Query psy4349
Match_columns 80
No_of_seqs 144 out of 1121
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 23:18:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.6 5.3E-15 1.8E-19 79.2 6.7 52 29-80 11-62 (80)
2 1wh5_A ZF-HD homeobox family p 99.6 9.9E-15 3.4E-19 78.3 6.5 49 32-80 14-66 (80)
3 2kt0_A Nanog, homeobox protein 99.6 1.5E-14 5.3E-19 77.9 7.1 51 30-80 17-67 (84)
4 2da3_A Alpha-fetoprotein enhan 99.5 7.1E-15 2.4E-19 78.6 5.1 51 30-80 12-62 (80)
5 1wh7_A ZF-HD homeobox family p 99.5 1.7E-14 5.9E-19 77.3 6.0 48 32-80 14-66 (80)
6 2cra_A Homeobox protein HOX-B1 99.5 2.3E-14 7.8E-19 74.9 5.2 49 32-80 4-52 (70)
7 2djn_A Homeobox protein DLX-5; 99.5 3E-14 1E-18 74.5 5.1 49 32-80 4-52 (70)
8 2da2_A Alpha-fetoprotein enhan 99.5 3.5E-14 1.2E-18 74.2 5.2 49 32-80 4-52 (70)
9 1wi3_A DNA-binding protein SAT 99.5 2.5E-14 8.7E-19 74.1 4.5 49 32-80 4-53 (71)
10 2dmu_A Homeobox protein goosec 99.5 3.6E-14 1.2E-18 74.2 5.0 48 33-80 5-52 (70)
11 2da1_A Alpha-fetoprotein enhan 99.5 3.4E-14 1.2E-18 74.2 4.2 49 32-80 4-52 (70)
12 2dms_A Homeobox protein OTX2; 99.5 6.1E-14 2.1E-18 75.0 5.2 49 32-80 4-52 (80)
13 1nk2_P Homeobox protein VND; h 99.5 9.5E-14 3.2E-18 73.8 5.5 50 31-80 5-54 (77)
14 2cue_A Paired box protein PAX6 99.5 8E-14 2.8E-18 74.6 5.1 48 33-80 5-52 (80)
15 2dmq_A LIM/homeobox protein LH 99.5 9.3E-14 3.2E-18 74.2 5.2 49 32-80 4-52 (80)
16 1puf_A HOX-1.7, homeobox prote 99.5 1.4E-13 4.9E-18 73.1 5.9 49 32-80 10-58 (77)
17 2e1o_A Homeobox protein PRH; D 99.5 1.2E-13 4E-18 72.2 5.2 48 33-80 5-52 (70)
18 1fjl_A Paired protein; DNA-bin 99.4 9E-14 3.1E-18 74.5 4.5 50 31-80 14-63 (81)
19 2hdd_A Protein (engrailed home 99.4 7.6E-14 2.6E-18 71.1 3.9 46 35-80 3-48 (61)
20 1bw5_A ISL-1HD, insulin gene e 99.4 1.1E-13 3.8E-18 71.5 4.4 47 34-80 2-48 (66)
21 2vi6_A Homeobox protein nanog; 99.4 7.8E-14 2.7E-18 71.3 3.8 47 34-80 2-48 (62)
22 2h1k_A IPF-1, pancreatic and d 99.4 9.4E-14 3.2E-18 71.2 4.1 46 35-80 3-48 (63)
23 1ig7_A Homeotic protein MSX-1; 99.4 1.5E-13 5.1E-18 69.3 4.3 45 36-80 1-45 (58)
24 2m0c_A Homeobox protein arista 99.4 2.6E-13 8.9E-18 71.6 5.4 49 32-80 6-54 (75)
25 2l7z_A Homeobox protein HOX-A1 99.4 2.5E-13 8.7E-18 71.5 5.3 48 33-80 5-52 (73)
26 3nar_A ZHX1, zinc fingers and 99.4 1.4E-13 4.9E-18 75.9 4.2 49 32-80 22-70 (96)
27 1akh_A Protein (mating-type pr 99.4 1.3E-13 4.3E-18 70.2 3.5 48 33-80 3-50 (61)
28 3a01_A Homeodomain-containing 99.4 4.1E-13 1.4E-17 73.7 5.7 49 32-80 14-62 (93)
29 2r5y_A Homeotic protein sex co 99.4 2.8E-13 9.6E-18 73.6 4.9 49 32-80 25-73 (88)
30 1jgg_A Segmentation protein EV 99.4 2.2E-13 7.4E-18 69.2 4.1 45 36-80 2-46 (60)
31 1zq3_P PRD-4, homeotic bicoid 99.4 2.6E-13 8.7E-18 70.6 4.4 46 35-80 2-47 (68)
32 3rkq_A Homeobox protein NKX-2. 99.4 3E-13 1E-17 68.0 4.3 46 35-80 2-47 (58)
33 2da4_A Hypothetical protein DK 99.4 1.5E-13 5.1E-18 73.5 3.1 49 32-80 5-57 (80)
34 1ftt_A TTF-1 HD, thyroid trans 99.4 4.1E-13 1.4E-17 69.8 4.5 46 35-80 2-47 (68)
35 1ahd_P Antennapedia protein mu 99.4 2.3E-13 8E-18 70.7 3.3 46 35-80 2-47 (68)
36 2k40_A Homeobox expressed in E 99.4 5.2E-13 1.8E-17 69.2 4.3 45 36-80 2-46 (67)
37 1b8i_A Ultrabithorax, protein 99.4 4E-13 1.4E-17 72.0 3.9 48 33-80 18-65 (81)
38 1yz8_P Pituitary homeobox 2; D 99.4 1.8E-13 6.1E-18 71.1 2.0 47 34-80 2-48 (68)
39 1x2n_A Homeobox protein pknox1 99.3 1.7E-12 5.9E-17 68.2 5.2 49 32-80 4-55 (73)
40 2dn0_A Zinc fingers and homeob 99.3 1.3E-12 4.3E-17 69.3 4.5 46 35-80 8-53 (76)
41 2ecc_A Homeobox and leucine zi 99.3 1.1E-12 3.7E-17 69.6 4.2 43 38-80 6-48 (76)
42 1b72_A Protein (homeobox prote 99.3 1.1E-12 3.8E-17 72.4 3.9 48 33-80 32-79 (97)
43 2da5_A Zinc fingers and homeob 99.3 2.9E-12 9.8E-17 67.8 5.2 44 37-80 9-52 (75)
44 2cuf_A FLJ21616 protein; homeo 99.3 2.1E-12 7.2E-17 71.0 4.4 49 32-80 4-67 (95)
45 2ly9_A Zinc fingers and homeob 99.3 3.5E-12 1.2E-16 67.1 5.0 46 35-80 6-51 (74)
46 3a02_A Homeobox protein arista 99.3 1.8E-12 6.2E-17 65.7 3.6 43 38-80 2-44 (60)
47 2hi3_A Homeodomain-only protei 99.3 3.4E-12 1.2E-16 67.1 4.5 45 36-80 3-48 (73)
48 1e3o_C Octamer-binding transcr 99.3 5.4E-13 1.9E-17 79.5 1.5 48 33-80 99-146 (160)
49 2xsd_C POU domain, class 3, tr 99.3 2.3E-12 7.7E-17 77.2 3.8 49 32-80 96-144 (164)
50 1uhs_A HOP, homeodomain only p 99.3 4E-12 1.4E-16 66.6 4.2 45 36-80 2-47 (72)
51 1au7_A Protein PIT-1, GHF-1; c 99.3 3.1E-12 1.1E-16 75.3 4.1 49 32-80 84-132 (146)
52 1du6_A PBX1, homeobox protein 99.3 3.4E-12 1.2E-16 65.4 3.6 46 35-80 3-51 (64)
53 3d1n_I POU domain, class 6, tr 99.3 7E-12 2.4E-16 74.1 5.1 49 32-80 90-138 (151)
54 2dmn_A Homeobox protein TGIF2L 99.3 1.1E-11 3.7E-16 66.7 5.3 49 32-80 4-55 (83)
55 1puf_B PRE-B-cell leukemia tra 99.2 7.7E-12 2.6E-16 65.7 4.3 45 36-80 2-49 (73)
56 2da6_A Hepatocyte nuclear fact 99.2 1.2E-11 4E-16 68.8 5.0 41 32-72 3-43 (102)
57 3a03_A T-cell leukemia homeobo 99.2 6.3E-12 2.2E-16 63.0 3.5 41 40-80 2-42 (56)
58 1lfb_A Liver transcription fac 99.2 8.3E-12 2.9E-16 69.2 3.5 49 32-80 6-75 (99)
59 1mnm_C Protein (MAT alpha-2 tr 99.2 2E-11 6.9E-16 66.1 4.6 48 33-80 25-75 (87)
60 1b72_B Protein (PBX1); homeodo 99.2 1.7E-11 5.9E-16 66.3 4.1 45 36-80 2-49 (87)
61 2d5v_A Hepatocyte nuclear fact 99.2 1.7E-11 5.8E-16 73.2 4.0 49 32-80 94-142 (164)
62 2dmp_A Zinc fingers and homeob 99.2 7.1E-11 2.4E-15 64.3 6.0 41 40-80 18-58 (89)
63 1k61_A Mating-type protein alp 99.2 3.2E-11 1.1E-15 61.0 4.1 42 39-80 2-46 (60)
64 3l1p_A POU domain, class 5, tr 99.2 3.2E-11 1.1E-15 71.5 4.1 48 33-80 94-141 (155)
65 1le8_B Mating-type protein alp 99.1 8.3E-11 2.8E-15 63.2 4.1 44 37-80 4-50 (83)
66 2ecb_A Zinc fingers and homeob 99.1 2E-10 6.9E-15 62.5 5.6 40 41-80 17-56 (89)
67 2cqx_A LAG1 longevity assuranc 99.0 4.6E-11 1.6E-15 62.7 1.1 45 36-80 9-54 (72)
68 3nau_A Zinc fingers and homeob 99.0 1.6E-10 5.6E-15 59.5 3.1 38 43-80 12-49 (66)
69 2e19_A Transcription factor 8; 99.0 4.4E-10 1.5E-14 57.7 3.9 41 40-80 8-48 (64)
70 2l9r_A Homeobox protein NKX-3. 99.0 6.4E-10 2.2E-14 57.9 3.7 41 40-80 9-49 (69)
71 2h8r_A Hepatocyte nuclear fact 98.9 5.3E-10 1.8E-14 69.5 3.6 43 31-73 138-180 (221)
72 1ic8_A Hepatocyte nuclear fact 98.9 2.3E-10 7.8E-15 70.1 1.0 42 32-73 112-153 (194)
73 1x2m_A LAG1 longevity assuranc 98.8 4.1E-09 1.4E-13 54.1 2.8 36 45-80 10-46 (64)
74 3k2a_A Homeobox protein MEIS2; 98.8 6.1E-09 2.1E-13 53.8 3.5 41 40-80 3-46 (67)
75 2da7_A Zinc finger homeobox pr 98.5 6.2E-08 2.1E-12 50.3 3.1 37 44-80 14-50 (71)
76 1mh3_A Maltose binding-A1 home 98.4 1.2E-07 4.1E-12 62.3 3.3 45 36-80 366-410 (421)
77 2lk2_A Homeobox protein TGIF1; 98.2 9.2E-07 3.2E-11 47.9 3.1 41 40-80 10-53 (89)
78 2rgt_A Fusion of LIM/homeobox 92.5 0.001 3.6E-08 39.2 -5.9 30 33-62 134-163 (169)
79 2elh_A CG11849-PA, LD40883P; s 69.6 8.9 0.0003 19.5 3.9 39 36-79 17-55 (87)
80 2ys9_A Homeobox and leucine zi 65.0 3.7 0.00013 20.9 1.7 33 48-80 19-51 (70)
81 1hlv_A CENP-B, major centromer 64.9 8.9 0.0003 20.7 3.5 39 38-79 4-42 (131)
82 1iuf_A Centromere ABP1 protein 61.3 14 0.00046 20.8 3.9 41 36-79 6-53 (144)
83 2glo_A Brinker CG9653-PA; prot 55.0 11 0.00036 17.7 2.3 40 39-79 3-42 (59)
84 3hug_A RNA polymerase sigma fa 53.8 8.4 0.00029 19.7 2.0 35 41-80 37-71 (92)
85 1p4w_A RCSB; solution structur 52.3 15 0.00051 19.4 2.9 35 39-79 32-66 (99)
86 3i5g_B Myosin regulatory light 51.6 29 0.00099 19.2 5.4 39 38-76 6-49 (153)
87 1ku3_A Sigma factor SIGA; heli 51.6 10 0.00035 18.4 2.0 38 41-79 10-47 (73)
88 2o8x_A Probable RNA polymerase 49.8 11 0.00039 17.7 2.0 34 41-79 15-48 (70)
89 2p7v_B Sigma-70, RNA polymeras 49.5 10 0.00035 18.1 1.8 38 41-79 5-42 (68)
90 3ulq_B Transcriptional regulat 45.1 15 0.0005 19.0 2.1 37 38-80 26-62 (90)
91 1tc3_C Protein (TC3 transposas 42.7 21 0.00072 15.0 3.2 34 41-79 5-38 (51)
92 1tty_A Sigma-A, RNA polymerase 41.7 18 0.0006 18.3 2.0 38 41-79 18-55 (87)
93 1je8_A Nitrate/nitrite respons 39.1 17 0.00059 18.1 1.7 35 39-79 19-53 (82)
94 3c57_A Two component transcrip 38.6 20 0.00068 18.5 2.0 34 40-79 26-59 (95)
95 3i9v_2 NADH-quinone oxidoreduc 37.3 32 0.0011 20.3 2.9 32 48-79 29-60 (181)
96 2rnj_A Response regulator prot 34.5 23 0.0008 17.9 1.8 34 40-79 28-61 (91)
97 3mzy_A RNA polymerase sigma-H 34.5 23 0.00077 19.3 1.9 17 63-79 125-141 (164)
98 1fse_A GERE; helix-turn-helix 34.3 24 0.00084 16.6 1.8 35 39-79 9-43 (74)
99 1jko_C HIN recombinase, DNA-in 32.1 33 0.0011 14.6 2.0 33 42-79 6-38 (52)
