BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4349
         (80 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Z0S2|LHX2_MOUSE LIM/homeobox protein Lhx2 OS=Mus musculus GN=Lhx2 PE=1 SV=1
          Length = 406

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 47/50 (94%)

Query: 31  SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311


>sp|P50458|LHX2_HUMAN LIM/homeobox protein Lhx2 OS=Homo sapiens GN=LHX2 PE=2 SV=2
          Length = 406

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 47/50 (94%)

Query: 31  SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 311


>sp|P29673|APTE_DROME Protein apterous OS=Drosophila melanogaster GN=ap PE=2 SV=1
          Length = 469

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 48/55 (87%)

Query: 26  GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           GS + S  RTKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQL+QKTGL KRVLQ
Sbjct: 358 GSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQ 412


>sp|A0JNI8|LHX9_BOVIN LIM/homeobox protein Lhx9 OS=Bos taurus GN=LHX9 PE=2 SV=2
          Length = 397

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 46/48 (95%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312


>sp|P36198|LHX2_RAT LIM/homeobox protein Lhx2 OS=Rattus norvegicus GN=Lhx2 PE=2 SV=1
          Length = 426

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 47/50 (94%)

Query: 31  SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           S Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 260 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 309


>sp|Q1LWV4|LHX9_DANRE LIM/homeobox protein Lhx9 OS=Danio rerio GN=lhx9 PE=2 SV=1
          Length = 396

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 46/48 (95%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312


>sp|Q9NQ69|LHX9_HUMAN LIM/homeobox protein Lhx9 OS=Homo sapiens GN=LHX9 PE=1 SV=3
          Length = 397

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 46/48 (95%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312


>sp|Q9WUH2|LHX9_MOUSE LIM/homeobox protein Lhx9 OS=Mus musculus GN=Lhx9 PE=1 SV=3
          Length = 397

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 46/48 (95%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312


>sp|Q68EY3|LHX9_XENLA LIM/homeobox protein Lhx9 OS=Xenopus laevis GN=lhx9 PE=2 SV=1
          Length = 331

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 46/48 (95%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 266 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 313


>sp|Q80W90|LHX9_RAT LIM/homeobox protein Lhx9 OS=Rattus norvegicus GN=Lhx9 PE=2 SV=1
          Length = 388

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 46/48 (95%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           Q+TKRMRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 256 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 303


>sp|A2I8Z7|LHX9_ASTFA LIM/homeobox protein Lhx9 OS=Astyanax fasciatus GN=lhx9 PE=2 SV=1
          Length = 377

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           Q+TK MRTSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 246 QKTKXMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 293


>sp|Q90881|LHX9_CHICK LIM/homeobox protein Lhx9 OS=Gallus gallus GN=LHX9 PE=2 SV=2
          Length = 397

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           Q+TKRM TSFKHHQLRTMKSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 265 QKTKRMATSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312


>sp|A2PZF9|LHX9_GLARU LIM/homeobox protein Lhx9 OS=Glandirana rugosa GN=lhx9 PE=2 SV=1
          Length = 379

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           Q+TKRMRTSFKHHQLRT KSYF IN NPDAKDLKQLAQKTGL+KRVLQ
Sbjct: 247 QKTKRMRTSFKHHQLRTTKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 294


>sp|Q8IRC7|AWH_DROME LIM/homeobox protein Awh OS=Drosophila melanogaster GN=Awh PE=1
           SV=1
          Length = 275

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 26  GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           G G H   +TKR+RT+F   QL+ +++ F I+ NPD +DL+++A  TGLSKRV Q
Sbjct: 140 GDGYHK-SKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQ 193


>sp|Q68G74|LHX8_HUMAN LIM/homeobox protein Lhx8 OS=Homo sapiens GN=LHX8 PE=2 SV=2
          Length = 356

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 17  ESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 71
           E+G G S  G+      V+  +  KR RTSF   QL+ M++ F  + NPDA+ L++LA++
Sbjct: 202 ENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAER 261

