVPQD-------PVLFHDTILYNINYGDKSKSYEETI 591
I+IDGK + ++ + IA+VP+D PV+ + NI + +
Sbjct: 319 EIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGSR 375
Query: 592 --EAAKLADLHNSI----IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645
+AA+L + SI +K E + +LSGG +Q+ +A+ +L N IL+ D
Sbjct: 376 IDDAAELKTILESIQRLKVKTA-SPELAIA----RLSGGNQQKAVLAKCLLLNPKILILD 430
Query: 646 EATSSLD 652
E T +D
Sbjct: 431 EPTRGID 437
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 68.3 bits (168), Expect = 1e-12
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS 555
+++ + ++ ++ G+ V ++G +G+GK+T ++ +P++G I +DG++I + +
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 556 -LRRHIAIVPQDPVLFHD-TILYNI----NYGDKSKSYEETIEAAKLADLHNSIIKWPNH 609
R I +PQ+ +F T+ NI SK E L + H + ++
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR---- 127
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+ LSGGE++RV IARA+ N L+ DE + +D I +I
Sbjct: 128 -----KSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 72.0 bits (176), Expect = 1e-12
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 15/182 (8%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562
LN T + A +G +G+GK+T + +L P +G + + GK+I + +LD++R+ + +
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 563 VPQDPVLFH-----DTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
PQ +LFH + IL+ K +S+EE A L + + E
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQL--KGRSWEE-------AQLEMEAMLEDTGLHHKRNEE 1058
Query: 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
LSGG ++++++A A + + ++V DE TS +D + +I L +T I H
Sbjct: 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118
Query: 678 RL 679
+
Sbjct: 1119 HM 1120
Score = 30.4 bits (68), Expect = 6.0
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 41/161 (25%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK----NINDV-------------- 551
G+ ++G +G+GK+T ++L +G + GK NI+DV
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAID 2024
Query: 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
DL + R H+ + + + + I N+ +S ++ A +LA +
Sbjct: 2025 DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL--SLYADRLAGTY----------- 2071
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
SGG K++++ A A++ P+++ DE T+ +D
Sbjct: 2072 ----------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 70.9 bits (174), Expect = 1e-12
Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 31/233 (13%)
Query: 465 KNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKS 524
+ A PL + R ++ Y + ++FT+ AG+ A++GG+G+GKS
Sbjct: 3 TSDTTAPPL--------LCARSISKQY---SGVEVLKGIDFTLHAGEVHALLGGNGAGKS 51
Query: 525 TIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH---IAIVPQDPVLFHD-TILYNINY 580
T+++++ P++G + I G L + H I +VPQ+P+LF + ++ NI +
Sbjct: 52 TLMKIIAGIVPPDSGTLEIGGNPC--ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF 109
Query: 581 GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
G + LA L + ++ G L ++Q V I R +++++
Sbjct: 110 GLPKRQASMQKMKQLLAALGCQL-----DLDSSAG----SLEVADRQIVEILRGLMRDSR 160
Query: 641 ILVFDEATSSLDSITENNILSSLKTASRNKTTIC-IAHRLSTIKHLLGYKAHR 692
IL+ DE T+SL + S ++ I I+H+L I+ L A R
Sbjct: 161 ILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQL----ADR 209
Score = 61.2 bits (149), Expect = 1e-09
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 15/196 (7%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LDSLRR 558
F N++ + AG+ + + G G+G++ + LY G I ++GK IN + L R
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338
Query: 559 HIAIVPQD---PVLFHDTILY----NINYGDKSKSYEETIEAAKLADLHNSI-IKWPNHY 610
+ +P+D L+ D L + + + + E A L ++ IK+ NH
Sbjct: 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF-NHA 397
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT-ASRN 669
E LSGG +Q+V IA+ + + +L+ DE T +D N+I +++ A++N
Sbjct: 398 EQAAR----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN 453
Query: 670 KTTICIAHRLSTIKHL 685
+ I+ L I+ +
Sbjct: 454 VAVLFISSDLEEIEQM 469
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 68.0 bits (166), Expect = 1e-12
Identities = 44/171 (25%), Positives = 85/171 (49%), Gaps = 26/171 (15%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDS- 555
+R+ +++ T+ +G+ V ++G +G+GK+T ++ +AG I ID ++I+ + L +
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR 75
Query: 556 LRRHIAIVPQDPVLFHDTILYN-----------INYGDKSKSYEETIEAAKLADLHNSII 604
RR I +PQ+ +F +Y+ ++ + E +E + L +S+
Sbjct: 76 ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM- 134
Query: 605 KWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
G LSGGE++RV IARA+ N ++ DE + +D I+
Sbjct: 135 -------------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 70.3 bits (173), Expect = 2e-12
Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 25/201 (12%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL-DSL 556
+ +++F AG+ A++G +G+GKST++++L ++P+AG+I IDG+ + +L
Sbjct: 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77
Query: 557 RRHIAIVPQDPVLFHD-TILYNINYG---------DKSKSYEETIEAAKLADLHNSIIKW 606
+AI+ Q+ L + T+ N+ G ++ E +L L I
Sbjct: 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEA--REQLEHLGVDID-- 133
Query: 607 PNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA 666
P+ T + LS G++Q V IA+A+ +N ++ FDE TSSL S E L +
Sbjct: 134 PD---TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSL-SAREIEQLFRVIRE 185
Query: 667 SR--NKTTICIAHRLSTIKHL 685
R + + ++HR+ I L
Sbjct: 186 LRAEGRVILYVSHRMEEIFAL 206
Score = 43.7 bits (104), Expect = 3e-04
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 37/171 (21%)
Query: 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN-DVDLDSLRRHIAI 562
+F++ AG+ V + G G+G+S +++LLY AG +Y+DGK I+ D++R I +
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332
Query: 563 VPQD-------PVLFHDTILYNINYGDKSKS----------YEETIEAAKLADLHNSI-- 603
P+D PV ++ NIN + +E A+ AD I
Sbjct: 333 CPEDRKAEGIIPVH---SVADNINISARRHHLRAGCLINNRWE-----AENADRF--IRS 382
Query: 604 --IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
IK P+ E + LSGG +Q+ + R + ++ +++ DE T +D
Sbjct: 383 LNIKTPSR-EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 67.2 bits (165), Expect = 2e-12
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 34/179 (18%)
Query: 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY 542
E ++N Y H I ++ +P G+ ++G +G GK+T+++ L +G+I
Sbjct: 2 EVSNLNVYYGQSH---ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIR 58
Query: 543 IDGKNINDVDLDSL------RRHIAIVPQDPVLF-HDTILYNINYGDKSKSYEETIEAAK 595
+DG+ D+ L R IA VPQ +F T+ N+ G A
Sbjct: 59 LDGE-----DITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTG-----------LAA 102
Query: 596 LADLHNSIIKWPNHYE------TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
L I YE +G RG LSGG++Q++AIARA++ +L+ DE T
Sbjct: 103 LPRRSRKIP--DEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 67.0 bits (164), Expect = 2e-12
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 38/219 (17%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558
+N++ T+P ++G +G+GKST+++++ P +G I DG DL +
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74
Query: 559 HIAIVP-------QDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
I P ++ + H T+L E + DL N+ K
Sbjct: 75 LIESPPLYENLTARENLKVHTTLL--------GLPDSRIDEVLNIVDLTNTGKK------ 120
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKT 671
+ + S G KQR+ IA A+L + +L+ DE T+ LD I + +++
Sbjct: 121 -----KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI 175
Query: 672 TICI-AHRLSTIKHL-----------LGYKAHRKTSTNL 698
T+ + +H LS ++ L LGY+ S NL
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEGVLGYQGKINKSENL 214
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 66.6 bits (163), Expect = 4e-12
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 30/207 (14%)
Query: 493 DKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD 552
++FTI G+ V +G +G+GK+T +++L +P +G + + G +
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-LVPWKR 88
Query: 553 LDSLRRHIAIV------------PQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLH 600
R I +V D I Y++ K +E E L +L
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI-YDLPPARFKKRLDELSELLDLEELL 147
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
++ ++ +LS G++ R IA A+L IL DE T LD + + NI
Sbjct: 148 DTPVR--------------QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193
Query: 661 SSLKTASRN-KTTICI-AHRLSTIKHL 685
+ LK +R TT+ + +H + I+ L
Sbjct: 194 NFLKEYNRERGTTVLLTSHYMKDIEAL 220
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 65.7 bits (161), Expect = 4e-12
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 33/185 (17%)
Query: 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA---GAIYIDGKNIND 550
+ I + + + G+ V ++G GSG ST+++ L E N G I+ +G
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP-YK 75
Query: 551 VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHY 610
+ I V ++ V H L + ET++ A + +
Sbjct: 76 EFAEKYPGEIIYVSEEDV--HFPTL----------TVRETLDFALRCKGNEFV------- 116
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-- 668
RG+ SGGE++RV+IA A++ +L +D +T LDS T IL ++T +
Sbjct: 117 ------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL 168
Query: 669 NKTTI 673
TT
Sbjct: 169 KTTTF 173
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 66.5 bits (163), Expect = 5e-12
Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 40/181 (22%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLDSLRRHI 560
L+ + AG+ + +VG +G+GKST LL R P +G+I G+ + L RH
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71
Query: 561 AIVPQD-------PVLFHDTILY---NINYGDKSKSYEETIEAAKLAD-LHNSIIKWPNH 609
A + Q PV F L+ + + E EA L D L S+
Sbjct: 72 AYLSQQQTPPFAMPV-FQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV------ 124
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTP-------ILVFDEATSSLDSITENNILSS 662
Q LSGGE QRV +A +L+ P +L+ DE +SLD + + L
Sbjct: 125 --NQ-------LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-VAQQAALDR 174
Query: 663 L 663
L
Sbjct: 175 L 175
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 66.3 bits (163), Expect = 5e-12
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 40/214 (18%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH- 559
+++F++ G+ ++G +G+GK+T+ L+ F P +G++ DG++I + + R
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76
Query: 560 IAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPN-HYETQVGER 617
I Q P LF + T+L E + A A + ++ E + ER
Sbjct: 77 IGRTFQIPRLFPELTVL-------------ENVMVAAQARTGSGLLLARARREEREARER 123
Query: 618 --------GL---------KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
GL +LS G+++R+ IARA+ + +L+ DE + L + E L
Sbjct: 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEEL 182
Query: 661 SSL--KTASRNKTTICIAHRLSTIKHLLGYKAHR 692
+ L + R T + + H + + L A R
Sbjct: 183 AELIRELRERGITVLLVEHDMDVVMSL----ADR 212
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 66.3 bits (162), Expect = 6e-12
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
+R+ S+++ + GK + ++G +G+GKST++R++ P+ G I +GK L
Sbjct: 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---------L 67
Query: 557 RRHIAIVPQDPVLFHDTIL-------YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNH 609
R I VPQ L+ DT L + G K + ++ + L ++ ++
Sbjct: 68 R--IGYVPQK--LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQ---- 119
Query: 610 YETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
KLSGGE QRV +ARA+L +LV DE T +D
Sbjct: 120 ----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 65.2 bits (159), Expect = 6e-12
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 13/155 (8%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558
+FS L+FT+ AG+++ + G +GSGK+T++R+L P AG + ++G ++ DS+ R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIAR 73
Query: 559 HIA-IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
+ + + ++L N+ + S E+ EA L N P
Sbjct: 74 GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGL-NGFEDRPVAQ------- 125
Query: 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
LS G+++RVA+AR +L P+ + DE T++LD
Sbjct: 126 ---LSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 65.3 bits (160), Expect = 1e-11
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 39/214 (18%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL-RRHI 560
+++ + G+ V ++G +G+GK+T+ L+ F++P++G + G++I + + R I
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81
Query: 561 AIVPQDPVLFHD-TILYNI--------------NYGDKSKSYEETIEAAKLADLHNSIIK 605
A Q LF T+L N+ K E E A+ +++
Sbjct: 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR------ELLE 135
Query: 606 W---PNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITE----NN 658
+ + G LS G+++R+ IARA+ +L+ DE + L + E
Sbjct: 136 FVGLGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGL-NPEETEELAE 190
Query: 659 ILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692
++ L+ T + I H + + L A R
Sbjct: 191 LIRELR-DRGGVTILLIEHDMKLVMGL----ADR 219
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 64.9 bits (159), Expect = 2e-11
Identities = 58/235 (24%), Positives = 95/235 (40%), Gaps = 51/235 (21%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKR--------------IFSNLNFTIPAGKSVAIVGGS 519
V+ SN S +FR + + +++F I G+ V I+G +
Sbjct: 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHN 62
Query: 520 GSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI-VPQDPVLFHDTILYNI 578
