RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4347
(816 letters)
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 406 bits (1047), Expect = e-137
Identities = 119/258 (46%), Positives = 166/258 (64%), Gaps = 4/258 (1%)
Query: 427 LFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRD 486
+ + FIDM+ MF L+ +E +K+ A PL IEF +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQ--KGRIEFEN 58
Query: 487 VNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGK 546
V+FSY D + +++FT+ G+++A+VG SG+GKSTI+RLL+RF++ ++G I IDG+
Sbjct: 59 VHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ 116
Query: 547 NINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKW 606
+I+ V SLR HI +VPQD VLF+DTI NI YG + +E AA+ A +H++I+ +
Sbjct: 117 DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF 176
Query: 607 PNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTA 666
P Y TQVGERGLKLSGGEKQRVAIAR ILK I++ DEATS+LD+ E I +SL
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236
Query: 667 SRNKTTICIAHRLSTIKH 684
N+TTI +AHRLST+ +
Sbjct: 237 CANRTTIVVAHRLSTVVN 254
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 390 bits (1003), Expect = e-126
Identities = 166/547 (30%), Positives = 249/547 (45%), Gaps = 51/547 (9%)
Query: 149 YAVDELNTGIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQ 208
+ G++++ AL IA I + I I +R + +
Sbjct: 35 LLIKYAIDGVINNHALTTDEKVHHLTIA----IGIALFIFVIVRPPIEFIRQYLAQWTSN 90
Query: 209 RSIRKIAKNVFLHLHNLDLAFHLNRQTGAL-SKII-DRGSRGINFVLSAMVFNIVPTIFE 266
+ + I K ++ HL L F+ N Q G + S++I D + + NI
Sbjct: 91 KILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQ--TKDFILTGLMNIWLDCIT 148
Query: 267 LALISSILSYKCGSEFSLLAVSCVGIYTAYTLSITQW-RTQFR--------VNMNKAENE 317
+ + SI+ + + +L A+ Y R R V E
Sbjct: 149 IIIALSIMFFL-DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERV 207
Query: 318 AGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAA 377
G VK F E EA ++ + ALK
Sbjct: 208 QGIS---------VVKSFAIEDNEAKNFDKKNTNFLTRALK-----------------HT 241
Query: 378 LKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFL 437
+ S A +N + + + A G++TVG L G L L PL L
Sbjct: 242 RWNAYSFAAINT----VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRL 297
Query: 438 GSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTK 497
+ + + Q+F M +F L+ ++ IKN A P+ I+ V+F Y D
Sbjct: 298 VASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPI--EIKQGRIDIDHVSFQYNDNEAP 355
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLR 557
I ++N +I G++VA VG SG GKST+I L+ RF++ +G I IDG NI D SLR
Sbjct: 356 -ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414
Query: 558 RHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGER 617
I +V QD +LF DT+ NI G + + EE +EAAK+A+ H+ I+ P Y+T+VGER
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474
Query: 618 GLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAH 677
G+KLSGG+KQR++IAR L N PIL+ DEATS+LD +E+ I +L S+++TT+ +AH
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534
Query: 678 RLSTIKH 684
RLSTI H
Sbjct: 535 RLSTITH 541
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 381 bits (982), Expect = e-123
Identities = 145/512 (28%), Positives = 248/512 (48%), Gaps = 42/512 (8%)
Query: 181 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGAL-S 239
+ L I + + + + V+ + + + + +F H+ + +AF + TG L S
Sbjct: 67 MPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS 126
Query: 240 KI---IDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAY 296
+I ++ + + L +V I ++ S++ L++ V +
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMF-YYSWQ-------LSIILVVLAPIV 178
Query: 297 TLSITQWRTQFRVNMNKAENEAGN---KAIDSLINYETVKYFNNEKFEADRYEGVLKKYE 353
+++I +FR +N G A L ++ V F ++ E R++ V K
Sbjct: 179 SIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMR 238
Query: 354 QAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHG 413
+K +S S + I S A+ + A+
Sbjct: 239 LQGMK-----------------MVSASSISDPIIQL----IASLALAFVLYAASFPSVMD 277
Query: 414 NLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPL 473
+LT G + +V + L PL L +V + ++ QT+F ++ E +
Sbjct: 278 SLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDR 337
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
+EFR+V F+Y + N+N IPAGK+VA+VG SGSGKSTI L+ RF
Sbjct: 338 A----TGDLEFRNVTFTYPGREVP-ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392
Query: 534 FEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD-KSKSYEETIE 592
++ + G I +DG ++ + L SLR +A+V Q+ LF+DT+ NI Y + S E+ E
Sbjct: 393 YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 452
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
AA++A + I K N +T +GE G+ LSGG++QR+AIARA+L+++PIL+ DEATS+LD
Sbjct: 453 AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 653 SITENNILSSLKTASRNKTTICIAHRLSTIKH 684
+ +E I ++L +N+T++ IAHRLSTI+
Sbjct: 513 TESERAIQAALDELQKNRTSLVIAHRLSTIEQ 544
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 377 bits (970), Expect = e-121
Identities = 147/512 (28%), Positives = 242/512 (47%), Gaps = 42/512 (8%)
Query: 181 IILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDLAFHLNRQTGAL-S 239
+ + + V+ + ++ + +F H ++ + F TG L S
Sbjct: 67 LPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLS 126
Query: 240 KI---IDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTAY 296
+I ++ + + L ++V I L L+ S++ L++ + +
Sbjct: 127 RITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN-SWQ-------LSLVLIVVAPVV 178
Query: 297 TLSITQWRTQFRVNMNKAENEAGN---KAIDSLINYETVKYFNNEKFEADRYEGVLKKYE 353
+I+ +FR + G+ A L ++ V + ++ E R++ V
Sbjct: 179 AFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMR 238
Query: 354 QAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLSMIFAAREIAHG 413
Q +K S + + I S A+ + A+ +
Sbjct: 239 QQTMK-----------------LVSAQSIADPVIQM----IASLALFAVLFLASVDSIRA 277
Query: 414 NLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPL 473
LT G +V +F L PL L SV E ++ QT+F LM E N
Sbjct: 278 ELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAER 337
Query: 474 VLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRF 533
V N ++ +DV F+Y K S+++F+IP GK+VA+VG SGSGKSTI L RF
Sbjct: 338 V----NGEVDVKDVTFTY-QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 534 FEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK-SYEETIE 592
++ ++G+I +DG ++ D L +LRRH A+V Q+ LF+DTI NI Y + + + E+ +
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQ 452
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
AA+ A I P +T +GE G LSGG++QRVAIARA+L++ P+L+ DEATS+LD
Sbjct: 453 AARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 653 SITENNILSSLKTASRNKTTICIAHRLSTIKH 684
+ +E I ++L +NKT + IAHRLSTI+
Sbjct: 513 TESERAIQAALDELQKNKTVLVIAHRLSTIEQ 544
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 361 bits (930), Expect = e-115
Identities = 146/529 (27%), Positives = 246/529 (46%), Gaps = 44/529 (8%)
Query: 168 TNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHNLDL 227
TN T + T + LG +C + N +R + + QR + ++ ++F + ++
Sbjct: 51 TNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEV 110
Query: 228 AFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTI--FELALISSILSYKCGSEFSLL 285
AF +TG L I+R S + ++ N+ + A + + + +
Sbjct: 111 AFFDKTRTGEL---INRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATF 167
Query: 286 AVSCV-------GIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNE 338
+S V IY Y +T+ TQ + +A A + + N TV+ F E
Sbjct: 168 VLSVVPPVSIIAVIYGRYLRKLTK-VTQ------DSLAQATQLAEERIGNVRTVRAFGKE 220
Query: 339 KFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTA 398
E ++Y + Q A K A + +
Sbjct: 221 MTEIEKYASKVDHVMQLARK-----------------EAFARAGFFGATGL----SGNLI 259
Query: 399 MTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLM 458
+ + + ++TVG+L F + + +G L S Y E+ + ++ L+
Sbjct: 260 VLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELL 319
Query: 459 LKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGG 518
+EP + + + ++EF++V+F+Y + IF + + +IP+G A+VG
Sbjct: 320 EREPKLPFNEGVILN-EKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 378
Query: 519 SGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNI 578
SGSGKST++ LL R ++P +G I +DG +I ++ LR I V Q+P+LF +I NI
Sbjct: 379 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 438
Query: 579 NYG---DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635
YG S + EE A++A+ I +P + T VGE+G+ LSGG+KQR+AIARA+
Sbjct: 439 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498
Query: 636 LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
LKN IL+ DEATS+LD+ E + +L +T + IAHRLSTIK+
Sbjct: 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN 547
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 348 bits (894), Expect = e-114
Identities = 105/221 (47%), Positives = 146/221 (66%), Gaps = 3/221 (1%)
Query: 464 IKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGK 523
+++ + +IEF DVNFSY + R ++NF IP+G + A+VG +GSGK
Sbjct: 2 LESFSLTSHE--KKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGK 59
Query: 524 STIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDK 583
STI +LLYRF++ G I I GKN+N + +S+R I IVPQD +LF++TI YNI YG
Sbjct: 60 STIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL 118
Query: 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILV 643
+ EE I+A K A L++ I P ++T VG +G+KLSGGE+QR+AIAR +LK+ I++
Sbjct: 119 DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178
Query: 644 FDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
FDEATSSLDS TE +++ +N+T I IAHRLSTI
Sbjct: 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS 219
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 375 bits (965), Expect = e-114
Identities = 133/530 (25%), Positives = 250/530 (47%), Gaps = 23/530 (4%)
Query: 155 NTGIVSDGALLELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKI 214
+ ++ + + L T+ Y ++ + + A R I KI
Sbjct: 84 VSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKI 143
Query: 215 AKNVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSIL 274
+ F + N ++ + G L+ + IN + + + I+
Sbjct: 144 RQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMA-TFFGGFII 202
Query: 275 SYKCGSEFSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKY 334
+ G + +L+ ++ + + + F A +AG A + L TV
Sbjct: 203 GFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIA 262
Query: 335 FNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAI 394
F +K E +RY L++ ++ +K A+ + S+ I
Sbjct: 263 FGGQKKELERYNNNLEEAKRLGIK-----------------KAITANISMGAAFL---LI 302
Query: 395 FSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTM 454
++ + L+ + + ++G ++ V + + +G A +
Sbjct: 303 YA-SYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEV 361
Query: 455 FTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVA 514
F ++ +P+I + + + ++EF++++FSY + +I LN + +G++VA
Sbjct: 362 FKIIDNKPSIDSFSKS-GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVA 420
Query: 515 IVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTI 574
+VG SG GKST ++L+ R ++P G + IDG++I +++ LR I +V Q+PVLF TI
Sbjct: 421 LVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTI 480
Query: 575 LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634
NI YG + + +E +A K A+ ++ I+K P+ ++T VGERG +LSGG+KQR+AIARA
Sbjct: 481 AENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540
Query: 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
+++N IL+ DEATS+LD+ +E + ++L A +TTI IAHRLST+++
Sbjct: 541 LVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590
Score = 364 bits (937), Expect = e-110
Identities = 140/524 (26%), Positives = 254/524 (48%), Gaps = 27/524 (5%)
Query: 165 LELTNATDALIASATSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLHN 224
+ ++ L + I I S L+ F + +++ VF +
Sbjct: 735 FTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLR 794
Query: 225 LDLAFHL--NRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSEF 282
D+++ TGAL+ + + + + + I I L I+S G +
Sbjct: 795 QDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANL-GTGIIISLIYGWQL 853
Query: 283 SLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETVKYFNNEKFEA 342
+LL ++ V I + + + + K +G A +++ N+ TV E+
Sbjct: 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFE 913
Query: 343 DRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATLNFGQSAIFSTAMTLS 402
Y L+ + A+K A + + F Q+ ++ + +
Sbjct: 914 TMYAQSLQIPYRNAMK-----------------KAHVFGITFS---FTQAMMYF-SYAAA 952
Query: 403 MIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEP 462
F A + +T ++++V + +M +G + S + +A + + ++ K P
Sbjct: 953 FRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012
Query: 463 TIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSG 522
I + + L +++F V F+Y + + + L+ + G+++A+VG SG G
Sbjct: 1013 EIDSYSTQ-GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCG 1071
Query: 523 KSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGD 582
KST+++LL RF++P AG++++DGK I +++ LR + IV Q+P+LF +I NI YGD
Sbjct: 1072 KSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131