Query: 72  TGLSKRVLQ 80
           TGLS+RV+Q
Sbjct: 262 TGLSRRVIQ 270


>sp|O35652|LHX8_MOUSE LIM/homeobox protein Lhx8 OS=Mus musculus GN=Lhx8 PE=2 SV=4
          Length = 367

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 17  ESGAGNSSPGS-----GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 71
           E+G G S  G+      V+  +  KR RTSF   QL+ M++ F  + NPDA+ L++LA++
Sbjct: 223 ENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAER 282

Query: 72  TGLSKRVLQ 80
           TGLS+RV+Q
Sbjct: 283 TGLSRRVIQ 291


>sp|Q9R1R0|LHX6_MOUSE LIM/homeobox protein Lhx6 OS=Mus musculus GN=Lhx6 PE=1 SV=2
          Length = 363

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 36  KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           KR RTSF   QL+ M++ F  + NPDA+ L++LA  TGLS+RV+Q
Sbjct: 220 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 264


>sp|Q9UPM6|LHX6_HUMAN LIM/homeobox protein Lhx6 OS=Homo sapiens GN=LHX6 PE=2 SV=2
          Length = 363

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 36  KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           KR RTSF   QL+ M++ F  + NPDA+ L++LA  TGLS+RV+Q
Sbjct: 220 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQ 264


>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus GN=Zfhx3 PE=1 SV=1
          Length = 3726

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 32   HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
             Q+ KR RT     QLR ++ YF+IN +P  + +K++A K+GL ++V++
Sbjct: 2149 QQQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 2197



 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 18   SGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 77
            +  G +  G+G    QR KR+RT+    QL  +   + ++ NP  K L  +A + GL KR
Sbjct: 2633 ASPGENDSGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKR 2692

Query: 78   VLQ 80
            V+Q
Sbjct: 2693 VVQ 2695



 Score = 38.9 bits (89), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 18   SGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 77
            SG G   PG         KR RT   + QL+ +KS FN  + P   + + L    GL KR
Sbjct: 2945 SGDGGDRPGQ--------KRFRTQMTNLQLKVLKSCFNDYRTPTMLECEVLGNDIGLPKR 2996

Query: 78   VLQ 80
            V+Q
Sbjct: 2997 VVQ 2999



 Score = 35.4 bits (80), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 9    SSMESLSYESGAGNSSPGSGVHSHQRTKRM-RTSFKHHQLRTMKSYFNINQNPDAKDLKQ 67
            +S+E L  +S     SP      +  +KR  RT F  +QLR ++ +F+ N  P   + +Q
Sbjct: 2224 TSLEELKIDSRP--PSPEPQKQEYWGSKRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQ 2281

Query: 68   LAQKTGLSKRVL 79
            L+    L  RV+
Sbjct: 2282 LSNLLNLPTRVI 2293


>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens GN=ZFHX3 PE=1 SV=2
          Length = 3703

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 32   HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
             Q+ KR RT     QLR ++ YF+IN +P  + +K++A K+GL ++V++
Sbjct: 2142 QQQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 2190



 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 18   SGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 77
            +  G +  G+G    QR KR+RT+    QL  +   + ++ NP  K L  +A + GL KR
Sbjct: 2624 ASPGENDSGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKR 2683

Query: 78   VLQ 80
            V+Q
Sbjct: 2684 VVQ 2686



 Score = 38.1 bits (87), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 18   SGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKR 77
            SG+   S  SG    Q  KR RT   + QL+ +KS FN  + P   + + L    GL KR
Sbjct: 2931 SGSAGKSGDSGDRPGQ--KRFRTQMTNLQLKVLKSCFNDYRTPTMLECEVLGNDIGLPKR 2988