100 1s7o_A Hypothetical UPF0122 pr 31.3 32 0.0011 18.5 2.1 34 41-79 22-55 (113)
101 4h62_V Mediator of RNA polymer 30.3 29 0.001 14.2 1.3 14 39-52 6-19 (31)
102 2lhi_A Calmodulin, serine/thre 29.9 49 0.0017 18.7 2.8 38 39-76 2-44 (176)
103 1xsv_A Hypothetical UPF0122 pr 29.3 34 0.0012 18.3 2.0 34 41-79 25-58 (113)
104 1x3u_A Transcriptional regulat 26.7 27 0.00091 16.8 1.2 32 42-79 17-48 (79)
105 2gqb_A Conserved hypothetical 26.7 52 0.0018 18.6 2.4 18 59-76 80-97 (130)
106 3i5g_C Myosin catalytic light 26.5 66 0.0022 17.8 2.9 36 41-76 2-44 (159)
107 2jpc_A SSRB; DNA binding prote 26.4 15 0.00051 16.9 0.1 14 66-79 17-30 (61)
108 1rp3_A RNA polymerase sigma fa 25.8 40 0.0014 19.5 2.0 33 42-79 188-220 (239)
109 1or7_A Sigma-24, RNA polymeras 25.3 43 0.0015 18.8 2.0 16 64-79 158-173 (194)
110 2x4h_A Hypothetical protein SS 24.7 32 0.0011 18.5 1.3 39 41-79 10-48 (139)
111 1fi6_A EH domain protein REPS1 24.4 71 0.0024 15.8 2.6 35 42-76 3-42 (92)
112 2d1h_A ST1889, 109AA long hypo 24.4 56 0.0019 16.3 2.2 36 41-79 18-53 (109)
113 3h0d_A CTSR; protein DNA compl 23.6 32 0.0011 20.1 1.2 17 63-79 25-41 (155)
114 1l3l_A Transcriptional activat 23.5 52 0.0018 19.6 2.2 36 39-80 171-206 (234)
115 2jt1_A PEFI protein; solution 23.2 28 0.00095 17.6 0.8 20 58-79 22-41 (77)
116 3t72_q RNA polymerase sigma fa 22.7 61 0.0021 17.0 2.2 39 41-80 19-57 (99)
117 3szt_A QCSR, quorum-sensing co 22.5 51 0.0017 19.8 2.0 35 40-80 174-208 (237)
118 2x48_A CAG38821; archeal virus 22.5 64 0.0022 14.3 2.2 31 44-79 18-48 (55)
119 1rzs_A Antirepressor, regulato 21.7 33 0.0011 16.1 0.9 15 64-78 12-26 (61)
120 2q0o_A Probable transcriptiona 21.3 55 0.0019 19.5 2.0 36 39-80 173-208 (236)
121 1qgp_A Protein (double strande 20.8 32 0.0011 17.2 0.7 16 64-79 33-48 (77)
122 3o48_A Mitochondria fission 1 20.5 1.3E+02 0.0044 17.0 4.0 33 40-72 16-50 (134)
123 1qbj_A Protein (double-strande 20.4 32 0.0011 17.5 0.7 16 64-79 29-44 (81)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.3e-15 Score=79.21 Aligned_cols=52 Identities=25% Similarity=0.320 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 29 VHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 29 ~~~~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+....+.++.||.||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK 62 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHee
Confidence 3445677889999999999999999999999999999999999999999885
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.56 E-value=9.9e-15 Score=78.28 Aligned_cols=49 Identities=29% Similarity=0.377 Sum_probs=45.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNI----NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~----~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.+|.||.||..|+..|+..|+. ++||+..++.+||..|+|++.+||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vk 66 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLK 66 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCccccc
Confidence 4567889999999999999999999 999999999999999999999885
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=77.94 Aligned_cols=51 Identities=18% Similarity=0.301 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 30 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 30 ~~~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
....+.++.||.|+..|+..|+..|..++||+...+..||..+||++.+|+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 67 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK 67 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 445667889999999999999999999999999999999999999999885
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=7.1e-15 Score=78.56 Aligned_cols=51 Identities=37% Similarity=0.589 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 30 HSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 30 ~~~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.+.+|.||.||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~ 62 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhH
Confidence 345667889999999999999999999999999999999999999999885
No 5
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.54 E-value=1.7e-14 Score=77.34 Aligned_cols=48 Identities=33% Similarity=0.442 Sum_probs=44.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNI-----NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.+|.||.||..|+..|+ .|.. ++||+..++.+||..|+|++.+||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVk 66 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccc
Confidence 45678899999999999999 7999 999999999999999999999885
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.3e-14 Score=74.94 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=45.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.++.|+.||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhh
Confidence 4456789999999999999999999999999999999999999999885
No 7
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=74.51 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=45.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.++.|+.||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4456789999999999999999999999999999999999999999885
No 8
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=74.16 Aligned_cols=49 Identities=29% Similarity=0.520 Sum_probs=45.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.++.||.||..|+..|+..|..++||+..++..||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIV 52 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhH
Confidence 4557889999999999999999999999999999999999999999884
No 9
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=2.5e-14 Score=74.05 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=45.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNI-NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+.++|.||.|+.+|+..|+..|+. ++||+...|..||.++||++.+||
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~Iq 53 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3467889999999999999999999 999999999999999999998875
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.6e-14 Score=74.16 Aligned_cols=48 Identities=29% Similarity=0.462 Sum_probs=44.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
...++.|+.||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHee
Confidence 446788999999999999999999999999999999999999999885
No 11
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.48 E-value=3.4e-14 Score=74.23 Aligned_cols=49 Identities=37% Similarity=0.728 Sum_probs=45.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.++.||.||..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4456889999999999999999999999999999999999999999884
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=6.1e-14 Score=75.02 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=45.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.++.|+.||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhh
Confidence 4567889999999999999999999999999999999999999999884
No 13
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.47 E-value=9.5e-14 Score=73.81 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=46.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 31 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 31 ~~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+.+.++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 34567888999999999999999999999999999999999999999885
No 14
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=8e-14 Score=74.57 Aligned_cols=48 Identities=29% Similarity=0.427 Sum_probs=45.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
...++.||.||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 456789999999999999999999999999999999999999999885
No 15
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.3e-14 Score=74.23 Aligned_cols=49 Identities=86% Similarity=1.152 Sum_probs=45.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.+|.||.||..|+..|+..|..++||+..++..||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhh
Confidence 3456789999999999999999999999999999999999999999885
No 16
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.46 E-value=1.4e-13 Score=73.10 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=45.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.++.++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 58 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 4456789999999999999999999999999999999999999999885
