BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4349
         (80 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
          Protein Lhx9
          Length = 80

 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/45 (93%), Positives = 43/45 (95%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          KRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 8  KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52


>pdb|2DA1|A Chain A, Solution Structure Of The First Homeobox Domain Of At-
          Binding Transcription Factor 1 (Atbf1)
          Length = 70

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          KR RT     QLR ++ YF+IN +P  + +K++A K+GL ++V++
Sbjct: 8  KRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52


>pdb|1BW5|A Chain A, The Nmr Solution Structure Of The Homeodomain Of The Rat
          Insulin Gene Enhancer Protein Isl-1, 50 Structures
          Length = 66

 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 34 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          +T R+RT     QL T+++ +  N  PDA   +QL + TGLS RV++
Sbjct: 2  KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48


>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
          Binding Transcription Factor 1 (Atbf1)
          Length = 80

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          QR KR+RT+    QL  +   + ++ NP  K L  +A + GL KRV+Q
Sbjct: 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62


>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To
          A Dna Oligonucleotide
 pdb|1FJL|B Chain B, Homeodomain From The Drosophila Paired Protein Bound To
          A Dna Oligonucleotide
 pdb|1FJL|C Chain C, Homeodomain From The Drosophila Paired Protein Bound To
          A Dna Oligonucleotide
          Length = 81

 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 22 NSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           S PG  +   QR  R RT+F   QL  ++  F   Q PD    ++LAQ+T L++  +Q
Sbjct: 7  ESEPGIALKRKQR--RSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63


>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant
          R31lE42L
          Length = 67

 Score = 32.3 bits (72), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLS 75
          +R RT+F  +Q+  +++ F +N  P    L+ LAQK  L 
Sbjct: 2  RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLE 41


>pdb|2DA2|A Chain A, Solution Structure Of The Second Homeobox Domain Of At-
          Binding Transcription Factor 1 (Atbf1)
          Length = 70

 Score = 32.3 bits (72), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 40 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79
          T F  +QLR ++ +F+ N  P   + +QL+    L  RV+
Sbjct: 12 TRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVI 51


>pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless
          Homeodomains Bo
 pdb|3A01|F Chain F, Crystal Structure Of Aristaless And Clawless
          Homeodomains Bo
          Length = 67

 Score = 30.4 bits (67), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          +R RT+F   QL  ++  F+    PD    ++LA K GL++  +Q
Sbjct: 7  RRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 51


>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna
          Length = 58

 Score = 30.4 bits (67), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 37 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          R RT+F   QL  ++  F+    PD    ++LA K GL++  +Q
Sbjct: 1  RYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44


>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4,
          Northeast Structural Genomics Consortium (Nesg) Target
          Hr4490c
          Length = 75

 Score = 29.6 bits (65), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          +R RT+F  +QL  ++  F     PD    +QLA +T L++  +Q
Sbjct: 10 RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 54


>pdb|2DN0|A Chain A, Solution Structure Of The Second Homeobox Domain Of
          Human Zinc Fingers And Homeoboxes Protein 3
          Length = 76

 Score = 29.6 bits (65), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 44 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          H QL  +K  F  NQ P   +++ L + TGLS R ++
Sbjct: 17 HEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53


>pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bound To More
          Length = 160

 Score = 29.3 bits (64), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 13/53 (24%), Positives = 29/53 (54%)

Query: 28  GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           G+    R ++ RTS + +    ++  F  NQ P ++D+  +A++  + K V++
Sbjct: 94  GIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 146


>pdb|2CUF|A Chain A, Solution Structure Of The Homeobox Domain Of The Human
          Hypothetical Protein Flj21616
          Length = 95

 Score = 28.9 bits (63), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLA 69
          +++   L  M+SYFN NQ PD    +++A
Sbjct: 13 TWRKECLAVMESYFNENQYPDEAKREEIA 41


>pdb|3CMY|A Chain A, Structure Of A Homeodomain In Complex With Dna
          Length = 61

 Score = 28.5 bits (62), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          +R RT+F   QL  ++  F     PD    ++LAQ+  L++  +Q
Sbjct: 3  RRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 47


>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
          Protein Goosecoid
          Length = 70

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGL 74
          +R RT F   QL  +++ F   + PD    +QLA+K  L
Sbjct: 8  RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHL 46


>pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna
 pdb|2HOS|B Chain B, Phage-selected Homeodomain Bound To Unmodified Dna
 pdb|2HOT|A Chain A, Phage Selected Homeodomain Bound To Modified Dna
 pdb|2HOT|B Chain B, Phage Selected Homeodomain Bound To Modified Dna
          Length = 63

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 76
          KR RT+F   QL  +K  FN N+    +  +QL+ + GL++
Sbjct: 5  KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 45


>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e
 pdb|1P7J|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52e
 pdb|1P7J|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52e
 pdb|1P7J|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52e
          Length = 59

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 76
          KR RT+F   QL  +K  FN N+    +  +QL+ + GL++
Sbjct: 2  KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 42


>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
 pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
 pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
 pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
          Length = 59

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 76
          KR RT+F   QL  +K  FN N+    +  +QL+ + GL++
Sbjct: 2  KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 42


>pdb|1POG|A Chain A, Solution Structure Of The Oct-1 Pou-Homeo Domain
          Determined By Nmr And Restrained Molecular Dynamics
          Length = 67