Query: 583 KSK--SYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
S+ SYEE + AAK A++H I P+ Y T+VG++G +LSGG+KQR+AIARA+++
Sbjct: 1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH 1191
Query: 641 ILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
IL+ DEATS+LD+ +E + +L A +T I IAHRLSTI++
Sbjct: 1192 ILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN 1235
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 322 bits (827), Expect = e-105
Identities = 84/204 (41%), Positives = 127/204 (62%), Gaps = 3/204 (1%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+ R V+F+Y D ++I +++F +A G SG GKSTI LL RF++P AG I
Sbjct: 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSK-SYEETIEAAKLADLH 600
IDG+ I+++ L++ R I V QD + TI N+ YG + + E+ + LA
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 601 NSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNIL 660
+ + P+ T+VGERG+K+SGG++QR+AIARA L+N IL+ DEAT+SLDS +E+ +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 661 SSLKTASRNKTTICIAHRLSTIKH 684
+L + + +TT+ IAHRLSTI
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVD 203
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 319 bits (821), Expect = e-104
Identities = 90/203 (44%), Positives = 132/203 (65%), Gaps = 1/203 (0%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I FR++ F Y + I N+N +I G+ + IVG SGSGKST+ +L+ RF+ P G +
Sbjct: 8 ITFRNIRFRY-KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHN 601
IDG ++ D + LRR + +V QD VL + +I+ NI+ + S E+ I AAKLA H+
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILS 661
I + Y T VGE+G LSGG++QR+AIARA++ N IL+FDEATS+LD +E+ I+
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 662 SLKTASRNKTTICIAHRLSTIKH 684
++ + +T I IAHRLST+K+
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKN 209
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 290 bits (744), Expect = 2e-92
Identities = 72/215 (33%), Positives = 121/215 (56%), Gaps = 3/215 (1%)
Query: 473 LVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR 532
L ++F+DV+F+Y + ++ L FT+ GK A+VG +GSGKST+ LL
Sbjct: 8 LAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN 67
Query: 533 FFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG-DKSKSYEETI 591
++P G + +DG+ + D L +A V Q+P+LF + NI YG ++ + EE
Sbjct: 68 LYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEIT 127
Query: 592 EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
A + H+ I +P Y+T+VGE G +LSGG++Q VA+ARA+++ +L+ D ATS+L
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 652 DSITENNILSSLKTASR--NKTTICIAHRLSTIKH 684
D+ + + L + ++T + I +LS +
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER 222
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 301 bits (772), Expect = 3e-92
Identities = 140/537 (26%), Positives = 238/537 (44%), Gaps = 64/537 (11%)
Query: 169 NATDALIASA-----TSIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLH 223
D + +L G +S L+ + +++Q + ++ K +F L
Sbjct: 62 KTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQ 121
Query: 224 NLDLAFHLNRQTG-ALSKI---IDRGSRGINFVLSAM---VFNIVPTIFELALISSILSY 276
+ + F G +S++ +D + + + + + + + ++ ILS
Sbjct: 122 RVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILS- 180
Query: 277 KCGSEFSLLAVSCVGIYTAYTLSIT---------QWRTQFRVNMNKAENEAGNKAIDSLI 327
L+ +S V + T ++ R ++N E+ +G
Sbjct: 181 -------LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLT------ 227
Query: 328 NYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLATL 387
+K F E+ E ++++ V + + K AQ L ++
Sbjct: 228 ---VIKLFTREEKEMEKFDRVNESLRKVGTK------------AQIFSGVLPPLMNMVN- 271
Query: 388 NFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQA 447
N G + I F +TVG + G Q + PL L + + ++ A
Sbjct: 272 NLGFALIS--------GFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMA 323
Query: 448 FIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTI 507
+ +F + L K+ +A+ L IEF++V FSY K + ++ F I
Sbjct: 324 LASAERIFEI-LDLEEEKDDPDAVEL--REVRGEIEFKNVWFSYDKKKP--VLKDITFHI 378
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP 567
G+ VA+VG +GSGK+TI+ LL RF++ + G I +DG +I + SLR I IV QD
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438
Query: 568 VLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627
+LF T+ N+ YG+ + EE EAAKL + I P YET + + G LS G++Q
Sbjct: 439 ILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ 498
Query: 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
+AI RA L N IL+ DEATS++D+ TE +I +++ KT+I IAHRL+TIK+
Sbjct: 499 LLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN 555
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 270 bits (694), Expect = 4e-81
Identities = 130/539 (24%), Positives = 233/539 (43%), Gaps = 69/539 (12%)
Query: 158 IVSDGALLELTNATDALIASATSIILGYGIARICSSGF-NELRNAVFASVAQRSIRKIAK 216
++ G L+ + ALI + I + S F +LR +F V SI + +
Sbjct: 62 VLKTGILMLIV----ALIGAVGGIGCTVFASYA-SQNFGADLRRDLFRKVLSFSISNVNR 116
Query: 217 NVFLHLHNLDLAFHLNRQTGALSKIIDRGSRGINFV--LSAMVFNIVPTIFELALISSIL 274
F T +L I R + + + L M+ IV L + ++
Sbjct: 117 ------------F----HTSSL---ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVM 157
Query: 275 SYKCGSEFSLL-----AVSCVGIYTAYTLSITQWRTQF----RVNMNKAENEAGNKAIDS 325
+ + S + + +R VN EN G + +
Sbjct: 158 AVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVV-- 215
Query: 326 LINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYEQAALKTSTSLA 385
+ F E++E + + + ++ + + + L
Sbjct: 216 -------RAFRREEYENENFRKANESLRRSIISAFSLIVFAL---------------PLF 253
Query: 386 TLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVR 445
I + M + F + + + +G ++ L Q+ L +G++ +
Sbjct: 254 IF------IVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIV 307
Query: 446 QAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNF 505
+A + + ++ ++P I+ N L L S+ F +V F Y ++T + S +NF
Sbjct: 308 RASASAKRVLEVLNEKPAIEEADN--ALALPNVEGSVSFENVEFRY-FENTDPVLSGVNF 364
Query: 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQ 565
++ G VA++G +GSGKST++ L+ R +P G + +D ++ V L LR HI+ VPQ
Sbjct: 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQ 424
Query: 566 DPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGE 625
+ VLF TI N+ +G + + +E +EAAK+A +H+ II P Y+++V G SGG+
Sbjct: 425 ETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484
Query: 626 KQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKH 684
KQR++IARA++K +L+ D+ TSS+D ITE IL LK ++ TT I ++ T
Sbjct: 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL 543
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 205 bits (524), Expect = 3e-59
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 7/207 (3%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
S + +D+ Y + I N++F+I G+ V ++G +GSGKST++ R
Sbjct: 16 SGGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 538 AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSY--EETIEAAK 595
G I IDG + + + L+ R+ ++PQ +F T N+ D + ++ +E + A
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVAD 130
Query: 596 LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSIT 655
L + I ++P + + + G LS G KQ + +AR++L IL+ DE ++ LD +T
Sbjct: 131 EVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190
Query: 656 ENNILSSLKTASRNKTTICIAHRLSTI 682
I +LK A + T I R+ +
Sbjct: 191 YQIIRRTLKQAFADCTVILCEARIEAM 217
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 135 bits (341), Expect = 1e-35
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 24/201 (11%)
Query: 482 IEFRDVNFSYIDKHTKR-IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
I+ ++V + K +R N+N + G+ V I+G +GSGK+T++R + P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLF--HDTILYNINYGDKSK--SYEETIEAAKL 596
I+I+G + +R +I P + T+ + ++ K + +E K
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 597 ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITE 656
L I+ + LS G+ V + A+ I+ DE ++D+
Sbjct: 115 LKLGEEIL---RRKLYK-------LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 657 NNILSSLKTASRNKTTICIAH 677
+ I +K K I + H
Sbjct: 165 HVISRYIK--EYGKEGILVTH 183
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 133 bits (337), Expect = 2e-35
Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 32/218 (14%)
Query: 476 TTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535
+ + + +V + ++ + ++NF I G+ +A+ G +G+GK++++ ++ E
Sbjct: 1 SLTTTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59
Query: 536 PNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG---DKSKSYEETIE 592
P+ G I G+ I+ Q + TI NI +G D+ + Y I+
Sbjct: 60 PSEGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYR-YRSVIK 105
Query: 593 AAKL-ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSL 651
A +L D+ + +GE G+ LSGG++ R+++ARA+ K+ + + D L
Sbjct: 106 ACQLEEDISK----FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 161
Query: 652 DS-----ITENNILSSLKTASRNKTTICIAHRLSTIKH 684
D I E+ + + NKT I + ++ +K
Sbjct: 162 DVLTEKEIFESCVCKLMA----NKTRILVTSKMEHLKK 195
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 134 bits (339), Expect = 2e-35
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 26/211 (12%)
Query: 481 SIEFRDVNFSYIDK--HTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
IE +V+ + K+ N++ I G+ + + G +GSGKST+++++ EP +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 539 GAIYIDGKNINDVDLDSLRRHIAIVPQDPV--LFHDTILYNI-----NYGDKSKSYEETI 591
G + DG+ + +RR+I I Q P F + + + N+
Sbjct: 62 GDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 592 EAAKLADLHNSII--KWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
+A + L + P LSGGEK+RVAIA I+ IL+ DE
Sbjct: 119 KAMEFVGLDFDSFKDRVPFF-----------LSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 650 SLDSITENNILSSLKT-ASRNKTTICIAHRL 679
LD + ++L ++ + KT I I+H +
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 131 bits (333), Expect = 8e-35
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 30/213 (14%)
Query: 481 SIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA 540
SI R+ F++ + + + F+IP G VA+VG G GKS+++ L + G
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 541 IYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNINYG---DKSKSYEETIEAAKL- 596
+ I G +A VPQ + +D++ NI +G ++ Y I+A L
Sbjct: 62 VAIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPY-YRSVIQACALL 107
Query: 597 ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS--- 653
DL P+ T++GE+G+ LSGG+KQRV++ARA+ N I +FD+ S++D+
Sbjct: 108 PDLEI----LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163
Query: 654 --ITENNILSSLKTASRNKTTICIAHRLSTIKH 684
I EN I K +NKT I + H +S +
Sbjct: 164 KHIFENVIGP--KGMLKNKTRILVTHSMSYLPQ 194
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 132 bits (334), Expect = 2e-34
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 25/212 (11%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
+ ++ ++N++Y D +N I G+ AI+GG+G GKST+ + +P+
Sbjct: 4 EDYILKVEELNYNYSDGT--HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 538 AGAIYIDGKNIND--VDLDSLRRHIAIVPQDPV--LFHDTILYNINYG------DKSKSY 587
+G I D K I+ + LR I IV QDP LF ++ ++++G + +
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR 121
Query: 588 EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEA 647
+ A K + + K + LS G+K+RVAIA ++ +L+ DE
Sbjct: 122 KRVDNALKRTGIEHLKDKPTHC-----------LSFGQKKRVAIAGVLVMEPKVLILDEP 170
Query: 648 TSSLDSITENNILSSLKT--ASRNKTTICIAH 677
T+ LD + + I+ L T I H
Sbjct: 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 127 bits (321), Expect = 9e-33
Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 38/238 (15%)
Query: 466 NKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKST 525
+ ++ LV S+ I+ + K I +++ I G + G +G+GK+T
Sbjct: 6 HHHHSSGLVPRGSHMLIQLDQIGRMK---QGKTILKKISWQIAKGDKWILYGLNGAGKTT 62
Query: 526 IIRLLYRFFEPNAGAIYIDGKNINDV--DLDSLRRHIAIVPQD---------PVL----- 569
++ +L + +G + + GK V +++R+HI V V+
Sbjct: 63 LLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS 122
Query: 570 -FHDTI-LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQ 627
+I +Y + + ++ ++ I LS GEKQ
Sbjct: 123 GAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG--------------YLSTGEKQ 168
Query: 628 RVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTT---ICIAHRLSTI 682
RV IARA++ +L+ DE + LD I ++LS L + S + T I + H + I
Sbjct: 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI 226
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 121 bits (307), Expect = 5e-31
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 30/184 (16%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
I+ + S+ + +N I G+ V ++G SGSGKST +R L + + G I
Sbjct: 25 IDVHQLKKSFGSLE---VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 542 YIDGKNIND--VDLDSLRRHIAIVPQDPVLF-HDTILYNINYGD---KSKSYEETIEAA- 594
IDG N+ +L+ +R + +V Q LF H T+L NI + E+ A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM 141
Query: 595 ------KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
L D + +P+ LSGG+ QRVAIARA+ I++FDE T
Sbjct: 142 ELLDKVGLKDKAH---AYPD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPT 187