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=1.2e-13 Score=72.21 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=44.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
...++.|+.||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 52 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhh
Confidence 345678999999999999999999999999999999999999999885
No 18
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.45 E-value=9e-14 Score=74.51 Aligned_cols=50 Identities=32% Similarity=0.488 Sum_probs=44.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 31 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 31 ~~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..++.++.||.|+..|+..|+..|..++||+...+..||..+||++.+|+
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 63 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 34567889999999999999999999999999999999999999999884
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.45 E-value=7.6e-14 Score=71.13 Aligned_cols=46 Identities=33% Similarity=0.466 Sum_probs=40.9
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 35 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 35 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.++.||.||..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 5778999999999999999999999999999999999999999885
No 20
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.44 E-value=1.1e-13 Score=71.50 Aligned_cols=47 Identities=40% Similarity=0.629 Sum_probs=44.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 34 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 34 ~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
++++.||.||..|+..|+..|..++||+..++..||..+||++.+|+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 46789999999999999999999999999999999999999999874
No 21
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.44 E-value=7.8e-14 Score=71.31 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=39.9
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 34 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 34 ~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+.++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 35778999999999999999999999999999999999999999874
No 22
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.44 E-value=9.4e-14 Score=71.23 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=42.5
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 35 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 35 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.++.|+.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 5778999999999999999999999999999999999999999885
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.5e-13 Score=69.32 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=42.8
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 468999999999999999999999999999999999999999885
No 24
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=71.56 Aligned_cols=49 Identities=31% Similarity=0.463 Sum_probs=45.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.++.++.||.|+..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 54 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3456788999999999999999999999999999999999999999874
No 25
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.43 E-value=2.5e-13 Score=71.49 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=45.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+.++.|+.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 52 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHH
Confidence 456788999999999999999999999999999999999999999885
No 26
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=75.90 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=42.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
....++.|+.||..|+..|+..|..++||+..++.+||..+||++.+||
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 70 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHee
Confidence 3445678999999999999999999999999999999999999999885
No 27
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.42 E-value=1.3e-13 Score=70.23 Aligned_cols=48 Identities=15% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~ 50 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVR 50 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 456788999999999999999999999999999999999999999884
No 28
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.42 E-value=4.1e-13 Score=73.72 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=45.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+.+.++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVK 62 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 4557789999999999999999999999999999999999999999885
No 29
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.41 E-value=2.8e-13 Score=73.61 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=41.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 73 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 73 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhh
Confidence 4456789999999999999999999999999999999999999999885
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.41 E-value=2.2e-13 Score=69.20 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=42.3
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 578999999999999999999999999999999999999999874
No 31
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.41 E-value=2.6e-13 Score=70.57 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=43.7
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 35 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 35 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+++.||.||..|+..|+..|..++||+...+..||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 47 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 4778999999999999999999999999999999999999999874
No 32
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=68.01 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=43.3
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 35 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 35 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+++.|+.|+..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHH
Confidence 3678999999999999999999999999999999999999999885
No 33
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=73.50 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=45.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNIN----QNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~----~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.++.++.||.||..|+..|+..|+.+ +||+..++.+||..+||++.+|+
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~ 57 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVR 57 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhh
Confidence 45578899999999999999999999 99999999999999999999885
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.39 E-value=4.1e-13 Score=69.80 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=43.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 35 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 35 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhH
Confidence 4678999999999999999999999999999999999999999874
No 35
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.39 E-value=2.3e-13 Score=70.74 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=43.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 35 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 35 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhh
Confidence 4678999999999999999999999999999999999999999885
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=69.16 Aligned_cols=45 Identities=33% Similarity=0.514 Sum_probs=43.0
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
++.|+.||..|+..|+..|..++||+...+..||..+||++.+|+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQ 46 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhh
Confidence 678999999999999999999999999999999999999999874
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.37 E-value=4e-13 Score=72.02 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=40.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
...++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 65 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 346778999999999999999999999999999999999999999885