Query: 78   VLQ 80
            V+Q
Sbjct: 2989 VVQ 2991



 Score = 36.2 bits (82), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 9    SSMESLSYESGAGNSSPGSGVHSHQRTKRM-RTSFKHHQLRTMKSYFNINQNPDAKDLKQ 67
            +S+E L  +S     SP      +  +KR  RT F  +QLR ++ +F+ N  P   + +Q
Sbjct: 2217 TSLEELKIDSRP--PSPEPPKQEYWGSKRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQ 2274

Query: 68   LAQKTGLSKRVL 79
            L+    L  RV+
Sbjct: 2275 LSNLLNLPTRVI 2286


>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
          Length = 3573

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 36/49 (73%)

Query: 32   HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            H + KR RT     QL+ +++YF+IN +P  + ++++A+K+GLS++V++
Sbjct: 2069 HSQFKRPRTRITDDQLKILRAYFDINNSPSEEQIQEMAEKSGLSQKVIK 2117



 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 3    HSGDLSSSMESLSYESGAGNSSPGSGVHSHQ---RTKRMRTSFKHHQLRTMKSYFNINQN 59
            H   +S SM+    +    N S   G +S +   R KR+RT+    QL  +   + ++ N
Sbjct: 2513 HPATVSGSMKRKLDDKEDNNCSEKEGGNSGEDQHRDKRLRTTITPEQLEILYEKYLLDSN 2572

Query: 60   PDAKDLKQLAQKTGLSKRVLQ 80
            P  K L  +A++ GL KRV+Q
Sbjct: 2573 PTRKMLDHIAREVGLKKRVVQ 2593



 Score = 36.2 bits (82), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 36   KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            KR RT   + QL+ +K+ F+  + P  ++ + L  + GL KRV+Q
Sbjct: 2875 KRFRTQMSNLQLKVLKACFSDYRTPTMQECEMLGNEIGLPKRVVQ 2919



 Score = 35.8 bits (81), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 39   RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79
            RT F  +QLR ++ +F+ N  P   +++QL+    L  RV+
Sbjct: 2173 RTRFTDYQLRVLQDFFDTNAYPKDDEIEQLSTVLNLPTRVI 2213


>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1
          Length = 3567

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 36/49 (73%)

Query: 32   HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            H + KR RT     QL+ +++YF+IN +P  + ++++A+K+GLS++V++
Sbjct: 2081 HSQFKRPRTRITDDQLKILRAYFDINNSPSEEQIQEMAEKSGLSQKVIK 2129



 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 27   SGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            SG   H R KR+RT+    QL  +   + ++ NP  K L  +A++ GL KRV+Q
Sbjct: 2553 SGEDQH-RDKRLRTTITPEQLEILYEKYLLDSNPTRKMLDHIAREVGLKKRVVQ 2605



 Score = 36.2 bits (82), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 36   KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            KR RT   + QL+ +K+ F+  + P  ++ + L  + GL KRV+Q
Sbjct: 2885 KRFRTQMSNLQLKVLKACFSDYRTPTMQECEMLGNEIGLPKRVVQ 2929



 Score = 35.8 bits (81), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 39   RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79
            RT F  +QLR ++ +F+ N  P   +++QL+    L  RV+
Sbjct: 2185 RTRFTDYQLRVLQDFFDTNAYPKDDEIEQLSTVLNLPTRVI 2225


>sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musculus GN=Zfhx4 PE=1 SV=1
          Length = 3550

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 36/49 (73%)

Query: 32   HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            H + KR RT     QL+ +++YF+IN +P  + ++++A+K+GLS++V++
Sbjct: 2066 HSQFKRPRTRITDDQLKILRAYFDINNSPSEEQIQEMAEKSGLSQKVVK 2114



 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 27   SGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            SG   H R KR+RT+    QL  +   + ++ NP  K L  +A++ GL KRV+Q
Sbjct: 2535 SGEDQH-RDKRLRTTITPEQLEILYEKYLLDSNPTRKMLDHIAREVGLKKRVVQ 2587