Query: 649 SSLD 652
S+LD
Sbjct: 188 SALD 191
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 121 bits (306), Expect = 5e-31
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 47/220 (21%)
Query: 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
N ++ ++ F Y ++ +F LNF + G +A++G +G GKST++ LL P
Sbjct: 2 NKALSVENLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 539 GAIYIDGKNINDVDLDSLRRHIAIVPQDP-----------VLF----HDTILYNINYGDK 583
G I + + I VPQ VL H D
Sbjct: 60 GKI-------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106
Query: 584 SKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILV 643
+ + ++ L L + LSGG++Q + IARAI +++
Sbjct: 107 QVA-MQALDYLNLTHLAKR----------EFTS----LSGGQRQLILIARAIASECKLIL 151
Query: 644 FDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLST 681
DE TS+LD ++ +LS L ++ N T + H+ +
Sbjct: 152 LDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 128 bits (323), Expect = 6e-31
Identities = 43/231 (18%), Positives = 81/231 (35%), Gaps = 29/231 (12%)
Query: 459 LKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGG 518
+ ++ + L +AS F + + + + + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGE 386
Query: 519 SGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPV--LFHDTILY 576
+G+GK+T+I+LL +P+ G + + IA V LF I
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQDIPKLN------VSMKPQKIAPKFPGTVRQLFFKKI-- 438
Query: 577 NINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAIL 636
+ + ++ ++ D+ + +V LSGGE QRVAI A+
Sbjct: 439 -RGQFLNPQFQTDVVKPLRIDDI----------IDQEVQH----LSGGELQRVAIVLALG 483
Query: 637 KNTPILVFDEATSSLDSITENNILSSLK--TASRNKTTICIAHRLSTIKHL 685
I + DE ++ LDS ++ KT + H +L
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534
Score = 114 bits (287), Expect = 2e-26
Identities = 49/225 (21%), Positives = 84/225 (37%), Gaps = 36/225 (16%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
V Y K + T G+ + +VG +G GKST +++L +PN G
Sbjct: 78 NLEAHVTHRYSANSFKL---HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 542 -----------YIDGKNINDVDLDSLRRHIAIVPQDPVLFHD---------TILYNINYG 581
Y G + + L I + + + + + +
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 582 DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641
+ KS E+ K+ L N + + LSGGE QR AI + ++ +
Sbjct: 195 ME-KSPEDVKRYIKILQLENVLKRDIEK-----------LSGGELQRFAIGMSCVQEADV 242
Query: 642 LVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIKHL 685
+FDE +S LD N +++ + K IC+ H LS + +L
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYL 287
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 119 bits (301), Expect = 4e-30
Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 29/230 (12%)
Query: 460 KEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGS 519
E K K N + + S+ F + + + ++NF I G+ +A+ G +
Sbjct: 19 GELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGST 73
Query: 520 GSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNI- 578
G+GK++++ ++ EP+ G I G+ I+ Q+ + TI NI
Sbjct: 74 GAGKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENII 120
Query: 579 --NYGDKSKSYEETIEAAKL-ADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAI 635
+Y D+ + Y I+A +L D+ + +GE G+ LSGG++ R+++ARA+
Sbjct: 121 GVSY-DEYR-YRSVIKACQLEEDISK----FAEKDNIVLGEGGITLSGGQRARISLARAV 174
Query: 636 LKNTPILVFDEATSSLDSITENNILSS-LKTASRNKTTICIAHRLSTIKH 684
K+ + + D LD +TE I S + NKT I + ++ +K
Sbjct: 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 119 bits (300), Expect = 3e-29
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 30/244 (12%)
Query: 458 MLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTK-RIFSNLNFTIPAGKSVAIV 516
M + ++ + I+ ++ + + +N++ +PAG+ ++
Sbjct: 1 MGHHHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVI 60
Query: 517 GGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI---NDVDLDSLRRHIAIVPQDPVLFHD- 572
G SG+GKST+IR + P G++ +DG+ + ++ +L RR I ++ Q L
Sbjct: 61 GASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120
Query: 573 TILYNINY---------GDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSG 623
T+ N+ + + E + L D H+S Y + LSG
Sbjct: 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-------YPSN-------LSG 166
Query: 624 GEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASR--NKTTICIAHRLST 681
G+KQRVAIARA+ N +L+ D+ATS+LD T +IL LK +R T + I H +
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 226
Query: 682 IKHL 685
+K +
Sbjct: 227 VKRI 230
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 114 bits (288), Expect = 4e-29
Identities = 44/209 (21%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 478 SNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
+ +E RD++ Y K + + TI G V G +G GK+T+++ + + +P
Sbjct: 7 HGSKLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62
Query: 538 AGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD-TILYNIN-----YG-DKSKSY-EE 589
G I +G I V + I +P++ ++ ++ + YG +K+ +
Sbjct: 63 KGEIIYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD 117
Query: 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
+E+ ++ DL + + LS G +RV +A +L N I V D+
Sbjct: 118 ALESVEVLDLKKKLGE---------------LSQGTIRRVQLASTLLVNAEIYVLDDPVV 162
Query: 650 SLDSITENNILSSLKTASRNK-TTICIAH 677
++D +++ +L S+ + K I +
Sbjct: 163 AIDEDSKHKVLKSILEILKEKGIVIISSR 191
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 121 bits (306), Expect = 4e-29
Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 23/229 (10%)
Query: 459 LKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGG 518
++ IK + + + + + + K N G+ + I+G
Sbjct: 245 IRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIK--KLGDFQLVVDNGEAKEGEIIGILGP 302
Query: 519 SGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHDTILYNI 578
+G GK+T R+L + G++ + + + + + L N
Sbjct: 303 NGIGKTTFARILVGEITADEGSVTPEKQIL--------SYKPQRIFPNYDGTVQQYLENA 354
Query: 579 NYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKN 638
+ S S E K +LH + N LSGGE Q++ IA + K
Sbjct: 355 SKDALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKE 403
Query: 639 TPILVFDEATSSLDSITENNILSSLK--TASRNKTTICIAHRLSTIKHL 685
+ V D+ +S LD + ++K T R T I H LS ++
Sbjct: 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI 452
Score = 106 bits (267), Expect = 4e-24
Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 24/213 (11%)
Query: 485 RDVNFSYIDKHTKRIFSNLNFTIP-AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI 543
+V Y F P + ++G +G GK+T++++L PN G
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-- 56
Query: 544 DGKNINDVDLDSLRRH-IAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAK--LADLH 600
+ K D L R I ++ + + + K + E + K + ++
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKEL--YSN----ELKIVHKIQYVEYASKFLKGTVNEIL 110
Query: 601 NSIIKWPNHYET--QVGERGL------KLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
I + E + L LSGG QR+ +A ++L+ + +FD+ +S LD
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Query: 653 SITENNILSSLKTASRNKTTICIAHRLSTIKHL 685
N+ +++ +NK I + H L + +L
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHDLIVLDYL 203
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 120 bits (304), Expect = 1e-28
Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 27/196 (13%)
Query: 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDL 553
+ I G+ + IVG +G GK+T +++L EP G + D
Sbjct: 366 DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK--- 422
Query: 554 DSLRRHIAIVPQDPV--LFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
++I + V L +N + E ++ + DL Y+
Sbjct: 423 ---PQYIKAEYEGTVYELLSKIDSSKLN---SNFYKTELLKPLGIIDL----------YD 466
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRN 669
V + LSGGE QRVAIA +L++ I + DE ++ LD + +++
Sbjct: 467 RNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522
Query: 670 KTTICIAHRLSTIKHL 685
KT + + H + I ++
Sbjct: 523 KTALVVEHDVLMIDYV 538
Score = 113 bits (284), Expect = 4e-26
Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 34/224 (15%)
Query: 479 NASIEF-RDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
N + D Y + G V IVG +G+GK+T +++L PN
Sbjct: 88 NLPEQLDEDCVHRY---GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN 144
Query: 538 AGAI---------YIDGKNINDVDLDSLRRHIAIVPQ------DPVLFHDTILYNINYGD 582
G + + I V + P + + D
Sbjct: 145 LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD 204
Query: 583 KSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPIL 642
+ +EE ++ +L ++ + + +LSGGE QRVAIA A+L+
Sbjct: 205 EVGKFEEVVKELELENVLDRELH--------------QLSGGELQRVAIAAALLRKAHFY 250
Query: 643 VFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIKHL 685
FDE +S LD + ++ A+ K + + H L+ + +L
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYL 294
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 114 bits (288), Expect = 1e-28
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 40/200 (20%)
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
S + D++ Y + ++ AG ++I+G SGSGKST +R + +P
Sbjct: 2 MSENKLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP 58
Query: 537 NAGAIYIDGKNI-------------NDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGD 582
+ GAI ++G+NI + L LR + +V Q L+ H T+L N+
Sbjct: 59 SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP 118
Query: 583 ---KSKSYEETIEAAK-------LADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIA 632
S + E A + + + Y LSGG++QRV+IA
Sbjct: 119 IQVLGLSKHDARERALKYLAKVGIDE------RAQGKYPVH-------LSGGQQQRVSIA 165
Query: 633 RAILKNTPILVFDEATSSLD 652
RA+ +L+FDE TS+LD
Sbjct: 166 RALAMEPDVLLFDEPTSALD 185
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 119 bits (300), Expect = 3e-28
Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 31/248 (12%)
Query: 442 REVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFS 501
R F+ + P V + + + Y
Sbjct: 248 RNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDY----GSFRLE 303
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
I G+ + IVG +G GK+T +++L EP G I D ++I
Sbjct: 304 VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYK------PQYIK 357
Query: 562 IVPQDPV--LFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGL 619
+ V L K S E K + + + N
Sbjct: 358 ADYEGTVYELLSKID------ASKLNSNFYKTELLKPLGIIDLYDREVNE---------- 401
Query: 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLK--TASRNKTTICIAH 677
LSGGE QRVAIA +L++ I + DE ++ LD + +++ KT + + H
Sbjct: 402 -LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 460
Query: 678 RLSTIKHL 685
+ I ++
Sbjct: 461 DVLMIDYV 468
Score = 111 bits (280), Expect = 7e-26
Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 33/216 (15%)
Query: 486 DVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGA----- 540
D Y + G V IVG +G+GKST +++L PN
Sbjct: 26 DCVHRY---GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 541 ----IYIDGKNINDVDLDSLRRHIAIVPQ------DPVLFHDTILYNINYGDKSKSYEET 590
G + + I V + P ++ + D++ EE
Sbjct: 83 DGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEV 142
Query: 591 IEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSS 650
++A +L ++ I+ LSGGE QRVAIA A+L+N FDE +S
Sbjct: 143 VKALELENVLEREIQ--------------HLSGGELQRVAIAAALLRNATFYFFDEPSSY 188
Query: 651 LDSITENNILSSLKT-ASRNKTTICIAHRLSTIKHL 685
LD N +++ + K+ + + H L+ + +L
Sbjct: 189 LDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYL 224
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 112 bits (283), Expect = 4e-27
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 22/184 (11%)
Query: 476 TTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535
+ +IEF V Y ++F I G+ V ++G SGSGK+TI+RL+
Sbjct: 9 HHGSMTIEFVGVEKIYPGGAR--SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66
Query: 536 PNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG------DKSKSYE 588
P G ++I GK + D+ +R++ +V Q+ LF H T+ N+++G K +
Sbjct: 67 PTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 589 ETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEAT 648
E + L + + N + + LSGG++QRVA+ARA+ +L+FDE
Sbjct: 125 RVRELLRFMRLES----YANRFPHE-------LSGGQQQRVALARALAPRPQVLLFDEPF 173
Query: 649 SSLD 652
+++D
Sbjct: 174 AAID 177
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 108 bits (272), Expect = 1e-26
Identities = 70/219 (31%), Positives = 103/219 (47%), Gaps = 39/219 (17%)
Query: 482 IEFRDVNFSY-IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKST---IIRLLYRFFEPN 537
++ ++V +Y + + N+N I G+ V+I+G SGSGKST II L + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 538 AGAIYIDGKNINDVDLDSL----RRHIAIVPQDPVLFH----DTIL--------YNINYG 581
G +YID ND+D D L R I V Q F+ T L +
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---FNLIPLLTALENVELPLIFKYRGA 115
Query: 582 -DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTP 640
+ + +E K+A+L ++ NH Q LSGG++QRVAIARA+ N P
Sbjct: 116 MSGEERRKRALECLKMAELEE---RFANHKPNQ-------LSGGQQQRVAIARALANNPP 165
Query: 641 ILVFDEATSSLDSITENNILSSLKT--ASRNKTTICIAH 677
I++ D+ T +LDS T I+ LK KT + + H