No 38
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.36 E-value=1.8e-13 Score=71.13 Aligned_cols=47 Identities=28% Similarity=0.461 Sum_probs=44.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 34 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 34 ~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+.++.||.||..|+..|+..|..++||+...+..||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 48 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 45789999999999999999999999999999999999999999884
No 39
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=1.7e-12 Score=68.18 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=44.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||+
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~ 55 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 55 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 4456788999999999999999976 999999999999999999999884
No 40
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=69.26 Aligned_cols=46 Identities=30% Similarity=0.456 Sum_probs=42.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 35 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 35 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+.+.|+.||..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 53 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhh
Confidence 3446899999999999999999999999999999999999999885
No 41
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.1e-12 Score=69.60 Aligned_cols=43 Identities=28% Similarity=0.317 Sum_probs=40.6
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 38 MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 38 ~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.|+.||..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIk 48 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 4567999999999999999999999999999999999999985
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=1.1e-12 Score=72.40 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=41.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
...++.||.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 79 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhH
Confidence 456788999999999999999999999999999999999999999885
No 43
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.9e-12 Score=67.76 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=41.1
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 37 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 37 r~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+.|+.||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREID 52 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 45678999999999999999999999999999999999999885
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=2.1e-12 Score=71.03 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=45.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------CCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG---------------LSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~---------------l~~~~Vk 80 (80)
..+.+|.|+.|+..|+..|+..|+.++||+...+.+||..++ |++.+|+
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~ 67 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 67 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHH
Confidence 456788999999999999999999999999999999999999 9998874
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.31 E-value=3.5e-12 Score=67.11 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=43.4
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 35 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 35 ~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.++.|+.||..|+..|+..|..++||+..++.+||..+||++.+||
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 51 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIK 51 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHee
Confidence 4678999999999999999999999999999999999999999885
No 46
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.30 E-value=1.8e-12 Score=65.73 Aligned_cols=43 Identities=28% Similarity=0.432 Sum_probs=38.8
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 38 MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 38 ~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.|+.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 5899999999999999999999999999999999999999874
No 47
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.29 E-value=3.4e-12 Score=67.10 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=42.2
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 36 KRMRTSFKHHQLRTMKSYFNI-NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+.||.||..|+..|+..|.. ++||+...+.+||..+||++.+|+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~ 48 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 48 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 467899999999999999995 999999999999999999999885
No 48
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.29 E-value=5.4e-13 Score=79.54 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=41.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+++|.||.|+..|+..|+..|..++||+...+..||..+||++.+|+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 146 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 146 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhh
Confidence 467889999999999999999999999999999999999999999885
No 49
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.28 E-value=2.3e-12 Score=77.17 Aligned_cols=49 Identities=27% Similarity=0.363 Sum_probs=38.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+++|.||.|+..|+..|+..|..++||+...+.+||..++|++.+|+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 144 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhh
Confidence 4567889999999999999999999999999999999999999999885
No 50
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=4e-12 Score=66.64 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=42.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 36 KRMRTSFKHHQLRTMKSYFNI-NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F~~-~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+.|+.|+..|+..|+..|.. ++||+...+..||..+||++.+|+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 357899999999999999996 999999999999999999999885
No 51
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.28 E-value=3.1e-12 Score=75.28 Aligned_cols=49 Identities=18% Similarity=0.428 Sum_probs=42.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+++|.||.||..|+..|+..|..++||+...+..||..+||++.+|+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhch
Confidence 4566788999999999999999999999999999999999999999885
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=3.4e-12 Score=65.44 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=43.3
Q ss_pred CCCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 35 TKRMRTSFKHHQLRTMKSYF---NINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 35 ~rr~Rt~~t~~ql~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.++.|+.|+..|+..|+..| ..++||+..++..||..+||++.||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~ 51 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 51 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 56789999999999999999 99999999999999999999999884
No 53
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.26 E-value=7e-12 Score=74.05 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=45.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+.+++|.||.|+..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 138 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVR 138 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhH
Confidence 4567789999999999999999999999999999999999999999885
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=66.73 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=44.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.||+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~ 55 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQIS 55 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3456778999999999999999987 699999999999999999999884
No 55
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.25 E-value=7.7e-12 Score=65.67 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=42.7