G+GKST+++L+ ++P +G + + GK + L I + DP L T NI
Sbjct: 63 GAGKSTLLKLIAGIYKPTSGKVKVTGK------VAPL---IELGAGFDPEL---TGRENI 110
Query: 579 -------NYGDK--SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629
K + +E IE A+L D + +K Y S G R+
Sbjct: 111 YLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVK---TY-----------SSGMYARL 156
Query: 630 AIARAILKNTPILVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIK 683
A + A IL+ DE + D+ + L L +NKT + ++H L IK
Sbjct: 157 AFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIK 211
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 63.7 bits (156), Expect = 2e-11
Identities = 48/202 (23%), Positives = 78/202 (38%), Gaps = 45/202 (22%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLD 554
K I +N TI G+ A++G +GSGKST+ + + +E G I G++I D+ +
Sbjct: 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72
Query: 555 S-LRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQ 613
R I + Q P I K AD
Sbjct: 73 ERARLGIFLAFQYPP---------------------EIPGVKNADFLRY----------- 100
Query: 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD----SITENNILSSLKTASRN 669
V E SGGEK+R I + +L + + DE S LD + +++ L+
Sbjct: 101 VNE---GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA-EVINKLR--EEG 154
Query: 670 KTTICIAHRLSTIKHLLGYKAH 691
K+ + I H + ++ + H
Sbjct: 155 KSVLIITHYQRLLDYIKPDRVH 176
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 65.5 bits (160), Expect = 2e-11
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 44/207 (21%)
Query: 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI---NDVDLDSLRRHI 560
+ G+++ +VG SG GKST R + + G + GK++ D + ++R I
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100
Query: 561 AIVPQDPVLFHDTILYNIN----YGD-------------KSKSYEETIEA--AKLADLHN 601
++ QDP L ++N G+ + ++ ++A K+ L N
Sbjct: 101 QMIFQDP-------LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN 153
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD-SITEN--N 658
I ++P+ + SGG+ QR+ IARA++ +++ DE S+LD SI N
Sbjct: 154 LINRYPHEF-----------SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN 202
Query: 659 ILSSLKTASRNKTTICIAHRLSTIKHL 685
+L L+ + I IAH L+ +KH+
Sbjct: 203 LLQQLQ-REMGLSLIFIAHDLAVVKHI 228
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 63.3 bits (154), Expect = 3e-11
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558
+F L+F + AG+++ + G +G+GK+T++R+L +G I IDGK D R
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS---R 82
Query: 559 HIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
+A + P L D + L N+++ A ++ +I+ + +T V +
Sbjct: 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGR----RAKQMPGSALAIVGLAGYEDTLVRQ- 137
Query: 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
LS G+K+R+A+AR L P+ + DE ++LD
Sbjct: 138 ---LSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 63.7 bits (155), Expect = 4e-11
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 20/196 (10%)
Query: 487 VNFSYIDKHTKRI--FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA--GAIY 542
++F + H +I ++ I G+ V ++G +G+GK+T++ L +P A G I
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG--DPRATSGRIV 63
Query: 543 IDGKNINDVDLDS-LRRHIAIVPQDPVLFHD-TILYNINYGD---KSKSYEETIEAAKLA 597
DGK+I D +R +AIVP+ +F T+ N+ G + ++E I+ +
Sbjct: 64 FDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK--WVY 121
Query: 598 DLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITEN 657
+L +P +E ++ +R +SGGE+Q +AI RA++ +L+ DE + L I
Sbjct: 122 EL------FPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174
Query: 658 NILSSLKTASRNKTTI 673
I +++ TI
Sbjct: 175 QIFDTIEQLREQGMTI 190
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 66.4 bits (162), Expect = 4e-11
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 29/201 (14%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN--AGAIYIDGKNINDVDLD 554
+ I + + G+ +A++G SGSGKST++ L + N G I + + L
Sbjct: 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL- 139
Query: 555 SLRRHIAIVPQDPVLF-----HDTILY--------NINYGDKSKSYEETIEAAKLADLHN 601
+ V QD +L+ +T+++ ++ +K E I L N
Sbjct: 140 ---KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
+II N + RG+ SGGE++RV+IA +L N +L+ DE TS LD+ ++
Sbjct: 197 TIIG--NSFI-----RGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVL 247
Query: 662 SLKT-ASRNKTTICIAHRLST 681
+L + A + KT + H+ S+
Sbjct: 248 TLGSLAQKGKTIVTSMHQPSS 268
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 64.3 bits (157), Expect = 4e-11
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 24/212 (11%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
++E V S+ DK N++F +P G+ ++G +G+GK+T R++ EP G
Sbjct: 2 ALEIEGVTKSFGDKKAVD---NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE 58
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADL 599
I +G ++ + I +P++ L+ T+ + Y + K + E K
Sbjct: 59 ITWNGGPLSQEIKNR----IGYLPEERGLYPKMTVEDQLKYLAELKGMPKA-EIQKKLQ- 112
Query: 600 HNSIIKWPNHYETQVGERGLK---LSGGEKQRVAIARAILKNTPILVFDEATSSLDSI-T 655
W E VG++ K LS G +Q++ A++ +L+ DE S LD +
Sbjct: 113 -----AWLERLEI-VGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166
Query: 656 E--NNILSSLKTASRNKTTICIAHRLSTIKHL 685
E + + LK T I +HR+ ++ L
Sbjct: 167 ELLKDAIFELK--EEGATIIFSSHRMEHVEEL 196
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 66.0 bits (161), Expect = 4e-11
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LDSL 556
++N T+ G+ A++G +G+GKST++++L EP G I I+ N N +D +
Sbjct: 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78
Query: 557 RRHIAIVPQD-PVLFHDTILYNINYG-------------DKSKSYEETIEAAKLADLHNS 602
+ I I+ Q+ V+ T+L N+ G D + L
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD 138
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL-DSITEN--NI 659
+ + +V LS KQ + IA+ ++ + +++ DE TSSL + + I
Sbjct: 139 L-------DEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 660 LSSLKTASRNKTTICIAHRLSTIK 683
++ L+ + I+H+L+ I+
Sbjct: 188 MNQLR--KEGTAIVYISHKLAEIR 209
Score = 42.8 bits (101), Expect = 6e-04
Identities = 52/250 (20%), Positives = 113/250 (45%), Gaps = 25/250 (10%)
Query: 449 IDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIP 508
+ + LM+ ++N+ NA+ ++ F N + D+ K++ +++F++
Sbjct: 232 VSNDDIVRLMVGR-ELQNRFNAMKENVSNLAHETVFEVRNVTSRDR--KKV-RDISFSVC 287
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN-DVDLDSLRRHIAIVPQ-- 565
G+ + G GSG++ ++ L+ + G I ++GK+I+ LD++++ +A + +
Sbjct: 288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESR 347
Query: 566 -DPVLFHD-TILYNI---------NYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQ- 613
D F + +I N+ Y + E E + A+ ++ H Q
Sbjct: 348 RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-QRTAENQRELLALKCHSVNQN 406
Query: 614 VGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL-KTASRNKTT 672
+ E LSGG +Q+V I++ + +++FDE T +D + I + + A K
Sbjct: 407 ITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVI 462
Query: 673 ICIAHRLSTI 682
+ ++ L I
Sbjct: 463 LMVSSELPEI 472
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 65.9 bits (161), Expect = 5e-11
Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 51/314 (16%)
Query: 404 IFAAREIAHGNLTVGDLV---MVNG-LLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLM- 458
IF A ++ +L+ NG LL + + LG L R++ + + TL+
Sbjct: 349 IFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQ 408
Query: 459 ---------LKEP------TIKNKANALPLVLTTSNASIEFRDVNFSYIDKHT---KRIF 500
K P + + LV + + F I T +
Sbjct: 409 VLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLI 468
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560
+L+F +P+G ++ I G +G GKS++ R+L + G + K +
Sbjct: 469 ESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG-----------KL 517
Query: 561 AIVPQDP----------VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHY 610
VPQ P +++ D+ G K E+ ++ +L + W
Sbjct: 518 FYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGW---- 573
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK 670
+ V + LSGGEKQR+A+AR + DE TS++ E + +
Sbjct: 574 -SAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GI 630
Query: 671 TTICIAHRLSTIKH 684
T ++HR S K+
Sbjct: 631 TLFSVSHRKSLWKY 644
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 64.4 bits (157), Expect = 7e-11
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 40/201 (19%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI-DGKNINDV---DLDSLR 557
N + I G+ ++G SGSGKST++R + + G++ + DG DV D +LR
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 558 R----HIAIVPQD----PVLFHDTILYNINYG---------DKSKSYEETIEAAKLADLH 600
R +++V Q P T+ N+ +G ++ K +E +E LA
Sbjct: 102 RLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQ-- 156
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
W + GE LSGG +QRV +ARA PIL+ DE S+LD + +
Sbjct: 157 -----WADRK---PGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQ 204
Query: 661 SSLKTASR--NKTTICIAHRL 679
L KT + ++H L
Sbjct: 205 DELLELQSKLKKTIVFVSHDL 225
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 62.2 bits (152), Expect = 9e-11
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 33/199 (16%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK-----NIN- 549
+++F +P G+ + ++G +G+GKST++RLL + P++G + + G+ +
Sbjct: 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGG 93
Query: 550 --DVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWP 607
+ +L + R +I + L ++ + + +E IE ++L D
Sbjct: 94 GFNPEL-TGRENIYLN---------GRLLGLSRKEIDEKIDEIIEFSELGD--------- 134
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667
+ V S G K R+A A A IL+ DE + D+ + L+
Sbjct: 135 -FIDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189
Query: 668 RNKTTICIA-HRLSTIKHL 685
+ T+ + H S+IK L
Sbjct: 190 KQGKTVILVSHDPSSIKRL 208
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 60.5 bits (146), Expect = 1e-10
Identities = 45/185 (24%), Positives = 64/185 (34%), Gaps = 61/185 (32%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEP-NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPV 568
G+ + IVG GSGK+T+ R L R P G IYIDG++I + LD L I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 569 LFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQR 628
VG + SG + R
Sbjct: 54 ---------------------------------------------VGGKKASGSGELRLR 68
Query: 629 VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS-------RNKTTICIAHRLST 681
+A+A A +L+ DE TS LD+ E +L + +N T I +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 682 IKHLL 686
+ L
Sbjct: 129 LGPAL 133
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 62.6 bits (153), Expect = 1e-10
Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 49/222 (22%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF--FEPNAGAIYIDGKNINDVDLD 554
K I +N T+ G+ AI+G +GSGKST+ + +E G I DG++I ++ D
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76
Query: 555 S-LRRHIAIVPQDP-------VLFHDTILYNINYGDK---SKSYEETIEAAKLADLHNSI 603
R I + Q P N G + + +E E A+L L
Sbjct: 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 604 IKWPNHYETQVGERGL--KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
+ ER + SGGEK+R I + +L + + DE S LD +
Sbjct: 137 L-----------ERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD-------ID 178
Query: 662 SLKT--------ASRNKTTICIAHRLSTIKHLLGY----KAH 691
+LK + + I H + LL Y K H
Sbjct: 179 ALKIVAEGINALREEGRGVLIITHY----QRLLDYIKPDKVH 216
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 62.9 bits (153), Expect = 2e-10
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 32/209 (15%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
SI + Y T+ ++F G+ V +G +G+GKST ++++ + P++G+
Sbjct: 2 SIRVSSLTKLY---GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58
Query: 541 IYIDGKNINDVDLDSL--RRHIAIVPQDPVLFHDTI----------LYNINYGDKSKSYE 588
+ + G DV + +R+I +P+ L+ D +Y + + E
Sbjct: 59 VQVCG---EDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVE 115
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
E IE L P ++ ++G+ LS G +QRV +A+A++ + +L+ DE T
Sbjct: 116 EMIELVGLR---------PEQHK-KIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPT 161
Query: 649 SSLDSITENNILSSLKTASRNKTTICIAH 677
+ LD I + +K ++KT I H
Sbjct: 162 TGLDPNQLVEIRNVIKNIGKDKTIILSTH 190
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 60.6 bits (148), Expect = 2e-10
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 42/173 (24%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
+ +FS L+FT+ AG+ V I G +G+GK++++R+L P+AG + G+ I D
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEY 72
Query: 557 RR------HIAIVPQDPVLFHDTILYNINY-----GDKSKSYEETIEAAKLADLHNSIIK 605
+ H + L T L N+ + G +E + A LA
Sbjct: 73 HQDLLYLGHQPGI--KTEL---TALENLRFYQRLHGPGD---DEALWEA-LA-------- 115
Query: 606 WPNHYETQVGERGLK------LSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
QVG G + LS G+++RVA+AR L P+ + DE +++D
Sbjct: 116 -------QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 61.7 bits (150), Expect = 3e-10
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
L+FT+ G+++AI+G +GSGKST+ ++L EP +G + ID ++ D + I
Sbjct: 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIR 90
Query: 562 IVPQDPV-----------LFHDTILYN--INYGDKSKSYEETIEAAKLADLHNSIIKWPN 608
++ QDP + + N + + K ET+ L H S +P+
Sbjct: 91 MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY--YPH 148
Query: 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
L+ G+KQR+ +ARA++ +++ DEA +SLD
Sbjct: 149 -----------MLAPGQKQRLGLARALILRPKVIIADEALASLD 181