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 28/50 (56%)

Query: 31 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          SH R ++ RTS + +    ++  F  NQ P ++++  +A +  + K V++
Sbjct: 3  SHMRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIR 52


>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex
 pdb|3HDD|B Chain B, Engrailed Homeodomain Dna Complex
          Length = 60

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 76
          KR RT+F   QL  +K  FN N+    +  +QL+ + GL++
Sbjct: 2  KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 42


>pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex
 pdb|2HDD|B Chain B, Engrailed Homeodomain Q50k Variant Dna Complex
          Length = 61

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 76
          KR RT+F   QL  +K  FN N+    +  +QL+ + GL++
Sbjct: 4  KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 44


>pdb|1CQT|A Chain A, Crystal Structure Of A Ternary Complex Containing An Oca-B
           Peptide, The Oct-1 Pou Domain, And An Octamer Element
 pdb|1CQT|B Chain B, Crystal Structure Of A Ternary Complex Containing An Oca-B
           Peptide, The Oct-1 Pou Domain, And An Octamer Element
          Length = 163

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 28  GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           G+    R ++ RTS + +    ++  F  NQ P ++++  +A +  + K V++
Sbjct: 96  GIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIR 148


>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna
          Complex At 2.8 Angstroms Resolution: A Framework For
          Understanding Homeodomain-Dna Interactions
 pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna
          Complex At 2.8 Angstroms Resolution: A Framework For
          Understanding Homeodomain-Dna Interactions
 pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
          Length = 61

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 76
          KR RT+F   QL  +K  FN N+    +  +QL+ + GL++
Sbjct: 4  KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 44


>pdb|2E19|A Chain A, Solution Structure Of The Homeobox Domain From Human
          Nil-2- A Zinc Finger Protein, Transcription Factor 8
          Length = 64

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 47 LRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          L  +K+Y+ +N  P A++L ++A    L   V++
Sbjct: 15 LSLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48


>pdb|1OCT|C Chain C, Crystal Structure Of The Oct-1 Pou Domain Bound To An
           Octamer Site: Dna Recognition With Tethered Dna-Binding
           Modules
          Length = 156

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 28  GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           G+    R ++ RTS + +    ++  F  NQ P ++++  +A +  + K V++
Sbjct: 89  GIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIR 141


>pdb|2CUE|A Chain A, Solution Structure Of The Homeobox Domain Of The Human
          Paired Box Protein Pax-6
          Length = 80

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
          +R RTSF   Q+  ++  F     PD    ++LA K  L +  +Q
Sbjct: 8  QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52


>pdb|1HF0|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
           To Dna As A Dimer
 pdb|1HF0|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
           To Dna As A Dimer
 pdb|1GT0|C Chain C, Crystal Structure Of A PouHMGDNA TERNARY COMPLEX
          Length = 159

 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 28  GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           G+    R ++ RTS + +    ++  F  NQ P ++++  +A +  + K V++
Sbjct: 93  GIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIR 145


>pdb|3D1N|I Chain I, Structure Of Human Brn-5 Transcription Factor In Complex
           With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|J Chain J, Structure Of Human Brn-5 Transcription Factor In Complex
           With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|K Chain K, Structure Of Human Brn-5 Transcription Factor In Complex
           With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|L Chain L, Structure Of Human Brn-5 Transcription Factor In Complex
           With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|M Chain M, Structure Of Human Brn-5 Transcription Factor In Complex
           With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|N Chain N, Structure Of Human Brn-5 Transcription Factor In Complex
           With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|O Chain O, Structure Of Human Brn-5 Transcription Factor In Complex
           With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|P Chain P, Structure Of Human Brn-5 Transcription Factor In Complex
           With Corticotrophin-Releasing Hormone Gene Promoter
          Length = 151

 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 36  KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79
           ++ RTSF    +  + +YF  N  P  +++ + A++    + V+
Sbjct: 94  RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEXAKELNYDREVV 137


>pdb|1ZTR|A Chain A, Solution Structure Of Engrailed Homeodomain L16a Mutant
          Length = 61

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 76
          KR RT+F   QL   K  FN N+    +  +QL+ + GL++
Sbjct: 4  KRPRTAFSSEQLARAKREFNENRYLTERRRQQLSSELGLNE 44


>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
          Length = 371

 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 32  HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQL 68
           H RT R +   +H  L   + +F  +QN D++D  QL
Sbjct: 147 HGRTLREQGVEEHETLLLRRKFFYSDQNVDSRDPVQL 183


>pdb|1ENH|A Chain A, Structural Studies Of The Engrailed Homeodomain
          Length = 54

 Score = 25.4 bits (54), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 37 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 76
          R RT+F   QL  +K  FN N+    +  +QL+ + GL++
Sbjct: 1  RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 40


>pdb|1DU0|A Chain A, Engrailed Homeodomain Q50a Variant Dna Complex
 pdb|1DU0|B Chain B, Engrailed Homeodomain Q50a Variant Dna Complex
          Length = 57

 Score = 25.4 bits (54), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 37 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSK 76
          R RT+F   QL  +K  FN N+    +  +QL+ + GL++
Sbjct: 1  RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 40


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.126    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,908,582
Number of Sequences: 62578
Number of extensions: 51407
Number of successful extensions: 145
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 35
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)