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 36 KRMRTSFKHHQLRTMKSYF---NINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
++.|+.|+..|+..|+..| ..++||+..++..||..+||++.+|+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~ 49 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 6789999999999999999 99999999999999999999999874
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=68.84 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=38.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHh
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKT 72 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l 72 (80)
.++.||.|+.|+..|+..|+..|+.++||+..+|++||..+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999
No 57
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.24 E-value=6.3e-12 Score=62.96 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=37.9
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 40 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
|.||..|+..|+..|..++||+...+.+||..+||++.+|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhh
Confidence 68999999999999999999999999999999999999885
No 58
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.21 E-value=8.3e-12 Score=69.24 Aligned_cols=49 Identities=12% Similarity=0.283 Sum_probs=39.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------hC---CCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK------------------TG---LSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~------------------l~---l~~~~Vk 80 (80)
.++.+|.|+.|+..|+..|+..|+.++||+...|.+||.. || |++.+|+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~ 75 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 75 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceee
Confidence 3566789999999999999999999999999999999999 88 9888774
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.20 E-value=2e-11 Score=66.07 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=44.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|+
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~ 75 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 75 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 345667999999999999999999 999999999999999999999874
No 60
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.19 E-value=1.7e-11 Score=66.26 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=42.1
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 36 KRMRTSFKHHQLRTMKSYF---NINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F---~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
||.|+.|+..|+..|+..| ..++||+..++..||..+||++.+|+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~ 49 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 6789999999999999999 89999999999999999999999884
No 61
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.18 E-value=1.7e-11 Score=73.17 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=41.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+.+|.||.|+..|+..|+..|+.++||+...+..||..+||++.+|+
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~ 142 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 142 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 4456889999999999999999999999999999999999999999885
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=7.1e-11 Score=64.26 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=38.8
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 40 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..||..|+..|+..|..++||+..++.+||..++|++.+|+
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 58 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREID 58 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhcc
Confidence 35999999999999999999999999999999999999885
No 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.17 E-value=3.2e-11 Score=61.02 Aligned_cols=42 Identities=29% Similarity=0.479 Sum_probs=40.2
Q ss_pred CCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 39 RTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 39 Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~ 46 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 689999999999999999 999999999999999999999874
No 64
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.15 E-value=3.2e-11 Score=71.55 Aligned_cols=48 Identities=27% Similarity=0.463 Sum_probs=44.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+++|.||.|+..|+..|+..|..++||+...+.+||..+||++.+||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~ 141 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhhee
Confidence 456778999999999999999999999999999999999999999885
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.10 E-value=8.3e-11 Score=63.17 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=40.4
Q ss_pred CCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 37 RMRTSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 37 r~Rt~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.||+
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~ 50 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 50 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcc
Confidence 45667999999999999999 999999999999999999999874
No 66
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.10 E-value=2e-10 Score=62.51 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.||..|+..|+..|..++||+..+|.+||..+||++.|||
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVk 56 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCe
Confidence 8999999999999999999999999999999999999985
No 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.03 E-value=4.6e-11 Score=62.72 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=40.7
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 36 KRMRTSFKHHQLRTMKSYF-NINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F-~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+.|..++..|+..||..| ..++||+...+.+||..+||++.+||
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVq 54 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 3456678888999999999 99999999999999999999999885
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.03 E-value=1.6e-10 Score=59.51 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 43 KHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 43 t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
|..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVk 49 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIK 49 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 68999999999999999999999999999999999885
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=4.4e-10 Score=57.70 Aligned_cols=41 Identities=24% Similarity=0.483 Sum_probs=37.9
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 40 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..++..|+..|+..|..++||+..++.+||..+||++.+||
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVq 48 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcC
Confidence 34568999999999999999999999999999999999885
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.96 E-value=6.4e-10 Score=57.91 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=38.9
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 40 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+|..|+..||..|..++||+...|.+||..+||++.+||
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVq 49 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 49 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhhee
Confidence 47899999999999999999999999999999999999885
No 71
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.94 E-value=5.3e-10 Score=69.51 Aligned_cols=43 Identities=12% Similarity=0.320 Sum_probs=37.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC
Q psy4349 31 SHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 73 (80)
Q Consensus 31 ~~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~ 73 (80)
..++.||.|+.|+..|+..|+..|+.++||+..+|++||..+|
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 3456788999999999999999999999999999999999987
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.91 E-value=2.3e-10 Score=70.09 Aligned_cols=42 Identities=12% Similarity=0.282 Sum_probs=36.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC
Q psy4349 32 HQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTG 73 (80)