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 60.7 bits (148), Expect = 4e-10
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 47/181 (25%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL--- 556
+++F + G+ + IVG SGSGK+T++ L P+AG ++ ++ DL +L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 557 -RRHIA-----IVPQDP---VLFHDTILYNI----------NYGD---KSKSYEETIE-- 592
RR + V Q P + + NI +YGD + + E +E
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF-DEATSSL 651
AA++ DL P + SGG +QR+ IAR L P LVF DE T L
Sbjct: 142 AARIDDL-------PTTF-----------SGGMQQRLQIARN-LVTHPRLVFMDEPTGGL 182
Query: 652 D 652
D
Sbjct: 183 D 183
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 62.6 bits (153), Expect = 5e-10
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 54/226 (23%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE +++ + DK + +L+F +P G V ++G +G+GKST+ R++ +P++G I
Sbjct: 323 IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKS-YEETIEAAKLADLH 600
I G+ + +A V Q D + D +K+ +EE + L
Sbjct: 380 KI-GETV----------KLAYVDQ----SRDAL-------DPNKTVWEEISGGLDIIQLG 417
Query: 601 NSIIK------WPN----HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
+ N + +VG+ LSGGE+ RV +A+ + +L+ DE T+
Sbjct: 418 KREVPSRAYVGRFNFKGSDQQKKVGQ----LSGGERNRVHLAKTLKSGGNVLLLDEPTND 473
Query: 651 LDSITENNILSSLKTASRN--KTTICIAH------RLSTIKHLLGY 688
LD T L +L+ A + I+H R++T H+L +
Sbjct: 474 LDVET----LRALEEALLEFAGCAVVISHDRWFLDRIAT--HILAF 513
Score = 52.2 bits (126), Expect = 9e-07
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 56/194 (28%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
K I +++ + G + ++G +G+GKST++R++ AG +D K N +
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---VD-KEFNGEARPAP 66
Query: 557 RRHIAIVPQDPVLFHD---TILYNI-------------------NYGDKSKSY------- 587
+ +PQ+P L D T+ N+ + +
Sbjct: 67 GIKVGYLPQEPQL--DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 588 ---EETIEAAKLADLHNSI------IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638
+E I+AA DL + ++ P ++ V KLSGGE++RVA+ R +L
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVT----KLSGGERRRVALCRLLLSK 179
Query: 639 TPILVFDEATSSLD 652
+L+ DE T+ LD
Sbjct: 180 PDMLLLDEPTNHLD 193
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 60.5 bits (147), Expect = 5e-10
Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 23/208 (11%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL--- 556
+++F + G+ + IVG SGSGK+T+++ + P+AG + ++ DL ++
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 557 -RRHIA-----IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHY 610
RR + V Q+P D + ++ G I A ++ W
Sbjct: 82 ERRRLLRTEWGFVHQNPR---DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV 138
Query: 611 E---TQVGERGLKLSGGEKQRVAIARAILKNTPILVF-DEATSSLDSITENNILSSLKTA 666
E ++ + SGG +QR+ IAR L P LVF DE T LD + +L L+
Sbjct: 139 EIDLDRIDDLPRTFSGGMQQRLQIARN-LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL 197
Query: 667 SRNK--TTICIAHRLSTIKHLLGYKAHR 692
R + + H L+ + L A R
Sbjct: 198 VRELGLAVVIVTHDLAVARLL----ADR 221
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 59.2 bits (143), Expect = 6e-10
Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 23/184 (12%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
+++F Y H + + ++F +PAG + + G +G+GK+T+++L+ P G I +
Sbjct: 6 ELDFDY---HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 546 KNINDVDLDSLRRHIAIVPQ----DPVL-FHDTILYNINYGDKSKSYEETIEAAKLADLH 600
++I DL + ++ + V +P L + LY+I++ + E L L
Sbjct: 63 QSI-KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL- 120
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
I +P GL LS G+K++VA+ R + + + DE +LD ++ I+
Sbjct: 121 ---IDYPC---------GL-LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167
Query: 661 SSLK 664
+ ++
Sbjct: 168 TKIQ 171
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 59.4 bits (144), Expect = 9e-10
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 28/196 (14%)
Query: 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL 553
+H I + + + G+++A++G SGSGKST++ +L + ++G + + G+ ++ +D
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDE 79
Query: 554 D---SLR-RHIAIVPQD----PVLFHDTILYNINY-----GDKSK-SYEETIEAAKLADL 599
+ LR +H+ V Q P L L N+ G+ S+ S + L
Sbjct: 80 EARAKLRAKHVGFVFQSFMLIPTL---NALENVELPALLRGESSRQSRNGAKALLEQLGL 136
Query: 600 HNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+ +H Q LSGGE+QRVA+ARA +L DE T +LD T + I
Sbjct: 137 GKRL----DHLPAQ-------LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI 185
Query: 660 LSSLKTASRNKTTICI 675
L + +R T I
Sbjct: 186 ADLLFSLNREHGTTLI 201
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 58.9 bits (143), Expect = 1e-09
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKS----TIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
++ T+ G+ +A+VGGSGSGKS + +L AG + +DGK V +L
Sbjct: 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK---PVAPCAL 76
Query: 557 R-RHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG 615
R R IA + Q+P + + ++ ET A ++ VG
Sbjct: 77 RGRKIATIMQNPRSAFNPLH---TMHTHAR---ETCLALGKPADDATLT----AALEAVG 126
Query: 616 ----ERGLKL-----SGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663
R LKL SGG QR+ IA A+L P ++ DE T+ LD + + IL L
Sbjct: 127 LENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLL 183
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 59.1 bits (143), Expect = 2e-09
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)
Query: 500 FSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL--- 556
+++F + G+ + IVG SGSGKST++ L P+ G ++ +++L L
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 557 -RRHIA-----IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHY 610
RR + V Q+P D + ++ G I A ++ + W
Sbjct: 79 ERRRLMRTEWGFVHQNP---RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEV 135
Query: 611 E---TQVGERGLKLSGGEKQRVAIARAILKNTPILVF-DEATSSLDSITENNILSSLKTA 666
E T++ + SGG +QR+ IAR L P LVF DE T LD + +L L+
Sbjct: 136 EIDPTRIDDLPRAFSGGMQQRLQIAR-NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL 194
Query: 667 SRNK--TTICIAHRLSTIKHLLGYKAHR 692
R+ I + H L + L A R
Sbjct: 195 VRDLGLAVIIVTHDLGVARLL----AQR 218
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 57.3 bits (139), Expect = 2e-09
Identities = 42/189 (22%), Positives = 64/189 (33%), Gaps = 55/189 (29%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND----VDLDSLR 557
NL+ +IP V + G SGSGKST L+ + A I + +D L+
Sbjct: 13 NLDVSIPLNVLVVVTGVSGSGKST---LVNEGLYASGKARLISFLPKFSRNKLIFIDQLQ 69
Query: 558 RHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
I + + Y +G++
Sbjct: 70 FLIDV--------------GLGY-------------------------------LTLGQK 84
Query: 618 GLKLSGGEKQRVAIARAILKNTP--ILVFDEATSSLDSITENNILSSLKT-ASRNKTTIC 674
LSGGE QRV +A + P + + DE ++ L N +L +K T I
Sbjct: 85 LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144
Query: 675 IAHRLSTIK 683
I H L +
Sbjct: 145 IEHNLDVLS 153
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 57.9 bits (140), Expect = 3e-09
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 35/185 (18%)
Query: 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVP 564
+ G+ + ++G +G+GK+T++R + P G + + G + RHI VP
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVP 55
Query: 565 QD-------PVLFHDTILYN----INYGDKSK-----SYEETIEAAKLADLHNSIIKWPN 608
Q P+ T++ I + + + + + L +L +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR------ 109
Query: 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR 668
VGE LSGG++QRV +ARA+ +L+ DE + LD T+ + +
Sbjct: 110 ----PVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG 161
Query: 669 NKTTI 673
T I
Sbjct: 162 AGTAI 166
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 60.5 bits (147), Expect = 3e-09
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 27/204 (13%)
Query: 493 DKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL----YRFFEPNAGAIYIDGKNI 548
D T I ++ I G+ ++G GSG ST+++ + F G I DG
Sbjct: 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG--- 126
Query: 549 NDVDLDSLRRH----IAIVPQDPVLF-HDTILYNINYGDKSKSYEETIE-------AAKL 596
+ + +++H + + V F H T+ +++ + K+ + + A +
Sbjct: 127 --ITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHI 184
Query: 597 ADLHNSIIKWPNHYETQVGE---RGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
AD++ + + T+VG RG+ SGGE++RV+IA A L I +D AT LDS
Sbjct: 185 ADVYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 654 ITENNILSSLKT-ASRNKTTICIA 676
T + +LKT A+ TT +A
Sbjct: 243 ATALEFIRALKTSANILDTTPLVA 266
Score = 44.7 bits (106), Expect = 2e-04
Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 29/217 (13%)
Query: 483 EFRDVNFSY-IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+R++ + I K + I +N++ + G A++G SG+GK+T++ +L G I
Sbjct: 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTGVI 818
Query: 542 YIDGKNINDVDLD-SLRRHIAIVPQDPV-LFHDTILYNINYG------------DKSKSY 587
+ +N LD S +R I V Q + L T+ ++ + +K +
Sbjct: 819 TGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYV 878
Query: 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVF-DE 646
EE I+ ++ +++ VG G L+ +++R+ I ++ +L+F DE
Sbjct: 879 EEVIKLLEMESYADAV----------VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDE 928
Query: 647 ATSSLDSITENNILSSL-KTASRNKTTICIAHRLSTI 682
TS LDS T +I + K A + +C H+ S I
Sbjct: 929 PTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAI 965
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 58.5 bits (141), Expect = 3e-09
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 12/171 (7%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
D+ F Y D+ + LN +VG +G GKST+ L P GA+ G
Sbjct: 6 DLWFRYQDE---PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 546 KNIN--DVDLDSLRRHIAIVPQDP--VLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
K ++ L +LR+ +A V QDP +F+ I +I + ++ E E + D
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEA-EITRRVDEAL 121
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
+++ H+ Q + LS G+K+RVAIA A++ L+ DE T+ LD
Sbjct: 122 TLVD-AQHFRHQPIQ---CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 59.8 bits (145), Expect = 3e-09
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA---GAIYIDGKNINDVDL-DSLR 557
++ + G+ V + G +G+GKST++++L + P+ G IY G + ++ D+ R
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDTER 77
Query: 558 RHIAIVPQDPVLFHD-TILYNINYGDK------SKSYEETIEAAK--LADLHNSIIKWPN 608
I I+ Q+ L + ++ NI G++ +Y AK L +L
Sbjct: 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD--NV 135
Query: 609 HYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL-DSITEN--NILSSLKT 665
VG+ G GG++Q V IA+A+ K +L+ DE +SSL + TE +I+ LK
Sbjct: 136 --TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK- 188
Query: 666 ASRNKTTICIAHRLSTIK 683
+ + I+H+L+ +K
Sbjct: 189 -AHGVACVYISHKLNEVK 205
Score = 54.4 bits (131), Expect = 1e-07
Identities = 45/175 (25%), Positives = 90/175 (51%), Gaps = 22/175 (12%)
Query: 492 IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN-AGAIYIDGKNIND 550
I+ H KR+ +++F++ G+ + + G G+G++ +++ L+ + G ++I+GK ++
Sbjct: 269 INPHRKRV-DDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDI 327
Query: 551 VD-LDSLRRHIAIVPQD-------PVLFHDTILYNINYGD-KSKSYEETIEAAKLADLHN 601
+ ++R IA+VP+D P+L + NI KS ++ I+AA +
Sbjct: 328 RNPAQAIRAGIAMVPEDRKRHGIVPIL---GVGKNITLSVLKSFCFKMRIDAAAELQIIG 384
Query: 602 SIIKW----PNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
S I+ +G +LSGG +Q+ +A+ +L N +L+ DE T +D
Sbjct: 385 SAIQRLKVKTASPFLPIG----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 57.8 bits (140), Expect = 4e-09
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ 565
+I + + I+G +G GK+T I++L +P+ G D++ ++ PQ
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG------------DIEIELDTVSYKPQ 68
Query: 566 ----DPVLFHDTILYNINYGDKSKSYEET--IEAAKLADLHNSIIKWPNHYETQVGERGL 619
D +L +I + Y +T + ++ + + +V E
Sbjct: 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQI----------LDREVPE--- 115
Query: 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
LSGGE QRVAIA + K+ I + DE ++ LD
Sbjct: 116 -LSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 56.2 bits (136), Expect = 1e-08
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 42/199 (21%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR----------- 558
G+ + +VG +G GKST +++L +PN G + D + +++ LD R
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGK-FDDPPDWDEI-LDEFRGSELQNYFTKLL 83
Query: 559 ----HIAIVPQD----PVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHY 610
+ + PQ P + + D+ +E ++ +L
Sbjct: 84 EGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL-------------- 129
Query: 611 ETQVGERGL-KLSGGEKQRVAIARAILKNTPILVFDEATSSLD---SITENNILSSLKTA 666
V +R + +LSGGE QRVAIA A+ ++ FDE +S LD + ++ L A
Sbjct: 130 -RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL--A 186
Query: 667 SRNKTTICIAHRLSTIKHL 685
+ + + H L+ + +L
Sbjct: 187 EDDNYVLVVEHDLAVLDYL 205
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 57.7 bits (140), Expect = 2e-08
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 50/244 (20%)
Query: 505 FTIPA---GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR--- 558
+ +P GK V I+G +G GKST +++L +PN G Y D + ++V + R
Sbjct: 92 YRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGR-YEDPPSWDEV-IKRFRGTEL 149
Query: 559 ------------HIAIVPQ--D--PVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNS 602
PQ D P + + + D+ ++E +E L ++ +