Sbjct: 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 108 bits (273), Expect = 1e-26
Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 25/182 (13%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
++F I G+ ++G +G+GK+T +R++ +P++G + + GKN+ + + +R+ I+
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91
Query: 562 IVPQDPVLFHD----------TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
+P++ + + Y + + + E E A L + +
Sbjct: 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS------ 145
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNKT 671
S G +++ IARA++ N + + DE TS LD + + LK AS+
Sbjct: 146 --------TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197
Query: 672 TI 673
TI
Sbjct: 198 TI 199
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 108 bits (273), Expect = 7e-26
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 21/175 (12%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
IE ++ + + NL+ + +G+ I+G +G+GK+ + L+ F P++G I
Sbjct: 2 IEIESLSRKWKNFSLD----NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 542 YIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYG---DKSKSYEETIEAAKLA 597
+DGK++ DL + IA V Q+ LF H + N+ +G K K + ++ A+
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 598 DLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
+ + + + P LSGGE+QRVA+ARA++ N IL+ DE S+LD
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 104 bits (261), Expect = 2e-25
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 43/214 (20%)
Query: 482 IEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKST---IIRLLYRFFEPNA 538
+ ++ I ++ ++ G+ V+I+G SGSGKST I+ LL P
Sbjct: 5 LRAENIKKVI---RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 539 GAIYIDGKNINDVDLDSL----RRHIAIVPQDPVLFH----DTILYNIN----YGDKSKS 586
G ++++GK ++ + L R + V Q + T L N+ K K
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF---HYLIPELTALENVIVPMLKMGKPKK 115
Query: 587 Y-----EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPI 641
E + L D + + LSGGE+QRVAIARA+ +
Sbjct: 116 EAKERGEYLLSELGLGD-------KLSRKPYE-------LSGGEQQRVAIARALANEPIL 161
Query: 642 LVFDEATSSLDSITENNILSSLKTASRNKTTICI 675
L DE T +LDS ++ + T+I +
Sbjct: 162 LFADEPTGNLDSANTKRVMDIFLKINEGGTSIVM 195
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 104 bits (261), Expect = 4e-25
Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 30/195 (15%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL 556
L+ + AG+ + +VG +G+GKST++ + G+I G+ + L
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKL 71
Query: 557 RRHIAIVPQDPVL-F----HDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
H A + Q F + + + +++ + A L D
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK------------ 119
Query: 612 TQVGERGL-KLSGGEKQRVAIARAILKNTP-------ILVFDEATSSLDSITENNILSSL 663
R +LSGGE QRV +A +L+ TP +L+ DE +SLD ++ + L
Sbjct: 120 ---LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176
Query: 664 KT-ASRNKTTICIAH 677
+ + + +H
Sbjct: 177 SALSQQGLAIVMSSH 191
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 106 bits (266), Expect = 6e-25
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
I ++V+ + + N+N I G+ I+G SG+GK+T +R++ P+ G
Sbjct: 2 VRIIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
Query: 540 AIYIDGKNINDVDLDSL---RRHIAIVPQDPVLF-HDTILYNINYG------DKSKSYEE 589
+Y D + + + R I +V Q L+ + T NI + K + +
Sbjct: 61 ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 590 TIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
E AK+ D+H+ + +P +LSG ++QRVA+ARA++K+ +L+ DE S
Sbjct: 121 VEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFS 169
Query: 650 SLD 652
+LD
Sbjct: 170 NLD 172
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 102 bits (256), Expect = 1e-24
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 19/157 (12%)
Query: 502 NLNFTIPAGKS-VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHI 560
LN G+ ++G +G+GKS + L+ +P+ G + ++G +I L RR I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGI 72
Query: 561 AIVPQDPVLF-HDTILYNINYG----DKSKSYEETIEAAKLADLHNSIIKWPNHYETQVG 615
VPQD LF H ++ NI YG ++ + E A+ + + + + P
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA------- 125
Query: 616 ERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
+LSGGE+QRVA+ARA++ +L+ DE S++D
Sbjct: 126 ----RLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 101 bits (254), Expect = 3e-23
Identities = 50/186 (26%), Positives = 94/186 (50%), Gaps = 29/186 (15%)
Query: 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
A++ ++ S+ + ++++ ++ G+ + I+G SG GK+T++R L F +P++
Sbjct: 2 TAALHIGHLSKSF---QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS 58
Query: 539 GAIYIDGKNIND--VDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDKSKSY-------- 587
G I + GK I +L R + + Q+ VLF H T+ NI YG +
Sbjct: 59 GEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR 118
Query: 588 -EETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDE 646
E +E +++L ++P+ LSGG++QR A+ARA+ + +++ DE
Sbjct: 119 IEAMLELTGISELAG---RYPHE-----------LSGGQQQRAALARALAPDPELILLDE 164
Query: 647 ATSSLD 652
S+LD
Sbjct: 165 PFSALD 170
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 95.0 bits (237), Expect = 5e-21
Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 29/183 (15%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
I+ ++ + + +N+N I G+ +A++G SGSGKST++ + ++P +G
Sbjct: 2 VEIKLENIVKKFGNFT---ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG 58
Query: 540 AIYIDGKNINDV---DLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-SKSYEETI--- 591
IY D K++ ++ D R++ +V Q+ L+ H T+ NI + + K+ E I
Sbjct: 59 KIYFDEKDVTELPPKD-----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK 113
Query: 592 --EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
E AK+ + + ++P LSGG++QRVAIARA++K +L+ DE S
Sbjct: 114 VREVAKMLHIDKLLNRYPWQ-----------LSGGQQQRVAIARALVKEPEVLLLDEPLS 162
Query: 650 SLD 652
+LD
Sbjct: 163 NLD 165
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 91.5 bits (228), Expect = 6e-20
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 25/181 (13%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
SI ++ + ++F + G+ VA++G SG GK+T + +L ++P +G
Sbjct: 2 PSIRVVNLKKYFGKVK---AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG 58
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-SKSYEETI-----E 592
IY D +ND+ R + +V Q+ L+ H T+ NI + + + ++ + E
Sbjct: 59 EIYFDDVLVNDIP--PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVE 116
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEATSSL 651
A+ + + +R LSGG++QRVA+ARA++K +L+FDE S+L
Sbjct: 117 IARKLLI------------DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNL 164
Query: 652 D 652
D
Sbjct: 165 D 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 91.1 bits (227), Expect = 9e-20
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 29/183 (15%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
++ ++ + + + LN TI G+ + ++G SG GK+T +R++ EP G
Sbjct: 10 VEVKLENLTKRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66
Query: 540 AIYIDGKNINDV---DLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-SKSYEETI--- 591
IY +++ + D R+I++V Q ++ H T+ NI + K K ++ I
Sbjct: 67 RIYFGDRDVTYLPPKD-----RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR 121
Query: 592 --EAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATS 649
AA+L + + ++P LSGG++QRVA+ARAI+ +L+ DE S
Sbjct: 122 VRWAAELLQIEELLNRYPAQ-----------LSGGQRQRVAVARAIVVEPDVLLMDEPLS 170
Query: 650 SLD 652
+LD
Sbjct: 171 NLD 173
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 90.0 bits (224), Expect = 2e-19
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 27/185 (14%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
A + DV + + ++ + G+ + ++G SG GK+T +R++ EP+ G
Sbjct: 2 AGVRLVDVWKVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58
Query: 540 AIYIDGKNINDVDLDSLR----RHIAIVPQDPVLF-HDTILYNINYGDK-SKSYEETI-- 591
IYI K + D + R IA+V Q L+ H T+ NI + K K + I
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 592 ---EAAKLADLHNSIIKWPNHYETQVGERGLK-LSGGEKQRVAIARAILKNTPILVFDEA 647
E A+L L T++ R + LSGG++QRVA+ RAI++ + + DE
Sbjct: 119 RVREVAELLGL------------TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166
Query: 648 TSSLD 652
S+LD
Sbjct: 167 LSNLD 171
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 79.9 bits (198), Expect = 4e-16
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 33/185 (17%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
AS++ ++V ++ + + ++N I G+ V VG SG GKST++R++ +G
Sbjct: 2 ASVQLQNVTKAW-GEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 540 AIYIDGKNINDVDLDSLRRHIAIVPQDPVLF-HDTILYNINYGDK-SKSYEETI-----E 592
++I K +ND R + +V Q L+ H ++ N+++G K + + +E I +
Sbjct: 59 DLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ 116
Query: 593 AAKLADLHNSIIKWPNHYETQVGERGLK-----LSGGEKQRVAIARAILKNTPILVFDEA 647
A++ L H L LSGG++QRVAI R ++ + + DE
Sbjct: 117 VAEVLQL--------AHL--------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
Query: 648 TSSLD 652
S+LD
Sbjct: 161 LSNLD 165
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 71.2 bits (174), Expect = 9e-13
Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 34/250 (13%)
Query: 432 MPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSY 491
+ + + + + L + P + + + FS
Sbjct: 384 DQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSL 443
Query: 492 IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV 551
K + + + + I G +G GKST++R + A V
Sbjct: 444 -AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI-------ANG---------QV 486
Query: 552 DLDSLRRHIAI--VPQDPVLFHD--TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWP 607
D + V D H ++L + + +E I+ KL +
Sbjct: 487 DGFPTQEECRTVYVEHDIDGTHSDTSVLDFVF--ESGVGTKEAIKD-KLIEFG----FTD 539
Query: 608 NHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667
+ LSGG K ++A+ARA+L+N IL+ DE T+ LD++ +++ L +
Sbjct: 540 EMIAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--T 593
Query: 668 RNKTTICIAH 677
T+I I+H
Sbjct: 594 CGITSITISH 603
Score = 50.4 bits (120), Expect = 2e-06
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 480 ASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAG 539
A ++ ++ F Y +K +++NF +A++G +G+GKST+I +L P +G
Sbjct: 670 AIVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 540 AIYI 543
+Y
Sbjct: 729 EVYT 732
Score = 44.3 bits (104), Expect = 2e-04
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 620 KLSGGEKQRVAIARAILKNTPILVFDEATSSLD 652
LSGG+K ++ +A + ++V DE T+ LD
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 67.5 bits (166), Expect = 1e-12
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 477 TSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
S+ +E + ++ Y ++ +P G+ V ++G +G+GK+T + +
Sbjct: 2 VSDIVLEVQSLHVYY---GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 537 NAGAIYIDGKNINDVDLDSL-RRHIAIVPQDPVLFHD-TILYNINYG----DKSKSYEET 590
G I +G++I + + R IA+VP+ +F + T+ N+ G + +
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118
Query: 591 IEAA-----KLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645
+E +L + G LSGGE+Q +AI RA++ +L+ D
Sbjct: 119 LEWIFSLFPRLKERLKQ--------------LGGTLSGGEQQMLAIGRALMSRPKLLMMD 164
Query: 646 E 646
E
Sbjct: 165 E 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 2e-12
Identities = 90/610 (14%), Positives = 166/610 (27%), Gaps = 157/610 (25%)
Query: 221 HLHNLDLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNI---VPTIFELALISSILSYK 277
H H++D F I+ FV + ++ +I I I+ K
Sbjct: 3 HHHHMD--FETGEHQYQYKDILSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 278 CGSE-----FSLLAVSCVGIYTAYTLSITQWRTQFRVNMNKAENEAGNKAIDSLINYETV 332
F L + + + + +F ++ K E + I
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 333 KYFNNEKFEAD---RYEGVLKKYEQAALK--TSTSLATLN----FGKAQYEQAALKTSTS 383
Y +N+ F R + LK + AL ++ GK +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 384 LATLNFGQSAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYRE 443
++F IF + L + + L M+ LL+Q+
Sbjct: 177 QCKMDFK---IF--WLNLKNCNSPETV---------LEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 444 VRQAFIDMQTMFTLMLKEPTIKNKANALPLVL--------------------TTSNASI- 482
++ +Q +LK K N L LVL TT +
Sbjct: 223 IKLRIHSIQAELRRLLKS---KPYENCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 483 -----------EFRDVNFSYIDKHTKRIFSN-LN---FTIP--AGK----SVAIVGGSGS 521
+ + K + L+ +P ++I+ S
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 522 -GKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRH---IAIVPQD---P--VL--- 569
G +T + + I ++N ++ R+ +++ P P +L
Sbjct: 339 DGLATWDNWKHVNCDKLTTII---ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 570 ---------------FHDTILYNINYGDKSKSY-----EETIEAAKLADLHNSII----- 604
H L + + S E ++ LH SI+
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 605 --KWPNHYETQVGERG---------LKLSGGEKQRVAIARAILKNTPILVFDEATSSLDS 653
+ + LK + +R+ + R + + F E DS
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLK-NIEHPERMTLFRMVFLD---FRFLEQKIRHDS 511