Q Consensus 32 ~~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~ 73 (80)
.++.||.|+.|+..|+..|+..|+.++||+...|.+||..++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~ 153 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECN 153 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 356788999999999999999999999999999999999999
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.77 E-value=4.1e-09 Score=54.08 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=33.4
Q ss_pred HHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 45 HQLRTMKSYF-NINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 45 ~ql~~Le~~F-~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.|+..||..| ..++||+...+.+||..|+|+++|||
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVk 46 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 4799999999 67999999999999999999999985
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.77 E-value=6.1e-09 Score=53.75 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=36.6
Q ss_pred CcCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 40 TSFKHHQLRTMKSYFN---INQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~---~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..|+..|+..|+..|. .++||+..++.+||..+||++.||+
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~ 46 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVN 46 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 3799999999999999 9999999999999999999999884
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=6.2e-08 Score=50.29 Aligned_cols=37 Identities=19% Similarity=0.596 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 44 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 44 ~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..|+..|+..|..|++|+..++..||..+||+..+||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4689999999999999999999999999999998875
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.44 E-value=1.2e-07 Score=62.28 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=42.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
++.++.|+..|+..|+..|+.++||+..+|.+||.++||+++|||
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~ 410 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 410 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 356789999999999999999999999999999999999999985
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.22 E-value=9.2e-07 Score=47.93 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=37.9
Q ss_pred CcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccccC
Q psy4349 40 TSFKHHQLRTMKSYFNI---NQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~~---~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..|+..+...|+..|.. ++||+..++.+||..+||++.||+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~ 53 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVC 53 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 46889999999999987 999999999999999999999884
No 78
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=92.49 E-value=0.001 Score=39.22 Aligned_cols=30 Identities=7% Similarity=-0.138 Sum_probs=21.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCH
Q psy4349 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDA 62 (80)
Q Consensus 33 ~~~rr~Rt~~t~~ql~~Le~~F~~~~~p~~ 62 (80)
...+|+||.|+..|+..|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456789999999999999999999999864
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=69.59 E-value=8.9 Score=19.54 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=24.9
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
++.+..|+.++.......+... . ...++|..+|++...|
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl 55 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTL 55 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHH
Confidence 3456688888865555555432 2 3457899999986543
No 80
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.01 E-value=3.7 Score=20.90 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=28.3
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 48 RTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 48 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..|+..|...+.+.-.....|+.+..|+..|||
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvk 51 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVL 51 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHH
Confidence 568899999999988888999999999887764
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=64.90 E-value=8.9 Score=20.73 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=27.3
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 38 MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 38 ~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.|..||.++...+-..+..+.... ..++|..+|++...|
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl 42 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTL 42 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHH
Confidence 567899999888777775554443 236788899886543
No 82
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=61.28 E-value=14 Score=20.76 Aligned_cols=41 Identities=22% Similarity=0.471 Sum_probs=28.2
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHH----Hh--CCCcccc
Q psy4349 36 KRMRTSFKHHQLRTMKSYF-NINQNPDAKDLKQLAQ----KT--GLSKRVL 79 (80)
Q Consensus 36 rr~Rt~~t~~ql~~Le~~F-~~~~~p~~~~r~~La~----~l--~l~~~~V 79 (80)
++.|..+|..|...+-..+ +.++-... .+||. .+ +++...|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q---~~la~wa~~~f~~~is~sti 53 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQ---QDLIEWFREKFGKDISQPSV 53 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCH---HHHHHHHHHHHSSCCSSSST
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHCCCCcHHHH
Confidence 5678999999999999888 56665533 34455 66 5555443
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=54.99 E-value=11 Score=17.67 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 39 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
|..|+.+........+... ........++|..+|++...|
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl 42 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQI 42 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHH
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHH
Confidence 3468888776664444333 221112558899999976544
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=53.77 E-value=8.4 Score=19.68 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.++..+...|...|... ..-.++|..+|++...|+
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~ 71 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVK 71 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHH
Confidence 34555555555433222 245588999999887653
No 85
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=52.34 E-value=15 Score=19.40 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=25.7
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 39 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
...++..+...|...++-. .-.++|..+++++..|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV 66 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTI 66 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHH
Confidence 4578999999987755322 3368899999988765
No 86
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=51.62 E-value=29 Score=19.19 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCc
Q psy4349 38 MRTSFKHHQLRTMKSYFNI-----NQNPDAKDLKQLAQKTGLSK 76 (80)
Q Consensus 38 ~Rt~~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~ 76 (80)
.|..+|..|+..|...|.. +-+.+..+-..+...+|...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 3567999999999999864 44788888777777777654
No 87
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=51.57 E-value=10 Score=18.40 Aligned_cols=38 Identities=8% Similarity=0.195 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.+++.+...+...|...-. ....-.++|..+|++...|
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV 47 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERI 47 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHH
Confidence 4678888888877742100 0113458899999998765
No 88
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=49.78 E-value=11 Score=17.71 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.+++.+...+...|... ..-.++|..+|++...|