Sbjct: 150 QNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDR 209
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD---SITENNI 659
+ +LSGGE QRVAIA A+L++ + FDE +S LD + +
Sbjct: 210 DVS--------------ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255
Query: 660 LSSLKTASRNKTTICIAHRLSTIKHLLGYKAHRKTSTNLVRGNSSAMRSMSLSRFSQVHL 719
+ L A K I + H L+ + +L +++ G +S + +V +
Sbjct: 256 IREL--AEDGKYVIVVEHDLAVLDYL-------SDFVHILYGEPGVYGVVSKPKSVRVGI 306
Query: 720 NRYL 723
N YL
Sbjct: 307 NEYL 310
Score = 55.8 bits (135), Expect = 7e-08
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ 565
I G+ + I+G +G GK+T ++LL AG I D + D+ + ++I+
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLL-------AGVIKPDEGSEEDLKVSYKPQYISPDYD 415
Query: 566 DPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625
V + +L + SY +T E K +L + E V E LSGGE
Sbjct: 416 GTV---EDLLRSAIRSAFGSSYFKT-EIVKPLNLEDL-------LERPVDE----LSGGE 460
Query: 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR-----NKTTICIAHRLS 680
QRVAIA A+ + + + DE ++ LD E I+ + K R KT + + H +
Sbjct: 461 LQRVAIAAALSREADLYLLDEPSAYLDV--EQRIIVA-KVIRRFIENNEKTALVVDHDIY 517
Query: 681 TIKHL 685
I ++
Sbjct: 518 MIDYV 522
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 57.4 bits (139), Expect = 2e-08
Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN-DVDLDSLRRHI 560
N+N + A++G +G+GKST+++ L+ ++ ++G+I GK I+ ++L I
Sbjct: 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI 75
Query: 561 AIVPQD-PVLFHDTILYNINYG---------DKSKSYEETIEAAKLADLHNSIIKWPNHY 610
++V Q+ ++ +++ N+ G D+ K Y +T D+
Sbjct: 76 SMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI----------- 124
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSL-KTASRN 669
+ + LS + Q + IA+A N I++ DE TSSL N++ + + K R
Sbjct: 125 DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG 184
Query: 670 KTTICIAHRLSTIKHL 685
+ I+H++ I L
Sbjct: 185 CGIVYISHKMEEIFQL 200
Score = 44.3 bits (105), Expect = 2e-04
Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 35/206 (16%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LDSLRRHI 560
+++F + G+ + I G G+ ++ I+ L+ E +AG I + GK IN+ + +++
Sbjct: 266 DVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325
Query: 561 AIVPQD----------PVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSI------- 603
A+V ++ + F ++++ NI ++Y+ + + + +
Sbjct: 326 ALVTEERRSTGIYAYLDIGF-NSLISNI------RNYKNKVGLLDNSRMKSDTQWVIDSM 378
Query: 604 -IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS- 661
+K P H TQ+G LSGG +Q+V I R +L IL+ DE T +D + I
Sbjct: 379 RVKTPGHR-TQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQL 433
Query: 662 SLKTASRNKTTICIAHRLSTIKHLLG 687
+ A ++K I I+ S + LLG
Sbjct: 434 IAELAKKDKGIIIIS---SEMPELLG 456
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 53.2 bits (129), Expect = 3e-08
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE +++ +Y K + +++ TI G + +VG +G+GKST+++L+ EP+ G I
Sbjct: 1 IELENLSKTY---GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-I 56
Query: 542 YIDGKNIN 549
G +
Sbjct: 57 VTWGSTVK 64
Score = 44.7 bits (107), Expect = 2e-05
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
LSGGEK R+A+A+ +L+N +L+ DE T+ LD
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 54.2 bits (131), Expect = 3e-08
Identities = 45/215 (20%), Positives = 88/215 (40%), Gaps = 57/215 (26%)
Query: 479 NASIEFRDVNFSY-IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
+ + ++++N++ + +++ +N++ + G A++G SG+GK+T++ +L
Sbjct: 1 GSVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVL------- 53
Query: 538 A---------GAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYE 588
A G I I+G+ ++ + +R V Q V + +
Sbjct: 54 AGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHS------------PNLTVR 97
Query: 589 ETIE-AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
E + +A L RGL + +++R+ I + IL DE
Sbjct: 98 EALRFSALL--------------------RGLSVE--QRKRLTIGVELAAKPSILFLDEP 135
Query: 648 TSSLDSITENNILSSL-KTASRNKTTICIAHRLST 681
TS LDS NI+ L K A + +C H+ S
Sbjct: 136 TSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 56.4 bits (136), Expect = 5e-08
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 36/179 (20%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I F D +F Y +F NLNF I +A+VG +G GKSTI++L+ +P++G +
Sbjct: 509 ISFSDASFGYPGGPL--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPV----LFHDTILYNINYGDKSKSYEETIEAAKLA 597
+ S + +A+ Q V L + +LY + + E A
Sbjct: 567 F-----------RSAKVRMAVFSQHHVDGLDLSSNPLLY------MMRCFPGVPEQKLRA 609
Query: 598 DLHNSIIKWPNHYETQVGERGLK----LSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
L + + G L+ LSGG+K RVA A+ K IL+ DE ++ LD
Sbjct: 610 HLGSFGVT---------GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
Score = 33.3 bits (76), Expect = 0.69
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 622 SGGEKQRVAIARAILKNTPILVFDEATSSLD 652
SGG + R+A+ARA+ +L+ DE T+ LD
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 55.6 bits (135), Expect = 7e-08
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 34/153 (22%)
Query: 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ 565
I G+ + IVG +G GK+T +LL +P+ G + D +L I+ PQ
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--------DPELK-----ISYKPQ 407
Query: 566 ----DPVLFHDTILYNI--NYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGL 619
D + +L +I + G S E I+ +L L + V +
Sbjct: 408 YIKPDYDGTVEDLLRSITDDLGS-SYYKSEIIKPLQLERL----------LDKNVKD--- 453
Query: 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
LSGGE QRVAIA + ++ + + DE ++ LD
Sbjct: 454 -LSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
Score = 52.9 bits (128), Expect = 5e-07
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITEN-NILSSLKTASRNKTTICIAHR 678
+LSGGE QRVAIA A+L++ FDE TS LD I + N+ ++ + K + + H
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLD-IRQRLNVARLIRELAEGKYVLVVEHD 270
Query: 679 L 679
L
Sbjct: 271 L 271
Score = 32.1 bits (74), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
GK I+G +G GK+T +++L PN G
Sbjct: 99 GKVTGILGPNGIGKTTAVKILSGELIPNLG 128
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 55.0 bits (133), Expect = 9e-08
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 36/201 (17%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN-DVDLDSLRRH 559
S + G+ +A+VG +G+GKST++++L + +AG+I GK + + S
Sbjct: 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80
Query: 560 IAIVPQDPVLF-HDTILYNINYG----------DKSKSYEETIEAAK-LADL---HNSII 604
I I+ Q+ L TI NI G D K Y EA K LA L +S
Sbjct: 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA---EADKLLARLNLRFSS-- 135
Query: 605 KWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL-DSITEN--NILS 661
+ VGE LS GE+Q V IA+ + + +++ DE T +L D+ TE+ ++
Sbjct: 136 ------DKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185
Query: 662 SLKTASRNKTTICIAHRLSTI 682
LK+ R + I+HRL I
Sbjct: 186 ELKSQGRG--IVYISHRLKEI 204
Score = 51.9 bits (125), Expect = 9e-07
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD-LDSLRRHI 560
+++FT+ G+ + + G G+G++ ++++LY +G + +DG + D L I
Sbjct: 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329
Query: 561 AIVPQDP-----VL-------FHDTIL-YNINYGDKSKSYEETIEAAKLADLHNSIIKWP 607
+ +D VL T L Y G K +E + L N IK P
Sbjct: 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFN--IKTP 387
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
+ E +G LSGG +Q+VAIAR ++ +L+ DE T +D
Sbjct: 388 SM-EQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 54.4 bits (131), Expect = 1e-07
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 60/250 (24%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKST---IIRLL 530
+L S+ F D + + R +++++ G+ V IVG SGSGKS I L
Sbjct: 3 LLNVDKLSVHFGDESAPF------RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56
Query: 531 YRFFEPNAGAIYIDGKNINDVDLDSL----RRHI-----AIVPQDPVLFHDTIL---YNI 578
+ G + + N DL + RR++ A++ QDP+ T L Y +
Sbjct: 57 IDY----PGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM----TSLNPCYTV 108
Query: 579 NY-----------GDKSKSYEETIEAAKLA---DLHNSIIKWPNHYETQVGERGLKLSGG 624
+ G+K + I+ D + + +P+ +LSGG
Sbjct: 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPH-----------QLSGG 157
Query: 625 EKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLSTI 682
QRV IA AI +L+ DE T++LD + I+ L + N + I H L+
Sbjct: 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-- 215
Query: 683 KHLLGYKAHR 692
L+ AH+
Sbjct: 216 --LVAEAAHK 223
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 54.1 bits (130), Expect = 1e-07
Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 41/214 (19%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL- 556
+ ++ T+ G+ +VG SGSGKS I + + + N + D +D+DL L
Sbjct: 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLLRLS 79
Query: 557 ---RR-----HIAIVPQDPVLFHD-------TILYNI-----------NYGDKSKSYEET 590
RR +++++ Q+P D ++ NI +G + + E
Sbjct: 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIEL 139
Query: 591 IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
+ + D + + +P +L+ GE Q+V IA A+ +L+ DE T+S
Sbjct: 140 LHRVGIKDHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPRLLIADEPTNS 188
Query: 651 LDSITENNILSSLKTASRNKTT--ICIAHRLSTI 682
++ T+ I L ++N T + I+H L I
Sbjct: 189 MEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMI 222
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 51.9 bits (124), Expect = 4e-07
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 34/198 (17%)
Query: 495 HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA---IYIDGKNINDV 551
+ + ++ I G+ VA++G SGSGKST++R L + A I + G+ +
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 552 -----DLDSLRRHIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
D+ R + + Q L + ++L N+ I A +
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENV-----------LIGALGSTPFWRTCFS 123
Query: 606 WPNHYE--------TQVG------ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
W + T+VG +R LSGG++QRVAIARA+++ +++ DE +SL
Sbjct: 124 WFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 652 DSITENNILSSLKTASRN 669
D + ++ +L+ ++N
Sbjct: 184 DPESARIVMDTLRDINQN 201
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 53.0 bits (128), Expect = 5e-07
Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 72/197 (36%)
Query: 483 EFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIY 542
E +VN+ K ++ + + + G +A++G +G GK+T+++L+ + ++G I+
Sbjct: 321 EMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377
Query: 543 I---------------------------DGKNINDVDLDSLRRHIAIVPQDPVLFHDTIL 575
+GK +V ++ RH+ QD LFH
Sbjct: 378 CGTKLEVAYFDQHRAELDPEKTVMDNLAEGK--QEVMVNGRPRHVLGYLQD-FLFH---- 430
Query: 576 YNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635
P T V LSGGE+ R+ +AR
Sbjct: 431 -------------------------------PKRAMTPVK----ALSGGERNRLLLARLF 455
Query: 636 LKNTPILVFDEATSSLD 652
LK + +L+ DE T+ LD
Sbjct: 456 LKPSNLLILDEPTNDLD 472
Score = 35.7 bits (83), Expect = 0.11
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 51/185 (27%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID-GKNINDVDLDSLRRHI 560
N I + V +VG +G+GKST++++L G + +D G+ I + DL +
Sbjct: 21 NAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQDLI-----V 68
Query: 561 AIVPQDP------VLFHDTILYNINY-GDKSKSYEETI-------------EAAKLADL- 599
A + QDP ++ D + I + K Y + E AKL +
Sbjct: 69 ARLQQDPPRNVEGTVY-DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 600 -HNSIIKWPNHYETQVGER----GL----KLS---GGEKQRVAIARAILKNTPILVFDEA 647
H+++ W E ++ E GL LS GG ++ A+ RA++ N +L+ DE
Sbjct: 128 DHHNL--W--QLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183
Query: 648 TSSLD 652
T+ LD
Sbjct: 184 TNHLD 188
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 51.7 bits (125), Expect = 1e-06
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 56/202 (27%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE +++ S+ D+ + +L+F++P G V I+G +G+GKST+ +++ +P++G I
Sbjct: 325 IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
I G+ + +A V Q D + D +K+ E I
Sbjct: 382 KI-GETV----------KLAYVDQ----SRDAL-------DPNKTVWEEISGG------L 413
Query: 602 SIIKWPNHYETQ----VGERGLK----------LSGGEKQRVAIARAILK---NTPILVF 644
IIK N E VG K LSGGE+ R+ +A+ LK N +L+
Sbjct: 414 DIIKVGN-REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAK-TLKQGGN--VLLL 469
Query: 645 DEATSSLDSITENNILSSLKTA 666
DE T+ LD T L +L+ A
Sbjct: 470 DEPTNDLDVET----LRALEEA 487
Score = 45.9 bits (110), Expect = 8e-05
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 66/199 (33%)
Query: 497 KRIFSN--LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIN-DVDL 553
K+I + L+F P K + ++G +G+GKST++R++ AG +D K +
Sbjct: 20 KQILKDISLSF-FPGAK-IGVLGLNGAGKSTLLRIM-------AG---VD-KEFEGEARP 66
Query: 554 DSLRRHIAIVPQDPVLFHD-TILYNI-------------------NYGDKSKSYEETI-E 592
+ + +PQ+P L + T+ N+ Y + ++ E
Sbjct: 67 APGIK-VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAE 125
Query: 593 AAKL------ADLHNSIIKWPNHYETQVGERGL-------------KLSGGEKQRVAIAR 633
+L AD + ++Q+ E + KLSGGE++RVA+ R
Sbjct: 126 QGELQEIIDAADAWDL--------DSQL-EIAMDALRCPPWDAKVTKLSGGERRRVALCR 176
Query: 634 AILKNTPILVFDEATSSLD 652
+L+ +L+ DE T+ LD
Sbjct: 177 LLLEKPDMLLLDEPTNHLD 195
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 49.9 bits (120), Expect = 1e-06
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL--YRFFEPNAGAIYIDGKNINDVDLD 554
K I +N T+ G+ AI+G +GSGKST+ + + + +E +G I G+++ +++ D
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72