Query: 654 ITEN------NILSSLKTASRNKTTICIAH-----RLSTIKHLLGYKAHRKTSTNLVRGN 702
N N L LK K IC ++ I L K NL+
Sbjct: 512 TAWNASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFL-----PKIEENLICSK 563
Query: 703 SSAMRSMSLS 712
+ + ++L
Sbjct: 564 YTDLLRIALM 573
Score = 61.0 bits (147), Expect = 1e-09
Identities = 67/494 (13%), Positives = 133/494 (26%), Gaps = 197/494 (39%)
Query: 403 MIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFID----------MQ 452
M F E + D++ V AF+D +
Sbjct: 7 MDFETGEHQYQY---KDILSVF--------------------EDAFVDNFDCKDVQDMPK 43
Query: 453 TMFT-----LMLKEPTIKNKANALPLVLTTSNASI--EF------RDVNF---------- 489
++ + ++ + L L + + +F + F
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 490 -------SYIDKHTK-----RIFSNLNFTIP--------------AGKSVAIVGGSGSGK 523
YI++ + ++F+ N + K+V I G GSGK
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 524 STIIRLLYRFFEP---NAGAIY-IDGKNINDVD-----LDSLRRHIAIVPQDPVLFHDTI 574
+ + + ++ I+ ++ KN N + L L I DP
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-----DPNW----- 213
Query: 575 LYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARA 634
+ D S + + I + + ++K + E L
Sbjct: 214 ---TSRSDHSSNIKLRIHSIQAELRR--LLKSKPY------ENCL--------------- 247
Query: 635 ILKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIKHLLGYKAHRKT 694
LV L ++ ++ + C K LL T
Sbjct: 248 -------LV-------LLNVQNAKAWNAFNLS-------C--------KILL-------T 271
Query: 695 STNLVRGNSSAMRSMSLSRFSQVHLNRYLHTSS-----AAYVGNKQGDKP------SPS- 742
+ + + + + + + S H + L Y+ + D P +P
Sbjct: 272 TRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 743 -TLIKTQKRNCF-------HPGASTLTTTNEIETAKEEVTSQEMIKAMLTH--IWPKDEP 792
++I R+ H LTT IE++ + E + M ++P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNVLEPAEY-RKMFDRLSVFPPS-- 384
Query: 793 QIRNRVKVAMGLLV 806
+ LL
Sbjct: 385 -----AHIPTILLS 393
Score = 47.5 bits (112), Expect = 2e-05
Identities = 65/426 (15%), Positives = 120/426 (28%), Gaps = 138/426 (32%)
Query: 48 HLNRYLHTSSAAYVGNKQGDKPSPSTLIKTQKRTQSNRCLTTTQKRNC------------ 95
L + L+ + + D S L + + R L + NC
Sbjct: 201 MLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 96 ---FHPGASTLTTT------NEIETAKEEVTSQEMIKAMLTH------------IWPKDE 134
F+ L TT + + A S + LT P+D
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 135 P-QIRNRVKVAMGLL----------------YAVDELNTGIVSDGALLELTNAT------ 171
P ++ + ++ D+L T I + +L L A
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFD 376
Query: 172 -------DALIASAT-SIILGYGIARICSSGFNELRNAVFASVAQRSIRKIAKNVFLHLH 223
A I + S+I I N+L S+ ++ K + +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQ----PKESTISIP 429
Query: 224 NL--DLAFHLNRQTGALSKIIDRGSRGINFVLSAMVFNIVPTIFELALISSILSYKCGSE 281
++ +L L + I+D +N I +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDH-------------YN-------------IPKTFDSDD 463
Query: 282 FSLLAVSCVG-IYT--AYTLSI---TQWRTQFR---VNM----NK------AENEAG--- 319
+ Y+ + L + T FR ++ K A N +G
Sbjct: 464 LIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 320 NKAIDSLINYETVKYF--NNEKFEA--DRYEGVLKKYEQAALKTSTS----LATLNFGKA 371
N L Y+ Y N+ K+E + L K E+ + + + +A + +A
Sbjct: 522 NTLQQ-LKFYK--PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 372 QYEQAA 377
+E+A
Sbjct: 579 IFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 1e-10
Identities = 91/539 (16%), Positives = 170/539 (31%), Gaps = 141/539 (26%)
Query: 90 TQKRNCFHPGASTLTTTNEIETAKEEVTSQ-EMIKAMLTHIWPKDEP-QIRNRVKVAMGL 147
+Q + F L E A +E T+ E++ L ++ EP ++ +V L
Sbjct: 31 SQLQEQF---NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV---L 84
Query: 148 LYAVDELNTGIVSDG----ALLELTNATDALIASATSIILGYGIARICSS---------- 193
+ E + +L D + +I Y ARI +
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 194 -----------------G-------FNELRN--AVFASVAQRSIRKIAKNVFLHLHNLDL 227
G F ELR+ + + I+ A+ L +L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE----TL--SEL 198
Query: 228 AFHLNRQTGALSKIID-------RGSR-GINFVLSAMV-FNIVPTIFELAL-----ISSI 273
++ ++ + +++LS + P I + L + +
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---PLIGVIQLAHYVVTAKL 255
Query: 274 LSYKCGSEFSLL--AVSCV-GIYTAYTLSITQ-WRTQFRVNMNKAENEAGNKAIDSL--I 327
L + G S L A G+ TA ++ T W + F + KAI L I
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES-F--------FVSVRKAITVLFFI 306
Query: 328 NYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTS-LATLNFGKAQYEQAALKTSTSLAT 386
+ + N +L+ + + L+ N + Q + KT++ L
Sbjct: 307 GVRCYEAYPNTSLPPS----ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 387 LNFGQSAIFSTAMTLSMIFAAREIAHGNLTV-G---DLVMVNGLLFQLSMPLGFLGS--V 440
+ +S++ A+ NL V G L +N L + P G S
Sbjct: 363 ----GKQVE-----ISLVNGAK-----NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 441 YREVRQAFIDMQTMF---------TLM----------LKEPTIKNKANAL--PLVLTTSN 479
+ E R+ + F L+ L + + A + P V T +
Sbjct: 409 FSE-RKLKFSNR--FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VYDTFD 464
Query: 480 ASIEFRDVNFSYIDKHTKRIFSN-LNF--TIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535
S + R ++ S ++ I + + T + + G G G S + L +R +
Sbjct: 465 GS-DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG-GASGLGVLTHRNKD 521
Score = 52.4 bits (125), Expect = 6e-07
Identities = 73/435 (16%), Positives = 124/435 (28%), Gaps = 159/435 (36%)
Query: 410 IAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDMQTMFTLMLKEPTIKNKAN 469
++HG+L LV F+ S +E F +L EPT A+
Sbjct: 11 LSHGSLEHVLLV---------PTASFFIASQLQE----------QFNKILPEPTEGFAAD 51
Query: 470 ALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRL 529
P T+ A + + F L + S + ++ L
Sbjct: 52 DEP----TTPAELVGK---F-------------LGYV-----SSLVEPSKVGQFDQVLNL 86
Query: 530 LYRFFEPNAGAIYIDGKNIN--------DVDLDSLRRHIAIV---------------PQD 566
FE Y++G +I+ + D ++ I +
Sbjct: 87 CLTEFENC----YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 567 PVLFH-----DTILY-------NIN---------YGDKSKSYEETIE------AAKLADL 599
LF + L N + Y ++Y + A L++L
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY----QTYHVLVGDLIKFSAETLSEL 198
Query: 600 HNSIIKWPNHYETQVGERGLKLSG-GEKQRVAIARAILKNTPI---------LVFDEATS 649
+ + + +GL + E + L + PI L T+
Sbjct: 199 IRTTLDAEKVF-----TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 650 SLDSITENNILSSLKTASRNKTTI----CIAHRLS----------TIKHL--LGYKAHR- 692
L T + S LK A+ + + IA S I L +G + +
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 693 -----------KTSTNLVRGNSSAMRSMS-LSRFSQV-----HLNRYLHTSSAAYVGNKQ 735
+ S G S M S+S L++ QV N +L +
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 736 GDK------PSPSTL 744
G K P P +L
Sbjct: 373 GAKNLVVSGP-PQSL 386
Score = 45.4 bits (107), Expect = 7e-05
Identities = 51/304 (16%), Positives = 96/304 (31%), Gaps = 106/304 (34%)
Query: 406 AAREI-----AHGNLTVG----DLVMVNGLLFQLSMPLGFLGSVYREVRQAFIDM----- 451
AA+++ H T G D+V+ N + ++ + F G + +R+ + M
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPV----NLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 452 -------QTMF--------TLMLKEP--TIKNKANALPLVLTTSNASIEFRDVNFSYIDK 494
+ +F + + + P + A+ F D+ K
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA--FEDL------K 1748
Query: 495 HTKRIFSNLNFTIPAGKSV----AIVGGSGSGK-STIIRLL-YRFFEPNAGAIYIDGKNI 548
I ++ F AG S+ A+ + +++ ++ YR G +
Sbjct: 1749 SKGLIPADATF---AGHSLGEYAALASLADVMSIESLVEVVFYR------------GMTM 1793
Query: 549 ND-VDLDSLRRH----IAIVPQDPVL-FHDTILYNINYGDK-SKSYEETIEAAKLADLHN 601
V D L R IAI P F L + ++ K +E +N
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV--ERVGKRTGWLVEIVN----YN 1847
Query: 602 SIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNI-L 660
N Q ++ G+ RA+ D T+ L+ I I +
Sbjct: 1848 V----EN---QQY------VAAGDL------RAL---------DTVTNVLNFIKLQKIDI 1879
Query: 661 SSLK 664
L+
Sbjct: 1880 IELQ 1883
Score = 45.4 bits (107), Expect = 9e-05
Identities = 66/389 (16%), Positives = 112/389 (28%), Gaps = 124/389 (31%)
Query: 4 EEQQHL-VSYRQLLG--YKAHRKTSTNLVRDNSGTMRSMSLSRFSQ-VHLNRYLHTSSAA 59
EE + L +Y L+G K +T + L+R + F+Q +++ +L S
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-----FTQGLNILEWLENPSNT 225
Query: 60 YVGNKQGDKPSPSTLIK----------TQKRTQSNRCLTTTQKRNCFHPGA-----STLT 104
P L+ Q T K F PG T
Sbjct: 226 ---------PDKDYLLSIPISCPLIGVIQLA-----HYVVTAKLLGFTPGELRSYLKGAT 271
Query: 105 TTNE-------IETAKE----EVTSQEMIKAML------------THIWP---KDEPQIR 138
++ I V+ ++ I + T + P +D +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 139 NRVKVAM----GLLYA-----VDELNTGIVSDGAL-LELTNATDALIASATSIILGYGIA 188
V M L V++ N+ + + + + L N L+ S L YG+
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL-YGLN 390
Query: 189 RICSSGFNELRNA-VFASVAQRSI----RKIA-KNVFLHLHNLDLAFH---LNRQTGALS 239
LR A + + Q I RK+ N FL + FH L A
Sbjct: 391 L-------TLRKAKAPSGLDQSRIPFSERKLKFSNRFL---PVASPFHSHLL---VPASD 437
Query: 240 KII-DRGSRGINFVLSAM---VFNIVPTIFELALISSILSYKCGSEFSLLAVSCVGIYTA 295
I D ++F + V++ GS+ +L+ S
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDT----------------FDGSDLRVLSGSI------ 475
Query: 296 YTLSITQWRTQFRVNMNKAENEAGNKAID 324
+ I + V +D
Sbjct: 476 -SERIVDCIIRLPVKWETTTQFKATHILD 503
Score = 41.6 bits (97), Expect = 0.001
Identities = 56/362 (15%), Positives = 89/362 (24%), Gaps = 160/362 (44%)
Query: 479 NASIEFRDVNFSYIDKHTKRIFSNLNFTI-------PAGKSVAIVGGSGSGKSTIIRLLY 531
S +DV ++ D H K F+I P ++ I G GK IR Y
Sbjct: 1637 KTSKAAQDV-WNRADNHFK---DTYGFSILDIVINNP--VNLTIHFGGEKGKR--IRENY 1688
Query: 532 R--FFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD---------PVLFHDTILYNINY 580
FE K +++ + + + P L
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEIN-EHSTSYTFRSEKGLLSATQFTQPALT---------- 1737
Query: 581 GDKSKSYEETIEAAKLADL-HNSIIKWPN----HYETQVGE------------------- 616
+E A DL +I H +GE
Sbjct: 1738 ---------LMEKAAFEDLKSKGLIPADATFAGH---SLGEYAALASLADVMSIESLVEV 1785
Query: 617 ---RGLKLS----GGEKQR--VAIARAILKNTPILVFDEATSSLDSITENNILSSLKTAS 667
RG+ + E R + AI F + +L + E +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMI-AINPGRVAASFSQE--ALQYVVE-------RVGK 1835
Query: 668 RNKTTICIAHRLSTIKHLLGYKAHRKTSTNLVRGNSSAMRSMSLSRFSQVHLNRYLHTSS 727
R + I N N Q
Sbjct: 1836 RTGWLVEIV--------------------NY---NVENQ---------Q----------- 1852
Query: 728 AAYV--GNKQG-DKPSPSTL--IKTQKRNCFHPGASTLTTTNEIETAKEEVT-SQEMIKA 781
YV G+ + D + + L IK QK I+ + + + S E ++
Sbjct: 1853 --YVAAGDLRALDTVT-NVLNFIKLQK----------------IDIIELQKSLSLEEVEG 1893
Query: 782 ML 783
L
Sbjct: 1894 HL 1895
Score = 35.4 bits (81), Expect = 0.10
Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 39/171 (22%)
Query: 617 RGLKLSGGEKQRVAIARAILKNTPILVF-----DEATSSLDSITENNILSSLKTASRNKT 671
R L LS G + +L T ++ L TE A+ ++
Sbjct: 7 RPLTLSHGS-----LEHVLLVPTASFFIASQLQEQFNKILPEPTEG-------FAADDEP 54
Query: 672 TICIAHRLSTIKHL----LGYKAHRKTSTNLVRGNSSAMRSMSLSRFSQVHL-NRYLHTS 726
+T L LGY + + + G + ++ L+ F +L +H
Sbjct: 55 --------TTPAELVGKFLGYVSSLVEPSKV--GQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 727 SAAYVGNKQGDKPSPSTLIKT-------QKRNCFHPGASTLTTTNEIETAK 770
+A + LIK KR S L A+
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Score = 32.7 bits (74), Expect = 0.65
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 28/97 (28%)
Query: 702 NSSAMRSMSLS----RFSQVHLNRYLHTSSAAYVGNKQGDKPSPSTLIKTQKRNCFHPGA 757
++ + R ++LS L +A++ I +Q + F
Sbjct: 2 DAYSTRPLTLSHGSLEHV-------LLVPTASFF-------------IASQLQEQF---N 38
Query: 758 STLTTTNEIETAKEEVTSQ-EMIKAMLTHIWPKDEPQ 793
L E A +E T+ E++ L ++ EP
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 51.0 bits (123), Expect = 4e-07
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 501 SNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSL-RRH 559
++ ++ G I+G +GSGKST+I ++ F + + G +Y + K+I + + L
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83
Query: 560 IAIVPQDPVLFHD-TILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERG 618
I Q P + T+L N+ G+ + L++ K E ++ E+
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEICPGE---------SPLNSLFYKKWIPKEEEMVEKA 134
Query: 619 LK-----------------LSGGEKQRVAIARAILKNTPILVFDE 646
K LSGG+ + V I RA++ N ++V DE
Sbjct: 135 FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 47.0 bits (111), Expect = 2e-05
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 13/113 (11%)
Query: 584 SKSYEETIEAAKLADLHNSII-KWPNHYETQVGERGLK-----LSGGEKQRV------AI 631
+ E ++ N V G + LSGGE+ + A+
Sbjct: 206 GELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAM 265
Query: 632 ARAILKNTPILVFDEATSSLDSITENNILSSLKT-ASRNKTTICIAHRLSTIK 683
+ + +L+ DE T LD +++ ++ + I ++H
Sbjct: 266 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 318
Score = 31.9 bits (72), Expect = 0.69
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTII 527
R S+ G I+G +GSGKS+++
Sbjct: 12 RSHSDTVVEFKEG-INLIIGQNGSGKSSLL 40
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 46.4 bits (110), Expect = 2e-05
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 588 EETIEAAKLADLHNSIIKWPNHYETQV----GERGLK-LSGGEKQRVAIARAI------- 635
+ EA DL S ++ +E +V G + LSGGE+ VA++ +
Sbjct: 243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALI 302