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv 48 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTI 48 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHH
Confidence 46677777777654333 24458899999988665
No 89
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.51 E-value=10 Score=18.11 Aligned_cols=38 Identities=11% Similarity=0.344 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.+++.+...+...|..+.+ ....-.++|..+|++...|
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV 42 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERI 42 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHH
Confidence 4677787888777632111 1123457899999998765
No 90
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=45.06 E-value=15 Score=18.97 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=25.5
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 38 MRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 38 ~Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
....+|..+...|.-..+-. ...++|..++++...|+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~ 62 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIE 62 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 45578999999987765222 45688999999887663
No 91
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=42.75 E-value=21 Score=15.04 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.++..+...+...+... + ...++|..+|++...|
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv 38 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCI 38 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHH
Confidence 45666665554444332 2 3557899999987654
No 92
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=41.66 E-value=18 Score=18.28 Aligned_cols=38 Identities=8% Similarity=0.265 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.+++.+...+...|...-- ....-.++|..+|++...|
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV 55 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERI 55 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHH
Confidence 4667777777776642100 1124457899999998765
No 93
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.07 E-value=17 Score=18.15 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=25.2
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 39 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
-..++..+...|...++- ..-.++|..+|++...|
T Consensus 19 ~~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV 53 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQG------LPNKMIARRLDITESTV 53 (82)
T ss_dssp GGGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHH
T ss_pred HccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHH
Confidence 356889998888774322 24568899999988765
No 94
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.62 E-value=20 Score=18.47 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=24.1
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 40 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
..++..+...|...++-. ...++|..+|++...|
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV 59 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTV 59 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHH
Confidence 367888888888753322 3468899999988765
No 95
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=37.27 E-value=32 Score=20.33 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 48 RTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 48 ~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
..|...=+..-|.+......+|..|+++...|
T Consensus 29 ~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 29 PLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHH
Confidence 33333333447999999999999999998765
No 96
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.54 E-value=23 Score=17.88 Aligned_cols=34 Identities=3% Similarity=0.089 Sum_probs=23.5
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 40 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
..++..+...|...++-. .-.++|..+|++...|
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV 61 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTV 61 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHH
Confidence 467888888887744332 2347888889887665
No 97
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.46 E-value=23 Score=19.27 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=13.3
Q ss_pred HHHHHHHHHhCCCcccc
Q psy4349 63 KDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 63 ~~r~~La~~l~l~~~~V 79 (80)
..-.++|..+|++...|
T Consensus 125 ~s~~EIA~~lgis~~tV 141 (164)
T 3mzy_A 125 YSYREIATILSKNLKSI 141 (164)
T ss_dssp CCHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 35568899999998766
No 98
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.31 E-value=24 Score=16.65 Aligned_cols=35 Identities=9% Similarity=0.207 Sum_probs=24.1
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 39 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
-..+++.+...|...++ .+ .-.++|..+|++...|
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV 43 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTV 43 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHH
Confidence 34678888888877422 22 4457899999987654
No 99
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=32.07 E-value=33 Score=14.62 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 42 FKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 42 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
++..+...+...+... ....++|..+|++...|
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv 38 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTL 38 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHH
Confidence 3444444444444332 23457899999887543
No 100
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=31.30 E-value=32 Score=18.48 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.+++.+...+...|.... .-.++|..+|++...|
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV 55 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAV 55 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHH
Confidence 466777777766544332 4468899999988665
No 101
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=30.26 E-value=29 Score=14.17 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=8.3
Q ss_pred CCcCCHHHHHHHHH
Q psy4349 39 RTSFKHHQLRTMKS 52 (80)
Q Consensus 39 Rt~~t~~ql~~Le~ 52 (80)
-|+|...|+++|..
T Consensus 6 vtrfdekqieelld 19 (31)
T 4h62_V 6 VTRFDEKQIEELLD 19 (31)
T ss_dssp ----CHHHHHHHHH
T ss_pred cccccHHHHHHHHH
Confidence 36889999988764
No 102
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.90 E-value=49 Score=18.66 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=27.1
Q ss_pred CCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCc
Q psy4349 39 RTSFKHHQLRTMKSYFNI-----NQNPDAKDLKQLAQKTGLSK 76 (80)
Q Consensus 39 Rt~~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~ 76 (80)
++.+|..|+..|+..|.. +-+.+..+-..+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 357888888889888853 33677777777677776654
No 103
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.31 E-value=34 Score=18.29 Aligned_cols=34 Identities=12% Similarity=0.280 Sum_probs=21.3
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.+++.+...+...|.... .-.++|..+|++...|
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV 58 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAV 58 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHH
Confidence 355666666655443322 4457899999987655
No 104
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.74 E-value=27 Score=16.83 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 42 FKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 42 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
+++.+...+...+. . ....++|..+|++...|
T Consensus 17 L~~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV 48 (79)
T 1x3u_A 17 LSERERQVLSAVVA--G----LPNKSIAYDLDISPRTV 48 (79)
T ss_dssp HCHHHHHHHHHHTT--T----CCHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHH
Confidence 56666666655322 1 13457899999887655
No 105
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=26.70 E-value=52 Score=18.61 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHhCCCc
Q psy4349 59 NPDAKDLKQLAQKTGLSK 76 (80)
Q Consensus 59 ~p~~~~r~~La~~l~l~~ 76 (80)
-.+...|.+||..|+++.