 Score = 36.6 bits (83), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 36   KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            KR RT   + QL+ +K+ F+  + P  ++ + L  + GL KRV+Q
Sbjct: 2866 KRFRTQMSNLQLKVLKACFSDYRTPTMQECEMLGNEIGLPKRVVQ 2910



 Score = 35.8 bits (81), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 39   RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79
            RT F  +QLR ++ +F+ N  P   +++QL+    L  RV+
Sbjct: 2170 RTRFTDYQLRVLQDFFDTNAYPKDDEIEQLSTVLNLPTRVI 2210


>sp|P53405|ISL1_DANRE Insulin gene enhancer protein isl-1 OS=Danio rerio GN=isl1 PE=2
           SV=1
          Length = 349

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 25  PGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           P    H H   ++T R+RT     QL T+++ +N N  PDA   +QL + TGLS RV++
Sbjct: 168 PALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 226


>sp|P53407|ISL2B_DANRE Insulin gene enhancer protein isl-2b OS=Danio rerio GN=isl2b PE=2
           SV=1
          Length = 358

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           ++T R+RT     QL T+++ +N N  PDA   +QL + TGLS RV++
Sbjct: 189 EKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 236


>sp|P53409|ISL3_ONCTS Insulin gene enhancer protein ISL-3 OS=Oncorhynchus tschawytscha
           GN=isl3 PE=2 SV=1
          Length = 363

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           ++T R+RT     QL T+++ +N N  PDA   +QL + TGLS RV++
Sbjct: 189 EKTTRVRTVLNEKQLHTLRTCYNANPRPDALMREQLVEMTGLSPRVIR 236


>sp|P53406|ISL2A_DANRE Insulin gene enhancer protein isl-2a OS=Danio rerio GN=isl2a PE=2
           SV=1
          Length = 359

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           ++T R+RT     QL T+++ +N N  PDA   +QL + TGLS RV++
Sbjct: 189 EKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 236


>sp|P53408|ISL2A_ONCTS Insulin gene enhancer protein ISL-2A OS=Oncorhynchus tschawytscha
           GN=isl2a PE=2 SV=1
          Length = 358

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           ++T R+RT     QL T+++ +N N  PDA   +QL + TGLS RV++
Sbjct: 188 EKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 235


>sp|P50212|ISL2B_ONCTS Insulin gene enhancer protein ISL-2B (Fragment) OS=Oncorhynchus
           tschawytscha GN=isl2b PE=2 SV=1
          Length = 340

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           ++T R+RT     QL T+++ +N N  PDA   +QL + TGLS RV++
Sbjct: 170 EKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 217


>sp|Q9CXV0|ISL2_MOUSE Insulin gene enhancer protein ISL-2 OS=Mus musculus GN=Isl2 PE=1
           SV=2
          Length = 359

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 17  ESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 73
           ++G+G   P    H H   ++T R+RT     QL T+++ +  N  PDA   +QL + TG
Sbjct: 171 DAGSGRQ-PSLRTHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG 229

Query: 74  LSKRVLQ 80
           LS RV++
Sbjct: 230 LSPRVIR 236


>sp|Q96A47|ISL2_HUMAN Insulin gene enhancer protein ISL-2 OS=Homo sapiens GN=ISL2 PE=1
           SV=1
          Length = 359

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 17  ESGAGNSSPGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 73
           ++G+G   P    H H   ++T R+RT     QL T+++ +  N  PDA   +QL + TG
Sbjct: 171 DAGSGRQ-PALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG 229

Query: 74  LSKRVLQ 80
           LS RV++
Sbjct: 230 LSPRVIR 236


>sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A
           PE=2 SV=1
          Length = 382

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 19  GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 78
           GAG  +   G   H+R KR RT     Q R  K+ F ++  P  K  + LA +TGLS RV
Sbjct: 180 GAGKGTAEEG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 238