Query: 636 LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHR 678
++ DE T LD + + I I H
Sbjct: 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHH 345
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 44.0 bits (105), Expect = 9e-05
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL-----YRFFEPNAGAIYIDGKNINDV 551
+ I +N +P G+ A++G +G+GKST+ ++L Y G I +DG+NI ++
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY---TVERGEILLDGENILEL 72
Query: 552 DLD 554
D
Sbjct: 73 SPD 75
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 43.3 bits (103), Expect = 2e-04
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL-----YRFFEPNAGAIYIDGKNINDV 551
K I L+ + G+ AI+G +GSGKST+ L Y E G + GK++ +
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY---EVTGGTVEFKGKDLLAL 89
Query: 552 DLD 554
+
Sbjct: 90 SPE 92
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 621 LSGGEKQRVAIA------RAILKNTPILVFDEATSSLDSITENNILSSLKTASRN-KTTI 673
LSGGE+ + +A + +L+ DE T LD +++ ++ + I
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 674 CIAHRLSTIK 683
++H
Sbjct: 118 LVSHDEELKD 127
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 39.8 bits (94), Expect = 0.004
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKST-IIRLLYR 532
++ + P G ++ G SGSGKST + +L
Sbjct: 660 GIDVSFPLGVLTSVTGVSGSGKSTLVNDILAA 691
Score = 34.4 bits (80), Expect = 0.16
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTII 527
+++ +P + G SGSGKS++
Sbjct: 38 SVDLDLPRDALIVFTGLSGSGKSSLA 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 39.4 bits (93), Expect = 0.005
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKST-IIRLLYR 532
N++ IP G VA+ G SGSGKST + +LY+
Sbjct: 642 NVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYK 673
Score = 33.3 bits (77), Expect = 0.38
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTII 527
N++ IP GK V + G SGSGKS++
Sbjct: 36 NIDVEIPRGKLVVLTGLSGSGKSSLA 61
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 38.2 bits (89), Expect = 0.005
Identities = 23/154 (14%), Positives = 44/154 (28%), Gaps = 27/154 (17%)
Query: 492 IDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV 551
+ + + L+ P + VA+ G GSGKST+ L
Sbjct: 4 LAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA------------------- 44
Query: 552 DLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYE 611
L + +VP D + +L + K ET + L +++
Sbjct: 45 ALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPR-KGAPETFDFEGFQRLCHALKHQERVIY 103
Query: 612 TQVGERGLKLSGGEKQRVAIARAILKNTPILVFD 645
+A A + + + +
Sbjct: 104 PL-------FDRARDIAIAGAAEVGPECRVAIIE 130
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 39.4 bits (93), Expect = 0.005
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKST-IIRLLYR 532
N++ IP G V + G SGSGKS+ ++ LY
Sbjct: 602 NIDVEIPLGVFVCVTGVSGSGKSSLVMETLYP 633
Score = 32.1 bits (74), Expect = 0.94
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKST 525
N+ IP + V I G SGSGKS+
Sbjct: 16 NITVRIPKNRLVVITGVSGSGKSS 39
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 39.1 bits (92), Expect = 0.006
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKST-IIRLLYR 532
N++ IP G VA+ G SGSGKST + +LY+
Sbjct: 340 NVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYK 371
Score = 29.8 bits (68), Expect = 4.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTII 527
N++ IP GK V + G SGSGKS++
Sbjct: 36 NIDVEIPRGKLVVLTGLSGSGKSSLA 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 39.0 bits (92), Expect = 0.007
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKST-IIRLLYR 532
NL+ P G ++ G SGSGKST + + L
Sbjct: 515 NLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546
Score = 32.5 bits (75), Expect = 0.76
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKST 525
+++ +P V G SGSGKS+
Sbjct: 28 DISVKVPRDALVVFTGVSGSGKSS 51
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 37.4 bits (86), Expect = 0.007
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDP 567
G + + G GSGKSTI L P ++ D L +I DP
Sbjct: 7 LGGNILLLSGHPGSGKSTIAEALAN--LPGVPKVHFHS--------DDLWGYIKHGRIDP 56
Query: 568 VL 569
L
Sbjct: 57 WL 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.009
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 338 EKFEADRYEGVLKKYEQAALKTSTSLATLNFGKAQYE 374
EK + + LK Y A ++ +LA KA E
Sbjct: 18 EKQALKKLQASLKLY---ADDSAPALAI----KATME 47
Score = 36.1 bits (82), Expect = 0.015
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 445 RQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIE 483
+QA +Q +L L + A AL + A++E
Sbjct: 19 KQALKKLQA--SLKLYAD---DSAPALAI-----KATME 47
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 37.1 bits (86), Expect = 0.010
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+ I G + SGK+T+ + L + PN I D
Sbjct: 24 IGISGVTNSGKTTLAKNLQKHL-PNCSVISQD 54
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 36.8 bits (86), Expect = 0.014
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+ I GG+ SGK+T+ + L R + +D
Sbjct: 9 IGIAGGTASGKTTLAQALARTLGERVALLPMD 40
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 37.2 bits (86), Expect = 0.015
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD 566
+ + G G GKST + L + + ++ + D +R + +
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILS-------KNNIDVIVLGSDLIRESFPVWKEK 53
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 35.3 bits (82), Expect = 0.034
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 621 LSGGEKQRVAIAR--AIL--KNTPILVFDEATSSLDSITENNI---LSSLKTASRNKTTI 673
+SGGEK A+A AI K P +FDE + LD + N+ +K +S+ I
Sbjct: 65 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLD---DANVKRVADLIKESSKESQFI 121
Query: 674 CIAHRLST 681
I R
Sbjct: 122 VITLRDVM 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 35.3 bits (81), Expect = 0.038
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 12/49 (24%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
+ + G +GK+T+ + L + D+ + +
Sbjct: 8 IIVTGHPATGKTTLSQALATGL----RLPLLSK--------DAFKEVMF 44
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 35.4 bits (82), Expect = 0.040
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI 543
+ I G S SGK+T+ L + ++ +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCV 55
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 36.0 bits (83), Expect = 0.049
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 621 LSGGEKQRV------AIARAILKNTPILVFDEATSSLDSITENNILSSLKT-ASRNKTTI 673
LSGGE+ + ++A DE SSLD+ + I S LK NK +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 674 CIAH 677
I H
Sbjct: 340 FITH 343
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 35.1 bits (81), Expect = 0.054
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 495 HTKRIFSNLNFTIPAGKS---VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDV 551
H+ + + + GG+ SGKST+ + N + + + +
Sbjct: 7 HSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN--EVEQRQRKVVIL 64
Query: 552 DLDS 555
D
Sbjct: 65 SQDR 68
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 35.4 bits (81), Expect = 0.062
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPN 537
+++ G SG+G ST+ + F
Sbjct: 8 ISVTGSSGAGTSTVKHTFDQIFRRE 32
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 35.4 bits (81), Expect = 0.065
Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD 572
+ +G GSGKST R F N G I + D R+ I +
Sbjct: 5 ILTIGCPGSGKSTWAR---EFIAKNPGFYNI--------NRDDYRQSIMAHEERDE---- 49
Query: 573 TILYNINYGDKSKSYEETIEAAKLA 597
Y + + AK
Sbjct: 50 ---YKYTKKKEGIVTGMQFDTAKSI 71
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 34.4 bits (79), Expect = 0.073
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 11/54 (20%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD 566
+ +G GSGKST R F N G I + D R+ I +
Sbjct: 5 ILTIGCPGSGKSTWAR---EFIAKNPGFYNI--------NRDDYRQSIMAHEER 47
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 34.0 bits (77), Expect = 0.10
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+ + + GGS +GKS I+R L A +D
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 34.4 bits (79), Expect = 0.11
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 14/54 (25%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQD 566
+ + GG+ SGKS++ + + N ++D ++ + I+ QD
Sbjct: 25 IGVSGGTASGKSSVCAKIVQLLGQN--------------EVDYRQKQVVILSQD 64
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 34.6 bits (79), Expect = 0.14
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 512 SVAIVGGSGSGKSTII-RLLYRFFEPNAGAIYID 544
+ I+ G+GKS LL R + + I ID
Sbjct: 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 33.4 bits (77), Expect = 0.20
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
GK + I G +GK+T +LY+ +PN
Sbjct: 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 33.4 bits (77), Expect = 0.20
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFE 535
G +A G GSGKS+ LL + E
Sbjct: 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 33.3 bits (75), Expect = 0.25
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 490 SYIDKHTKRIFSNLNFTIPAGKS-------VAIVGGSGSGKSTIIRLLYRFFEPNAGAIY 542
Y D K + ++ GK + + G SG+GK+TI R+ + F+ N +
Sbjct: 5 DYTDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGN--IVI 62
Query: 543 IDG 545
IDG
Sbjct: 63 IDG 65
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, ADP, DCMP, D
transferase; 2.00A {Mycobacterium smegmatis} PDB: 3r8c_A
4die_A*
Length = 233
Score = 32.8 bits (76), Expect = 0.34
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
VA+ G +G+GKS++ R L R GA Y+D
Sbjct: 12 VAVDGPAGTGKSSVSRGLARAL----GARYLD 39
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 32.1 bits (73), Expect = 0.36
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 511 KSVAIVGGSGSGKSTIIRLL 530
K + I G GSGKS +LL
Sbjct: 2 KVILITGMPGSGKSEFAKLL 21
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 32.3 bits (74), Expect = 0.36
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFE 535
G + G SGK+T +
Sbjct: 4 GALIVFEGLDKSGKTTQCMNIMESIP 29
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 32.4 bits (75), Expect = 0.37
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
V I G S SGKS++ R + G Y+
Sbjct: 5 VTIDGPSASGKSSVARRVAAAL----GVPYLS 32
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 33.0 bits (76), Expect = 0.38
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 621 LSGGEKQRVAIAR--AIL--KNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIA 676
LSGGEK V +A A++ K +P V DE S LD LK S++ I I
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279
Query: 677 HRLSTI 682
H +
Sbjct: 280 HNKIVM 285
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 32.6 bits (75), Expect = 0.40
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFE 535
GK + G SGKST +LL + +
Sbjct: 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 32.4 bits (75), Expect = 0.40
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+AI G + SGKST+ +++ + F G Y+D
Sbjct: 19 IAIDGPASSGKSTVAKIIAKDF----GFTYLD 46
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 32.2 bits (74), Expect = 0.43
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 492 IDKHTKRIFSNLNFTIPAGKSVAIV--GGSGSGKSTIIRLLYRFFEPNAGAI 541
+ H L S+ I G GSGK+T LL + G
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVN 52
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 31.9 bits (72), Expect = 0.44
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 511 KSVAIVGGSGSGKSTIIRLL-----YRFF-------EPNAGAIYIDGKNINDVDLDSLRR 558
++ + G G GK+T+ + L ++ E Y + + +D D +
Sbjct: 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 71
Query: 559 HI 560
+
Sbjct: 72 EL 73
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 33.3 bits (76), Expect = 0.49
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 512 SVAIVGGSGSGKSTIIRLL 530
++ +VG +G GK+ + +
Sbjct: 925 ALILVGKAGCGKTATWKTV 943
Score = 32.1 bits (73), Expect = 0.91
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 392 SAIFSTAMTLSMIFAAREIAHGNLTVGDLVMVNGLLFQLSMPLGFLGSVYREVRQAFID- 450
+ + + + ++ NL L V LL + S+ G E ++AFI
Sbjct: 1138 NKLETAVQLAVHLISSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQT 1197
Query: 451 MQTMFTLMLKEPTI-------KNKANALPLVLTTSNASIEFRDVNFSYI-----DKHTKR 498
+ T F +E + +K + + S+E +V I D T +
Sbjct: 1198 INTYFGHDSQELSDYSTIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTID--TIK 1255
Query: 499 IFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEP 536
+ + + + + G GSGK+ I+ R
Sbjct: 1256 HEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSL 1293
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 32.2 bits (74), Expect = 0.49
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFE 535
G V + G G+GKST L
Sbjct: 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A
{Staphylococcus aureus}
Length = 219
Score = 32.0 bits (74), Expect = 0.50
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+A+ G + +GKSTI + + IY+D
Sbjct: 6 IALDGPAAAGKSTIAKRVASEL----SMIYVD 33
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 32.2 bits (74), Expect = 0.51