T Consensus 80 DsSl~~RkeLA~eL~~~~ 97 (130)
T 2gqb_A 80 DSSLSARKELAKELGYSG 97 (130)
T ss_dssp CCSHHHHHHHHHHHTCCC
T ss_pred CccHHHHHHHHHHhCCCC
Confidence 367789999999999874
No 106
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=26.53 E-value=66 Score=17.80 Aligned_cols=36 Identities=14% Similarity=0.390 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHhhhh-----c--CCCCHHHHHHHHHHhCCCc
Q psy4349 41 SFKHHQLRTMKSYFNI-----N--QNPDAKDLKQLAQKTGLSK 76 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~-----~--~~p~~~~r~~La~~l~l~~ 76 (80)
.+|..|+..|+..|.. + -+.+..+-..+...+|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 5789999999998853 2 2566666666667777654
No 107
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.36 E-value=15 Score=16.87 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=11.2
Q ss_pred HHHHHHhCCCcccc
Q psy4349 66 KQLAQKTGLSKRVL 79 (80)
Q Consensus 66 ~~La~~l~l~~~~V 79 (80)
.++|..+|+++..|
T Consensus 17 ~eIA~~l~is~~tV 30 (61)
T 2jpc_A 17 HGISEKLHISIKTV 30 (61)
T ss_dssp HHHHHHTCSCHHHH
T ss_pred HHHHHHhCCCHHHH
Confidence 57899999988655
No 108
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=25.79 E-value=40 Score=19.54 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 42 FKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 42 ~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
+++.+...|...|... ..-.++|..+|++...|
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V 220 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRV 220 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHH
Confidence 4455555555444222 24458899999988765
No 109
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.26 E-value=43 Score=18.82 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCCcccc
Q psy4349 64 DLKQLAQKTGLSKRVL 79 (80)
Q Consensus 64 ~r~~La~~l~l~~~~V 79 (80)
.-.++|..+|++...|
T Consensus 158 s~~EIA~~lgis~~tV 173 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTV 173 (194)
T ss_dssp CHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHCCCHHHH
Confidence 3457899999988765
No 110
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=24.66 E-value=32 Score=18.46 Aligned_cols=39 Identities=5% Similarity=0.213 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.++..+...|...+............+||..++++...|
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv 48 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSV 48 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHH
Confidence 467778888876654321111124457899999887543
No 111
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.42 E-value=71 Score=15.84 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCc
Q psy4349 42 FKHHQLRTMKSYFNI-----NQNPDAKDLKQLAQKTGLSK 76 (80)
Q Consensus 42 ~t~~ql~~Le~~F~~-----~~~p~~~~r~~La~~l~l~~ 76 (80)
++..+...+...|.. +-+.+..+-..+...++++.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 42 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPI 42 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 456666777766643 23455555555555555554
No 112
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=24.39 E-value=56 Score=16.32 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
.++..++..|......+... ...+||..++++...|
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~---t~~ela~~l~is~~tv 53 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPI---TSEELADIFKLSKTTV 53 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCE---EHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCC---CHHHHHHHHCcCHHHH
Confidence 45677777776665433322 4558899999887543
No 113
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=23.55 E-value=32 Score=20.11 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCCCcccc
Q psy4349 63 KDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 63 ~~r~~La~~l~l~~~~V 79 (80)
-.|.+||.+++|-+.||
T Consensus 25 I~R~eLA~~F~CvPSQI 41 (155)
T 3h0d_A 25 IKRSEIANKFRCVPSQI 41 (155)
T ss_dssp ECHHHHHHHTTSCTHHH
T ss_pred EeHHHHHHhcCCChhhc
Confidence 35789999999999875
No 114
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=23.48 E-value=52 Score=19.56 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=24.9
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 39 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
...+|..+...|.-..+- ..-.++|..+++++..|+
T Consensus 171 ~~~Lt~~e~~vl~~~~~g------~s~~eIa~~l~is~~tV~ 206 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVG------KTMEEIADVEGVKYNSVR 206 (234)
T ss_dssp CCCCCHHHHHHHHHHTTT------CCHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHH
Confidence 356888888888664322 245688999999887663
No 115
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.16 E-value=28 Score=17.60 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHhCCCcccc
Q psy4349 58 QNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 58 ~~p~~~~r~~La~~l~l~~~~V 79 (80)
.|| ....+||..+|++...|
T Consensus 22 g~~--psv~EIa~~lgvS~~TV 41 (77)
T 2jt1_A 22 GAP--VKTRDIADAAGLSIYQV 41 (77)
T ss_dssp TSC--EEHHHHHHHHTCCHHHH
T ss_pred CCC--cCHHHHHHHHCCCHHHH
Confidence 355 35558899999986544
No 116
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.72 E-value=61 Score=17.02 Aligned_cols=39 Identities=10% Similarity=0.348 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 41 SFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 41 ~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
.+++.+...+...|..+-+ ....-.++|..+|++...|+
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr 57 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIR 57 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHH
Confidence 3456666666665542211 11245578999999987663
No 117
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=22.51 E-value=51 Score=19.78 Aligned_cols=35 Identities=6% Similarity=0.065 Sum_probs=21.1
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 40 TSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
..+|..+...|.-..+-. ...++|..|++++..|+
T Consensus 174 ~~Lt~re~~vl~~~~~G~------s~~eIa~~l~is~~tV~ 208 (237)
T 3szt_A 174 VRLTARETEMLKWTAVGK------TYGEIGLILSIDQRTVK 208 (237)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHH
Confidence 356666666665432211 34578888888887663
No 118
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=22.51 E-value=64 Score=14.25 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcccc
Q psy4349 44 HHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVL 79 (80)
Q Consensus 44 ~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~V 79 (80)
..+...+...+... + ...++|..+|++...|
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV 48 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKV 48 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHH
Confidence 45555444444322 2 4558899999987654
No 119
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=21.70 E-value=33 Score=16.10 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCccc
Q psy4349 64 DLKQLAQKTGLSKRV 78 (80)
Q Consensus 64 ~r~~La~~l~l~~~~ 78 (80)
...+||..+|++...
T Consensus 12 tq~~lA~~lGvs~~~ 26 (61)
T 1rzs_A 12 TQRAVAKALGISDAA 26 (61)
T ss_dssp SHHHHHHHHTCCHHH
T ss_pred CHHHHHHHhCCCHHH
Confidence 346899999998654
No 120
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=21.32 E-value=55 Score=19.48 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=24.5
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccccC
Q psy4349 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80 (80)
Q Consensus 39 Rt~~t~~ql~~Le~~F~~~~~p~~~~r~~La~~l~l~~~~Vk 80 (80)
...+|..+...|.-..+-. .-.++|..+++++..|+
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~ 208 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQ 208 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 3468888888876643222 34578999999887663
No 121
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.75 E-value=32 Score=17.19 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCCcccc
Q psy4349 64 DLKQLAQKTGLSKRVL 79 (80)
Q Consensus 64 ~r~~La~~l~l~~~~V 79 (80)
.-.+||..+|++...|
T Consensus 33 t~~eLA~~Lgvs~~tV 48 (77)
T 1qgp_A 33 TAHDLSGKLGTPKKEI 48 (77)
T ss_dssp EHHHHHHHHCCCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 4457899999987655
No 122
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=20.51 E-value=1.3e+02 Score=17.01 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=26.7
Q ss_pred CcCCHHHHHHHHHhhhh--cCCCCHHHHHHHHHHh
Q psy4349 40 TSFKHHQLRTMKSYFNI--NQNPDAKDLKQLAQKT 72 (80)
Q Consensus 40 t~~t~~ql~~Le~~F~~--~~~p~~~~r~~La~~l 72 (80)
..++..+|..|+..|+. +..|+...+-++|-.|
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 46789999999999976 6788888888877554
No 123
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=20.38 E-value=32 Score=17.51 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCCcccc
Q psy4349 64 DLKQLAQKTGLSKRVL 79 (80)
Q Consensus 64 ~r~~La~~l~l~~~~V 79 (80)
.-.+||..||++...|
T Consensus 29 t~~eLA~~Lgvsr~tV 44 (81)
T 1qbj_A 29 TAHDLSGKLGTPKKEI 44 (81)
T ss_dssp CHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 3457899999988655
Done!