Query: 555 S-LRRHIAIVPQDPV--------LFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
R + + Q P F + L N + + + ++ KL +++
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSAL-NARRSARGEEPLDLLDFLKLLKAKLALLG 131
Query: 606 WPNHYETQVGERGLK--LSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
+ R + SGGEK+R I + L + + DE S LD
Sbjct: 132 MDEEFL----NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 50.0 bits (120), Expect = 2e-06
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 31/199 (15%)
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL-----YRFFEPNAGAIYIDGKNINDVDL 553
I LN +I G+ AI+G +GSGKST+ +++ Y+ E G I G++I D++
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE---GDILFKGESILDLEP 78
Query: 554 DSLRRHIAIVP--QDPVLFHDTI-------LYNINYGDKSKSYE-ETIEAAKLADLHNSI 603
+ R H+ I Q P+ I + Y K K ++ + ++ N
Sbjct: 79 E-ERAHLGIFLAFQYPI----EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEK 133
Query: 604 IKWPNHYET----QVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+K + V E SGGEK+R I + L ++ + + DE S LD I
Sbjct: 134 LKLVGMDPSFLSRNVNE---GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKII 190
Query: 660 LSSLKT-ASRNKTTICIAH 677
+ + + I I H
Sbjct: 191 AEGINKLMTSENSIILITH 209
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 49.1 bits (117), Expect = 3e-06
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD-- 566
AG+ + +VG +G+GKST++ + +G+I G+ + L RH A + Q
Sbjct: 24 AGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQT 82
Query: 567 -----PVLFHDTILYNINYGDKSKSYEETIEAAKLA---DLHNSIIKWPNHYETQVGERG 618
PV +H L+ DK+++ A LA L S N
Sbjct: 83 PPFAMPV-WHYLTLHQ---PDKTRTELLNDVAGALALDDKLGRST----NQ--------- 125
Query: 619 LKLSGGEKQRVAIARAILKNTP-------ILVFDEATSSLDSITENNILSSLKTASRNKT 671
LSGGE QRV +A +L+ TP +L+ DE +SLD ++ + L +
Sbjct: 126 --LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183
Query: 672 TICIA-HRLS-TIKH 684
I ++ H L+ T++H
Sbjct: 184 AIVMSSHDLNHTLRH 198
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 49.1 bits (117), Expect = 3e-06
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY-RFFEPNA-------GAIYIDGKNI 548
+ I +L+ I G+ A++G +G+GKST+++ L A G + ++G+ +
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 549 NDVDLDSLRRHIAIVPQD-----PVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSI 603
+D L R A++PQ + +L Y ++ T ++A ++
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG-RYPHARRAGALTHRDGEIAWQALAL 132
Query: 604 IKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP---------ILVFDEATSSLDSI 654
VG LSGGE RV AR + + P L+ DE T++LD
Sbjct: 133 AG----ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 655 TENNILSSLKTASRN 669
++ +L +++ +R+
Sbjct: 189 HQHRLLDTVRRLARD 203
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 47.9 bits (114), Expect = 4e-06
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 28/195 (14%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
++ +L+ T I G +G GKS+++R++ +P++G IY NIN++
Sbjct: 13 QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---- 68
Query: 557 RRHIAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAA----KLADLHNSIIKWPNHYE 611
+ + + + L + T+ N+ + + + ET+ AA KL DL
Sbjct: 69 KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDL------------ 116
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITEN-NILSSLKTASRNK 670
+ E+ LS G ++ VAIAR I + + + DE ++L EN ++L++L N
Sbjct: 117 --LDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK--ENRDLLNNLIVMKANS 172
Query: 671 TTICI--AHRLSTIK 683
I + +H S+IK
Sbjct: 173 GGIVLLSSHLESSIK 187
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 47.6 bits (113), Expect = 4e-06
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 619 LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRN--KTTICIA 676
+ LSGGE QRVAIA A+L+N +FDE ++ LD N +++ S KT + +
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 677 HRLSTIKHL 685
H L+ + +L
Sbjct: 130 HDLAVLDYL 138
Score = 33.3 bits (76), Expect = 0.25
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548
+ G+ + IVG +G+GK+T +++L PN DG
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP 63
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 48.0 bits (114), Expect = 1e-05
Identities = 52/199 (26%), Positives = 75/199 (37%), Gaps = 48/199 (24%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK-------------- 546
+N++F +P G+ V I+G +GSGKST+ L+ PN G + I G
Sbjct: 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQL 100
Query: 547 -NINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
I +++L L + K K E E + AD+ I +
Sbjct: 101 TGIENIELKGLMMGLT---------------------KEKIKEIIPEIIEFADIGKFIYQ 139
Query: 606 WPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKT 665
Y S G K R+ A ++ N ILV DEA S D L +
Sbjct: 140 PVKTY-----------SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNE 188
Query: 666 ASRN-KTTICIAHRLSTIK 683
KT I+H LS +K
Sbjct: 189 FKEQGKTIFFISHSLSQVK 207
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 47.6 bits (114), Expect = 2e-05
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+F NLN + AG+ +AI+G +G GK+T++R L EP++G +
Sbjct: 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Score = 33.3 bits (77), Expect = 0.53
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLD--SI 654
LSGGEK R+ + +++ +LV DE T+ +D SI
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI 474
Score = 32.2 bits (74), Expect = 1.2
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITEN---NILSSLKTASRNKTTICIAH 677
G K RV +A+A+ N IL+ DE T++LD T ++L+ RN T I I+H
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN-----ERNSTMIIISH 210
Score = 30.2 bits (69), Expect = 4.5
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
+L+T+N +++F K +F N++ G ++G +G GKST +++L
Sbjct: 1 MLSTANITMQF----------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD 50
Query: 534 FEPNAGAIYID 544
EP+AG + +D
Sbjct: 51 LEPSAGNVSLD 61
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 43.8 bits (104), Expect = 2e-04
Identities = 57/232 (24%), Positives = 90/232 (38%), Gaps = 58/232 (25%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTII-RLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560
N++ IP G + G SGSGKS++I LY A A + K + D +
Sbjct: 13 NIDVDIPLGVLTCVTGVSGSGKSSLINDTLYP-----ALARRLHLKKEQPGNHDRIEGLE 67
Query: 561 AI-----VPQDPV-------------LFHDTIL-----------YN-----INYGDKSKS 586
I + Q P+ +F D I YN + Y KS +
Sbjct: 68 HIDKVIVIDQSPIGRTPRSNPATYTGVF-DEIRELFCEVCKGKRYNRETLEVRYKGKSIA 126
Query: 587 --YEETIEAAKLADLHNSIIKWPNHYET---------QVGERGLKLSGGEKQRVAIARAI 635
+ T+E A + +I K +T ++G+ LSGGE QR+ +A+ +
Sbjct: 127 DVLDMTVEEA--LEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKEL 184
Query: 636 LKNTP---ILVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIK 683
K + + + DE T+ L +L L+ + T + I H L IK
Sbjct: 185 SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK 236
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 42.4 bits (101), Expect = 0.001
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKST-IIRLLY 531
N++ IP GK + G SGSGKST I LY
Sbjct: 627 NVDVEIPLGKFTCVTGVSGSGKSTLINETLY 657
Score = 31.6 bits (73), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKST 525
N++ IP K V G SGSGKS+
Sbjct: 18 NIDLDIPRDKLVVFTGLSGSGKSS 41
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 41.1 bits (97), Expect = 0.001
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548
N+N + + V+++G +G+GK+T+ L F++P G I + G++I
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 41.2 bits (97), Expect = 0.001
Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 52/230 (22%)
Query: 472 PLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY 531
P++L S+ F F + ++L+F++ G+ ++G +G+GK+T++ ++
Sbjct: 3 PIILYLDGVSVSFG--GF--------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT 52
Query: 532 RFFEPNAGAIYIDGKNINDVDLDSLRRH-IAIVP-----QDPVLFHD-TILYNI---NYG 581
P G + DG D DL L H IA Q P +F + T+ N+
Sbjct: 53 GKTRPQEGEVLFDG----DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNR 108
Query: 582 DKS--------------KSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627
DKS + +E + L D + LS G+KQ
Sbjct: 109 DKSVFASLFARLRAEERRRIDELLATIGLGDERDR----------LAAL----LSHGQKQ 154
Query: 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
+ I + ++ +L+ DE + + LK+ + + + + H
Sbjct: 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEH 204
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 40.0 bits (94), Expect = 0.005
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 475 LTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL 530
L + I + SY D+ I NL++ + G+ IVG +G+GKST++ L+
Sbjct: 254 LPANEPRIVLNNGVVSYNDR---PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI 306
Score = 34.2 bits (79), Expect = 0.27
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 621 LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTT-------- 672
LS G+++ I RA++K+ +L+ DE LD + + + T
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461
Query: 673 -----ICIAHRLSTIKHLLGYK 689
CI HRL + Y+
Sbjct: 462 AEDAPACITHRLEFVPDGDIYR 483
Score = 33.4 bits (77), Expect = 0.55
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 504 NFTIPAGKSVAIVGGSGSGKSTIIRLL 530
+ T+ AG S A VG +GSGKS + R L
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARAL 49
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 39.9 bits (94), Expect = 0.005
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTII---------RLLYRFFEPNAGAIYIDG 545
N++ IP G + G SGSGKST+I R L E I+G
Sbjct: 619 NIDVEIPLGVFTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEG 671
Score = 33.3 bits (77), Expect = 0.61
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 621 LSGGEKQRVAIARAILKNTP---ILVFDEATSSLDSITENNILSSL-KTASRNKTTICIA 676
LSGGE QRV +A+ + K + + + DE T+ L +L L + + T I I
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 677 HRLSTIKH 684
H L IK
Sbjct: 883 HNLDVIKT 890
Score = 32.2 bits (74), Expect = 1.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTI 526
N++ IP K V I G SGSGKS++
Sbjct: 18 NIDLEIPRNKLVVITGLSGSGKSSL 42
Score = 31.4 bits (72), Expect = 2.3
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 621 LSGGEKQRVAIARAILKN-TPIL-VFDEATSSLDSITENNILSSLKTASRNK--TTICIA 676
LSGGE QR+ +A I T +L V DE + L ++ +LK R+ T I +
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRL-RDLGNTVIVVE 540
Query: 677 HRLSTIKH 684
H TI+
Sbjct: 541 HDEDTIRA 548
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 39.6 bits (93), Expect = 0.008
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTII-----RLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
N+ +IP G I G SGSGKST+I L GA + G+ + L+ L
Sbjct: 626 NITVSIPLGLFTCITGVSGSGKSTLINDTLYPALANRLN---GAKTVPGRYTSIEGLEHL 682
Query: 557 RRHIAIVPQDPV 568
+ I I Q P+
Sbjct: 683 DKVIHI-DQSPI 693
Score = 35.4 bits (82), Expect = 0.16
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 613 QVGERGLKLSGGEKQRVAIARAILKNT---PILVFDEATSSL---DSITENNILSSLKTA 666
++G+ LSGGE QR+ +A+ + K + + + DE T+ L D +L L
Sbjct: 822 RLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL--V 879
Query: 667 SRNKTTICIAHRLSTIK 683
+ T + I H L IK
Sbjct: 880 DKGNTVVVIEHNLDVIK 896
Score = 30.8 bits (70), Expect = 4.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTI 526
N++ IP K V I G SGSGKS++
Sbjct: 14 NIDVEIPRDKLVVITGLSGSGKSSL 38
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 39.3 bits (92), Expect = 0.008
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 621 LSGGEKQRVAIAR--AIL--KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
LSGGEK A+A AI + P V DE ++LD + +K S+ I I
Sbjct: 1067 LSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126
Query: 677 HRLSTIKH 684
HR T++
Sbjct: 1127 HRKGTMEA 1134
Score = 30.8 bits (70), Expect = 3.5
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 10/42 (23%)
Query: 487 VNF-SYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTII 527
F S+ D AIVG +GSGKS I+
Sbjct: 9 KGFKSFADPTEINFSPGFT---------AIVGPNGSGKSNIV 41
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 38.2 bits (90), Expect = 0.009
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 21/54 (38%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD 566
+ I GGSGSGK+T+ +Y IA++PQD
Sbjct: 9 IGIAGGSGSGKTTVASTIYEELGDE---------------------SIAVIPQD 41
>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated
Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like
families. RERG (Ras-related and Estrogen- Regulated
Growth inhibitor) and Ras-like 11 are members of a novel
subfamily of Ras that were identified based on their
behavior in breast and prostate tumors, respectively.
RERG expression was decreased or lost in a significant
fraction of primary human breast tumors that lack
estrogen receptor and are correlated with poor clinical
prognosis. Elevated RERG expression correlated with
favorable patient outcome in a breast tumor subtype that
is positive for estrogen receptor expression. In
contrast to most Ras proteins, RERG overexpression
inhibited the growth of breast tumor cells in vitro and
in vivo. RasL11 was found to be ubiquitously expressed
in human tissue, but down-regulated in prostate tumors.
Both RERG and RasL11 lack the C-terminal CaaX
prenylation motif, where a = an aliphatic amino acid and
X = any amino acid, and are localized primarily in the
cytoplasm. Both are believed to have tumor suppressor
activity.
