RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4349
(80 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 57.5 bits (140), Expect = 3e-13
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+R RT+F QL ++ F N+ P A++ ++LA+K GL++R ++
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVK 45
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 54.9 bits (133), Expect = 4e-12
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 35 TKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+R RTSF QL ++ F N P ++ ++LA+K GLS+R ++
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVK 46
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 52.6 bits (127), Expect = 3e-11
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+R RT F QL ++ F N P ++ ++LA++ GL++R ++
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVK 45
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 30.5 bits (69), Expect = 0.041
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 10 SMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLA 69
+ +S + S S ++KR RT+ QL ++ F IN P + +L+
Sbjct: 34 AADSEMKLERKQDGS------SPPKSKRRRTT--DEQLMVLEREFEINPYPSSITRIKLS 85
Query: 70 QKTGLSKRVLQ 80
+ + +Q
Sbjct: 86 LLLNMPPKSVQ 96
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 27.7 bits (62), Expect = 0.55
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 27/67 (40%)
Query: 18 SGAGNSS----------PGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQ 67
SGAG SS P SG L ++F+ ++ P K +++
Sbjct: 37 SGAGKSSLLRVLNLLEMPRSG-----------------TLNIAGNHFDFSKTPSDKAIRE 79
Query: 68 LAQKTGL 74
L + G+
Sbjct: 80 LRRNVGM 86
>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the
GT1 family of glycosyltransferases.
UDP-glucose-diacylglycerol glucosyltransferase (UGDG;
also known as 1,2-diacylglycerol 3-glucosyltransferase)
catalyzes the transfer of glucose from UDP-glucose to
1,2-diacylglycerol forming
3-D-glucosyl-1,2-diacylglycerol.
Length = 374
Score = 27.6 bits (62), Expect = 0.60
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 60 PDAKDLKQLAQKTGLSKRV 78
P+ ++L++LA++ GL+ RV
Sbjct: 243 PEREELEELARELGLADRV 261
>gnl|CDD|217601 pfam03534, SpvB, Salmonella virulence plasmid 65kDa B protein.
Length = 293
Score = 27.7 bits (62), Expect = 0.60
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 13 SLSYESGAGNSSPGSGVHSHQRTKRMRTSF 42
+L+Y SGAGN G G RTS
Sbjct: 29 ALNYSSGAGNGPFGLGWQLGVMAISRRTSK 58
>gnl|CDD|225059 COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide
synthesis [Cell envelope biogenesis, outer membrane].
Length = 226
Score = 26.4 bits (59), Expect = 1.3
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 23 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 71
SPG + +R + FK ++ R+M N + + K
Sbjct: 70 DSPGPVIFKQERVGKNGKPFKIYKFRSMV------VNAEKPQGARFLLK 112
>gnl|CDD|235463 PRK05434, PRK05434, phosphoglyceromutase; Provisional.
Length = 507
Score = 25.8 bits (58), Expect = 2.6
Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 1/11 (9%)
Query: 24 SPGSGVHSHQR 34
S G GVHSH
Sbjct: 119 SDG-GVHSHID 128
>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase.
Length = 699
Score = 25.8 bits (56), Expect = 2.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 5 GDLSSSMESLSYESGAGNSSPGSGVHSHQR 34
GD S + S E SSPGS H H+R
Sbjct: 598 GDKESKKQVQSVEFQTPTSSPGSWFHGHER 627
>gnl|CDD|188241 TIGR02684, dnstrm_HI1420, probable addiction module antidote
protein. Members of this strictly bacterial protein
family are small, at roughly 100 amino acids. The gene
is almost invariably the downstream member of a gene
pair. It is a predicted DNA-binding protein from a
clade within Pfam helix-turn-helix family pfam01381.
These gene pairs, when found on the bacterial
chromosome, are located often with prophage regions,
but also both in integrated plasmid regions and in
housekeeping gene regions. Analysis suggests that the
gene pair may serve as an addiction module [Mobile and
extrachromosomal element functions, Other].
Length = 89
Score = 24.2 bits (53), Expect = 5.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 62 AKDLKQLAQKTGLSKRVL 79
A+ + QLA+KTGLS+ L
Sbjct: 43 ARGMTQLAKKTGLSRESL 60
>gnl|CDD|222895 PHA02589, rnlA, RNA ligase A; Provisional.
Length = 378
Score = 24.6 bits (54), Expect = 6.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 48 RTMKSYFNINQNPDAKDL 65
R M+ +FN+N+NP L
Sbjct: 73 RPMEKFFNLNENPFTMGL 90
>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase.
Length = 288
Score = 24.5 bits (54), Expect = 6.7
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQK 71
K+ R FK + + + P ++ ++A +
Sbjct: 120 KKGRDFFKRRGKNIIAEFTGLGDKPTFEEAAEIADE 155
>gnl|CDD|216016 pfam00602, Flu_PB1, Influenza RNA-dependent RNA polymerase subunit
PB1. Two GTP binding sites exist in this protein.
Length = 740
Score = 24.4 bits (53), Expect = 7.9
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 25 PGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLS 75
G G+ +TKR K L + FN K L+ + + +
Sbjct: 352 LGKGIMLKSKTKRKEVVIKAEALGEIPDAFNEETRNLIKKLEPMIEDGTIR 402
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.122 0.334
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,693,671
Number of extensions: 258964
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 18
Length of query: 80
Length of database: 10,937,602
Length adjustment: 49
Effective length of query: 31
Effective length of database: 8,764,256
Effective search space: 271691936
Effective search space used: 271691936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.1 bits)