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFE 535
G + + G +GKST R L
Sbjct: 9 GALIVLEGVDRAGKSTQSRKLVEALC 34
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 32.2 bits (73), Expect = 0.51
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 507 IPAGKSVAIVGGSGSGKSTI 526
P G +V + GG+G+GK+T
Sbjct: 27 FPEGTTVLLTGGTGTGKTTF 46
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 32.2 bits (74), Expect = 0.52
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 517 GGSGSGKSTIIRLLYRFFE 535
G G+GK+T ++ E
Sbjct: 10 GLEGAGKTTARNVVVETLE 28
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 32.0 bits (74), Expect = 0.54
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+ I G SG+GK T+ + + +D
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEAL----QWHLLD 35
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 31.7 bits (73), Expect = 0.61
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 517 GGSGSGKSTIIRLLYRFFE 535
G GSGK+T + LY + +
Sbjct: 7 GIDGSGKTTQAKKLYEYLK 25
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 31.9 bits (73), Expect = 0.65
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 507 IPAGKSVAIVGGSGSGKSTI 526
IP G +A+ G G+GK+
Sbjct: 20 IPQGFFIALTGEPGTGKTIF 39
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 31.7 bits (73), Expect = 0.65
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 517 GGSGSGKSTIIRLLYRFFE 535
G GSGKST I+LL ++ E
Sbjct: 7 GIDGSGKSTQIQLLAQYLE 25
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 31.9 bits (73), Expect = 0.66
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 517 GGSGSGKSTIIRLLYRFFE 535
G G+GK T++ L F
Sbjct: 7 GVDGAGKRTLVEKLSGAFR 25
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 31.9 bits (73), Expect = 0.68
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFE 535
K + I G G+GKST I+++ +
Sbjct: 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 31.4 bits (72), Expect = 0.70
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 517 GGSGSGKSTIIRLLYRFFEPN 537
G GSGK+T+I +Y +
Sbjct: 9 GPEGSGKTTVINEVYHRLVKD 29
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 31.9 bits (71), Expect = 0.75
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 490 SYIDKHTKRIFSNLNFTIPAGKS-------VAIVGGSGSGKSTIIRLLYRFFEPNAGAIY 542
++ DK + ++ + GK + G GSGK+++ ++ E I
Sbjct: 6 NFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE--ETQGNVIV 63
Query: 543 IDG 545
ID
Sbjct: 64 IDN 66
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 31.5 bits (72), Expect = 0.79
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 517 GGSGSGKSTIIRLLYRFFEPN 537
G GSGK+T+I +Y +
Sbjct: 33 GPEGSGKTTVINEVYHRLVKD 53
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 31.5 bits (72), Expect = 0.80
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 506 TIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
++ GK + G G+GK+T ++ + G
Sbjct: 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRH 59
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 32.0 bits (72), Expect = 0.90
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 493 DKHTKRIFSNLNFTI--PAGKSVAIVGGSGSGKSTIIRL----LYRFFEPNAGAIYIDGK 546
+ ++I S L ++ I G +G+GK+ +++ L++ F +YI+ +
Sbjct: 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85
Query: 547 NIND 550
I+
Sbjct: 86 QIDT 89
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 31.6 bits (72), Expect = 0.92
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 507 IPAGKSVAIVGGSGSGKSTI 526
IP V + GG G+GK+
Sbjct: 20 IPERNVVLLSGGPGTGKTIF 39
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.0 bits (73), Expect = 0.95
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 621 LSGGEKQRVAIAR--AIL--KNTPILVFDEATSSLDSITENNI--LSSLKTASRNKTT-- 672
LSGGEK A+A AI + +P V DE ++LD N+ +++ RN
Sbjct: 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALD---ITNVQRIAAYIRRHRNPDLQF 390
Query: 673 ICIAHRLSTIKH---LLG-YKAHRKTSTNLV 699
I I+ + + + L+G Y+ ++ S+ ++
Sbjct: 391 IVISLKNTMFEKSDALVGVYRQQQENSSKII 421
Score = 30.8 bits (70), Expect = 2.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 488 NF-SYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTII 527
NF SY + NFT +I+G +GSGKS ++
Sbjct: 11 NFKSYRGVTKVGFGES-NFT-------SIIGPNGSGKSNMM 43
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.8 bits (72), Expect = 0.97
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 507 IPAGKSVAIVGGSGSGKSTI-IRLLYRFFEPNAGAIYI 543
+ G +G+GK+ + R + AI
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 315
Score = 30.3 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 507 IPAGKSVAIVGGSGSGKSTI 526
+P G+S + G SG+GK+
Sbjct: 36 LPIGRSTLVSGTSGTGKTLF 55
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 31.7 bits (71), Expect = 1.0
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 474 VLTTSNASIEFR----DVNFSYIDKHT-KRIFSNLNFTI-------PAGKSVAIVGGSGS 521
+ + ++ N + + + NL+F + G V IVGGS +
Sbjct: 90 IYAVEETELLWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQT 149
Query: 522 GKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLD 554
GK+++ R L + A+ + ++LD
Sbjct: 150 GKTSLSRTLCSY------ALKFNAYQPLYINLD 176
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 30.8 bits (70), Expect = 1.1
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 5/30 (16%)
Query: 511 KSVAIVGGSGSGKSTIIRLL-----YRFFE 535
+ + G KST+ L Y +
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIK 31
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 31.1 bits (71), Expect = 1.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLL 530
G+ G SG GKS+++ L
Sbjct: 214 TGRISIFAGQSGVGKSSLLNAL 235
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 31.3 bits (70), Expect = 1.3
Identities = 27/302 (8%), Positives = 84/302 (27%), Gaps = 50/302 (16%)
Query: 493 DKHTKRIFSNLNFTI--PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNIND 550
+ + + + + S +G +G+GK+ + + ++
Sbjct: 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN------------------ 67
Query: 551 VDLDSLRRHIAIVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHY 610
+++ +++ D +N + + + + LA +
Sbjct: 68 -EIEEVKKEDEEYK-------DVKQAYVNCREVGGTPQAVLS--SLAGKLTGFSVPKHGI 117
Query: 611 ETQVGERGLKLSGGEKQRVAIARAILKNTPILVFDEATSSLDSITENNILSSLKTASRNK 670
+ I I+ DE + + + +L L + N
Sbjct: 118 NLG------------EYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANI 165
Query: 671 TTICIAHRLSTIKHLLG-YKAHRKTSTNLVRGNSSAMRSMSLSRFSQVHLNRYLHTSS-- 727
+ I I++ ++ ++ + S ++ ++ + +
Sbjct: 166 SVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILS 225
Query: 728 --AAYVGNKQGDKPSPSTLIKTQKRNCFHPGASTLTTTNEIETAKEEVTSQEMIKAMLTH 785
AA + GD + R + ++ A + + +I+A+
Sbjct: 226 YIAAISAKEHGD---ARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKAL 282
Query: 786 IW 787
+
Sbjct: 283 PF 284
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 31.3 bits (71), Expect = 1.3
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 96 FHPGASTLTTTNEIETAKEEVTSQEMIKAMLTHIWPKDEPQIRNRVKVAMGLLYAVDELN 155
F L + T V + A L ++ R V + + N
Sbjct: 81 FSNEEVVLKQDHLDRTPAHCVIFSGISNAYL-----ENIAAQAKRKLVKLFERDDIAIYN 135
Query: 156 TGIVSDGALLELTNATDALIASATSIILGYGIA 188
+ +G ++ TD I + +LG G
Sbjct: 136 SIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGRT 168
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for structural
GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Length = 192
Score = 30.6 bits (70), Expect = 1.3
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+ + G G+GKST+ + GA ++
Sbjct: 15 IGVTGKIGTGKSTVC----EILKNKYGAHVVN 42
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 30.7 bits (69), Expect = 1.4
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 11/49 (22%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIA 561
I G +G GKST + L + + YI+G D + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLD---NSAYIEG--------DIINHMVV 42
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 30.3 bits (68), Expect = 1.4
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 513 VAIVGGSGSGKSTIIRLLYR 532
+ I G G GK+ L+
Sbjct: 8 IWINGPFGVGKTHTAHTLHE 27
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 30.5 bits (68), Expect = 1.5
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 508 PAGKSVAIVGGSGSGKSTIIRLL 530
P G ++ I G G+GK+++ ++
Sbjct: 8 PKGINILITGTPGTGKTSMAEMI 30
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 30.8 bits (69), Expect = 1.6
Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 37/220 (16%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVL 569
++G +GKS+II++ E N IY+D + + + S + + +
Sbjct: 30 APITLVLGLRRTGKSSIIKIGIN--ELNLPYIYLDLRKFEERNYISYKDFLLEL------ 81
Query: 570 FHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRV 629
+ + + + + N + +K + K R+
Sbjct: 82 -----------QKEINKLVKRLPSL--------LKALKNIQGIVIMGNEIKFNWNRKDRL 122
Query: 630 AIARAI------LKNTPILVFDEATSSLDSITENNILSSLKTASRNKTTICIAHRLSTIK 683
+ A + K+ I+V DEA L + N+L +L A N I S +
Sbjct: 123 SFANLLESFEQASKDNVIIVLDEA-QELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEM- 180
Query: 684 HLLGYKAHRKTSTNLVRGNSSAMRSMSLSRFSQVHLNRYL 723
LL + + + G + + + L FS+ +L
Sbjct: 181 GLLYDYLRVEDPESPLFGRAFST--VELKPFSREEAIEFL 218
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 30.9 bits (70), Expect = 1.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 508 PAGKSVAIVGGSGSGKSTIIRLL 530
P V + G G+GKST +R L
Sbjct: 43 PGIGGVLVFGDRGTGKSTAVRAL 65
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.0 bits (67), Expect = 1.7
Identities = 18/148 (12%), Positives = 35/148 (23%), Gaps = 15/148 (10%)
Query: 511 KSVAIVGGSGSGKSTIIRLLYRFFEP---NAGAIYIDGKNINDVDL---DSLRRHIAIVP 564
+VG SGK+T++ G + G DS+R A
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAV 64
Query: 565 QDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNH-----YETQVGERGL 619
V + ++ ++ + L +++ E
Sbjct: 65 ATAVEGDGLLQLHLRRPL--WRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDW 122
Query: 620 KLSGGEKQRVAIA--RAILKNTPILVFD 645
A+ + VF
Sbjct: 123 ASLQHLANIRAVIAWEPLEGPLAHPVFS 150
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 30.5 bits (69), Expect = 1.8
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
Query: 510 GKSVAIVGGSGSGKSTIIRLL-----YRFF 534
G+S+ +VG GSGK+T+ +++ Y FF
Sbjct: 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 30.2 bits (69), Expect = 1.9
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 493 DKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTI-IRLLYRFF----EPNAGA----IYI 543
H NL F P K V IVG SGKS + R L + P G I +
Sbjct: 4 HHHHSSGRENLYFQGPELK-VGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVV 62
Query: 544 DGKNI 548
DG++
Sbjct: 63 DGQSY 67
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 29.9 bits (68), Expect = 2.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 510 GKSVAIVGGSGSGKSTIIRLL 530
+VG GSGKSTI R L
Sbjct: 2 APKAVLVGLPGSGKSTIGRRL 22
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 30.0 bits (67), Expect = 2.0
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 511 KSVAIVGGSGSGKSTIIRLLYRFFE---PNAGAIYIDG---KNINDVDLDSLRRHIA 561
++IVG S SGK+T+I + + I+ DS + + +
Sbjct: 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNS 59
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.0 bits (67), Expect = 2.1
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 506 TIPAGKSVAIVGG-SGSGKSTIIRLLYRFFEPNAGAIYIDG 545
T + ++ G SGSGKS + + A ++DG
Sbjct: 3 TTNHDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 30.9 bits (70), Expect = 2.2
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 498 RIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNI 548
+F + P G + + G G+GK+ I R + E A I+G I
Sbjct: 228 ALFKAIGVKPPRG--ILLYGPPGTGKTLIARAVAN--ETGAFFFLINGPEI 274
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.2 bits (69), Expect = 2.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLL 530
GK + G SG GKS+++ +
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAI 189
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 30.4 bits (69), Expect = 2.7
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
+ + + G +GSGK+T+++ L + +
Sbjct: 174 LERVIVVAGETGSGKTTLMKALMQEIPFD 202
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.4 bits (68), Expect = 2.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
VA+ G +GSGKS+ I L
Sbjct: 72 VAVTGETGSGKSSFINTL 89
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 29.5 bits (67), Expect = 2.8
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 490 SYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTII 527
SY +K FS FT AIVG +GSGKS I
Sbjct: 14 SYGNKKVVIPFSK-GFT-------AIVGANGSGKSNIG 43
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 30.5 bits (69), Expect = 3.0
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYI 543
V + GG G+GKST + + E + +
Sbjct: 207 VVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237
Score = 28.5 bits (64), Expect = 9.5