Length = 166
Score = 37.6 bits (88), Expect = 0.009
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 10/47 (21%)
Query: 513 VAIVGGSGSGKST-IIRLLYRFF----EPNAGAIY-----IDGKNIN 549
+A++G SG GKS +R L + F EPN ++Y IDG+ ++
Sbjct: 2 IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVS 48
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 39.0 bits (91), Expect = 0.010
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 36/185 (19%)
Query: 492 IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV 551
I + + + N TI G+ V +VG +G GKST++ LL + G+ G
Sbjct: 9 IRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN----- 63
Query: 552 DLDSLRRHIAIVPQD-PVLFHDTILYNINYGDKS-KSYEETIEAAK-------LADLH-- 600
+A V Q+ P L + Y I+ GD+ + E + A +A +H
Sbjct: 64 ------WQLAWVNQETPALPQPALEYVID-GDREYRQLEAQLHDANERNDGHAIATIHGK 116
Query: 601 -NSIIKWP------------NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
++I W Q+ SGG + R+ +A+A++ + +L+ DE
Sbjct: 117 LDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 648 TSSLD 652
T+ LD
Sbjct: 177 TNHLD 181
Score = 31.7 bits (72), Expect = 1.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 613 QVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
+V E + SGGEK R+ +A + + +L+ DE T+ LD
Sbjct: 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
Score = 31.3 bits (71), Expect = 2.3
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+ I ++ + G + ++G +G+GKST+I+LL P +G I
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 38.2 bits (89), Expect = 0.012
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 620 KLSGGEKQRVAIARAILKNTP-ILVFDEATSSLDSITENNILSSLKTASRNK-TTI-CIA 676
+L+ GE Q+V IA A L N P +L+ DE T++++ T+ I L ++N TTI I+
Sbjct: 158 ELTEGECQKVMIAIA-LANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLIS 216
Query: 677 HRLSTIKHL 685
H L +
Sbjct: 217 HDLQMLSQW 225
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 37.8 bits (87), Expect = 0.014
Identities = 20/193 (10%), Positives = 56/193 (29%), Gaps = 5/193 (2%)
Query: 485 RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+ F + I F + + + ++ + +
Sbjct: 54 IPLEFEIEEFLIDGIRYRYGFELDKEDILEELLYEYRKGEELL-FERERSKESFEKSPEK 112
Query: 545 GKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNS-I 603
+ + + L ++++ + + +L + + +L L
Sbjct: 113 KRELRGLREVLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKR 172
Query: 604 IKWPNHYETQVGERGLKLSGGEKQRVAIARAIL---KNTPILVFDEATSSLDSITENNIL 660
+ + + +S G K+ +A+ A+L +L+ DE + L ++
Sbjct: 173 LFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLV 232
Query: 661 SSLKTASRNKTTI 673
LK S +
Sbjct: 233 ELLKELSEKGAQL 245
Score = 35.5 bits (81), Expect = 0.082
Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 3/197 (1%)
Query: 514 AIVGGSGSGKSTIIRLLYRFFEP-NAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD 572
I+G +GSGKS +++ L + G G N+ L L I +
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEIEE 62
Query: 573 TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632
++ I Y + +E I L + ++ E + +
Sbjct: 63 FLIDGIRYRYGFELDKEDILEELLYEYRKGEELLFERERSKESFEKSPEKKRELRGLREV 122
Query: 633 RAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHR 692
+L + A+ + L + L +K L
Sbjct: 123 LLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNI--ELKLLDLVKRLFLESDLL 180
Query: 693 KTSTNLVRGNSSAMRSM 709
+ L++G S + +
Sbjct: 181 RLLKLLIKGISDGTKRL 197
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 37.3 bits (87), Expect = 0.016
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPN 537
+ I GGSGSGK+T+ + L
Sbjct: 11 IGIAGGSGSGKTTVAKELSEQLGVE 35
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 36.4 bits (84), Expect = 0.017
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 508 PAGKSVAIVGGSGSGKSTIIRLL--------YRFFEPNAGAIYIDGKNINDVDLDSLRRH 559
P K++ + G G+GK+T+ R + F NA + +R
Sbjct: 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLL 76
Query: 560 IAIVPQDP--VLF 570
+ + VLF
Sbjct: 77 FELAEKAKPGVLF 89
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 33.7 bits (78), Expect = 0.023
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 487 VNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTII 527
VN+ D HT I K + G SGSGKST+I
Sbjct: 7 VNWGTFDGHTIPI---------DPKGTLLTGPSGSGKSTLI 38
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 37.6 bits (87), Expect = 0.027
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 621 LSGGEKQRVAIA--RAILKN--TPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
LSGGEK VA+A AI K P + DE ++LD + + + LK S+N I I+
Sbjct: 1079 LSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQFIVIS 1138
Query: 677 HR 678
R
Sbjct: 1139 LR 1140
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 35.3 bits (81), Expect = 0.028
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
+ I G GSGKST+ + L
Sbjct: 2 ILITGPPGSGKSTLAKKL 19
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 37.6 bits (87), Expect = 0.029
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 621 LSGGEKQ------RVAIARAILKNTPILVFDEATSSLDSITENN----ILSSLKTASRNK 670
LSGGEK RVA+A+ + + +L+ DE T+ LD N I SLK +S
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861
Query: 671 TTICIAH 677
I I+H
Sbjct: 862 QVIMISH 868
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 36.7 bits (85), Expect = 0.032
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL--YRFFEPNAGAIYIDGKNINDVD-L 553
K I LN + G+ AI+G +GSGKST+ L +E G + GK++ ++
Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73
Query: 554 DSLRRHIAIVPQDPV--------LFHDTILYNINYGDKSKSYEETIEAAKLADLHN---S 602
D I + Q PV F T L + +S +E ++ DL +
Sbjct: 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAV----RSYRGQEPLDRFDFQDLMEEKIA 129
Query: 603 IIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
++K P T+ G SGGEK+R I + + + + DE+ S LD
Sbjct: 130 LLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLD 177
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 35.6 bits (82), Expect = 0.036
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR---RHIAI 562
SV + G SG+GK++++R L AG +N +LR R +
Sbjct: 20 RSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQLLR 79
Query: 563 VPQDPVLFHDTIL 575
+L L
Sbjct: 80 ELAAELLLLREAL 92
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 36.7 bits (85), Expect = 0.054
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641
+K +E +E +L +L ++I+ P G GL S +++R+ IA ++ N I
Sbjct: 990 EKMMFVDEVMELVELDNLKDAIVGLP-------GVTGL--STEQRKRLTIAVELVANPSI 1040
Query: 642 LVFDEATSSLDSITENNILSSLK-TASRNKTTICIAHRLS 680
+ DE TS LD+ ++ +++ T +T +C H+ S
Sbjct: 1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080
Score = 36.0 bits (83), Expect = 0.089
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 611 ETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK 664
+T VG+ ++ +SGG+K+RV I+ T L DE ++ LDS T I+ L+
Sbjct: 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQ 380
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 35.7 bits (83), Expect = 0.057
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 621 LSGGEKQRVAIAR--AILK--NTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
LSGG+K VA+A AI K P +FDE ++LD+ + + +K S I
Sbjct: 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTT 218
Query: 677 HR---LSTIKHLLGYKAHRKTST 696
R L G K K ST
Sbjct: 219 FRPELLEVADKFYGVKFRNKVST 241
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 36.2 bits (84), Expect = 0.059
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 512 SVAIVGGSGSGKSTII-RLLYRFFEPNAGAIYIDGKN 547
++ IVG SGSGKST++ L R I ID K
Sbjct: 3 NMLIVGPSGSGKSTLLKLLALRLLARGGRVIVIDPKG 39
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 34.5 bits (80), Expect = 0.083
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 23/94 (24%)
Query: 514 AIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD------LDSLRRHIAIVPQDP 567
AI G GKS+++ L G+N+ V D +R+ ++P P
Sbjct: 1 AIFGRPNVGKSSLLNALL-------------GQNVGIVSPIPGTTRDPVRKEWELLPLGP 47
Query: 568 VLFHDT--ILYNINYGDKSKSYEETIEAAKLADL 599
V+ DT + G + EE + A ADL
Sbjct: 48 VVLIDTPGLDEEGGLGRERV--EEARQVADRADL 79
>gnl|CDD|225713 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 34.7 bits (80), Expect = 0.085
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 35/143 (24%)
Query: 511 KSVAIVGGSGSGKSTIIRLLYRFF------EPNAGAIYIDGKNINDVDL----------- 553
K+VAI+GG SGKST++ L F E G Y+ D L
Sbjct: 9 KTVAILGGESSGKSTLVNKLANIFNTTSAWEY--GREYVFEHLGGDEALQYSDYAKIALG 66
Query: 554 -----DSLRRH---IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK 605
D+ R+ +A + D + T + Y + + + + A DL ++
Sbjct: 67 QAAYEDAAVRYANKVAFIDTDFLT---TQAFCKKYEGREHPFLQALIAEYRFDLT--LLL 121
Query: 606 WPNHYETQVGERGLKLSGGEKQR 628
PN T GL+ G QR
Sbjct: 122 EPN---TPWVADGLRSLGSSVQR 141
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 33.8 bits (78), Expect = 0.086
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 512 SVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
+ G SGSGK+T++R L R PN +Y++ + L R I
Sbjct: 6 IGVLTGESGSGKTTLLRRLARQL-PNRRVVYVE--APSLGTPKDLLRKIL 52
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 34.6 bits (80), Expect = 0.092
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 619 LKLSGGEKQRVAIARAI----LKNTPILVFDEATSSLDSITENNILSSLK-TASRNKTTI 673
L+LSGGEK+ A+A + LK P+ + DE LD + ++ + I
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 674 CIAHRL 679
I H
Sbjct: 136 VITHLP 141
Score = 33.1 bits (76), Expect = 0.30
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 490 SYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIR 528
+ F + T G I G +GSGKSTI+
Sbjct: 1 KIVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILD 39
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 34.7 bits (81), Expect = 0.098
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 621 LSGGEKQRVAIAR--AIL--KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
LSGGEK A+A AI + +P V DE ++LD LK S+ I I
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173
Query: 677 HRLSTIK---HLLG 687
HR T++ L G
Sbjct: 174 HRKGTMEAADRLYG 187
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 35.6 bits (82), Expect = 0.10
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA----IYIDGKNINDVDLDSLRR-HIA 561
+P+GK+V ++G GSGK+T+I L P G +Y+ N++D D D R ++
Sbjct: 42 LPSGKNVLVLGEDGSGKTTLIAKLQGVEHPKKGRGLEYLYL---NVHDEDRDDQTRCNVW 98
Query: 562 IVPQDPVLFHDTILYNINYGDKSKSYEETI 591
I+ D +H +L + ++S +T+
Sbjct: 99 ILDGDL--YHKGLL---KFALNAESLADTL 123
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 34.5 bits (80), Expect = 0.12
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 621 LSGGEKQ------RVAIARAILKNTPILVFDEATSSLDSITENNILSSL 663
SGGEK R+A+A N IL DE T++LD E NI SL
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESL 161
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 34.0 bits (79), Expect = 0.12
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ 565
+AI G +GSGKST+ +LL + G Y+D I ++ L +A +P+
Sbjct: 2 IAIDGPAGSGKSTVAKLLAKKL----GLPYLDTGGIRTEEVGKLASEVAAIPE 50
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 34.6 bits (80), Expect = 0.13
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
G + I G G+GK+T LL E
Sbjct: 3 GMFIVIEGIDGAGKTTQAELLKERLEER 30
>gnl|CDD|233448 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. The NadR protein of E.
coli and closely related bacteria is both enzyme and
regulatory protein. The first 60 or so amino acids,
N-terminal to the region covered by this model, is a
DNA-binding helix-turn-helix domain (pfam01381)
responsible for repressing the nadAB genes of NAD de
novo biosynthesis. The NadR homologs in Mycobacterium
tuberculosis, Haemophilus influenzae, and others appear
to lack the repressor domain. NadR has recently been
shown to act as an enzyme of the salvage pathway of NAD
biosynthesis, nicotinamide-nucleotide
adenylyltransferase; members of this family are presumed
to share this activity. E. coli NadR has also been found
to regulate the import of its substrate, nicotinamide
ribonucleotide, but it is not known if the other members
of this model share that activity.
Length = 325
Score = 34.8 bits (80), Expect = 0.16
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 491 YIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE----PNAGAIYIDGK 546
+I + + F K+VAI+GG +GKST++ L F Y++ K
Sbjct: 152 HIPREVRPFFV---------KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEK 202
Query: 547 NINDVDL 553
D L
Sbjct: 203 LGGDEAL 209
>gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 34.3 bits (79), Expect = 0.17
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 464 IKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGK 523
+ ++ + P T EF+ IDK ++L G+++ ++G G GK
Sbjct: 63 RRLRSASFPAKKTFEEFDFEFQPG----IDKKALEDLASLVEFFERGENLVLLGPPGVGK 118
Query: 524 STII 527
+ +
Sbjct: 119 THLA 122
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 34.5 bits (80), Expect = 0.18
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 11/57 (19%)
Query: 512 SVAIVGGSGSGKSTIIR-LLYRFFEPNAGAI-----YIDGKNINDVDLDSLRRHIAI 562
++A+VG SGSGK+T+ LLY GAI DG ++D D + +R ++I
Sbjct: 1 NIALVGHSGSGKTTLAEALLYA-----TGAIDRLGRVEDGNTVSDYDPEEKKRKMSI 52
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 33.9 bits (78), Expect = 0.19
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFF 534
P G + I GGSGSGK+T+ R +Y
Sbjct: 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 33.8 bits (78), Expect = 0.21
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPN 537
+ G G+GK+T+I LL E
Sbjct: 3 IVFEGIDGAGKTTLIELLAERLEAR 27
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 33.3 bits (77), Expect = 0.22
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
+ I GG +GK+T++ L
Sbjct: 2 IVITGGPSTGKTTLLEAL 19
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 33.7 bits (78), Expect = 0.28
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548
+L+ + G+ I+G +G+GK+T++ ++ P+ G++ G ++
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL 66
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 33.3 bits (77), Expect = 0.28
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLY 531
G + + G SG GKST+++ L
Sbjct: 4 GLLIVLSGPSGVGKSTLVKALL 25
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 33.7 bits (78), Expect = 0.29
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 621 LSGGEKQRVAIA-RAIL---KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
SGGE R+ +A +AIL P L+FDE + + + LK SR+ +CI
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCIT 230
Query: 677 H 677
H
Sbjct: 231 H 231
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 34.1 bits (78), Expect = 0.35
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 473 LVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLY- 531
L LT SN +F D F I+ H ++ S L+ + V I G SG GK+TI R L+
Sbjct: 175 LNLTPSN---DFED--FVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS 229
Query: 532 RFFEPNAGAIYID 544
R +++ID
Sbjct: 230 RLSRQFQSSVFID 242
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 33.6 bits (77), Expect = 0.36
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 39/205 (19%)
Query: 492 IDKHTKRIFSNLN---FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548
I KH + F L+ G + +VG +GSGKST+ ++ P G + +G
Sbjct: 29 IPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG--- 85
Query: 549 NDVDLDSLRRHIAIVPQDPVLFHDTILYNINY-----GDKSKSYE----ETIEAAKLADL 599
+V + IAI + T + NI + G K K + + IE ++L +
Sbjct: 86 -EVSV------IAI--SAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF 136
Query: 600 HNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI 659
+K K S G + ++ + I N ILV DEA S D
Sbjct: 137 IYQPVK--------------KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC 182
Query: 660 LSSL-KTASRNKTTICIAHRLSTIK 683
L + + +NKT ++H L ++
Sbjct: 183 LDKIYEFKEQNKTIFFVSHNLGQVR 207
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 30.8 bits (70), Expect = 0.38
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
+AI GGSGSGKST+ + L
Sbjct: 2 IAITGGSGSGKSTVAKKL 19
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 33.8 bits (78), Expect = 0.38
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 498 RIFSNLNFTIPAGKSVAIV-GGSGSGKSTIIRLLYRFFEPNAGAIYIDGK 546
+ + + K V ++ G +GSGK+T+ RL Y +
Sbjct: 3 ASYDDWGNELDDLKKVNLIYGRNGSGKTTLSRLFRSLELGRIHEKYSNCS 52
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 31.0 bits (71), Expect = 0.42
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 15/52 (28%)
Query: 620 KLSGGEKQR---VAIARAIL------KNTP---ILVFDEATSSLDSITENNI 659
LSGGEKQ +A+A A+ + P ++ DEA + LD E NI
Sbjct: 22 TLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLD---EENI 70
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 33.9 bits (78), Expect = 0.43
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 621 LSGGEKQRVAIAR--AIL--KNTPILVFDEATSSLDSITENNI---LSSLKTASRNKTTI 673
LSGGEK A+A AI K P + DE + LD + N+ + LK S+N I
Sbjct: 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLD---DANVERFANLLKEFSKNTQFI 1146
Query: 674 CIAHR 678
I H
Sbjct: 1147 VITHN 1151
>gnl|CDD|234015 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 33.5 bits (77), Expect = 0.45
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
I L I + K++ I GG+GSGK+T ++ L
Sbjct: 130 AGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEI 168
>gnl|CDD|233994 TIGR02746, TraC-F-type, type-IV secretion system protein TraC. The
protein family described here is common among the F, P
and I-like type IV secretion systems. Gene symbols
include TraC (F-type), TrbE/VirB4 (P-type) and TraU
(I-type). The protein conyains the Walker A and B motifs
and so is a putative nucleotide triphosphatase.