Query: 79  LQ 80
           +Q
Sbjct: 239 VQ 240


>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1-alpha OS=Mus musculus GN=Lmx1a
           PE=2 SV=1
          Length = 382

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 19  GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 78
           GAG  +   G   H+R KR RT     Q R  K+ F ++  P  K  + LA +TGLS RV
Sbjct: 180 GAGKGASEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 238

Query: 79  LQ 80
           +Q
Sbjct: 239 VQ 240


>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1-alpha OS=Mesocricetus auratus
           GN=LMX1A PE=2 SV=1
          Length = 382

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 19  GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 78
           GAG  +   G   H+R KR RT     Q R  K+ F ++  P  K  + LA +TGLS RV
Sbjct: 180 GAGKGTSEDG-KDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRV 238

Query: 79  LQ 80
           +Q
Sbjct: 239 VQ 240


>sp|P61374|ISL1_RAT Insulin gene enhancer protein ISL-1 OS=Rattus norvegicus GN=Isl1
           PE=2 SV=1
          Length = 349

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 25  PGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           P    H H   ++T R+RT     QL T+++ +  N  PDA   +QL + TGLS RV++
Sbjct: 168 PALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226


>sp|P61372|ISL1_MOUSE Insulin gene enhancer protein ISL-1 OS=Mus musculus GN=Isl1 PE=1
           SV=1
          Length = 349

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 25  PGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           P    H H   ++T R+RT     QL T+++ +  N  PDA   +QL + TGLS RV++
Sbjct: 168 PALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226


>sp|P61373|ISL1_MESAU Insulin gene enhancer protein ISL-1 OS=Mesocricetus auratus GN=ISL1
           PE=2 SV=1
          Length = 349

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 25  PGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           P    H H   ++T R+RT     QL T+++ +  N  PDA   +QL + TGLS RV++
Sbjct: 168 PALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226


>sp|P61371|ISL1_HUMAN Insulin gene enhancer protein ISL-1 OS=Homo sapiens GN=ISL1 PE=1
           SV=1
          Length = 349

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 25  PGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           P    H H   ++T R+RT     QL T+++ +  N  PDA   +QL + TGLS RV++
Sbjct: 168 PALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226


>sp|P50480|ISL2_RAT Insulin gene enhancer protein ISL-2 OS=Rattus norvegicus GN=Isl2
           PE=1 SV=1
          Length = 360

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           ++T R+RT     QL T+++ +  N  PDA   +QL + TGLS RV++
Sbjct: 190 EKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 237


>sp|O15499|GSC2_HUMAN Homeobox protein goosecoid-2 OS=Homo sapiens GN=GSC2 PE=2 SV=1
          Length = 205

 Score = 41.2 bits (95), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 13  SLSYESGAGNSSPGS-GVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 71
           SL   +G   + PG+ G  S +RT+R RT F   QL+ +++ F  NQ PD    ++LA +
Sbjct: 103 SLGAPAGGSGALPGAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGR 162

Query: 72  TGL 74
             L
Sbjct: 163 IRL 165


>sp|P50211|ISL1_CHICK Insulin gene enhancer protein ISL-1 OS=Gallus gallus GN=ISL1 PE=2
           SV=1
          Length = 349

 Score = 40.8 bits (94), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 25  PGSGVHSH---QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           P    H H   ++T R+RT     QL T+++ +  N  PDA   +QL + TGLS RV++
Sbjct: 168 PALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226


>sp|P53410|ISL2_CHICK Insulin gene enhancer protein ISL-2 (Fragment) OS=Gallus gallus
           GN=ISL2 PE=2 SV=1
          Length = 319

 Score = 40.4 bits (93), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 33  QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           ++T R+RT     QL T+++ +  N  PDA   +QL + TGLS RV++
Sbjct: 148 EKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 195


>sp|P28167|ZFH2_DROME Zinc finger protein 2 OS=Drosophila melanogaster GN=zfh2 PE=1 SV=2
          Length = 3005