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 587 YEETIEAAKLADLHNSIIKWPNHYETQVGERGLKLSGGEKQRVAIARAILKNTPIL 642
E+ + A+ + L + + + + E+Q + + +L
Sbjct: 155 AEKKL-ASLIRTLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLAGHRLVVL 209
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 29.7 bits (66), Expect = 3.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 490 SYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR 532
S +D T+ ++ T + V ++G SGSGK+TI +
Sbjct: 9 SGVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVAD 51
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 29.4 bits (67), Expect = 3.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 511 KSVAIVGGSGSGKSTIIRLL 530
+++ +VG G+GKSTI R L
Sbjct: 5 RNIFLVGPMGAGKSTIGRQL 24
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 29.8 bits (68), Expect = 3.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLL 530
G + G SG GKS+I+ L
Sbjct: 164 EGFICILAGPSGVGKSSILSRL 185
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate
binding, plant cell WALL degradation, hydrolase,
cellulases; 1.80A {Cellvibrio japonicus}
Length = 347
Score = 29.8 bits (66), Expect = 3.5
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 16/74 (21%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562
G + S +G S I + ID + LD+ ++ + +
Sbjct: 45 TIVA---GSRLTAEMQSSNGNSWI-------------DVIIDNHPPTSIKLDAQQQTVEL 88
Query: 563 VPQDPVLFHDTILY 576
H +
Sbjct: 89 FHFPNSGEHRVEII 102
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 29.3 bits (65), Expect = 3.6
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDG 545
S+ ++G SGSGKS++ + G +I+G
Sbjct: 16 RFPGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 29.7 bits (66), Expect = 4.0
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 507 IPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYID 544
+ + + G G GKST R++ + +Y
Sbjct: 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP 41
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 29.7 bits (67), Expect = 4.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
GK+V + GG+GSGK+T I+ + F
Sbjct: 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKE 198
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.5 bits (67), Expect = 4.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLL 530
K+ G SG GKS+++ +
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAI 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 29.7 bits (67), Expect = 4.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 509 AGKSVAIVGGSGSGKSTIIRLLYRFFEPNA 538
S +VG + SGK+T + + F P+A
Sbjct: 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDA 288
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 28.9 bits (64), Expect = 4.2
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 510 GKSVAIVGGSGSGKSTI-IRLLYR 532
V I G + GKS + + L+ R
Sbjct: 16 KMGVLITGEANIGKSELSLALIDR 39
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 29.9 bits (67), Expect = 4.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 513 VAIVGGSGSGKSTIIRLL 530
+ + G +G+GKS ++R L
Sbjct: 56 LLVNGATGTGKSVLLREL 73
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 29.0 bits (66), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 517 GGSGSGKSTIIRLLYRFFEPNAGAIYI-DGKNI 548
G SG+GK+T+ L + + Y DG NI
Sbjct: 12 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 29.1 bits (66), Expect = 4.4
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 511 KSVAIVGGSGSGKSTIIRLL-----YRFF 534
+ + +VG G G +T+ R L Y F
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFV 31
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.9 bits (64), Expect = 4.5
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFE 535
K V + G G G +T +L
Sbjct: 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 4.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 494 KHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLL 530
K K+ F FT+ +VG SG GKST+I L
Sbjct: 11 KSVKKGF---EFTL------MVVGESGLGKSTLINSL 38
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 29.8 bits (67), Expect = 4.8
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 10/138 (7%)
Query: 437 LGSVYREVRQAFIDMQTMFTLMLKEPTIKNKANALPLVLTTSNASIEFRDVNFSYIDKHT 496
L Y+++ D + + + ++ + + VL + R V F K
Sbjct: 76 LHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEG--GVPQRPVVFVTRKKLV 133
Query: 497 KRIFSNLNFTIPAGKSVAIVGGSGSGKSTIIRLLYR-------FFEPNAGAIYIDGKNIN 549
I L+ V I G +G GKS + R F + + GK
Sbjct: 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV-GKQDK 192
Query: 550 DVDLDSLRRHIAIVPQDP 567
L L+ + QD
Sbjct: 193 SGLLMKLQNLCTRLDQDE 210
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 29.0 bits (66), Expect = 4.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
G + + G SG GK T+ +++ E +
Sbjct: 8 GLLIVLSGPSGVGKGTVREAVFKDPETS 35
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 29.5 bits (64), Expect = 5.1
Identities = 19/77 (24%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 312 NKAENEAGNKAIDSLINYETVKYFNNEKFEADRYEGVLKKYEQAALKTSTSLATLNFGKA 371
A N A N A+ + E YE L KY+ K LA
Sbjct: 35 AVAANNAANAALTA----ENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLK 90
Query: 372 QYEQAALKTSTSLATLN 388
YE +LA L
Sbjct: 91 AYEDEQTSIKAALAELE 107
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 28.7 bits (65), Expect = 5.1
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 511 KSVAIVGGSGSGKSTIIRLL 530
++ ++G G+GK+++ L
Sbjct: 6 TNIYLIGLMGAGKTSVGSQL 25
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.9 bits (64), Expect = 5.2
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 17/109 (15%)
Query: 511 KSVAIVGGSGSGKSTIIRLL--------YRFFEPNAGAIYIDG-KNINDVDLDSLRRHIA 561
K + G G GKST++ + N G + + R ++
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLS 61
Query: 562 IVPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIKWPNHY 610
+ Q + ++ E D H ++I+ P+ Y
Sbjct: 62 VEKQKKLQIDAAK-------GIAEEARAGGEGYLFIDTH-AVIRTPSGY 102
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 28.7 bits (65), Expect = 5.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 517 GGSGSGKSTIIRLLYRFFEPNAGAIYI-DGKNI 548
G SGSGKST+ L + YI DG N+
Sbjct: 32 GLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 29.3 bits (65), Expect = 5.4
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAIVPQDPVLFHD 572
V VG +GSGK+T+ R+ E N Y++ D + L +I ++ V +
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL----DTGVKELPYEPSIDVREFVTVEE 72
Query: 573 TI 574
+
Sbjct: 73 IM 74
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 29.3 bits (65), Expect = 5.4
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 21/115 (18%)
Query: 507 IPAGKSVAIVGGSGSGKSTII-----------RLLYRFFEPNAGAIYIDGKNINDVDLDS 555
+ AG A+V G+GKS + LL P IY+ + +
Sbjct: 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPA----EDPPTA 82
Query: 556 LRRHIAI------VPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSII 604
+ + + + ++ + + E + K A ++
Sbjct: 83 IHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLM 137
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 28.7 bits (65), Expect = 5.5
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 513 VAIVGGSGSGKSTI-IRLLYRFF----EPNAGAIY-----IDGKNI 548
+AI+G G+GKS + ++ L + F +PN Y +D + +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPV 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 29.0 bits (64), Expect = 6.1
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 493 DKHTKRIFSNLNFTI----PAGKSVAIVGGSGSGKSTIIRLLYRFFE--PNAGAIYIDGK 546
++ +++ L + ++G G+GK+ +R L+ ++ A +YI+G
Sbjct: 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82
Query: 547 NIND 550
+
Sbjct: 83 IYRN 86
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 29.4 bits (66), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 517 GGSGSGKSTIIRLLYRFFEPNAGAIYI-DGKNI 548
G SG+GK+T+ L + + Y DG NI
Sbjct: 59 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 29.0 bits (65), Expect = 6.4
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 465 KNKANALPLVLTTSNASIEFRDVNFSYIDKHTKRIFSNL--------NFTIPAGKSVAIV 516
K A+ + + +R ++ S ID + + K + +
Sbjct: 99 AQKQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLY 158
Query: 517 GGSGSGKS 524
G G GKS
Sbjct: 159 GDMGIGKS 166
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 28.4 bits (64), Expect = 7.0
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 517 GGSGSGKSTIIRLLYRFFEPNAG-AIYI-DGKNI 548
G S SGKST+ L + Y DG NI
Sbjct: 32 GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 28.8 bits (64), Expect = 7.1
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFE 535
+ V I G +G+G +T+ + +
Sbjct: 38 MKAIKEKKHHVTINGPAGTGATTLTKFIIEALI 70
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.9 bits (64), Expect = 7.2
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 473 LVLTTSNASIEFRDVNFSYIDKHTKRIFSNLNFTIPAGKSVAIVGGSGSGKSTI------ 526
L IE + + +++ + T + A+V G+ +
Sbjct: 82 LQPNKVAEMIENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDN 141
Query: 527 ---IRLLYRFFEPNAGAIYIDGKNINDVDLDSLRR 558
+ L + A + +DG +++ LD +
Sbjct: 142 PVNVNKLAQDSINIAQIVPMDGFHLSRRCLDLFKD 176
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 28.3 bits (64), Expect = 7.2
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 517 GGSGSGKSTIIRLLYRFFEPNAGAIYI-DGKNI 548
G GSGK+TI L + + + DG
Sbjct: 20 GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 29.2 bits (66), Expect = 7.3
Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 1/128 (0%)
Query: 503 LNFTIPAGKSVAIVGGSGSGKSTIIRLLYRFFEPNAGAIYIDGKNINDVDLDSLRRHIAI 562
L P G VAI+G G G T + L + + D L
Sbjct: 487 LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQ 546
Query: 563 VPQDPVLFHDTILYNINYGDKSKSYEETIEAAKLADLHNSIIK-WPNHYETQVGERGLKL 621
Q P ++ + +T L + +K P ++ + GL +
Sbjct: 547 GMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHV 606
Query: 622 SGGEKQRV 629
+ +V
Sbjct: 607 VINGETQV 614
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 29.1 bits (64), Expect = 7.7
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 504 NFTIPAGKSV-AIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
T + V + GG+G+GKST + P+ +
Sbjct: 22 ARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLL 60
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 28.4 bits (64), Expect = 7.9
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 502 NLNFTIPAGKSVAIVGGSGSGKSTIIRLL-----YRFF 534
NL F A + + G G+GK+T+ + F
Sbjct: 17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFI 54
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Length = 562
Score = 29.1 bits (66), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 537 NAGAIYIDGKNINDVDLDSL--RRHIA 561
G +Y+DG + D+ + L RRH+A
Sbjct: 451 PHGVLYVDGLGVGDITEEILADRRHMA 477
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 28.4 bits (63), Expect = 8.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 510 GKSVAIVGGSGSGKSTIIRLLYR 532
G V I G SG GKS L +
Sbjct: 34 GLGVLITGDSGVGKSETALELVQ 56
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 28.3 bits (64), Expect = 8.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 513 VAIVGGSGSGKSTI-IRLLYRFF----EPNAGAIY-----IDGKNI 548
+AI G +G GKS + +R L + F +P + Y ID + +
Sbjct: 31 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVV 76
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.4 bits (63), Expect = 8.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 508 PAGKSVAIVGGSGSGKSTIIRLLYRFFEPN 537
P G + ++G SGSGKS++ +++ +
Sbjct: 1 PLGSKLLLMGRSGSGKSSMRSIIFSNYSAF 30
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.1 bits (62), Expect = 8.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 511 KSVAIVGGSGSGKSTIIRLLYRFFEPNAGAI 541
+ V + G G GK+T+I + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A
{Bacillus subtilis}
Length = 555
Score = 28.7 bits (65), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 538 AGAIYIDGKNINDVDLDSL--RRHIA 561
+G++YIDG I D+ L RR ++
Sbjct: 437 SGSVYIDGSGIGDIGNIVLRDRRILS 462
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 28.2 bits (62), Expect = 9.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 515 IVGGSGSGKSTIIRLL 530
+VG SG GKST+I L
Sbjct: 13 VVGESGLGKSTLINSL 28
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 28.0 bits (62), Expect = 9.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 513 VAIVGGSGSGKSTIIRLLYRFFEPN 537
+ ++G SGKS+I ++++ PN
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPN 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.362
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,368,110
Number of extensions: 679644
Number of successful extensions: 2183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2047
Number of HSP's successfully gapped: 252
Length of query: 816
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 715
Effective length of database: 3,881,772
Effective search space: 2775466980
Effective search space used: 2775466980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)