Length = 797
Score = 33.8 bits (78), Expect = 0.48
Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 30/165 (18%)
Query: 375 QAALKTSTSLATLNFGQSAIFSTAMTLSMIF-AAREIAHGN-LTVGDLVMVNGLLFQLSM 432
+A SL ++ + +F+ L AA+ N + + + F ++
Sbjct: 307 EAIASGGDSLVSMYY-NVLLFTNPDNLRRDVEAAKSSFRKNGFDLAEDKRIQLQAFLAAL 365
Query: 433 PLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLT---TSNASIEF--RDV 487
P E + ++T+ + N N LPL+ T + + R
Sbjct: 366 PF-NPTEGLFEDLKKAGRVRTLSS--------ANAVNLLPLIADWKGTKGSGLLLPTRRG 416
Query: 488 NFSYIDKHTKRIFSN--LNFTIPAGKSVAIVGGSGSGKSTIIRLL 530
S D F + N+ I A+VGGSG+GKS ++ L
Sbjct: 417 QLSAFD-----PFDSDSTNYNI------AVVGGSGAGKSFFMQEL 450
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 31.8 bits (73), Expect = 0.51
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVL 569
K + I G GK+T++ + +NI ++LD R +
Sbjct: 2 NKIIVITGPRQVGKTTLLLQFLKELLS---------ENILYINLDDPRFLRLALLDLLEE 52
Query: 570 FHDTILYNINY 580
F +L Y
Sbjct: 53 FLKLLLPGKKY 63
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 33.1 bits (76), Expect = 0.52
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
V S + R S ++ +VG SG GK+T I L+ G +D
Sbjct: 3 YVGISNLPNQRHRKLSKKGIDF----TIMVVGESGLGKTTFINTLF-------GTSLVDE 51
Query: 546 KNINDVDLDSLRRHIAIVPQDPVLFHDTILYNIN------YGDK---SKSYEETIE 592
I+D+ + + I L D N+ +GD SK +E ++
Sbjct: 52 TEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVD 107
>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related
GTPases. These proteins are found in bacteria,
eukaryotes, and archaea. They all exhibit a circular
permutation of the GTPase signature motifs so that the
order of the conserved G box motifs is G4-G5-G1-G2-G3,
with G4 and G5 being permuted from the C-terminal region
of proteins in the Ras superfamily to the N-terminus of
YlqF-related GTPases.
Length = 146
Score = 32.0 bits (73), Expect = 0.54
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD 554
G V +VG GKS+ I L F+ G+I K DV LD
Sbjct: 91 GIRVGVVGLPNVGKSSFINALLNKFKLKVGSIPGTTKLQQDVKLD 135
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 32.6 bits (75), Expect = 0.54
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTI 526
N++ IP K V I G SGSGKS++
Sbjct: 13 NVDVDIPRNKLVVITGVSGSGKSSL 37
Score = 32.6 bits (75), Expect = 0.67
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 621 LSGGEKQRVAIARAILKN-TPIL-VFDEATSSL---DSITENNILSSLKTASRNKTTICI 675
LSGGE QR+ +A I T +L V DE + L D+ L L+ T + +
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG--NTVLVV 195
Query: 676 AHRLSTIKH 684
H TI+
Sbjct: 196 EHDEDTIRA 204
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 33.4 bits (77), Expect = 0.61
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 504 NFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
TIP V +VG SGSGKST R + F+P
Sbjct: 2 KITIPELSLVVLVGASGSGKSTFAR---KHFKP 31
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 31.9 bits (73), Expect = 0.65
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 506 TIPAGKSVAIVGGSGSGKSTIIRLLY-RFFEPNAGAIYIDGKNINDV 551
P G + I G +GSGK+TI + LY R + IY+DG + ++
Sbjct: 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI 49
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 31.3 bits (72), Expect = 0.71
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 515 IVGGSGSGKSTIIRLLYRFFEPN 537
+ G SG GKST+++ L F+PN
Sbjct: 4 LSGPSGVGKSTLLKRLLEEFDPN 26
>gnl|CDD|131701 TIGR02653, Lon_rel_chp, conserved hypothetical protein. This model
describes a protein family of unknown function, about
690 residues in length, in which some members show
C-terminal sequence similarity to pfam05362, which is
the Lon protease C-terminal proteolytic domain, from
MEROPS family S16. However, the annotated catalytic
sites of E. coli Lon protease are not conserved in
members of this family. Members have a motif
GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif
GxxGxGK[ST] [Hypothetical proteins, Conserved].
Length = 675
Score = 32.9 bits (75), Expect = 0.71
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 481 SIEFRDVNFSYID-KHTKRIFSNL-----NFTIPAG----KSVAIVGGSGSGKSTIIRLL 530
EF DVNFSYID + + F ++ + IPAG V V + SGK L
Sbjct: 456 GFEFFDVNFSYIDNESLEEFFVSVPEQGGSKLIPAGPPKPGVVYAVTQNESGKVG----L 511
Query: 531 YRF 533
YRF
Sbjct: 512 YRF 514
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 32.4 bits (75), Expect = 0.72
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLL 530
GK+ +VG SG GKST++ L
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNAL 105
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 32.4 bits (74), Expect = 0.80
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 507 IPAGKSVAIVGGSGSGKSTIIRLLYRF 533
+P G V I G G+GK+ +F
Sbjct: 20 LPRGSVVLITGPPGTGKTI---FALQF 43
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 32.6 bits (74), Expect = 0.89
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA-GAIYIDGKNINDVDLDSL 556
R F NL+ T ++ IVG +GSGK+T++ + IY+ K++ D
Sbjct: 12 RCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSLKIELDDIE 71
Query: 557 RR 558
Sbjct: 72 LC 73
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 31.7 bits (73), Expect = 0.94
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFE 535
G + I G G+GKST I LL E
Sbjct: 3 GMFITIEGIDGAGKSTQIELLKELLE 28
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 31.3 bits (72), Expect = 1.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
+ + GG GSGKST+ +LL
Sbjct: 2 IGLTGGIGSGKSTVAKLL 19
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 32.2 bits (74), Expect = 1.1
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 510 GKSVAIVGGSGSGKSTII-RLL 530
GK+VA++G SG GKST++ LL
Sbjct: 195 GKTVALLGSSGVGKSTLVNALL 216
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 31.8 bits (73), Expect = 1.2
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 513 VAIVGGSGSGKSTIIRLL---YRFFEPNAGAIY 542
+AI G +GSGKST+ ++L F + GA+Y
Sbjct: 7 IAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMY 39
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 31.0 bits (71), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLL 530
GK+ + G SG GKST++ L
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNAL 55
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 30.7 bits (70), Expect = 1.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562
+ ++G SGSGKST+ + L GA +IDG D L I
Sbjct: 2 IVVMGVSGSGKSTVGKALAERL----GAPFIDG--------DDLHPPANI 39
>gnl|CDD|234401 TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb. This
model represents the C-terminal domain or EccCb subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 566
Score = 31.9 bits (73), Expect = 1.5
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLL 530
++ + AG VAIVGG SGKST +R L
Sbjct: 73 VDLSGAAG-HVAIVGGPQSGKSTALRTL 99
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 30.4 bits (69), Expect = 1.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
V +VG SGK+T+IR L
Sbjct: 3 VLVVGPKDSGKTTLIRKL 20
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 30.7 bits (70), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI-DGKNI 548
G ++ G SGSGKSTI L R ++Y+ DG N+
Sbjct: 2 GCTIWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNV 41
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 32.0 bits (72), Expect = 1.6
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFF 534
VA+VG G+GKST+IR L R F
Sbjct: 72 VAVVGPPGTGKSTLIRSLVRRF 93
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains (pfam00036),
that may bind calcium. They are also larger than
classical small GTPases. It has been proposed that they
are involved in mitochondrial homeostasis and apoptosis.
Length = 116
Score = 30.1 bits (68), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 513 VAIVGGSGSGKSTII-RLLYRFFEPN 537
V ++G GSGKS+++ +L+ F P
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPE 27
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 31.1 bits (71), Expect = 1.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
+ + GG GSGKST+ ++L
Sbjct: 5 IGLTGGIGSGKSTVAKIL 22
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to
form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically "activated" sulfate
form important for the assimilation of inorganic
sulfate.
Length = 149
Score = 30.5 bits (70), Expect = 1.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 515 IVGGSGSGKSTIIRLLYR-FFEPNAGAIYIDGKNI 548
+ G SGSGKSTI R L F+ +DG N+
Sbjct: 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 31.2 bits (72), Expect = 1.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+AI G +GSGK T+ ++L + G Y+D
Sbjct: 7 IAIDGPAGSGKGTVAKILAKKL----GFHYLD 34
>gnl|CDD|216584 pfam01580, FtsK_SpoIIIE, FtsK/SpoIIIE family. FtsK has extensive
sequence similarity to wide variety of proteins from
prokaryotes and plasmids, termed the FtsK/SpoIIIE
family. This domain contains a putative ATP binding
P-loop motif. It is found in the FtsK cell division
protein from E. coli and the stage III sporulation
protein E SpoIIIE, which has roles in regulation of
prespore specific gene expression in B. subtilis. A
mutation in FtsK causes a temperature sensitive block in
cell division and it is involved in peptidoglycan
synthesis or modification. The SpoIIIE protein is
implicated in intercellular chromosomal DNA transfer.
Length = 201
Score = 30.8 bits (70), Expect = 1.8
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 513 VAIVGGSGSGKSTIIR-----LLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP 567
+ I G +GSGKST + L R ID K L+ L ++ V DP
Sbjct: 41 LLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDPKGGELAALEDLPHLLSPVATDP 100
>gnl|CDD|216796 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 30.8 bits (70), Expect = 2.0
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 511 KSVAIVGGSGSGKST----IIRLLYRFFEPNAGAIYID 544
+ AI+G +GSGKS ++ L + A + D
Sbjct: 24 RHFAILGSTGSGKSNTVAVLLEELLE--KKGATVLIFD 59
>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 30.5 bits (70), Expect = 2.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 510 GKSVAIVGGSGSGKSTIIRLL-----YRFF 534
G ++ ++G G+GKSTI RLL Y F
Sbjct: 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFI 33
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 30.7 bits (70), Expect = 2.2
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 517 GGSGSGKSTIIRLLYR-FFEPNAGAIYIDGKNI 548
G SGSGKSTI L F +DG N+
Sbjct: 30 GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 30.5 bits (69), Expect = 2.3
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
+AI+G SGSGKST+ R L
Sbjct: 3 IAIIGYSGSGKSTLARKL 20
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 29.7 bits (67), Expect = 2.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
+ I G GSGK+T+ + L
Sbjct: 1 ILITGTPGSGKTTLAKEL 18
>gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobA/MobB;
Provisional.
Length = 366
Score = 31.3 bits (71), Expect = 2.3
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 21/85 (24%)
Query: 497 KRIFSNLNF--------TIPAG------KSVAIVGGSGSGKSTIIRLLYRFFEPN---AG 539
K F N+N IP G + +VG SG+GK+T++ L G
Sbjct: 178 KDAFFNVNTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIG 237
Query: 540 AIYIDGKNINDVDL---DSLRRHIA 561
I + D+D DS R A
Sbjct: 238 LIKHSHHRV-DIDKPGKDSHRLRAA 261
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as 5-flurrouridine
and cyclopentenyl-cytidine.
Length = 198
Score = 30.6 bits (70), Expect = 2.4
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 19/67 (28%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFF-EPNAGAIYID-------------GKNIND-----VDL 553
+ I GGSGSGK+T+ + P I D KN N D
Sbjct: 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDF 61
Query: 554 DSLRRHI 560
D L H+
Sbjct: 62 DLLISHL 68
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 29.9 bits (68), Expect = 2.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 507 IPAGKSVAIVGGSGSGKSTI 526
+P G + G G+GKST+
Sbjct: 30 LPRGGLTLLAGAPGTGKSTL 49
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 31.3 bits (71), Expect = 2.6
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 496 TKRIFSNLNFTIPAGKSVAIVGGSGSGKSTII---------RLLYRFFEPNAGAIYIDGK 546
TK +L ++P G+ + G SGSGKS++I + + F N + I
Sbjct: 607 TKHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSN---LSIQWG 663
Query: 547 NINDV 551
I+ +
Sbjct: 664 AISRL 668
Score = 29.8 bits (67), Expect = 8.1
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 614 VGERGLKLSGGEKQRVAIARAIL---KNTPILVFDEATSSLDSITENNILSSLKT-ASRN 669
+G+ LS EK + IA+ + K+ + + DE +SLD+ ++ +L L+T S
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752
Query: 670 KTTICIAHRLSTIKH 684
+ I I H + +K
Sbjct: 1753 HSVIYIDHDPALLKQ 1767
Score = 29.4 bits (66), Expect = 10.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTII 527
NLN + P VAI G SGSGK++++
Sbjct: 1507 QNLNVSAPLHSLVAISGVSGSGKTSLL 1533
>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family
primarily contains translation initiation, elongation
and release factors. The GTP translation factor family
consists primarily of translation initiation,
elongation, and release factors, which play specific
roles in protein translation. In addition, the family
includes Snu114p, a component of the U5 small nuclear
riboprotein particle which is a component of the
spliceosome and is involved in excision of introns,
TetM, a tetracycline resistance gene that protects the
ribosome from tetracycline binding, and the unusual
subfamily CysN/ATPS, which has an unrelated function
(ATP sulfurylase) acquired through lateral transfer of
the EF1-alpha gene and development of a new function.
Length = 183
Score = 30.3 bits (69), Expect = 2.9
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 513 VAIVGGSGSGKSTII-RLLYRFFEPNAGAIYIDGKNINDVDLDSL----RRHIAIVPQDP 567
V ++G GK+T+ LLY+ GAI + LD+L R I I
Sbjct: 2 VGVIGHVDHGKTTLTGSLLYQ-----TGAID-RRGTRKETFLDTLKEERERGITIKTGVV 55
Query: 568 VLFHDTILYNI----NYGDKSKSYEETIEAAKLADL 599
N + D SK ET+ AD
Sbjct: 56 EFEWPKRRINFIDTPGHEDFSK---ETVRGLAQADG 88
>gnl|CDD|219158 pfam06745, KaiC, KaiC. This family represents a conserved region
within bacterial and archaeal proteins, most of which
are hypothetical. More than one copy is sometimes found
in each protein. This family includes KaiC, which is one
of the Kai proteins among which direct protein-protein
association may be a critical process in the generation
of circadian rhythms in cyanobacteria.