 Score = 40.4 bits (93), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 5    GD--LSSSMESLSYESGAGNSSP-----GSGVHSHQ---RTKRMRTSFKHHQLRTMKSYF 54
            GD  L+S + S+  +SG   + P      +  +S Q     KR RT     QL+ ++++F
Sbjct: 1757 GDTHLTSGVSSIPVDSGKATAVPPQTQLNANANSQQLASNQKRARTRITDDQLKILRAHF 1816

Query: 55   NINQNPDAKDLKQLAQKTGLSKRVLQ 80
            +IN +P  + + +++QK  L  +V++
Sbjct: 1817 DINNSPSEESIMEMSQKANLPMKVVK 1842



 Score = 34.7 bits (78), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 33   QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            ++ KR+RT+    QL  +   +    NP  K L+++++K  L KRV+Q
Sbjct: 2758 KQNKRLRTTILPEQLNFLYECYQSESNPSRKMLEEISKKVNLKKRVVQ 2805


>sp|Q8MJI9|PROP1_BOVIN Homeobox protein prophet of Pit-1 OS=Bos taurus GN=PROP1 PE=2 SV=1
          Length = 226

 Score = 38.9 bits (89), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 36  KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           +R RT+F   QL  ++S F  NQ PD    + LAQ TGLS+  +Q
Sbjct: 70  RRHRTTFSPAQLEQLESAFGRNQYPDIWARESLAQDTGLSEARIQ 114


>sp|Q9H2C1|LHX5_HUMAN LIM/homeobox protein Lhx5 OS=Homo sapiens GN=LHX5 PE=2 SV=1
          Length = 402

 Score = 38.9 bits (89), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 35  TKR--MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           TKR   RT+ K  QL T+K+ F     P     +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225


>sp|P61376|LHX5_RAT LIM/homeobox protein Lhx5 OS=Rattus norvegicus GN=Lhx5 PE=2 SV=1
          Length = 402

 Score = 38.9 bits (89), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 35  TKR--MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           TKR   RT+ K  QL T+K+ F     P     +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225


>sp|P61375|LHX5_MOUSE LIM/homeobox protein Lhx5 OS=Mus musculus GN=Lhx5 PE=2 SV=1
          Length = 402

 Score = 38.9 bits (89), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 35  TKR--MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           TKR   RT+ K  QL T+K+ F     P     +QLAQ+TGL+ RV+Q
Sbjct: 178 TKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225


>sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sapiens GN=ZFHX2 PE=2 SV=3
          Length = 2572

 Score = 38.9 bits (89), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 34   RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            R KR+RT+    QL  +  ++  + NP  K L  ++++ GL KRV+Q
Sbjct: 1856 RDKRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQ 1902



 Score = 36.2 bits (82), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 36   KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
            +R RT     QL+ MK+ +   + P  ++ + L ++ GL KRV+Q
Sbjct: 2066 RRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQ 2110



 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 39   RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79
            RT F   Q + ++S+F  +  P   ++++LA   GL+ RV+
Sbjct: 1599 RTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVV 1639


>sp|Q5IS89|LHX1_SAIBB LIM/homeobox protein Lhx1 OS=Saimiri boliviensis boliviensis
           GN=LHX1 PE=2 SV=1
          Length = 406

 Score = 38.5 bits (88), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 39  RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           RT+ K  QL T+K+ F     P     +QLAQ+TGL+ RV+Q
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225


>sp|Q5IS44|LHX1_PANTR LIM/homeobox protein Lhx1 OS=Pan troglodytes GN=LHX1 PE=2 SV=1
          Length = 406

 Score = 38.5 bits (88), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 39  RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
           RT+ K  QL T+K+ F     P     +QLAQ+TGL+ RV+Q
Sbjct: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.122    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,096,627
Number of Sequences: 539616
Number of extensions: 899796
Number of successful extensions: 2882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 2628
Number of HSP's gapped (non-prelim): 296
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)