Length = 231
Score = 30.3 bits (69), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 507 IPAGKSVAIVGGSGSGKSTI 526
IP G+ V I GG G+GK+
Sbjct: 16 IPRGRVVLITGGPGTGKTIF 35
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 30.4 bits (69), Expect = 3.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFF 534
V +VG G GKST+IR L + +
Sbjct: 42 VVVVGPPGVGKSTLIRSLIKRY 63
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 30.7 bits (70), Expect = 3.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLL 530
AGK ++G SG GKST+I L
Sbjct: 163 AGKITVLLGQSGVGKSTLINAL 184
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 29.7 bits (67), Expect = 3.2
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 514 AIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI-VPQDPVLFHD 572
+VG G GKS+++ L G + ++ D + + ++ D
Sbjct: 1 VVVGRGGVGKSSLLNAL-------LGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVD 53
Query: 573 TILYNINYGDKSKSYEETIEAAKLADL 599
T ++ E + ADL
Sbjct: 54 T--PGLDEFGGLGREELARLLLRGADL 78
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.9 bits (70), Expect = 3.3
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 621 LSGGEKQ------RVAIARAILKNTPI--LVFDEATSSLDSITENNILSSL-KTASRNKT 671
LSGGE+ R+A++ + + L DE +LD + L + S +
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875
Query: 672 TICIAH 677
I I+H
Sbjct: 876 IIIISH 881
Score = 29.7 bits (67), Expect = 7.0
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 500 FSNLNFTIPAGKSV-AIVGGSGSGKSTII 527
F +++ + IVG +G+GKS+I+
Sbjct: 14 FKDIDIEKLFDSGIFLIVGPNGAGKSSIL 42
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 28.8 bits (65), Expect = 3.9
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 23/95 (24%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD------LDSLRRHIAIVPQD 566
VA+VG GKST+I L G + V D + +
Sbjct: 2 VALVGRPNVGKSTLINALT-------------GAKVAIVSDYPGTTRDPILGV--LGLGR 46
Query: 567 PVLFHDT--ILYNINYGDKSKSYEETIEAAKLADL 599
++ DT ++ + G + + +EA + ADL
Sbjct: 47 QIILVDTPGLIEGASEGKGVEGFNRFLEAIREADL 81
>gnl|CDD|236151 PRK08099, PRK08099, bifunctional DNA-binding transcriptional
repressor/ NMN adenylyltransferase; Provisional.
Length = 399
Score = 30.4 bits (69), Expect = 4.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 488 NFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFF 534
+ YI + F ++VAI+GG SGKST++ L F
Sbjct: 206 YWEYIPTEVRPFFV---------RTVAILGGESSGKSTLVNKLANIF 243
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 29.9 bits (67), Expect = 4.8
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 513 VAIVGGSGSGKSTII-RLLYRFFEPNAGA----------IYIDGKNINDVDLD 554
+ ++G G GK+T++ RL+ F I +NI D
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). This protein,
adenylylsulfate kinase, is often found as a fusion
protein with sulfate adenylyltransferase. Important
residue (active site in E.coli) is residue 100 of the
seed alignment [Central intermediary metabolism, Sulfur
metabolism].
Length = 184
Score = 29.4 bits (66), Expect = 4.9
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 515 IVGGSGSGKSTIIRLLYR-FFEPNAGAIYIDGKNI 548
+ G SGSGKSTI L + +DG N+
Sbjct: 23 LTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 29.5 bits (67), Expect = 5.0
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560
+V + G G+GK+ + R L G N+ +D D LR +
Sbjct: 13 VAVLLGGQPGAGKTELARALLEEL---------GGGNVVRIDPDELRTYH 53
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 29.6 bits (67), Expect = 5.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
+ I+G G+GKST+ + L
Sbjct: 3 ILILGPPGAGKSTLAKKL 20
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 29.2 bits (66), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 513 VAIVGGSGSGKSTIIRLL---YRFFEPNA 538
+ + GG GSGKST+ L Y F +A
Sbjct: 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30
>gnl|CDD|215692 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac,
Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
pfam00063. As regards Rab GTPases, these are important
regulators of vesicle formation, motility and fusion.
They share a fold in common with all Ras GTPases: this
is a six-stranded beta-sheet surrounded by five
alpha-helices.
Length = 162
Score = 29.0 bits (66), Expect = 6.0
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 17/50 (34%)
Query: 513 VAIVGGSGSGKSTIIRLLYRF--------FEPNAGA------IYIDGKNI 548
+ +VG G GKS+ LL RF + P G I +DGK +
Sbjct: 2 LVLVGDGGVGKSS---LLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTV 48
>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide riboside.
Length = 187
Score = 29.2 bits (66), Expect = 6.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 515 IVGGSG---SGKSTIIRLLYRFFEPNAGAIYID 544
IVG SG SGK+T+ +LL R PN I+ D
Sbjct: 1 IVGISGVTNSGKTTLAKLLQRIL-PNCCVIHQD 32
>gnl|CDD|239534 cd03450, NodN, NodN (nodulation factor N) contains a single hot dog
fold similar to those of the peroxisomal
Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the
fatty acid synthase beta subunit. Rhizobium and related
species form nodules on the roots of their legume hosts,
a symbiotic process that requires production of Nod
factors, which are signal molecules involved in root
hair deformation and meristematic cell division. The
nodulation gene products, including NodN, are involved
in producing the Nod factors, however the role played by
NodN is unclear.
Length = 149
Score = 28.7 bits (65), Expect = 6.1
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 406 AARE-----IAHGNLTVGDLVMVNGLLFQLSMPLGF 436
AA E IAHG LT L ++ L QL G
Sbjct: 49 AAAEPFGGTIAHGFLT---LSLLPALTPQLFRVEGV 81
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 29.2 bits (66), Expect = 6.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
V + GG GSGKST+ R L
Sbjct: 8 VGVTGGIGSGKSTVCRFL 25
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 30.0 bits (68), Expect = 6.1
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 23/103 (22%)
Query: 434 LGFL-GSVYREVRQAFIDMQTMFTLMLKE--PTIKNKANALP---LVLTTSNASIEFRDV 487
L L G++Y VR+ + Q + +L+ + N VL T + S F
Sbjct: 371 LSQLPGNIYYNVRKRLLSSQNLASLIPFHNTNLGPFRGNPWGEPLTVLKTEDGS-PFYF- 428
Query: 488 NFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL 530
NF H ++ T I+G +G+GK+ ++ L
Sbjct: 429 NF-----HVG---EDVGHT-------LIIGPTGAGKTVLLSFL 456
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 29.6 bits (67), Expect = 6.2
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFF-EPNAGAIYIDGKNINDVDLDSL----RRHIAIVPQDP 567
+ + G SG GK+T +R L E I D D S R+ + I DP
Sbjct: 11 LGVAGDSGCGKTTFLRGLADLLGEELVTVICTD-------DYHSYDRKQRKELGITALDP 63
Query: 568 VLFHDTILY 576
+ I+Y
Sbjct: 64 RANNLDIMY 72
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 29.7 bits (67), Expect = 6.2
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 505 FTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV------DL--DSL 556
T+ G+ V I GSG GKST++ ++ R + I + G+ +V DL + L
Sbjct: 153 LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGL 212
Query: 557 RRHIAIV 563
+R I +V
Sbjct: 213 KRSIVVV 219
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 29.1 bits (66), Expect = 6.2
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 512 SVAIVGGSGSGKSTIIRLL-----YRFFE 535
++ ++G G+GK+T+ RLL F +
Sbjct: 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD 29
>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein.
Members of this family are found in a range of archaea
and eukaryotes and have hypothesised ATP binding
activity.
Length = 235
Score = 29.6 bits (67), Expect = 6.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 515 IVGGSGSGKSTIIRLLYRFFE 535
+VG +GSGK+T + L
Sbjct: 1 VVGPAGSGKTTFVGALSEILP 21
>gnl|CDD|184429 PRK13973, PRK13973, thymidylate kinase; Provisional.
Length = 213
Score = 29.1 bits (66), Expect = 6.3
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 517 GGSGSGKSTIIRLL 530
GG G+GKST IRLL
Sbjct: 10 GGEGAGKSTQIRLL 23
>gnl|CDD|223703 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 29.6 bits (67), Expect = 6.4
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 439 SVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASI-EFRDVNFSYIDKHTK 497
S + A + + ++L N S+ +I +F D + D
Sbjct: 76 SEANPILDATLPDGSRIQIVLGPEVSPN----------GSSFTIRKFSDEPITPEDLIEY 125
Query: 498 RIFS-----NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVD 552
S L I A KS+ I GG+ SGK+T++ L F P + I ++ ++
Sbjct: 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTI--EDTPELK 183
Query: 553 LD 554
L
Sbjct: 184 LP 185
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 29.5 bits (67), Expect = 6.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEP 536
+ +V SG KS + +L + E
Sbjct: 42 LLVVAESGERKSAVDKLAMKPLEE 65
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and
related proteins. The HDAC/HDAC-like family includes
Zn-dependent histone deacetylase classes I, II and IV
(class III HDACs, also called sirtuins, are
NAD-dependent and structurally unrelated, and therefore
not part of this family). Histone deacetylases catalyze
hydrolysis of N(6)-acetyl-lysine residues in histone
amino termini to yield a deacetylated histone (EC
3.5.1.98), as opposed to the acetylation reaction by
some histone acetyltransferases (EC 2.3.1.48).
Deacetylases of this family are involved in signal
transduction through histone and other protein
modification, and can repress/activate transcription of
a number of different genes. They usually act via the
formation of large multiprotein complexes. They are
involved in various cellular processes, including cell
cycle regulation, DNA damage response, embryonic
development, cytokine signaling important for immune
response and post-translational control of the acetyl
coenzyme A synthetase. In mammals, they are known to be
involved in progression of different tumors. Specific
inhibitors of mammalian histone deacetylases are an
emerging class of promising novel anticancer drugs.
Length = 279
Score = 29.3 bits (66), Expect = 7.0
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 24/123 (19%)
Query: 531 YRFFEPNAGAIYID---GKNINDVD-LDSLRRHIAIVPQ----DPVLF---HDTILYNIN 579
Y F I+ + D + LD++ R I+ V + + V+ HDT +
Sbjct: 170 YPFGRGKGKGYKINVPLEDGLGDEEYLDAVERVISKVLEEFEPEVVVLQFGHDTHEGD-R 228
Query: 580 YGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNT 639
G + S + ++ A+ I+K E G L + GG A AR
Sbjct: 229 LGGFNLSEKGFVKLAE-------IVK-----EFARGGPILMVLGGGYNPEAAARIWTAII 276
Query: 640 PIL 642
L
Sbjct: 277 KEL 279
>gnl|CDD|224930 COG2019, AdkA, Archaeal adenylate kinase [Nucleotide transport and
metabolism].
Length = 189
Score = 28.9 bits (65), Expect = 7.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 511 KSVAIVGGSGSGKSTIIRLLYR 532
K V I G G GK+T++++ +
Sbjct: 5 KVVVITGVPGVGKTTVLKIALK 26
>gnl|CDD|181459 PRK08533, PRK08533, flagellar accessory protein FlaH; Reviewed.
Length = 230
Score = 29.3 bits (66), Expect = 7.4
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 507 IPAGKSVAIVGGSGSGKSTII-RLLYRFFEPNAGAIYI 543
IPAG + I G +GKS + RL Y F + Y+
Sbjct: 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYV 58
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 29.5 bits (67), Expect = 7.8
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 513 VAIVGGSGSGKSTII-RLLYRFFEPNAGAIYI-----DGKNINDVDLDSLRRHIAIVPQD 566
+ I+ +GK+T+ R+L+ G I+ DG + D R I I
Sbjct: 11 IGILAHIDAGKTTLTERILFY-----TGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA 65
Query: 567 PVLFHDTILYNI 578
D N+
Sbjct: 66 TSCDWDNHRINL 77
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 29.5 bits (66), Expect = 8.0
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 115 EVTSQEMIKAMLTHIWPKDEPQIRNRVKVAMGLLYAVD 152
E EM+ +H IR+ + +A G+L +
Sbjct: 635 EDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSN 672
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo and
salvage pathways of DTTP synthesis. Catalytic activity:
ATP + thymidine 5'-phosphate = ADP + thymidine
5'-diphosphate [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 28.9 bits (65), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
G + I G G+GK+T LL + + N
Sbjct: 2 RGMFIVIEGIDGAGKTTQANLLKKLLQEN 30
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 29.6 bits (67), Expect = 8.4
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLY-RFFEPNAGAIYIDGKNINDVDLDSLRRHI 560
G +V G SG+GKSTI + L + E + G+ + +D D +R+H+
Sbjct: 392 GFTVFFTGLSGAGKSTIAKALMVKLME-------MRGRPVTLLDGDVVRKHL 436
>gnl|CDD|227267 COG4930, COG4930, Predicted ATP-dependent Lon-type protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 683
Score = 29.5 bits (66), Expect = 8.5
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 480 ASIEFRDVNFSYIDKHTKRIF------SNLNFTIPAGKS----VAIVGGSGSGKSTIIRL 529
EF DVNFSYID T F + IPAG V +V + SG + +
Sbjct: 463 GGGEFFDVNFSYIDNETLEEFFVSVPEQGGSELIPAGMPKPGVVHLVTQAESGMTGL--- 519
Query: 530 LYRF 533
YRF
Sbjct: 520 -YRF 522
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 29.0 bits (66), Expect = 8.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTII 527
+L I G+ + I GGSG+GK+ ++
Sbjct: 7 DLLLPIGKGQRIGIFGGSGTGKTVLL 32
>gnl|CDD|224142 COG1221, PspF, Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms].
Length = 403
Score = 29.3 bits (66), Expect = 9.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI 543
P+G V I+G +G+GK RL++ A A +I
Sbjct: 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFI 134
>gnl|CDD|235210 PRK04040, PRK04040, adenylate kinase; Provisional.
Length = 188
Score = 28.7 bits (65), Expect = 9.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 510 GKSVAIVGGSGSGKSTIIRLL 530
K V + G G GK+T++
Sbjct: 2 MKVVVVTGVPGVGKTTVLNKA 22
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.130 0.362
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,280,927
Number of extensions: 3794386
Number of successful extensions: 5086
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4656
Number of HSP's successfully gapped: 628
Length of query: 816
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 711
Effective length of database: 6,280,432
Effective search space: 4465387152
Effective search space used: 4465387152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.5 bits)